Citrus Sinensis ID: 042560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccHHHHHHHHHcHHHHHHHHHHHHHcccEEEEEccccEEcccHHHHcHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHcHcccccc
Coil and Loop (DISEMBL)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAelmgspfalaipadvskvedcKHFVDVTMEHFGRLDHLvtnagvvpmclfedytditkpapamdinfwgsaygtyfaipylkqtKGKIIVVASaagwlppprmsfyNASKAAKIALYETLRVefggdigitivtpglieseitggkflnkngklevdqEIRDVQIsllpvqpteECAKAIVNSacrgdryltqpsw
Flexible Loop (DISEMBL)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLitgassgigkhLAYEYARRRARLVLVARRERQLREVadqaelmgsPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIsllpvqpteECAKAIVnsacrgdryltqpsw
Low Complexity Region (SEG)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHlayeyarrrarlvlvarrerqlrevaDQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW
Disordered region (IsUnstruct)
***VNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR*******
Disordered Region (DISOPRED)
*DLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGK***********************VQPTEECAKAIVNSACRGDRYLTQPSW
Disordered Region (DISEMBL)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW
Disordered Region (DISPRO)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q7SYS6	291	Hydroxysteroid 11-beta-de	N/A	no	0.885	0.872	0.291	5e-26
Q8T197	316	Dehydrogenase/reductase S	yes	no	0.912	0.829	0.309	2e-24
Q6P7J1	291	Hydroxysteroid 11-beta-de	N/A	no	0.864	0.852	0.295	2e-24
Q5HLD8	230	Uncharacterized oxidoredu	yes	no	0.742	0.926	0.328	9e-24
Q8CN40	230	Uncharacterized oxidoredu	yes	no	0.742	0.926	0.328	9e-24
A4IGM4	286	Hydroxysteroid 11-beta-de	no	no	0.714	0.716	0.339	2e-23
Q6PUF4	287	Hydroxysteroid 11-beta-de	yes	no	0.668	0.668	0.343	3e-23
Q6R0J2	292	Corticosteroid 11-beta-de	N/A	no	0.850	0.835	0.309	2e-22
Q6PUF3	287	Hydroxysteroid 11-beta-de	yes	no	0.668	0.668	0.343	5e-22
Q9WYG0	251	Uncharacterized oxidoredu	yes	no	0.787	0.900	0.355	7e-22

>sp|Q7SYS6|DHI1B_XENLA Hydroxysteroid 11-beta-dehydrogenase 1-like protein B OS=Xenopus laevis GN=hsd11b1l-b PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 20/274 (7%)

Query: 17  IAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVL 76
           I +L S    Y+ + F  F   ++N E V GK VLITG+S+G+G+ +AYE+AR  A +++
Sbjct: 5   ILLLLSLCVGYIAYYF--FRTESMNKESVRGKRVLITGSSTGLGEQIAYEFARMGAHIMI 62

Query: 77  VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV 136
            ARR +QL+EVA Q   +G+  A  + +D+  +E  +      +   G LD+LV N    
Sbjct: 63  TARRLQQLQEVASQCMKLGAASAHYVASDMGNLESAQSVAQEAVVKLGGLDYLVLNHIGG 122

Query: 137 PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF 196
                    D+     +  +NF      T  A+  L++++G I+V++S +G +  P  + 
Sbjct: 123 SGGFGFFKGDMDPVVGSTTVNFLSYVQLTSSALSALQESQGSIVVISSMSGRIGAPFTTS 182

Query: 197 YNASKAAKIALYETLRVEFG---GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD 253
           Y ASK A    Y +LR EF      + +T+   G I++E    K  NK            
Sbjct: 183 YCASKFALEGFYSSLRREFALQNSKMSVTVAVLGYIDTENAVKKVGNKVS---------- 232

Query: 254 VQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
                +     E+CA+ +V +A      +  P W
Sbjct: 233 -----MTASSKEDCAREVVKAAVLQQPEIFYPYW 261

Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8T197|DHRS7_DICDI Dehydrogenase/reductase SDR family protein 7-like OS=Dictyostelium discoideum GN=DDB_G0274201 PE=3 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 137/278 (49%), Gaps = 16/278 (5%)

Query: 15  LTIAILPSFLPLYLLF-KFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRAR 73
           L ++I+     LY ++  F+   +R         KVV+ITGASSGIG  LA +YAR   +
Sbjct: 19  LIVSIILPIASLYFIYCNFIAPKLREKPESSYKNKVVIITGASSGIGAELAKKYARLGCK 78

Query: 74  LVLVARRERQLREVADQ----AELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL 129
           + +VARR  QL +V          +     L I  D++ ++DCK+ V+  +E + ++D  
Sbjct: 79  VTIVARRLDQLEKVKSSFLKDYSRVNDDDILVIKGDLTLIDDCKNMVEKVIEKWSKIDIC 138

Query: 130 VTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW 188
           V NAG   +  F     DI+     M++N++     T+    YL+Q+ G IIV++S AG 
Sbjct: 139 VWNAGSGSLIEFSKLQGDISIYRDNMELNYFSLVNCTHLVYKYLEQSHGSIIVISSLAGK 198

Query: 189 LPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVD 248
                 + Y++SK A +  + +LR E   +I ITIV PG I +E     F +    L+  
Sbjct: 199 FGTALRTSYSSSKHAVMGFFNSLRNE-TKNIQITIVCPGFILTE-----FHDNLKTLDGK 252

Query: 249 QEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS 286
           Q  R+            +CA  I+ +  +G R L Q +
Sbjct: 253 QVERNKG----NFMTASQCANEIILAERQGIRELIQTA 286

Putative oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6P7J1|DHI1A_XENLA Hydroxysteroid 11-beta-dehydrogenase 1-like protein A OS=Xenopus laevis GN=hsd11b1l-a PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 23/271 (8%)

Query: 23  FLPLYLLFKFLHFVI-RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE 81
            L L + +   HF    ++N E V GK VLITG+S+GIG+ +AYE+AR  A +++ ARR 
Sbjct: 8   LLSLCVGYTAYHFYSSESMNPESVRGKRVLITGSSTGIGEQIAYEFARMGAHIMVTARRL 67

Query: 82  RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTN--AGVVPMC 139
           ++L+EVA++   +G+  A  + +D+  +   ++     +   G LD+LV N   G     
Sbjct: 68  QRLQEVANECLKLGAASAHYVASDMGNLTSAQYVAQEAVNKLGGLDYLVLNHIGGSASFG 127

Query: 140 LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA 199
            F+   D      ++ INF      T  A+  L++++G I+V++S +G +  P  + Y A
Sbjct: 128 FFKGEMD--PVVGSIYINFLSYVQLTSAALKALQESQGSIVVMSSMSGRIGAPFTTSYCA 185

Query: 200 SKAAKIALYETLRVEFG---GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI 256
           SK A    Y +LR EF     ++ +T+   G I++E    K  NK               
Sbjct: 186 SKFALEGFYSSLRREFALQNSNMSVTVAVLGYIDTENAVKKVGNKVS------------- 232

Query: 257 SLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
             +     E+CA+ +V +A      L  P W
Sbjct: 233 --MSASSKEDCAREVVKAAVLKQPELFYPYW 261

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5HLD8|Y2049_STAEQ Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           V  KV ++TGASSGIG+ +A + +++ A +VLV R E++L E+A Q   + +P A  + A
Sbjct: 4   VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQ---LNTP-AKVVSA 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+   +    +   ++HFG +D +V +AG        DY ++ +    +D+N  G+ + 
Sbjct: 60  DVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDY-NVEQWDTMIDVNIKGTLHV 118

Query: 165 TYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGIT 222
               +PY LKQ+ G II +AS +G+ P    + Y A+KAA  A+ ++L  E     + +T
Sbjct: 119 LQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVT 178

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
            ++PG++++ +T G    +  KLE  Q I D  +  L  QP+
Sbjct: 179 SISPGMVDTPMTEGTDFGERKKLEA-QNIADAVVYAL-TQPS 218

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CN40|Y2036_STAES Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           V  KV ++TGASSGIG+ +A + +++ A +VLV R E++L E+A Q   + +P A  + A
Sbjct: 4   VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQ---LNTP-AKVVSA 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+   +    +   ++HFG +D +V +AG        DY ++ +    +D+N  G+ + 
Sbjct: 60  DVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDY-NVEQWDTMIDVNIKGTLHV 118

Query: 165 TYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGIT 222
               +PY LKQ+ G II +AS +G+ P    + Y A+KAA  A+ ++L  E     + +T
Sbjct: 119 LQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVT 178

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
            ++PG++++ +T G    +  KLE  Q I D  +  L  QP+
Sbjct: 179 SISPGMVDTPMTEGTDFGERKKLEA-QNIADAVVYAL-TQPS 218

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4IGM4|DHI1L_XENTR Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 113/212 (53%), Gaps = 7/212 (3%)

Query: 35  FVIR-TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL 93
           +++R + + E +A   VL+TGAS+GIG+ +AY YAR  A+LVL ARRE  L+EV  +   
Sbjct: 19  YILRDSFDPETLANTRVLVTGASTGIGEEIAYHYARAGAKLVLTARREHALQEVKSRCLE 78

Query: 94  MGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAP 152
           +G+     + AD++     +  V   +   G LD+LV N  G  P  +++   D+     
Sbjct: 79  LGAKNVFLVVADMASHNAREQVVAEALSALGGLDYLVLNHIGWTPFKMWDG--DVNHTRW 136

Query: 153 AMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
            M++NF    +    A+PYL Q+KG IIV++S     P P  + Y ASK A    + +LR
Sbjct: 137 LMEVNFLSYIHLATAALPYLTQSKGSIIVLSSLTAKTPIPYTTSYAASKFALEGFFSSLR 196

Query: 213 VEF---GGDIGITIVTPGLIESEITGGKFLNK 241
            E       + IT+   GLI+++    K  +K
Sbjct: 197 HELTMQNNPVSITLCILGLIDTQSAMEKIKDK 228

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6PUF4|DHI1L_CHICK Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Gallus gallus GN=HSD11B1L PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 108/198 (54%), Gaps = 6/198 (3%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF 98
           T   E ++G  VL+TGAS+GIG+ +AY YA   A +VL ARRE  L+EV  +   +G+  
Sbjct: 26  TFQPEQLSGARVLLTGASAGIGEQMAYHYATFGAEIVLTARREAVLQEVMKKCLTLGAKK 85

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDIN 157
              IPAD+S   +    V   +++ G LD+LV N  GV P  ++    D+      M +N
Sbjct: 86  VFYIPADMSSPSEPDRVVQFAVQNLGGLDYLVLNHIGVSPFQMWGG--DVEHTRWLMQVN 143

Query: 158 FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-- 215
           F+        A+P L++  G ++VV+S  G +P P  + Y+A+K A    + +LR E   
Sbjct: 144 FFSYVALATAALPTLEKNHGSVVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELTM 203

Query: 216 -GGDIGITIVTPGLIESE 232
              ++ IT+   GLI+++
Sbjct: 204 QKRNVSITLCILGLIDTD 221

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6R0J2|DHI1_MESAU Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=Mesocricetus auratus GN=HSD11B1 PE=1 SV=3

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 126/275 (45%), Gaps = 31/275 (11%)

Query: 23  FLPLYLLF--KFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR 80
            LP+ +LF   + +        E + GK V++TGAS GIG+ +AY  +   A +VL AR 
Sbjct: 8   LLPILVLFLAYYYYSTKEEFRPEMLQGKKVIVTGASKGIGREMAYHLSEMGAHVVLTARS 67

Query: 81  ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMC 139
           E  L++VA +   +G+  A  I   +  +   + FV    +  G LD L+ N      M 
Sbjct: 68  EEGLQKVASRCLELGAASAHYIAGTMEDMTFAEQFVLKAGKLMGGLDMLILNHITYTSMN 127

Query: 140 LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA 199
            F D  +I     AM++NF      +  A+P LKQ+ G I+VV+S AG +  P ++ Y+A
Sbjct: 128 FFRD--EIHALRKAMEVNFISYVVMSVAALPMLKQSNGSIVVVSSIAGKMAHPLVASYSA 185

Query: 200 SKAAKIALYETLRVEFG---GDIGITIVTPGLIESEI----TGGKFLNKNGKLEVDQEIR 252
           SK A    + +LR E G    ++ IT+   GLI +E     T G F   N          
Sbjct: 186 SKFALDGFFSSLRREHGVTNVNVSITLCVLGLINTETAMKATSGVF---NA--------- 233

Query: 253 DVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
                  P  P EECA  I+         +   SW
Sbjct: 234 -------PASPKEECALEIIKGGALRQEEVYYDSW 261

Catalyzes reversibly the conversion of cortisol to the inactive metabolite cortisone. Catalyzes reversibly the conversion of 7-ketocholesterol to 7-beta-hydroxycholesterol. In intact cells, the reaction runs only in one direction, from 7-ketocholesterol to 7-beta-hydroxycholesterol.

Mesocricetus auratus (taxid: 10036)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q6PUF3|DHI1L_DANRE Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Danio rerio GN=hsd11b1l PE=2 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 6/198 (3%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF 98
           + N E + G  VL+TGAS+GIG+ LAY YAR  A++V+ ARR   L +V  +   MG+  
Sbjct: 25  SFNEESLKGARVLVTGASTGIGEQLAYHYARLGAQIVITARRGNVLEQVVSKCREMGAQK 84

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDIN 157
           A  IPAD++   D    V   +E  G LD+LV N  G  P  +++   D+      +++N
Sbjct: 85  AFYIPADMANPSDADLVVKYAIEQLGGLDYLVLNHIGPSPYQMWDG--DVQHTRWLLEVN 142

Query: 158 FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           F         A+P L+++KG I+VV+S  G +  P    Y ++K A    +  L+ E   
Sbjct: 143 FLSYLQMAQKALPTLEKSKGSIVVVSSLLGKICGPFALPYASTKFALNGFFGGLQNELAM 202

Query: 217 --GDIGITIVTPGLIESE 232
              ++ ITI   GLI+++
Sbjct: 203 QKSNVSITICILGLIDTD 220

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9WYG0|Y325_THEMA Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0325 PE=3 SV=1

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKVVLITGA SGIGK  A  +A R A++ +    E + +E  +  + MG   A  I  DV
Sbjct: 5   GKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAF-IFGDV 63

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYG 164
           +K  D +  V  T+E FGRLD LV NAG+VP    E+ +  D  K    M +N  G    
Sbjct: 64  AK--DAEQIVKKTVETFGRLDILVNNAGIVPYGNIEETSEEDFDK---TMAVNVKGPFLL 118

Query: 165 TYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
           + +A+  +K+  G +IV V+S AG +  PR   Y+ SKAA + L  +L V++  D GI +
Sbjct: 119 SKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDY-VDYGIRV 177

Query: 224 --VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACRG 278
             V PG  +SE      + +       +E+     S +P++     EE A AI+ +AC  
Sbjct: 178 NAVCPGTTQSE----GLMARVKASPNPEELLKKMTSRIPMKRLGKEEEIAFAILFAACDE 233

Query: 279 DRYLT 283
             ++T
Sbjct: 234 AGFMT 238

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
363807318	377	uncharacterized protein LOC100787835 [Gl	1.0	0.761	0.608	1e-104
255540161	349	Corticosteroid 11-beta-dehydrogenase, pu	1.0	0.822	0.616	1e-96
449454959	349	PREDICTED: hydroxysteroid 11-beta-dehydr	1.0	0.822	0.595	3e-95
449503706	349	PREDICTED: hydroxysteroid 11-beta-dehydr	1.0	0.822	0.595	3e-95
449503702	429	PREDICTED: hydroxysteroid 11-beta-dehydr	1.0	0.668	0.620	6e-95
449454955	520	PREDICTED: uncharacterized protein LOC10	1.0	0.551	0.620	7e-95
449470842	347	PREDICTED: hydroxysteroid 11-beta-dehydr	1.0	0.827	0.620	8e-95
15241261	342	hydroxysteroid dehydrogenase 6 [Arabidop	1.0	0.839	0.574	2e-92
359491562	353	PREDICTED: LOW QUALITY PROTEIN: hydroxys	0.996	0.810	0.606	2e-90
449470844	344	PREDICTED: dehydrogenase/reductase SDR f	0.867	0.723	0.614	2e-90

>gi|363807318|ref|NP_001242368.1| uncharacterized protein LOC100787835 [Glycine max] gi|255634846|gb|ACU17782.1| unknown [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/317 (60%), Positives = 228/317 (71%), Gaps = 30/317 (9%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKF---------------------------- 32
           MDL+++FLNIVAP+ T   L  FLP Y  FKF                            
Sbjct: 1   MDLIHKFLNIVAPITTFFFLCLFLPPYWTFKFFLSIINSIFSENVAGKVVHITGASSGIG 60

Query: 33  --LHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ 90
             L F++R+I +E+VAGKV+LITGASSGIG+HLAYEY RR ARL LVARRE +L+EVA  
Sbjct: 61  EILRFIVRSIFSENVAGKVILITGASSGIGEHLAYEYGRRGARLALVARRENRLKEVASI 120

Query: 91  AELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP 150
           A+L GSP  + IPADVS  +DCK FVD T+ HFG+LDHLV NAGV    LFE  TDI   
Sbjct: 121 AKLFGSPEVIIIPADVSSSQDCKRFVDSTINHFGQLDHLVNNAGVSAPGLFESTTDIRNF 180

Query: 151 APAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
           APAMDINFWGSAYGTYFAIP+L+++KGKII +AS  GWLP PRMS YNASKAA I+LYET
Sbjct: 181 APAMDINFWGSAYGTYFAIPHLRKSKGKIIAIASCTGWLPVPRMSIYNASKAAVISLYET 240

Query: 211 LRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA 270
           LR+E G DIG+TIVTPGLIESE++ GK L K GK+  DQ IRD Q SL+P++   E  K+
Sbjct: 241 LRIELGRDIGMTIVTPGLIESEMSQGKVLFKEGKMVSDQLIRDAQASLIPIRSVTEAVKS 300

Query: 271 IVNSACRGDRYLTQPSW 287
           IVNSACRGD YLT+P+W
Sbjct: 301 IVNSACRGDSYLTEPAW 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540161|ref|XP_002511145.1| Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis] gi|223550260|gb|EEF51747.1| Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/287 (61%), Positives = 214/287 (74%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           MDL+N FLN+VAP  T   L   LP YL++K    V   I +EDV GKVVLITGASSGIG
Sbjct: 1   MDLINTFLNLVAPPFTFFSLCFLLPPYLIYKGFSSVFNFIFSEDVTGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +HLAYEYA+R A L LVARRE++LR+V  +AE  GSP  L I ADV KV+DC   V+ T+
Sbjct: 61  EHLAYEYAKRGACLALVARREKRLRDVVYRAEEYGSPDVLMILADVQKVDDCNRLVEETI 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAG+    + E+ TDIT     MD NFWGSAY T+FA+PYL+ T+GKII
Sbjct: 121 SHFGRLDHLVNNAGISSAAMLEEITDITTFRTIMDTNFWGSAYITHFAVPYLRGTRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
           V+AS+A WLP PR S YNASKAA +A +ETLRVE G DI + IVTPG IESE+T GKFL 
Sbjct: 181 VIASSASWLPSPRFSIYNASKAALVAFFETLRVELGSDIHVLIVTPGFIESELTQGKFLL 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
             GK+++DQ+ RDVQ+S +PVQ   ECA++IVNSA RGD+YLT+P W
Sbjct: 241 AEGKVDLDQDARDVQVSAIPVQAVTECARSIVNSARRGDKYLTEPKW 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454959|ref|XP_004145221.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like [Cucumis sativus] gi|449470838|ref|XP_004153123.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like [Cucumis sativus]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/287 (59%), Positives = 211/287 (73%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           M+L+  FLN+V+P +T   L  FLP Y++ K+  +++R I  EDVAGKVVLITGASSGIG
Sbjct: 1   MELIKSFLNLVSPPITFVSLGFFLPPYVVLKYFLYLVRGIFTEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +HLAY+YA+R ARL LV RR+  L EVAD A   GSP  + IPADVSK++D +  +  T+
Sbjct: 61  EHLAYQYAQRGARLALVDRRKSPLHEVADIARYYGSPDVITIPADVSKLQDSRRIIYDTI 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAGV  M LFE+  DIT     MD N+WGS Y T FAIPYL+  +GKII
Sbjct: 121 NHFGRLDHLVNNAGVANMTLFEEMKDITSFNQIMDTNYWGSVYTTQFAIPYLRNNRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
           V++S A WLP PRMS YNA+KAA  +++ETLRVE   DIGITIVTPG +ESE+T GK L 
Sbjct: 181 VLSSTAAWLPAPRMSIYNATKAALKSMFETLRVELAPDIGITIVTPGFVESELTKGKALY 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
            +G +EV Q++RD  I  +PV+  E CAKAIV S CRGDRYLT+PSW
Sbjct: 241 SHGAMEVHQDVRDALIGAIPVETVEACAKAIVRSVCRGDRYLTEPSW 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503706|ref|XP_004162136.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like [Cucumis sativus]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/287 (59%), Positives = 211/287 (73%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           M+L+  FLN+V+P +T   L  FLP Y++ K+  +++R I  EDVAGKVVLITGASSGIG
Sbjct: 1   MELIKSFLNLVSPPITFVSLGFFLPPYVVLKYFLYLVRGIFTEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +HLAY+YA+R ARL LV RR+  L EVAD A   GSP  + IPADVSK++D +  +  T+
Sbjct: 61  EHLAYQYAQRGARLALVDRRKSPLHEVADIARYYGSPDVITIPADVSKLQDSRRIIYDTI 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAGV  M LFE+  DIT     MD N+WGS Y T FAIPYL+  +GKII
Sbjct: 121 NHFGRLDHLVNNAGVANMTLFEEMKDITSFNQIMDTNYWGSVYTTQFAIPYLRNNRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
           V++S A WLP PRMS YNA+KAA  +++ETLRVE   DIGITIVTPG +ESE+T GK L 
Sbjct: 181 VLSSTAAWLPAPRMSIYNATKAALKSMFETLRVELAPDIGITIVTPGFVESELTKGKALY 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
            +G +EV Q++RD  I  +PV+  E CAKAIV S CRGDRYLT+PSW
Sbjct: 241 SHGAMEVHQDVRDALIGAIPVETVEACAKAIVRSVCRGDRYLTEPSW 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503702|ref|XP_004162134.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like, partial [Cucumis sativus]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 178/287 (62%), Positives = 219/287 (76%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           MDL+N FLN++   ++        PLY  FK L F IR+  AEDVAGKVVLITGASSGIG
Sbjct: 1   MDLINNFLNLIIDRISQTAFSFVFPLYFFFKLLLFPIRSSFAEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +H+AYEYA+R A L LVARRE +LREVA+ AE++GSPFAL I ADVS V+DCK  V  T+
Sbjct: 61  EHVAYEYAKRGAYLALVARREHRLREVAEVAEILGSPFALLIHADVSNVDDCKRCVQTTL 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAG+  + LFE+Y D    A  MD +FWG+ Y TY+AIPYLKQT+GKII
Sbjct: 121 THFGRLDHLVNNAGITSINLFEEYDDPRNVASVMDTDFWGTVYCTYYAIPYLKQTRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
            +AS+A WLP PR+SFY+ASKAA I+ YETLRVE G DIGITIVTPGL ESE+T GKF+ 
Sbjct: 181 GIASSAAWLPTPRLSFYSASKAAVISFYETLRVEIGRDIGITIVTPGLTESEMTQGKFMF 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
           ++GK+ +DQE+RD  +S++P++     AKAIVN  CRGD Y+T+P W
Sbjct: 241 EDGKMYLDQELRDAVMSVMPIEAVGSAAKAIVNGGCRGDEYVTEPPW 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454955|ref|XP_004145219.1| PREDICTED: uncharacterized protein LOC101220214 [Cucumis sativus]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 178/287 (62%), Positives = 219/287 (76%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           MDL+N FLN++   ++        PLY  FK L F IR+  AEDVAGKVVLITGASSGIG
Sbjct: 1   MDLINNFLNLIIDRISQTAFSFVFPLYFFFKLLLFPIRSSFAEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +H+AYEYA+R A L LVARRE +LREVA+ AE++GSPFAL I ADVS V+DCK  V  T+
Sbjct: 61  EHVAYEYAKRGAYLALVARREHRLREVAEVAEILGSPFALLIHADVSNVDDCKRCVQTTL 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAG+  + LFE+Y D    A  MD +FWG+ Y TY+AIPYLKQT+GKII
Sbjct: 121 THFGRLDHLVNNAGITSINLFEEYDDPRNVASVMDTDFWGTVYCTYYAIPYLKQTRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
            +AS+A WLP PR+SFY+ASKAA I+ YETLRVE G DIGITIVTPGL ESE+T GKF+ 
Sbjct: 181 GIASSAAWLPTPRLSFYSASKAAVISFYETLRVEIGRDIGITIVTPGLTESEMTQGKFMF 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
           ++GK+ +DQE+RD  +S++P++     AKAIVN  CRGD Y+T+P W
Sbjct: 241 EDGKMYLDQELRDAVMSVMPIEAVGSAAKAIVNGGCRGDEYVTEPPW 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470842|ref|XP_004153125.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like [Cucumis sativus]

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 178/287 (62%), Positives = 219/287 (76%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           MDL+N FLN++   ++        PLY  FK L F IR+  AEDVAGKVVLITGASSGIG
Sbjct: 1   MDLINNFLNLIIDRISQTAFSFVFPLYFFFKLLLFPIRSSFAEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +H+AYEYA+R A L LVARRE +LREVA+ AE++GSPFAL I ADVS V+DCK  V  T+
Sbjct: 61  EHVAYEYAKRGAYLALVARREHRLREVAEVAEILGSPFALLIHADVSNVDDCKRCVQTTL 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLV NAG+  + LFE+Y D    A  MD +FWG+ Y TY+AIPYLKQT+GKII
Sbjct: 121 THFGRLDHLVNNAGITSINLFEEYDDPRNVASVMDTDFWGTVYCTYYAIPYLKQTRGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
            +AS+A WLP PR+SFY+ASKAA I+ YETLRVE G DIGITIVTPGL ESE+T GKF+ 
Sbjct: 181 GIASSAAWLPTPRLSFYSASKAAVISFYETLRVEIGRDIGITIVTPGLTESEMTQGKFMF 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
           ++GK+ +DQE+RD  +S++P++     AKAIVN  CRGD Y+T+P W
Sbjct: 241 EDGKMYLDQELRDAVMSVMPIEAVGSAAKAIVNGGCRGDEYVTEPPW 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241261|ref|NP_199890.1| hydroxysteroid dehydrogenase 6 [Arabidopsis thaliana] gi|8777400|dbj|BAA96990.1| unnamed protein product [Arabidopsis thaliana] gi|57291844|gb|AAW49294.1| At5g50770 [Arabidopsis thaliana] gi|332008607|gb|AED95990.1| hydroxysteroid dehydrogenase 6 [Arabidopsis thaliana]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/287 (57%), Positives = 213/287 (74%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           MD +N+ +N + P+LT+  L  F P Y   K    + R + +E+VAGKVV+ITGA+SGIG
Sbjct: 1   MDSINKIINFLFPLLTLYALLVFYPTYQRLKSAVSICRNLFSENVAGKVVVITGAASGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           + LAYEY +R A L LV  R   L  VA  AEL GSP  L + ADVSK++DC+ F+  T+
Sbjct: 61  EALAYEYGKRGAYLALVDIRGEPLFHVAALAELYGSPEVLPLVADVSKLQDCERFIRATV 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
            HFGRLDHLVTNAGV P+  F D  D++K +PAMDINFWGS Y T+FA PYLK+ +G+I+
Sbjct: 121 LHFGRLDHLVTNAGVAPLYFFADIEDVSKASPAMDINFWGSVYCTFFASPYLKKFRGRIV 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
           V+AS  G++  PR+SFY ASKAA IA YETLR EFG DIG+TIV PG+++SE++ GKF+ 
Sbjct: 181 VIASGCGYIASPRLSFYCASKAAVIAFYETLRTEFGSDIGVTIVAPGIVDSEMSRGKFMT 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
           K+GKL VD+E+RDVQ+S+LPV+  E CAKAI+ S CRGDRYL +P W
Sbjct: 241 KDGKLVVDKELRDVQMSVLPVESAERCAKAIMRSVCRGDRYLLEPDW 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491562|ref|XP_003634292.1| PREDICTED: LOW QUALITY PROTEIN: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like [Vitis vinifera]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/287 (60%), Positives = 222/287 (77%), Gaps = 1/287 (0%)

Query: 1   MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
           M+ +++ LNI    + +  L  FL  +L F  L F++R++ +EDVAGKVVLITGASSGIG
Sbjct: 1   MNFIHKVLNIALHSMGLITLLFFLLSFLSFNSLFFILRSLLSEDVAGKVVLITGASSGIG 60

Query: 61  KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
           +HLAY+YARR A LVLVAR+E+ ++EVAD+A  +GSP  L I ADVSKVE CK FVD  +
Sbjct: 61  EHLAYQYARRGACLVLVARKEKSIQEVADRARSLGSPEVLVIRADVSKVEVCKSFVDEAV 120

Query: 121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
           EHF RLDHLV NAG+ P+ +F+D TDIT   P M  NFWGS   T+ A+P+L++TKGKII
Sbjct: 121 EHFRRLDHLVNNAGITPVRMFKDSTDITNFVPVMGTNFWGSICSTHSAVPHLRKTKGKII 180

Query: 181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
           V+AS+ GWL  PRMS Y ASKAA I+LYE+LRVEFG +IGI IVTPGLIESE+T GKFL 
Sbjct: 181 VIASSGGWLSAPRMSIYLASKAAVISLYESLRVEFGTNIGIMIVTPGLIESEMTQGKFLX 240

Query: 241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
           + G +++DQ+IRDVQ+S++PV+  E CA AIVNS  RG++Y T+PSW
Sbjct: 241 E-GLMKLDQDIRDVQMSVIPVESAERCANAIVNSTXRGEKYPTEPSW 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470844|ref|XP_004153126.1| PREDICTED: dehydrogenase/reductase SDR family protein 7-like [Cucumis sativus]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 153/249 (61%), Positives = 197/249 (79%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF 98
           ++ +EDVAGKVVLITGASSGIG+HLAYEYA+R A L LVARRE +LREVA  A+ +GSP+
Sbjct: 32  SVFSEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRENRLREVAAVAQYLGSPY 91

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
           AL IPAD+SK+EDCK  +  T+ HF RLDHLV NAGV  + LFE+Y ++    P MD+NF
Sbjct: 92  ALVIPADISKIEDCKRCIQTTVTHFRRLDHLVNNAGVSSVNLFEEYDNLQNAVPVMDVNF 151

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           WG  Y +Y+ IP+LKQ++GKII +AS+A WLP PR+SFY +SKAA I+ YETLRVE G D
Sbjct: 152 WGMVYCSYYGIPHLKQSRGKIIGIASSAAWLPAPRLSFYTSSKAAVISFYETLRVEVGRD 211

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG 278
           IGITIVTPGL+ESE+T GKF++K+G L +DQ++RD  +S +P+ P ++  K I+ S C+G
Sbjct: 212 IGITIVTPGLVESEMTQGKFMSKDGHLYLDQQLRDATVSAMPIMPIDDAVKGILRSVCKG 271

Query: 279 DRYLTQPSW 287
           DRY T+P W
Sbjct: 272 DRYATEPRW 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2163315	342	HSD6 "hydroxysteroid dehydroge	1.0	0.839	0.526	2.3e-78
TAIR|locus:2159747	349	HSD1 "hydroxysteroid dehydroge	1.0	0.822	0.494	2.8e-73
TAIR|locus:2832487	349	HSD1 "hydroxysteroid dehydroge	1.0	0.822	0.494	2.8e-73
TAIR|locus:2159737	299	HSD4 "hydroxysteroid dehydroge	0.965	0.926	0.445	9e-61
TAIR|locus:2832482	299	HSD7 "hydroxysteroid dehydroge	0.965	0.926	0.445	9e-61
TAIR|locus:2099515	309	HSD3 "hydroxysteroid dehydroge	0.958	0.889	0.428	1.2e-56
TAIR|locus:2140553	389	HSD5 "hydroxysteroid dehydroge	0.979	0.722	0.408	5.6e-52
TAIR|locus:2099510	321	HSD2 "hydroxysteroid dehydroge	0.843	0.753	0.452	7.2e-52
TIGR_CMR|SO_0438	267	SO_0438 "oxidoreductase, short	0.811	0.872	0.315	5.7e-27
DICTYBASE|DDB_G0282765	304	DDB_G0282765 "short-chain dehy	0.505	0.476	0.327	1.2e-19

TAIR|locus:2163315 HSD6 "hydroxysteroid dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 151/287 (52%), Positives = 198/287 (68%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             MD +N+ +N + P+LT+  L  F P Y   K    + R + +E+VAGKVV+ITGA+SGIG
Sbjct:     1 MDSINKIINFLFPLLTLYALLVFYPTYQRLKSAVSICRNLFSENVAGKVVVITGAASGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +                             AEL GSP  L + ADVSK++DC+ F+  T+
Sbjct:    61 EALAYEYGKRGAYLALVDIRGEPLFHVAALAELYGSPEVLPLVADVSKLQDCERFIRATV 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
              HFGRLDHLVTNAGV P+  F D  D++K +PAMDINFWGS Y T+FA PYLK+ +G+I+
Sbjct:   121 LHFGRLDHLVTNAGVAPLYFFADIEDVSKASPAMDINFWGSVYCTFFASPYLKKFRGRIV 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
             V+AS  G++  PR+SFY ASKAA IA YETLR EFG DIG+TIV PG+++SE++ GKF+ 
Sbjct:   181 VIASGCGYIASPRLSFYCASKAAVIAFYETLRTEFGSDIGVTIVAPGIVDSEMSRGKFMT 240

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
             K+GKL VD+E+RDVQ+S+LPV+  E CAKAI+ S CRGDRYL +P W
Sbjct:   241 KDGKLVVDKELRDVQMSVLPVESAERCAKAIMRSVCRGDRYLLEPDW 287

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2159747 HSD1 "hydroxysteroid dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 142/287 (49%), Positives = 189/287 (65%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             M+L+N+FLN+ AP  T   L  FLP +  FKFL  +  TI +E++ GKVVLITGASSGIG
Sbjct:     1 MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSENLYGKVVLITGASSGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +                           + A  +GSP  + + ADVSK +DC+  VD T+
Sbjct:    61 EQLAYEYACRGACLALTARRKNRLEEVAEIARELGSPNVVTVHADVSKPDDCRRIVDDTI 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
              HFGRLDHLV NAG+  + +FE+  DIT+    +D NFWGS Y T  A+PYL+Q+ GKI+
Sbjct:   121 THFGRLDHLVNNAGMTQISMFENIEDITRTKAVLDTNFWGSVYTTRAALPYLRQSNGKIV 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
              ++S+A WL  PRMSFYNASKAA ++ +ET+R+E GGD+ ITIVTPG IESE+T GK+ +
Sbjct:   181 AMSSSAAWLTAPRMSFYNASKAALLSFFETMRIELGGDVHITIVTPGYIESELTQGKYFS 240

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
               G+L V+Q++RDVQ+   PV     CAK+IVN  CR  RY+T+PSW
Sbjct:   241 GEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRYVTEPSW 287

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0008202 "steroid metabolic process" evidence=IDA

GO:0070524 "11-beta-hydroxysteroid dehydrogenase (NADP+) activity" evidence=IDA

GO:0072555 "17-beta-ketosteroid reductase activity" evidence=IDA

GO:0072582 "17-beta-hydroxysteroid dehydrogenase (NADP+) activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

TAIR|locus:2832487 HSD1 "hydroxysteroid dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 142/287 (49%), Positives = 189/287 (65%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             M+L+N+FLN+ AP  T   L  FLP +  FKFL  +  TI +E++ GKVVLITGASSGIG
Sbjct:     1 MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSENLYGKVVLITGASSGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +                           + A  +GSP  + + ADVSK +DC+  VD T+
Sbjct:    61 EQLAYEYACRGACLALTARRKNRLEEVAEIARELGSPNVVTVHADVSKPDDCRRIVDDTI 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
              HFGRLDHLV NAG+  + +FE+  DIT+    +D NFWGS Y T  A+PYL+Q+ GKI+
Sbjct:   121 THFGRLDHLVNNAGMTQISMFENIEDITRTKAVLDTNFWGSVYTTRAALPYLRQSNGKIV 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
              ++S+A WL  PRMSFYNASKAA ++ +ET+R+E GGD+ ITIVTPG IESE+T GK+ +
Sbjct:   181 AMSSSAAWLTAPRMSFYNASKAALLSFFETMRIELGGDVHITIVTPGYIESELTQGKYFS 240

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
               G+L V+Q++RDVQ+   PV     CAK+IVN  CR  RY+T+PSW
Sbjct:   241 GEGELIVNQDMRDVQVGPFPVASASGCAKSIVNGVCRKQRYVTEPSW 287

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2159737 HSD4 "hydroxysteroid dehydrogenase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 128/287 (44%), Positives = 172/287 (59%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             MDL N+  NI+ P++T++ L  F+P  + FK L F+     +E V GKVV+ITG+SSGIG
Sbjct:     1 MDLNNKIFNILLPIVTVSFLLVFMPFSIFFKLLQFIRGCKESEKVNGKVVIITGSSSGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +H                          D+   +GSP    +  DVS ++DCK FV  T+
Sbjct:    61 EHLAYEYARRGAYLTLVARREDRLQVVADRCRKLGSPDVAVVRGDVSVIKDCKRFVQETI 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
               FGRLDHLV NAG+     FEDY++I+   P ++ NFWG  Y T+FAIP+LK+TKGKII
Sbjct:   121 SRFGRLDHLVNNAGIAEAKFFEDYSEISDVLPIVNTNFWGPVYATHFAIPHLKKTKGKII 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
              VAS AGW   PRMS Y ASKAA I  YETLR+E   ++G+TIV PGLIE+    G   N
Sbjct:   181 AVASPAGWSGVPRMSIYAASKAAMINFYETLRIELHPEVGVTIVFPGLIEN----G---N 233

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
              N  L  +++  D    ++ ++   ECAKA+VN  CRG  ++ +PSW
Sbjct:   234 TNPDLLAEKQ--DWS-QVVTIESAAECAKAVVNGICRGKTFVAEPSW 277

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2832482 HSD7 "hydroxysteroid dehydrogenase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 128/287 (44%), Positives = 172/287 (59%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             MDL N+  NI+ P++T++ L  F+P  + FK L F+     +E V GKVV+ITG+SSGIG
Sbjct:     1 MDLNNKIFNILLPIVTVSFLLVFMPFSIFFKLLQFIRGCKESEKVNGKVVIITGSSSGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +H                          D+   +GSP    +  DVS ++DCK FV  T+
Sbjct:    61 EHLAYEYARRGAYLTLVARREDRLQVVADRCRKLGSPDVAVVRGDVSVIKDCKRFVQETI 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
               FGRLDHLV NAG+     FEDY++I+   P ++ NFWG  Y T+FAIP+LK+TKGKII
Sbjct:   121 SRFGRLDHLVNNAGIAEAKFFEDYSEISDVLPIVNTNFWGPVYATHFAIPHLKKTKGKII 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
              VAS AGW   PRMS Y ASKAA I  YETLR+E   ++G+TIV PGLIE+    G   N
Sbjct:   181 AVASPAGWSGVPRMSIYAASKAAMINFYETLRIELHPEVGVTIVFPGLIEN----G---N 233

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
              N  L  +++  D    ++ ++   ECAKA+VN  CRG  ++ +PSW
Sbjct:   234 TNPDLLAEKQ--DWS-QVVTIESAAECAKAVVNGICRGKTFVAEPSW 277

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2099515 HSD3 "hydroxysteroid dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 123/287 (42%), Positives = 167/287 (58%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             MD++   LN++ P LTI  L  F P YLL K +  + + ++ E+VA KVVLITGASSGIG
Sbjct:     1 MDILTTILNLLLPPLTIIFLFLFYPFYLLIKLVLCLRKNLHFENVARKVVLITGASSGIG 60

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +H                          + +  +GS   + IP DVS VEDCK F+D T+
Sbjct:    61 EHVAYEYAKKGAYLALVARRRDRLEIVAETSRQLGSGNVIIIPGDVSNVEDCKKFIDETI 120

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
              HFG+LDHL+ NAGV    LFED+T I    P MDINFWG+ Y TYFAIP+L+++KGKI+
Sbjct:   121 RHFGKLDHLINNAGVFQTVLFEDFTQIQDANPIMDINFWGTTYITYFAIPHLRKSKGKIV 180

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
              + S +  +P P  S Y ASKAA +  +ETLR+E   DI ITIV PG++ +++T    + 
Sbjct:   181 AITSGSANIPLPLASIYAASKAALLRFFETLRIELSPDIKITIVLPGVVSTDMTTPHCIE 240

Query:   241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
             K G         D  +S    +   +CAKAI     RG+ Y+ +PSW
Sbjct:   241 KYGS--------DFILS----ESVSKCAKAIFRGIGRGETYIEEPSW 275

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TAIR|locus:2140553 HSD5 "hydroxysteroid dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 119/291 (40%), Positives = 166/291 (57%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINA----EDVAGKVVLITGAS 56
             +DL+N  +N+VAP  T+ ++    PL     F+ F  R  N+    E++  KVV+ITGAS
Sbjct:     2 VDLLNSVMNLVAPPATMVVMAFAWPL---LSFISFSERAYNSYFATENMEDKVVVITGAS 58

Query:    57 SGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFV 116
             S IG+                           ++A+ +G+   + I ADV K +DC+ F+
Sbjct:    59 SAIGEQIAYEYAKRGANLVLVARREQRLRVVSNKAKQIGANHVIIIAADVIKEDDCRRFI 118

Query:   117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK 176
                + ++GR+DHLV  A +     FE+ +D T     +DINFWG+ Y TY A+PYL QT 
Sbjct:   119 TQAVNYYGRVDHLVNTASLGHTFYFEEVSDTTVFPHLLDINFWGNVYPTYVALPYLHQTN 178

Query:   177 GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGG 236
             G+I+V AS   WLP PRMS Y+A+KAA +  YETLR E  GD+GITI T G I SE++GG
Sbjct:   179 GRIVVNASVENWLPLPRMSLYSAAKAALVNFYETLRFELNGDVGITIATHGWIGSEMSGG 238

Query:   237 KFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW 287
             KF+ + G     +E R+V  +     P EE AK IV  ACRGD Y+  P+W
Sbjct:   239 KFMLEEGAEMQWKEEREVPAN---GGPLEEFAKMIVAGACRGDAYVKFPNW 286

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2099510 HSD2 "hydroxysteroid dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 110/243 (45%), Positives = 147/243 (60%)

Query:     1 MDLVNEFLNIVAPVLTIAILPSFLPLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIG 60
             MD+++  LN + P LTI+ L  F P YL  K +   ++ ++ E+V GKVVLITGASSGIG
Sbjct:     1 MDMLHTILNFLLPPLTISFLVLFYPFYLFTKLMS-CLKHLHFENVTGKVVLITGASSGIG 59

Query:    61 KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKVEDCKHFVDVTM 120
             +H                          + +  +GS   + IP DVS VEDCK F+D T+
Sbjct:    60 EHVAYEYAKKGAKLALVARRKDRLEIVAETSRQLGSGDVIIIPGDVSNVEDCKKFIDETI 119

Query:   121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII 180
              HFG+LDHL+ NAGV    +FED+T I      MDINFWGS Y TYFAIP+L+++KGKI+
Sbjct:   120 HHFGKLDHLINNAGVPQTVIFEDFTQIQDANSIMDINFWGSTYITYFAIPHLRKSKGKIV 179

Query:   181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN 240
             V++SA   +P    S Y+ASKAA +  +ETLRVE   DI ITI  PG I +++T  +F  
Sbjct:   180 VISSATAIIPLQAASVYSASKAALVKFFETLRVEISPDIKITIALPGFISTDMTTPQFKE 239

Query:   241 KNG 243
               G
Sbjct:   240 MYG 242

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

TIGR_CMR|SO_0438 SO_0438 "oxidoreductase, short chain dehydrogenase/reductase family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 77/244 (31%), Positives = 123/244 (50%)

Query:    43 EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMG-SPFALA 101
             + + GKVV+ITGAS GIG+                            +    G +PF  A
Sbjct:     2 DGLTGKVVIITGASEGIGRALAIAMARIGCQLVLSARNETRLASLALEVANYGPTPFVFA 61

Query:   102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
               ADVS    C+  +  T+ H+GR+D LV NAG+     F++ T ++     M +N+ G 
Sbjct:    62 --ADVSSASQCEDLIHATIAHYGRIDILVNNAGMTMWSRFDELTQLSVLEDIMRVNYLGP 119

Query:   162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
             AY T+ A+PYLK ++G++++VAS AG    P  S Y ASK A I  +++LR+E   D + 
Sbjct:   120 AYLTHAALPYLKSSQGQVVIVASVAGLTGVPTRSGYAASKHAVIGFFDSLRIELADDNVA 179

Query:   221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS-ACRGD 279
             +T++ P  + S+I   + L+  GK      +++ +I        E+CA  ++   A RG 
Sbjct:   180 VTVICPDFVVSQIHK-RALDGAGKPLGKSPMQEAKIL-----SAEQCANMMLPVIATRGR 233

Query:   280 RYLT 283
               +T
Sbjct:   234 LLIT 237

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

DICTYBASE|DDB_G0282765 DDB_G0282765 "short-chain dehydrogenase/reductase (SDR) family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 52/159 (32%), Positives = 84/159 (52%)

Query:   100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW 159
             L +  D SK  DCK+ +++ ++ FGR+D L+  AGV     F+D TD+      MDIN++
Sbjct:    60 LVVSYDASKESDCKNLIEIVIKQFGRIDLLLLCAGVSYHNSFKDTTDLNVYRQMMDINYF 119

Query:   160 GSAYGTYFAIPYL-----KQT---------KGKIIVVASAAGWLPPPRMSFYNASKAAKI 205
             G  Y TY+A+PY+     KQ+         K +I V++S +G L  P  + Y ASK A  
Sbjct:   120 GYMYTTYYALPYMIKQQQKQSTNNNNNSNNKPQIAVISSISGALGLPLRAGYCASKFAVN 179

Query:   206 ALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGK 244
               ++ LR+E    + IT++ P  + + +      + N K
Sbjct:   180 GFFQALRLEVQSYVDITLLLPTTVNTPMRSHSLGDPNEK 218

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50172	DHI1_MOUSE	1, ., 1, ., 1, ., 1, 4, 6	0.3018	0.8327	0.8184	yes	no
Q6QLL4	DHI1_CAVPO	1, ., 1, ., 1, ., 1, 4, 6	0.3028	0.8710	0.8333	yes	no
Q8T197	DHRS7_DICDI	1, ., 1, ., -, ., -	0.3093	0.9128	0.8291	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
4th Layer	1.1.1.14	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	4e-69
PRK06181	263	PRK06181, PRK06181, short chain dehydrogenase; Pro	3e-58
cd05233	234	cd05233, SDR_c, classical (c) SDRs	1e-50
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	1e-41
cd05360	233	cd05360, SDR_c3, classical (c) SDR, subgroup 3	1e-41
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	1e-39
cd08939	239	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine	4e-37
PRK07231	251	PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein)	7e-37
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	1e-36
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	9e-36
cd05323	244	cd05323, ADH_SDR_c_like, insect type alcohol dehyd	6e-35
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	2e-34
cd05364	253	cd05364, SDR_c11, classical (c) SDR, subgroup 11	1e-33
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	3e-33
cd08934	243	cd08934, CAD_SDR_c, clavulanic acid dehydrogenase	6e-33
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	2e-32
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	4e-32
PRK07109	334	PRK07109, PRK07109, short chain dehydrogenase; Pro	1e-31
PRK07825	273	PRK07825, PRK07825, short chain dehydrogenase; Pro	6e-31
PRK05650	270	PRK05650, PRK05650, short chain dehydrogenase; Pro	6e-31
PRK12939	250	PRK12939, PRK12939, short chain dehydrogenase; Pro	8e-30
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	9e-30
cd05350	239	cd05350, SDR_c6, classical (c) SDR, subgroup 6	1e-29
PRK06841	255	PRK06841, PRK06841, short chain dehydrogenase; Pro	1e-28
PRK05557	248	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-28
cd08932	223	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like	2e-27
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	2e-27
PRK05565	247	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-27
PRK06139	330	PRK06139, PRK06139, short chain dehydrogenase; Pro	3e-27
PRK08936	261	PRK08936, PRK08936, glucose-1-dehydrogenase; Provi	4e-27
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	5e-27
PRK07890	258	PRK07890, PRK07890, short chain dehydrogenase; Pro	6e-27
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	9e-27
PRK06138	252	PRK06138, PRK06138, short chain dehydrogenase; Pro	9e-27
PRK07024	257	PRK07024, PRK07024, short chain dehydrogenase; Pro	9e-27
PRK08213	259	PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro	1e-26
PRK06463	255	PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-26
TIGR01963	255	TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase	3e-26
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	4e-26
PRK07326	237	PRK07326, PRK07326, short chain dehydrogenase; Pro	1e-25
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	1e-25
PRK06077	252	PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-25
PRK06172	253	PRK06172, PRK06172, short chain dehydrogenase; Pro	2e-25
cd08933	261	cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl	3e-25
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	4e-25
PRK12429	258	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas	5e-25
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	1e-24
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	1e-24
cd05358	253	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc	2e-24
PRK07666	239	PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-24
cd05369	249	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta	6e-24
cd05341	247	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta	9e-24
cd05352	252	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M	1e-23
PRK07478	254	PRK07478, PRK07478, short chain dehydrogenase; Pro	1e-23
PRK12828	239	PRK12828, PRK12828, short chain dehydrogenase; Pro	2e-23
PRK07677	252	PRK07677, PRK07677, short chain dehydrogenase; Pro	5e-23
cd05330	257	cd05330, cyclohexanol_reductase_SDR_c, cyclohexano	5e-23
cd05362	243	cd05362, THN_reductase-like_SDR_c, tetrahydroxynap	7e-23
PRK12935	247	PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro	9e-23
PRK08267	260	PRK08267, PRK08267, short chain dehydrogenase; Pro	1e-22
cd05326	249	cd05326, secoisolariciresinol-DH_like_SDR_c, secoi	2e-22
PRK08263	275	PRK08263, PRK08263, short chain dehydrogenase; Pro	3e-22
cd08944	246	cd08944, SDR_c12, classical (c) SDR, subgroup 12	3e-22
cd05348	257	cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro	3e-22
cd05366	257	cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol	4e-22
cd08929	226	cd08929, SDR_c4, classical (c) SDR, subgroup 4	5e-22
cd08940	258	cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge	7e-22
cd05338	246	cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena	8e-22
PRK06194	287	PRK06194, PRK06194, hypothetical protein; Provisio	2e-21
PRK05866	293	PRK05866, PRK05866, short chain dehydrogenase; Pro	2e-21
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	3e-21
cd05345	248	cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl	3e-21
cd05343	250	cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c	3e-21
cd08936	256	cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re	4e-21
cd05329	251	cd05329, TR_SDR_c, tropinone reductase-I and II (T	5e-21
cd05359	242	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c	7e-21
PRK06200	263	PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny	7e-21
PRK12827	249	PRK12827, PRK12827, short chain dehydrogenase; Pro	8e-21
cd05347	248	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena	9e-21
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	1e-20
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	1e-20
PRK08226	263	PRK08226, PRK08226, short chain dehydrogenase; Pro	1e-20
PRK06180	277	PRK06180, PRK06180, short chain dehydrogenase; Pro	2e-20
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	2e-20
PRK06500	249	PRK06500, PRK06500, short chain dehydrogenase; Pro	2e-20
PRK07063	260	PRK07063, PRK07063, short chain dehydrogenase; Pro	1e-19
TIGR03325	262	TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-	1e-19
cd08931	227	cd08931, SDR_c9, classical (c) SDR, subgroup 9	1e-19
cd05356	239	cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst	2e-19
PRK06182	273	PRK06182, PRK06182, short chain dehydrogenase; Val	3e-19
PRK07774	250	PRK07774, PRK07774, short chain dehydrogenase; Pro	3e-19
TIGR04316	250	TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben	3e-19
cd08943	250	cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al	3e-19
PRK07832	272	PRK07832, PRK07832, short chain dehydrogenase; Pro	5e-19
cd05340	236	cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li	5e-19
PRK08063	250	PRK08063, PRK08063, enoyl-(acyl carrier protein) r	6e-19
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	1e-18
PRK09242	257	PRK09242, PRK09242, tropinone reductase; Provision	1e-18
PRK08219	227	PRK08219, PRK08219, short chain dehydrogenase; Pro	1e-18
TIGR02415	254	TIGR02415, 23BDH, acetoin reductases	2e-18
PRK07035	252	PRK07035, PRK07035, short chain dehydrogenase; Pro	2e-18
PRK05867	253	PRK05867, PRK05867, short chain dehydrogenase; Pro	3e-18
PRK06914	280	PRK06914, PRK06914, short chain dehydrogenase; Pro	5e-18
cd05357	234	cd05357, PR_SDR_c, pteridine reductase (PR), class	7e-18
PRK07814	263	PRK07814, PRK07814, short chain dehydrogenase; Pro	8e-18
cd08935	271	cd08935, mannonate_red_SDR_c, putative D-mannonate	1e-17
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	2e-17
PRK08251	248	PRK08251, PRK08251, short chain dehydrogenase; Pro	2e-17
PRK05876	275	PRK05876, PRK05876, short chain dehydrogenase; Pro	2e-17
PRK07856	252	PRK07856, PRK07856, short chain dehydrogenase; Pro	2e-17
TIGR01832	248	TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena	3e-17
PRK08643	256	PRK08643, PRK08643, acetoin reductase; Validated	4e-17
PRK13394	262	PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas	4e-17
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	5e-17
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	5e-17
PRK08589	272	PRK08589, PRK08589, short chain dehydrogenase; Val	7e-17
cd08937	256	cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa	9e-17
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	1e-16
cd05367	241	cd05367, SPR-like_SDR_c, sepiapterin reductase (SP	1e-16
PRK06114	254	PRK06114, PRK06114, short chain dehydrogenase; Pro	1e-16
PRK08945	247	PRK08945, PRK08945, putative oxoacyl-(acyl carrier	1e-16
PRK09135	249	PRK09135, PRK09135, pteridine reductase; Provision	1e-16
PRK06949	258	PRK06949, PRK06949, short chain dehydrogenase; Pro	2e-16
PRK06179	270	PRK06179, PRK06179, short chain dehydrogenase; Pro	2e-16
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	2e-16
PRK07831	262	PRK07831, PRK07831, short chain dehydrogenase; Pro	3e-16
PRK07775	274	PRK07775, PRK07775, short chain dehydrogenase; Pro	3e-16
PRK12823	260	PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1	3e-16
PRK08628	258	PRK08628, PRK08628, short chain dehydrogenase; Pro	5e-16
PRK06398	258	PRK06398, PRK06398, aldose dehydrogenase; Validate	6e-16
PRK07454	241	PRK07454, PRK07454, short chain dehydrogenase; Pro	6e-16
PRK06198	260	PRK06198, PRK06198, short chain dehydrogenase; Pro	6e-16
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	8e-16
cd09761	242	cd09761, A3DFK9-like_SDR_c, Clostridium thermocell	9e-16
cd05368	241	cd05368, DHRS6_like_SDR_c, human DHRS6-like, class	1e-15
cd05354	235	cd05354, SDR_c7, classical (c) SDR, subgroup 7	1e-15
PRK06947	248	PRK06947, PRK06947, glucose-1-dehydrogenase; Provi	1e-15
PRK07062	265	PRK07062, PRK07062, short chain dehydrogenase; Pro	2e-15
PRK05693	274	PRK05693, PRK05693, short chain dehydrogenase; Pro	3e-15
PRK12937	245	PRK12937, PRK12937, short chain dehydrogenase; Pro	3e-15
PRK08217	253	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein)	4e-15
PLN02253	280	PLN02253, PLN02253, xanthoxin dehydrogenase	5e-15
PRK09072	263	PRK09072, PRK09072, short chain dehydrogenase; Pro	5e-15
PRK06128	300	PRK06128, PRK06128, oxidoreductase; Provisional	8e-15
PRK06171	266	PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro	8e-15
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	8e-15
cd05363	254	cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH),	9e-15
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	2e-14
cd05353	250	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-	3e-14
PRK08220	252	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy	3e-14
cd09763	265	cd09763, DHRS1-like_SDR_c, human dehydrogenase/red	4e-14
PRK08278	273	PRK08278, PRK08278, short chain dehydrogenase; Pro	4e-14
TIGR03971	265	TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil	5e-14
cd09805	281	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta	6e-14
PRK06935	258	PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog	1e-13
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	1e-13
PRK07069	251	PRK07069, PRK07069, short chain dehydrogenase; Val	2e-13
PRK06482	276	PRK06482, PRK06482, short chain dehydrogenase; Pro	2e-13
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	3e-13
PRK06113	255	PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro	3e-13
PRK08703	239	PRK08703, PRK08703, short chain dehydrogenase; Pro	3e-13
cd05331	244	cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz	3e-13
PRK08265	261	PRK08265, PRK08265, short chain dehydrogenase; Pro	4e-13
PRK12481	251	PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog	8e-13
COG3967	245	COG3967, DltE, Short-chain dehydrogenase involved	1e-12
PRK06101	240	PRK06101, PRK06101, short chain dehydrogenase; Pro	1e-12
PRK07060	245	PRK07060, PRK07060, short chain dehydrogenase; Pro	2e-12
PRK06523	260	PRK06523, PRK06523, short chain dehydrogenase; Pro	2e-12
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	2e-12
cd05349	246	cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl	3e-12
PRK06123	248	PRK06123, PRK06123, short chain dehydrogenase; Pro	3e-12
PRK08993	253	PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog	5e-12
PRK06484	520	PRK06484, PRK06484, short chain dehydrogenase; Val	6e-12
PRK05717	255	PRK05717, PRK05717, oxidoreductase; Validated	7e-12
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	7e-12
PRK12936	245	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote	9e-12
cd05371	252	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr	1e-11
PRK08340	259	PRK08340, PRK08340, glucose-1-dehydrogenase; Provi	2e-11
cd05373	238	cd05373, SDR_c10, classical (c) SDR, subgroup 10	2e-11
cd09806	258	cd09806, type1_17beta-HSD-like_SDR_c, human estrog	4e-11
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	5e-11
PRK07523	255	PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro	8e-11
cd11730	206	cd11730, Tthb094_like_SDR_c, Tthb094 and related p	8e-11
PRK08261	450	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein)	8e-11
PRK06125	259	PRK06125, PRK06125, short chain dehydrogenase; Pro	1e-10
cd05351	244	cd05351, XR_like_SDR_c, xylulose reductase-like, c	1e-10
PRK05993	277	PRK05993, PRK05993, short chain dehydrogenase; Pro	1e-10
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	1e-10
PRK07576	264	PRK07576, PRK07576, short chain dehydrogenase; Pro	2e-10
PRK05786	238	PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-10
cd05334	221	cd05334, DHPR_SDR_c_like, dihydropteridine reducta	2e-10
PRK07041	230	PRK07041, PRK07041, short chain dehydrogenase; Pro	3e-10
PRK07806	248	PRK07806, PRK07806, short chain dehydrogenase; Pro	4e-10
PRK12743	256	PRK12743, PRK12743, oxidoreductase; Provisional	4e-10
cd09762	243	cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro	5e-10
PLN02780	320	PLN02780, PLN02780, ketoreductase/ oxidoreductase	1e-09
PRK07985	294	PRK07985, PRK07985, oxidoreductase; Provisional	1e-09
PRK06124	256	PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro	2e-09
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	2e-09
PRK08642	253	PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein)	3e-09
PRK12824	245	PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro	4e-09
PRK07074	257	PRK07074, PRK07074, short chain dehydrogenase; Pro	7e-09
PRK09730	247	PRK09730, PRK09730, putative NAD(P)-binding oxidor	8e-09
PRK07791	286	PRK07791, PRK07791, short chain dehydrogenase; Pro	8e-09
TIGR03206	250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy	9e-09
cd02266	186	cd02266, SDR, Short-chain dehydrogenases/reductase	1e-08
cd08945	258	cd08945, PKR_SDR_c, Polyketide ketoreductase, clas	1e-08
smart00822	180	smart00822, PKS_KR, This enzymatic domain is part	2e-08
PRK12742	237	PRK12742, PRK12742, oxidoreductase; Provisional	2e-08
PRK09291	257	PRK09291, PRK09291, short chain dehydrogenase; Pro	2e-08
cd08953	436	cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup	3e-08
PRK08085	254	PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro	7e-08
PRK06720	169	PRK06720, PRK06720, hypothetical protein; Provisio	7e-08
PRK12746	254	PRK12746, PRK12746, short chain dehydrogenase; Pro	8e-08
PRK07577	234	PRK07577, PRK07577, short chain dehydrogenase; Pro	3e-07
PRK05875	276	PRK05875, PRK05875, short chain dehydrogenase; Pro	4e-07
cd05361	242	cd05361, haloalcohol_DH_SDR_c-like, haloalcohol de	4e-07
PRK12747	252	PRK12747, PRK12747, short chain dehydrogenase; Pro	5e-07
TIGR01831	239	TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote	5e-07
TIGR01829	242	TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta	6e-07
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	6e-07
PRK07102	243	PRK07102, PRK07102, short chain dehydrogenase; Pro	7e-07
cd05372	250	cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP)	9e-07
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	1e-06
PRK07097	265	PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro	1e-06
COG0623	259	COG0623, FabI, Enoyl-[acyl-carrier-protein]	2e-06
PRK08339	263	PRK08339, PRK08339, short chain dehydrogenase; Pro	2e-06
PRK07792	306	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein)	2e-06
TIGR01500	256	TIGR01500, sepiapter_red, sepiapterin reductase	2e-06
PRK08017	256	PRK08017, PRK08017, oxidoreductase; Provisional	2e-06
cd05322	257	cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy	3e-06
pfam08659	181	pfam08659, KR, KR domain	3e-06
PRK10538	248	PRK10538, PRK10538, malonic semialdehyde reductase	4e-06
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	5e-06
PRK06924	251	PRK06924, PRK06924, short chain dehydrogenase; Pro	6e-06
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	6e-06
pfam13561	239	pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote	7e-06
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	1e-05
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	1e-05
cd05274	375	cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt	3e-05
cd11731	198	cd11731, Lin1944_like_SDR_c, Lin1944 and related p	4e-05
PRK06550	235	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-04
cd08941	290	cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas	2e-04
TIGR02685	267	TIGR02685, pter_reduc_Leis, pteridine reductase	4e-04
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	5e-04
PRK05599	246	PRK05599, PRK05599, hypothetical protein; Provisio	5e-04
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	8e-04
cd05328	250	cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de	0.001
PRK09134	258	PRK09134, PRK09134, short chain dehydrogenase; Pro	0.002
PRK08416	260	PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydro	0.002
PRK12748	256	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote	0.002
PRK06483	236	PRK06483, PRK06483, dihydromonapterin reductase; P	0.002
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	0.003
PRK12744	257	PRK12744, PRK12744, short chain dehydrogenase; Pro	0.004

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score =  214 bits (547), Expect = 4e-69
 Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 11/246 (4%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKVV+ITGASSGIG+ LAY  AR  ARLVL ARRE +L EV  +   +G+P    +P 
Sbjct: 1   LQGKVVIITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECLELGAPSPHVVPL 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAY 163
           D+S +ED +  V+  ++ FG LD L+ NAG+    LF D + D+ +    M++N++G   
Sbjct: 61  DMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDR--KIMEVNYFGPVA 118

Query: 164 GTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGI 221
            T  A+P+L  +++G I+VV+S AG +  P  + Y ASK A    +++LR E    +I +
Sbjct: 119 LTKAALPHLIERSQGSIVVVSSIAGKIGVPFRTAYAASKHALQGFFDSLRAELSEPNISV 178

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
           T+V PGLI++ I                +     +S       EECA  I+ +     R 
Sbjct: 179 TVVCPGLIDTNIAMNALSGDGSMSAKMDDTTANGMS------PEECALEILKAIALRKRE 232

Query: 282 LTQPSW 287
           +     
Sbjct: 233 VFYARQ 238

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional

 Score =  186 bits (475), Expect = 3e-58
 Identities = 91/243 (37%), Positives = 134/243 (55%), Gaps = 20/243 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKVV+ITGAS GIG+ LA   AR  A+LVL AR E +L  +A +    G   AL +P DV
Sbjct: 1   GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGE-ALVVPTDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           S  E C+  ++  +  FG +D LV NAG+     F++ TD++     M +N+ G+ Y T+
Sbjct: 60  SDAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTH 119

Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVT 225
            A+P+LK ++G+I+VV+S AG    P  S Y ASK A    +++LR+E   D + +T+V 
Sbjct: 120 AALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVC 179

Query: 226 PGLIESEI------TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD 279
           PG + ++I        GK L K+   E              +   EECA+AI+ +  R  
Sbjct: 180 PGFVATDIRKRALDGDGKPLGKSPMQESK------------IMSAEECAEAILPAIARRK 227

Query: 280 RYL 282
           R L
Sbjct: 228 RLL 230

Length = 263

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score =  166 bits (422), Expect = 1e-50
 Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
            L+TGASSGIG+ +A   AR  A++VL  R E  L E+A    L G+  A+A+ ADVS  
Sbjct: 1   ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALAELAAIEALGGN--AVAVQADVSDE 58

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYGTYF 167
           ED +  V+  +E FGRLD LV NAG+      E+ T  D  +    +D+N  G    T  
Sbjct: 59  EDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDR---VLDVNLTGVFLLTRA 115

Query: 168 AIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVT 225
           A+P++K Q  G+I+ ++S AG  P P  + Y ASKAA   L  +L +E     I +  V 
Sbjct: 116 ALPHMKKQGGGRIVNISSVAGLRPLPGQAAYAASKAALEGLTRSLALELAPYGIRVNAVA 175

Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT 283
           PGL+++       L K G  E ++E+           P EE A+A+V  A     Y+T
Sbjct: 176 PGLVDTP-----MLAKLGPEEAEKELAAAIPLGRLGTP-EEVAEAVVFLASDEASYIT 227

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score =  143 bits (363), Expect = 1e-41
 Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 8/198 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR--ERQLREVADQAELMGSPFALA 101
           D++GKV L+TGASSGIG+ +A   AR  AR+V+ ARR  E     +A   +  G   A A
Sbjct: 2   DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAA 61

Query: 102 IPADVSKV-EDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFW 159
           + ADVS   E  +  V    E FGR+D LV NAG+  P    E+ T+       +D+N  
Sbjct: 62  VAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTE-EDWDRVIDVNLL 120

Query: 160 GSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
           G+   T  A+P +K  K +I+ ++S AG   PP  + Y ASKAA I L + L +E     
Sbjct: 121 GAFLLTRAALPLMK--KQRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPRG 178

Query: 219 IGITIVTPGLIESEITGG 236
           I +  V PG I++ +T  
Sbjct: 179 IRVNAVAPGYIDTPMTAA 196

Length = 251

>gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3

 Score =  142 bits (361), Expect = 1e-41
 Identities = 79/239 (33%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           VV+ITGASSGIG+  A  +A R A++VL AR    L E+A +   +G   A+A+ ADV+ 
Sbjct: 2   VVVITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREVRELGGE-AIAVVADVAD 60

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFA 168
               +   D  +E FGR+D  V NAGV     FED     +     D+N+ G  YGT  A
Sbjct: 61  AAQVERAADTAVERFGRIDTWVNNAGVAVFGRFED-VTPEEFRRVFDVNYLGHVYGTLAA 119

Query: 169 IPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDIGITIV 224
           +P+L++   G +I V S  G+   P  + Y+ASK A     E+LR E    G  I +T+V
Sbjct: 120 LPHLRRRGGGALINVGSLLGYRSAPLQAAYSASKHAVRGFTESLRAELAHDGAPISVTLV 179

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT 283
            P  + +          + +  + ++ +       P+   E  A+AIV +A    R + 
Sbjct: 180 QPTAMNTP------FFGHARSYMGKKPKPPP----PIYQPERVAEAIVRAAEHPRREVK 228

These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score =  138 bits (349), Expect = 1e-39
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 18/236 (7%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KVVLITG SSGIG  LA   A +  R++  AR   +L  + +    + +     +  DV+
Sbjct: 1   KVVLITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGE----LLNDNLEVLELDVT 56

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
             E  K  V   +E FGR+D LV NAG       E+ T I +     ++N +G    T  
Sbjct: 57  DEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEE-TSIEEVRELFEVNVFGPLRVTRA 115

Query: 168 AIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGITI 223
            +P + KQ  G+I+ V+S AG +P P +  Y ASKAA  AL E+LR+E   FG  I +TI
Sbjct: 116 FLPLMRKQGSGRIVNVSSVAGLVPTPFLGPYCASKAALEALSESLRLELAPFG--IKVTI 173

Query: 224 VTPGLIESEI--TGGKFLNKNGKLE----VDQEIRDVQISLLPVQ-PTEECAKAIV 272
           + PG + +           ++ ++       +EI++    +       E+ A  IV
Sbjct: 174 IEPGPVRTGFADNAAGSALEDPEISPYAPERKEIKENAAGVGSNPGDPEKVADVIV 229

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

 Score =  131 bits (332), Expect = 4e-37
 Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 25/248 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA---IP 103
           GK VLITG SSGIGK LA E  +  A +++VAR E +L E  ++ E   +        I 
Sbjct: 1   GKHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYIS 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGS 161
           AD+S  E+ +      +E  G  D +V  AG+    LFED T  +  +    MD+N++GS
Sbjct: 61  ADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFER---GMDVNYFGS 117

Query: 162 AYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
               +  +P +K Q  G I+ V+S A  +     S Y  SK A   L E+LR E    +I
Sbjct: 118 LNVAHAVLPLMKEQRPGHIVFVSSQAALVGIYGYSAYCPSKFALRGLAESLRQELKPYNI 177

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----PVQPTEECAKAIVNSA 275
            +++V P   ++              E + + +  +   +         EE A+ IV   
Sbjct: 178 RVSVVYPPDTDTP-----------GFEEENKTKPEETKAIEGSSGPITPEEAARIIVKGL 226

Query: 276 CRGDRYLT 283
            RG   + 
Sbjct: 227 DRGYDDVF 234

These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239

>gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  131 bits (331), Expect = 7e-37
 Identities = 69/195 (35%), Positives = 98/195 (50%), Gaps = 8/195 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV ++TGASSGIG+ +A  +A   AR+V+  R E     VA  AE++    A+A+ 
Sbjct: 2   RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA--AEILAGGRAIAVA 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA--MDINFWGS 161
           ADVS   D +  V   +E FG +D LV NAG           D+ +        +N    
Sbjct: 60  ADVSDEADVEAAVAAALERFGSVDILVNNAGTTH--RNGPLLDVDEAEFDRIFAVNVKSP 117

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
              T  A+P    +  G I+ VAS AG  P P + +YNASK A I L + L  E G D I
Sbjct: 118 YLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASKGAVITLTKALAAELGPDKI 177

Query: 220 GITIVTPGLIESEIT 234
            +  V P ++E+ + 
Sbjct: 178 RVNAVAPVVVETGLL 192

Length = 251

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score =  130 bits (330), Expect = 1e-36
 Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
             + GK  LITGASSGIG  LA + ARR   L+LVARRE +L  +A + E         I
Sbjct: 2   GPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVI 61

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
           PAD+S  E  +   D   E  G +D LV NAG      F +   + +    + +N     
Sbjct: 62  PADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE-LSLDEEEEMIQLNILALT 120

Query: 163 YGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
             T   +P + ++  G II + SAAG +P P M+ Y+A+KA  ++  E LR E  G  + 
Sbjct: 121 RLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVK 180

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR 280
           +T V PG   +E    K  +    L    E+         V   E+ A+A + +  +G R
Sbjct: 181 VTAVCPGPTRTEFFDAKGSDVY--LLSPGEL---------VLSPEDVAEAALKALEKGKR 229

Query: 281 YLTQPSW 287
            +     
Sbjct: 230 EIIPGLP 236

Length = 265

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score =  127 bits (323), Expect = 9e-36
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 20/215 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  L+TGAS GIG+ +A   A   A++V+    E     +A +    G   A  +  D
Sbjct: 4   QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE-ARVLVFD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD------ITKPAPAMDINFW 159
           VS     +  ++  +E FG LD LV NAG+    L    ++      I       D+N  
Sbjct: 63  VSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVI-------DVNLT 115

Query: 160 GSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G+      A+P + +   G+I+ ++S +G    P  + Y+A+KA  I   + L +E    
Sbjct: 116 GTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAGVIGFTKALALELASR 175

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEI 251
            GIT+  V PG I++++T  + L +  K E+ +EI
Sbjct: 176 -GITVNAVAPGFIDTDMT--EGLPEEVKAEILKEI 207

Length = 246

>gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs

 Score =  125 bits (317), Expect = 6e-35
 Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 25/238 (10%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM---GSPFALAIPA 104
           KV +ITG +SGIG   A    ++ A++ ++ R E         AEL        A  +  
Sbjct: 1   KVAIITGGASGIGLATAKLLLKKGAKVAILDRNE----NPGAAAELQAINPKVKATFVQC 56

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-MDINFWGSAY 163
           DV+  E         +E FGR+D L+ NAG++    +     +  P    +D+N  G   
Sbjct: 57  DVTSWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVIN 116

Query: 164 GTYFAIPYLKQTK----GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
            TY A+ Y+ + K    G I+ + S AG  P P+   Y+ASK   +    +L        
Sbjct: 117 TTYLALHYMDKNKGGKGGVIVNIGSVAGLYPAPQFPVYSASKHGVVGFTRSLADLLEYKT 176

Query: 220 GITIVT--PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA 275
           G+ +    PG   + +     L      E +       +   P Q  E  AKAIV   
Sbjct: 177 GVRVNAICPGFTNTPL-----LPDLVAKEAE------MLPSAPTQSPEVVAKAIVYLI 223

This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score =  124 bits (314), Expect = 2e-34
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 25/246 (10%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           +VLITG  SGIG+ LA E+A+R A++V++   E+   E A+     G         DVSK
Sbjct: 1   IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGK-VHYYKCDVSK 59

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMDINFWGSAYGTY 166
            E+         +  G +  L+ NAGVV      +  D  I K     ++N     + T 
Sbjct: 60  REEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEK---TFEVNTLAHFWTTK 116

Query: 167 FAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF--GGDIGI-- 221
             +P + +   G I+ +AS AG + P  ++ Y ASKAA +  +E+LR+E    G  GI  
Sbjct: 117 AFLPDMLERNHGHIVTIASVAGLISPAGLADYCASKAAAVGFHESLRLELKAYGKPGIKT 176

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
           T+V P  I + +  G    +                L P+   E  A+ IV +     + 
Sbjct: 177 TLVCPYFINTGMFQGVKTPRP--------------LLAPILEPEYVAEKIVRAILTNQQM 222

Query: 282 LTQPSW 287
           L  P +
Sbjct: 223 LYLPFY 228

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11

 Score =  122 bits (309), Expect = 1e-33
 Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 5/241 (2%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF--ALAIP 103
           +GKV +ITG+SSGIG   A  +AR  ARL L  R   +L E        G      L + 
Sbjct: 2   SGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEETRQSCLQAGVSEKKILLVV 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           AD+++ E     +  T+  FGRLD LV NAG++     ED  DI +    M++N     Y
Sbjct: 62  ADLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGED-QDIEEYDKVMNLNLRAVIY 120

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
            T  A+P+L +TKG+I+ V+S AG    P + +Y  SKAA         +E     + + 
Sbjct: 121 LTKLAVPHLIKTKGEIVNVSSVAGGRSFPGVLYYCISKAALDQFTRCTALELAPKGVRVN 180

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
            V+PG+I +       + +   ++     ++      P    +E A+AI   A     ++
Sbjct: 181 SVSPGVIVTGFHRRMGMPEEQYIKFLSRAKETHPLGRPGTV-DEVAEAIAFLASDASSFI 239

Query: 283 T 283
           T
Sbjct: 240 T 240

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score =  121 bits (306), Expect = 3e-33
 Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ G+V L+TGA+ GIG+ +A   A   A +++V          A+  E  G   A A  
Sbjct: 3   DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGK-ARARQ 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV      K  V   +E FGRLD LV NAG+ P+  F +  D       +D+N  G+  
Sbjct: 62  VDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWER-VIDVNLTGTFL 120

Query: 164 GTYFAIPYLKQTK-GKIIVVASAAG-WLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            T  A+P L +   G+I++ +S AG  +  P ++ Y ASKA  +     L +E      I
Sbjct: 121 LTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASKAGLVGFTRALALELAAR-NI 179

Query: 222 TI--VTPGLIESEITGGKF 238
           T+  V PG +++ + G   
Sbjct: 180 TVNSVHPGGVDTPMAGNLG 198

Length = 251

>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR

 Score =  120 bits (303), Expect = 6e-33
 Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 4/193 (2%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKV L+TGASSGIG+  A   A   A + + ARR  +L  +AD+ E  G   AL +  
Sbjct: 1   LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGK-ALVLEL 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+  +     V+ T+E  GRLD LV NAG++ +   ED  D T     +D N  G  Y 
Sbjct: 60  DVTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVED-ADTTDWTRMIDTNLLGLMYT 118

Query: 165 TYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
           T+ A+P+   + KG I+ ++S AG +     + YNA+K    A  E LR E     + + 
Sbjct: 119 THAALPHHLLRNKGTIVNISSVAGRVAVRNSAVYNATKFGVNAFSEGLRQEVTERGVRVV 178

Query: 223 IVTPGLIESEITG 235
           ++ PG +++E+  
Sbjct: 179 VIEPGTVDTELRD 191

CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score =  119 bits (300), Expect = 2e-32
 Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 10/196 (5%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
              + GKV LITGASSGIG+  A   A   A++VL ARRE +L  +AD+   +G+  ALA
Sbjct: 1   MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE---IGAGAALA 57

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFW 159
           +  DV+     +  ++   E FGR+D LV NAG+      ++    D  +    +D N  
Sbjct: 58  LALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDR---MIDTNVK 114

Query: 160 GSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG- 217
           G   GT   +P + + K G II + S AG  P P  + Y A+KAA  A    LR E  G 
Sbjct: 115 GLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGT 174

Query: 218 DIGITIVTPGLIESEI 233
            I +T+++PGL+E+  
Sbjct: 175 GIRVTVISPGLVETTE 190

Length = 246

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score =  119 bits (301), Expect = 4e-32
 Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 29/256 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AGKVV++TGA+ GIG  LA     R A+L LV   E +L  +A  AEL G    L + 
Sbjct: 6   SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALA--AELGGDDRVLTVV 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDINF 158
           ADV+ +   +   +  +E FG +D +V NAG+           + +  P      +D+N 
Sbjct: 64  ADVTDLAAMQAAAEEAVERFGGIDVVVANAGIAS------GGSVAQVDPDAFRRVIDVNL 117

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
            G  +     +P L + +G ++ V+S A +   P M+ Y ASKA   A    LR+E    
Sbjct: 118 LGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGMAAYCASKAGVEAFANALRLEVAHH 177

Query: 219 IGIT--IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-----VQPTEECAKAI 271
            G+T        I++++      +    L   +E+R    + LP         E+CA A 
Sbjct: 178 -GVTVGSAYLSWIDTDLVRDADAD----LPAFRELR----ARLPWPLRRTTSVEKCAAAF 228

Query: 272 VNSACRGDRYLTQPSW 287
           V+   R  R +  P W
Sbjct: 229 VDGIERRARRVYAPRW 244

Length = 296

>gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional

 Score =  119 bits (301), Expect = 1e-31
 Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 12/191 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +VV+ITGAS+G+G+  A  +ARR A++VL+AR E  L  +A +    G   ALA+ ADV
Sbjct: 8   RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE-ALAVVADV 66

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFWGSAY 163
           +  E  +   D   E  G +D  V NA V    +F  + D+T P       ++ + G  +
Sbjct: 67  ADAEAVQAAADRAEEELGPIDTWVNNAMVT---VFGPFEDVT-PEEFRRVTEVTYLGVVH 122

Query: 164 GTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD---I 219
           GT  A+ +++   +G II V SA  +   P  S Y A+K A     ++LR E   D   +
Sbjct: 123 GTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPV 182

Query: 220 GITIVTPGLIE 230
            +T+V P  + 
Sbjct: 183 SVTMVQPPAVN 193

Length = 334

>gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional

 Score =  116 bits (292), Expect = 6e-31
 Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 24/246 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GKVV ITG + GIG   A   A   AR+ +    E   +E A  AEL      +  P
Sbjct: 2   DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA--AEL---GLVVGGP 56

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+       F+D      G +D LV NAGV+P+  F D  D       +D+N +G   
Sbjct: 57  LDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRR-ILDVNVYGVIL 115

Query: 164 GTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           G+  A P  + + +G ++ VAS AG +P P M+ Y ASK A +   +  R+E  G  + +
Sbjct: 116 GSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFTDAARLELRGTGVHV 175

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
           ++V P  + +E+  G    K  K                V+P E+ A AIV +  +    
Sbjct: 176 SVVLPSFVNTELIAGTGGAKGFK---------------NVEP-EDVAAAIVGTVAKPRPE 219

Query: 282 LTQPSW 287
           +  P  
Sbjct: 220 VRVPRA 225

Length = 273

>gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional

 Score =  115 bits (291), Expect = 6e-31
 Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 4/180 (2%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           V+ITGA+SG+G+ +A  +AR   RL L    E    E        G         DV   
Sbjct: 3   VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDY 61

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI 169
                      E +G +D +V NAGV     FE+ + +      + IN  G   G    +
Sbjct: 62  SQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELS-LEDWDWQIAINLMGVVKGCKAFL 120

Query: 170 PYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG 227
           P  K+ K G+I+ +AS AG +  P MS YN +KA  +AL ETL VE   D IG+ +V P 
Sbjct: 121 PLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPS 180

Length = 270

>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional

 Score =  112 bits (283), Expect = 8e-30
 Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 6/197 (3%)

Query: 41  NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFAL 100
            A ++AGK  L+TGA+ G+G   A   A   A +        + RE+A   E  G   A 
Sbjct: 1   MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGR-AH 59

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
           AI AD++     + F D      G LD LV NAG+       +    T  A  M++N  G
Sbjct: 60  AIAADLADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDA-VMNVNVRG 118

Query: 161 SAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
           +      A+P+L+ +  G+I+ +AS       P++  Y ASK A I +  +L  E GG  
Sbjct: 119 TFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAVIGMTRSLARELGGR- 177

Query: 220 GITI--VTPGLIESEIT 234
           GIT+  + PGL  +E T
Sbjct: 178 GITVNAIAPGLTATEAT 194

Length = 250

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score =  112 bits (283), Expect = 9e-30
 Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV L+T ASSGIG  +A   AR  AR+ + AR    L E A      G    LA+ AD+
Sbjct: 1   GKVALVTAASSGIGLAIARALAREGARVAICARNRENL-ERAASELRAGGAGVLAVVADL 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYG 164
           +  ED    V+   + FGR+D LV NAG  P   F + T  D  +   A D+        
Sbjct: 60  TDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLE---AFDLKLLSVIRI 116

Query: 165 TYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
               +P +K+   G+I+ ++S     P P +   N ++A  I L +TL  E   D G+T+
Sbjct: 117 VRAVLPGMKERGWGRIVNISSLTVKEPEPNLVLSNVARAGLIGLVKTLSRELAPD-GVTV 175

Query: 224 --VTPGLIESE 232
             V PG I++E
Sbjct: 176 NSVLPGYIDTE 186

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6

 Score =  112 bits (281), Expect = 1e-29
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 32/243 (13%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           VLITGASSGIG+ LA E+A+    + L ARR  +L E+  +         +    DV+  
Sbjct: 1   VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLNPNPSVEVE-ILDVTDE 59

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGV-----VPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           E  +  +       G LD ++ NAGV     +    F+ + +       +D N  G+A  
Sbjct: 60  ERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET------IDTNLLGAAAI 113

Query: 165 TYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGIT 222
              A+P  +    G +++++S A     P  + Y+ASKAA  +L E+LR +     I +T
Sbjct: 114 LEAALPQFRAKGRGHLVLISSVAALRGLPGAAAYSASKAALSSLAESLRYDVKKRGIRVT 173

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
           ++ PG I++ +T   F                  ++  +   E+ AK I  +  +G    
Sbjct: 174 VINPGFIDTPLTANMF------------------TMPFLMSVEQAAKRIYKAIKKGAAEP 215

Query: 283 TQP 285
           T P
Sbjct: 216 TFP 218

These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional

 Score =  109 bits (274), Expect = 1e-28
 Identities = 64/200 (32%), Positives = 103/200 (51%), Gaps = 23/200 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GKV ++TG +SGIG  +A  +A + AR+ L+ R E    +VA+ A  +    A  + 
Sbjct: 12  DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE----DVAEVAAQLLGGNAKGLV 67

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            DVS  +  +  V   +  FGR+D LV +AGV  +   ED +    D T     +DIN  
Sbjct: 68  CDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKT-----IDINLK 122

Query: 160 GS-----AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           GS     A G +     +    GKI+ +AS AG +   R   Y ASKA  + + + L +E
Sbjct: 123 GSFLMAQAVGRHM----IAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMTKVLALE 178

Query: 215 FGG-DIGITIVTPGLIESEI 233
           +G   I +  ++P ++ +E+
Sbjct: 179 WGPYGITVNAISPTVVLTEL 198

Length = 255

>gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score =  109 bits (274), Expect = 2e-28
 Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 34/240 (14%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE--VADQAELMGSPFALAIPA 104
           GKV L+TGAS GIG+ +A   A + A +V+         E  VA+   L G   ALA+  
Sbjct: 5   GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGK--ALAVQG 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFW 159
           DVS  E  +  VD     FG +D LV NAG+    L      ED+  +      +D N  
Sbjct: 63  DVSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRV------IDTNLT 116

Query: 160 GSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G    T      + KQ  G+II ++S  G +  P  + Y ASKA  I   ++L  E    
Sbjct: 117 GVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVIGFTKSLARELASR 176

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            GIT+  V PG IE+++T            + +++++  ++ +P+    QP EE A A+ 
Sbjct: 177 -GITVNAVAPGFIETDMT----------DALPEDVKEAILAQIPLGRLGQP-EEIASAVA 224

Length = 248

>gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR

 Score =  105 bits (265), Expect = 2e-27
 Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGAS GIG  +A   AR   R+ L  R    L      A         A+P D  
Sbjct: 1   KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLA-----ALSASGGDVEAVPYDAR 55

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMDINFWGSAYGT 165
             ED +  VD   + FGR+D LV NAG+       + +D  +        IN    A  T
Sbjct: 56  DPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEA---HFSINVIAPAELT 112

Query: 166 YFAIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR-VEFGGDIGITI 223
              +P L++   G+++ + S +G       + Y+ASK A  AL   LR   +   + ++ 
Sbjct: 113 RALLPALREAGSGRVVFLNSLSGKRVLAGNAGYSASKFALRALAHALRQEGWDHGVRVSA 172

Query: 224 VTPG 227
           V PG
Sbjct: 173 VCPG 176

This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score =  106 bits (266), Expect = 2e-27
 Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 31/237 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGAS GIG+ +A   A   A++ +  R E    E  ++ + +G   A A+ ADVS
Sbjct: 1   KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIKALGGNAA-ALEADVS 59

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
             E  +  V+     FG +D LV NAG+    L      ED+  +      +++N  G  
Sbjct: 60  DREAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAV------INVNLTGVF 113

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             T   I   +K+  G+II ++S  G +  P  + Y ASKA  I   ++L  E     GI
Sbjct: 114 NVTQAVIRAMIKRRSGRIINISSVVGLIGNPGQANYAASKAGVIGFTKSLAKELASR-GI 172

Query: 222 TI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           T+  V PG I++++T            + +++++  +  +P+     P EE A A+ 
Sbjct: 173 TVNAVAPGFIDTDMTD----------ALPEKVKEKILKQIPLGRLGTP-EEVANAVA 218

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  106 bits (266), Expect = 2e-27
 Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 9/196 (4%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALA 101
             + GKV ++TGAS GIG+ +A   A+  A++V+     E   +E+ ++ +  G   A+A
Sbjct: 1   MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG-DAIA 59

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMDINFW 159
           + ADVS  ED ++ V+  +E FG++D LV NAG+    L  D TD    +    +D+N  
Sbjct: 60  VKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDR---VIDVNLT 116

Query: 160 GSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G    T +A+PY+ + K G I+ ++S  G +       Y+ASK A  A  + L  E    
Sbjct: 117 GVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAVNAFTKALAKELAPS 176

Query: 219 -IGITIVTPGLIESEI 233
            I +  V PG I++E+
Sbjct: 177 GIRVNAVAPGAIDTEM 192

Length = 247

>gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional

 Score =  107 bits (269), Expect = 3e-27
 Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G VV+ITGASSGIG+  A  +ARR ARLVL AR E  L+ VA++   +G+   L +P DV
Sbjct: 7   GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE-VLVVPTDV 65

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  K          GR+D  V N GV  +  FE+ T I      +  N  G     +
Sbjct: 66  TDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEE-TPIEAHEQVIQTNLIGYMRDAH 124

Query: 167 FAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG--DIGITI 223
            A+P   KQ  G  I + S  G+   P  + Y+ASK       E LR E     DI +  
Sbjct: 125 AALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCD 184

Query: 224 VTPGLIES 231
           V P  +++
Sbjct: 185 VYPAFMDT 192

Length = 330

>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional

 Score =  105 bits (264), Expect = 4e-27
 Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAI 102
           D+ GKVV+ITG S+G+G+ +A  + + +A++V+  R  E +  +VA++ +  G   A+A+
Sbjct: 4   DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGE-AIAV 62

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV---VP---MCLFEDYTDITKPAPAMDI 156
             DV+   D  + +   ++ FG LD ++ NAG+   VP   M L ED+  +      ++ 
Sbjct: 63  KGDVTVESDVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSL-EDWNKV------INT 115

Query: 157 NFWGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           N  G+  G+  AI Y  +   KG II ++S    +P P    Y ASK     + ETL +E
Sbjct: 116 NLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASKGGVKLMTETLAME 175

Query: 215 FGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
           +    I +  + PG I + I   KF         D + R    S++P+    +P E  A 
Sbjct: 176 YAPKGIRVNNIGPGAINTPINAEKF--------ADPKQRADVESMIPMGYIGKPEEIAAV 227

Query: 270 A 270
           A
Sbjct: 228 A 228

Length = 261

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  105 bits (264), Expect = 5e-27
 Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 13/193 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPAD 105
           G+V L+TGA+ G+G+ +A   AR  A +V+  R + +   E+ +  E +G   A A+ AD
Sbjct: 6   GRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRR-AQAVQAD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD---ITKPAPAMDINFWGSA 162
           V+     +  V   +E FGR+D LV NAG+       D +D          +D+N  G  
Sbjct: 65  VTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDE----VIDVNLSGVF 120

Query: 163 YGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
           +     +P +++ + G+I+ ++S AG    P  S Y A+KA  + L + L  E   + GI
Sbjct: 121 HLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAGLVGLTKALARE-LAEYGI 179

Query: 222 TI--VTPGLIESE 232
           T+  V PG I+++
Sbjct: 180 TVNMVAPGDIDTD 192

Length = 249

>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional

 Score =  105 bits (263), Expect = 6e-27
 Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKVV+++G   G+G+ LA   AR  A +VL AR   +L EVA + + +G   ALA+P D
Sbjct: 4   KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRR-ALAVPTD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYG 164
           ++  + C + V + +E FGR+D LV NA  VP M    D  D       +++N  G+   
Sbjct: 63  ITDEDQCANLVALALERFGRVDALVNNAFRVPSMKPLAD-ADFAHWRAVIELNVLGTLRL 121

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
           T    P L ++ G I+++ S       P+   Y  +K A +A  ++L  E G   I +  
Sbjct: 122 TQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKGALLAASQSLATELGPQGIRVNS 181

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQE-IRDV--QISLLPVQPTE-ECAKAIV 272
           V PG I  +   G F ++ GK  V  E I       S L   PT+ E A A++
Sbjct: 182 VAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDEVASAVL 234

Length = 258

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score =  108 bits (273), Expect = 9e-27
 Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 19/203 (9%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
               +GK+V++TGA SGIG+  A  +AR  A +V     E      A+     G   A A
Sbjct: 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG-AVAHA 368

Query: 102 IPADVSKVEDCKHFVD-VTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINF 158
              DVS  +  + F + V  EH G  D +V NAG+     F D +  D  +    +D+N 
Sbjct: 369 YRVDVSDADAMEAFAEWVRAEH-GVPDIVVNNAGIGMAGGFLDTSAEDWDR---VLDVNL 424

Query: 159 WGSAYGT-YFAIPYLKQ-----TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           WG  +G   F     +Q     T G I+ VASAA + P   +  Y  SKAA + L E LR
Sbjct: 425 WGVIHGCRLFG----RQMVERGTGGHIVNVASAAAYAPSRSLPAYATSKAAVLMLSECLR 480

Query: 213 VEFGG-DIGITIVTPGLIESEIT 234
            E     IG+T + PG +++ I 
Sbjct: 481 AELAAAGIGVTAICPGFVDTNIV 503

Length = 582

>gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional

 Score =  104 bits (261), Expect = 9e-27
 Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AG+V ++TGA SGIG+  A  +AR  AR+V+  R       VA  A +     A A  
Sbjct: 2   RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA--AAIAAGGRAFARQ 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV   E  +  VD     +GRLD LV NAG           +    A  M +N  G   
Sbjct: 60  GDVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDA-VMRVNVGGVFL 118

Query: 164 GTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
              +AIP + +Q  G I+  AS          + Y ASK A  +L   + ++   D I +
Sbjct: 119 WAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIASLTRAMALDHATDGIRV 178

Query: 222 TIVTPGLIES 231
             V PG I++
Sbjct: 179 NAVAPGTIDT 188

Length = 252

>gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional

 Score =  104 bits (262), Expect = 9e-27
 Identities = 70/189 (37%), Positives = 94/189 (49%), Gaps = 8/189 (4%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           V ITGASSGIG+ LA EYAR+ A L LVARR   L+  A  A L  +       ADV   
Sbjct: 5   VFITGASSGIGQALAREYARQGATLGLVARRTDALQAFA--ARLPKAARVSVYAADVRDA 62

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY--F 167
           +         +   G  D ++ NAG+    L E+  D+      MD N++G    T+  F
Sbjct: 63  DALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMV-ATFQPF 121

Query: 168 AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVT-- 225
             P     +G ++ +AS AG    P    Y+ASKAA I   E+LRVE     G+ +VT  
Sbjct: 122 IAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAAIKYLESLRVELRPA-GVRVVTIA 180

Query: 226 PGLIESEIT 234
           PG I + +T
Sbjct: 181 PGYIRTPMT 189

Length = 257

>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional

 Score =  104 bits (262), Expect = 1e-26
 Identities = 72/210 (34%), Positives = 98/210 (46%), Gaps = 29/210 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK  L+TG S G+G  +A       AR+VL AR+  +L E A   E +G   AL I 
Sbjct: 9   DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGID-ALWIA 67

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----MDINFW 159
           ADV+   D +   + T+E FG +D LV NAG       ED+     P  A    M++N  
Sbjct: 68  ADVADEADIERLAEETLERFGHVDILVNNAGATWGAPAEDH-----PVEAWDKVMNLNVR 122

Query: 160 GSAYGTYF-------AIPYLKQTKGKIIVVASAAGWL--PPPRMSF--YNASKAAKIALY 208
           G      F           + +  G+II VAS AG    PP  M    YN SK A I   
Sbjct: 123 G-----LFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIAYNTSKGAVINFT 177

Query: 209 ETLRVEFGGDIGITI--VTPGLIESEITGG 236
             L  E+ G  GI +  + PG   +++T G
Sbjct: 178 RALAAEW-GPHGIRVNAIAPGFFPTKMTRG 206

Length = 259

>gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  103 bits (259), Expect = 2e-26
 Identities = 77/242 (31%), Positives = 115/242 (47%), Gaps = 16/242 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARL-VLVARRERQLREVADQAELMGSPFALAIPAD 105
           GKV LITG + GIG+ +A  + R  A++ VL    E + +E+ ++           I  D
Sbjct: 7   GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKG-------VFTIKCD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V   +  K   +V  + FGR+D LV NAG++ +  FE++ D  K    + IN  G+ Y T
Sbjct: 60  VGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEF-DEEKYNKMIKINLNGAIYTT 118

Query: 166 YFAIPYLK-QTKGKIIVVASAAGWLPPPR-MSFYNASKAAKIALYETLRVEFGG-DIGIT 222
           Y  +P LK    G I+ +AS AG        +FY  +KA  I L   L  E G   I + 
Sbjct: 119 YEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAITKAGIIILTRRLAFELGKYGIRVN 178

Query: 223 IVTPGLIESEIT-GGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
            V PG +E+++T  GK   +  KL      + V   L      E+ A  ++  A    RY
Sbjct: 179 AVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV---LKTTGKPEDIANIVLFLASDDARY 235

Query: 282 LT 283
           +T
Sbjct: 236 IT 237

Length = 255

>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase

 Score =  103 bits (258), Expect = 3e-26
 Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK  L+TGA+SGIG  +A   A   A +V+    E      A  A   G    + +PADV
Sbjct: 1   GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGDAGGS-VIYLPADV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +K ++    +      FG LD LV NAG+  +   E++         + +    + +   
Sbjct: 60  TKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEF-PPEDWDRIIAVMLTSAFHTIR 118

Query: 167 FAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI-- 223
            A+P++K+   G+II +ASA G +  P  S Y A+K   I L + L +E   + GIT+  
Sbjct: 119 AALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLIGLTKVLALE-VAEHGITVNA 177

Query: 224 VTPG-----LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
           + PG     L+E +I       K   +  +Q IR+V   +L  QPT
Sbjct: 178 ICPGYVRTPLVEKQIAD---QAKTRGIPEEQVIREV---MLKGQPT 217

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score =  107 bits (269), Expect = 4e-26
 Identities = 62/189 (32%), Positives = 86/189 (45%), Gaps = 16/189 (8%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKVVLITGASSGIG+  A + A   A + LVAR    L E+  +    G   A A   
Sbjct: 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGT-AHAYTC 427

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAG-------VVPMCLFEDYTDITKPAPAMDIN 157
           D++      H V   +   G +D+LV NAG             F DY         M +N
Sbjct: 428 DLTDSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYER------TMAVN 481

Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           ++G+       +P++ ++  G ++ V+S       PR S Y ASKAA  A  +    E  
Sbjct: 482 YFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVASKAALDAFSDVAASETL 541

Query: 217 GDIGITIVT 225
            D GIT  T
Sbjct: 542 SD-GITFTT 549

Length = 657

>gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional

 Score =  101 bits (253), Expect = 1e-25
 Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 4/191 (2%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV LITG S GIG  +A        ++ + AR +++L E A  AEL      L + AD
Sbjct: 5   KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA--AELNNKGNVLGLAAD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V    D +  VD  +  FG LD L+ NAGV      E+ T   +    +D N  G+ Y  
Sbjct: 63  VRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELT-PEEWRLVIDTNLTGAFYTI 121

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGITIV 224
             A+P LK+  G II ++S AG       + YNASK   +   E   ++     I ++ +
Sbjct: 122 KAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTI 181

Query: 225 TPGLIESEITG 235
            PG + +   G
Sbjct: 182 MPGSVATHFNG 192

Length = 237

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score =  102 bits (255), Expect = 1e-25
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 32/205 (15%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G  VL+TG +SGIG+ +A  +A   AR+ +    E  L   A +          A  
Sbjct: 8   PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAK---VTATV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM--------- 154
           ADV+     +   D  +E FG LD LV NAG            I  P   +         
Sbjct: 65  ADVADPAQVERVFDTAVERFGGLDVLVNNAG------------IAGPTGGIDEITPEQWE 112

Query: 155 ---DINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYE 209
               +N  G  Y    A+P LK +   G II ++S AG L  P  + Y ASK A + L +
Sbjct: 113 QTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVVGLVK 172

Query: 210 TLRVEFGGDIGITI--VTPGLIESE 232
           +L +E  G +GI +  + PG++   
Sbjct: 173 SLAIEL-GPLGIRVNAILPGIVRGP 196

Length = 264

>gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score =  100 bits (252), Expect = 2e-25
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 16/197 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPF 98
            +  KVV++TG+  GIG+ +A   A+  + +V+ A++  +     L+ V +     G   
Sbjct: 3   SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENG---GE-- 57

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMDI 156
            + + ADVS  E C+     T++ +G  D LV NAG+     F +  D  I K    +  
Sbjct: 58  GIGVLADVSTREGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDK---HIST 114

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           +F    Y +      +++  G I+ +AS AG  P   +S Y A KAA I L + L +E  
Sbjct: 115 DFKSVIYCSQELAKEMREG-GAIVNIASVAGIRPAYGLSIYGAMKAAVINLTKYLALELA 173

Query: 217 GDIGITIVTPGLIESEI 233
             I +  + PG +++++
Sbjct: 174 PKIRVNAIAPGFVKTKL 190

Length = 252

>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional

 Score =  100 bits (252), Expect = 2e-25
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 35/243 (14%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           +GKV L+TG ++GIG+  A  +AR  A++V+  R      E        G   AL +  D
Sbjct: 6   SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGE-ALFVACD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----------MD 155
           V++  + K  V+ T+  +GRLD+   NAG+          +I +   A          M 
Sbjct: 65  VTRDAEVKALVEQTIAAYGRLDYAFNNAGI----------EIEQGRLAEGSEAEFDAIMG 114

Query: 156 INFWGSAYGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           +N  G      + IP  L Q  G I+  AS AG    P+MS Y ASK A I L ++  +E
Sbjct: 115 VNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIE 174

Query: 215 FG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
           +    I +  V P +I++++    +       E D    +   ++ PV    +  EE A 
Sbjct: 175 YAKKGIRVNAVCPAVIDTDMFRRAY-------EADPRKAEFAAAMHPVGRIGKV-EEVAS 226

Query: 270 AIV 272
           A++
Sbjct: 227 AVL 229

Length = 253

>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR

 Score =  100 bits (251), Expect = 3e-25
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 1/185 (0%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           A KVV++TG S GIG+ +   +    A++V  AR E   + +  +    G      +P D
Sbjct: 8   ADKVVIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKFVPCD 67

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+K ED K  + VT+E FGR+D LV NAG  P     D T   +    +++N       +
Sbjct: 68  VTKEEDIKTLISVTVERFGRIDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFLAS 127

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV-EFGGDIGITIV 224
            +A+P+L++++G II ++S  G +   + + Y A+K A  A+ + L V E    + +  +
Sbjct: 128 KYALPHLRKSQGNIINLSSLVGSIGQKQAAPYVATKGAITAMTKALAVDESRYGVRVNCI 187

Query: 225 TPGLI 229
           +PG I
Sbjct: 188 SPGNI 192

These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score =   99 bits (250), Expect = 4e-25
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 17/194 (8%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSK 108
            L+TGAS GIG+ +A + A+  A++++  R  E    EV ++ +  G   AL +  DVS 
Sbjct: 1   ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVK-ALGVVCDVSD 59

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSAY 163
            ED K  V+   E  G +D LV NAG+    L      ED+  +      +D N  G   
Sbjct: 60  REDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAV------IDTNLTGVFN 113

Query: 164 GTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
            T   +   +KQ  G+II ++S  G +     + Y ASKA  I   ++L  E      IT
Sbjct: 114 LTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVIGFTKSLAKELASR-NIT 172

Query: 223 --IVTPGLIESEIT 234
              V PG I++++T
Sbjct: 173 VNAVAPGFIDTDMT 186

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional

 Score =  100 bits (251), Expect = 5e-25
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 21/227 (9%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV L+TGA+SGIG  +A   A+  A++V+    +      A+  +  G   A+ +  DV
Sbjct: 4   GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGK-AIGVAMDV 62

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAG---VVPMCLF--EDYTDITKPAPAMDINFWGS 161
           +  E     +D  +E FG +D LV NAG   V P+  F  E +  +      + I   G+
Sbjct: 63  TDEEAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKM------IAIMLDGA 116

Query: 162 AYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
              T  A+P +K    G+II +AS  G +     + Y ++K   I L + + +E G   G
Sbjct: 117 FLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLIGLTKVVALE-GATHG 175

Query: 221 IT--IVTPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLPVQP 263
           +T   + PG +++ +   +   L K   +  ++ + DV   LLP+ P
Sbjct: 176 VTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDV---LLPLVP 219

Length = 258

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 96.5 bits (241), Expect = 1e-24
 Identities = 49/172 (28%), Positives = 70/172 (40%), Gaps = 12/172 (6%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRAR-LVLVARRER--QLREVADQAELMGSPFALAIPA 104
             VLITG + G+G  LA   A   AR LVLV+RR       E+  + E +G+        
Sbjct: 1   GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAE-VTVAAC 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           DV+  +     +       G LD +V NAGV+     E+ T     +    +     G+ 
Sbjct: 60  DVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFER---VLAPKVTGAW 116

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
                         G  ++ +S AG L  P  + Y A+ AA  AL E  R E
Sbjct: 117 NLHELTRD---LDLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 14/193 (7%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K VLITGASSGIG+  A  +A+  A+L+L  RR  +L+E+AD+         L +  DVS
Sbjct: 1   KTVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFPVKVLPLQLDVS 60

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV------VPMCLFEDYTDITKPAPAMDINFWGS 161
             E  +  ++   E F  +D LV NAG+            ED+  +      +D N  G 
Sbjct: 61  DRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETM------IDTNVKGL 114

Query: 162 AYGTYFAIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDI 219
              T   +P +    +G II + S AG  P    + Y A+KAA       LR +  G  I
Sbjct: 115 LNVTRLILPIMIARNQGHIINLGSIAGRYPYAGGNVYCATKAAVRQFSLNLRKDLIGTGI 174

Query: 220 GITIVTPGLIESE 232
            +T + PGL+E+E
Sbjct: 175 RVTNIEPGLVETE 187

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 77/236 (32%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPA 104
            GKV L+TGASSGIGK +A   A   A +V+  R +     EV ++ + +G   A+A+ A
Sbjct: 2   KGKVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEEIKAVGG-KAIAVQA 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           DVSK ED        ++ FG LD LV NAG+       + T  D  K    +D+N  G  
Sbjct: 61  DVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNK---VIDVNLTGQF 117

Query: 163 YGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
                AI   +++K  GKII ++S    +P P    Y ASK     + +TL  E+    I
Sbjct: 118 LCAREAIKRFRKSKIKGKIINMSSVHEKIPWPGHVNYAASKGGVKMMTKTLAQEYAPKGI 177

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIV 272
            +  + PG I + I    +         D E R   +SL+P   +   EE A A  
Sbjct: 178 RVNAIAPGAINTPINAEAW--------DDPEQRADLLSLIPMGRIGEPEEIAAAAA 225

GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
           A+ + GK  LITGA  GIG+ +A   A+    + L+AR E  L+ VA++ E  G    +A
Sbjct: 2   AQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIA 61

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDI 156
             ADVS  E+    ++      G +D L+ NAG+     F      ++  I      + +
Sbjct: 62  -TADVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKI------IQV 114

Query: 157 NFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G  Y T   +P + + + G II ++S AG       S Y+ASK   + L E+L  E 
Sbjct: 115 NLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGVLGLTESLMQEV 174

Query: 216 -GGDIGITIVTPGLIESEI 233
              +I +T +TP  + +++
Sbjct: 175 RKHNIRVTALTPSTVATDM 193

Length = 239

>gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR

 Score = 96.9 bits (242), Expect = 6e-24
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 10/193 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV  ITG  +GIGK +A  +A   A + +  R+   L   A++        A  I  D
Sbjct: 2   KGKVAFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSATGGRAHPIQCD 61

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAY 163
           V   E  +  VD T++ FG++D L+ NA    +   E    ++       +DI+  G+  
Sbjct: 62  VRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAE---SLSPNGFKTVIDIDLNGTFN 118

Query: 164 GTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            T      L + K  G I+ +++   +   P      A+KA   AL  +L VE+G   GI
Sbjct: 119 TTKAVGKRLIEAKHGGSILNISATYAYTGSPFQVHSAAAKAGVDALTRSLAVEWGPY-GI 177

Query: 222 TI--VTPGLIESE 232
            +  + PG I + 
Sbjct: 178 RVNAIAPGPIPTT 190

TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249

>gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 96.7 bits (241), Expect = 9e-24
 Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE----RQLREVADQAELMGSPFA 99
            + GKV ++TG + G+G   A       A++VL    +        E+ D A        
Sbjct: 2   RLKGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAELGDAARF------ 55

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW 159
                DV+  +     VD   E FGRLD LV NAG++     E  T + +    +DIN  
Sbjct: 56  --FHLDVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTT-LEEWRRLLDINLT 112

Query: 160 GSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG- 217
           G   GT   IP +K+   G II ++S  G +  P ++ YNASK A   L ++  +E    
Sbjct: 113 GVFLGTRAVIPPMKEAGGGSIINMSSIEGLVGDPALAAYNASKGAVRGLTKSAALECATQ 172

Query: 218 --DIGITIVTPGLIESEIT 234
              I +  V PG I + +T
Sbjct: 173 GYGIRVNSVHPGYIYTPMT 191

This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247

>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs

 Score = 96.2 bits (240), Expect = 1e-23
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 17/222 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAI 102
            + GKV ++TG S GIG  +A   A   A + ++     R   +  + A+  G     A 
Sbjct: 5   SLKGKVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTK-AY 63

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
             DVS  E  +       + FG++D L+ NAG+       DYT   +    +D+N  G  
Sbjct: 64  KCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYT-YEQWNKVIDVNLNGVF 122

Query: 163 Y-GTYFAIPYLKQTKGKIIVVASAAGWLP--PPRMSFYNASKAAKIALYETLRVEFGGD- 218
                 A  + KQ KG +I+ AS +G +   P   + YNASKAA I L ++L VE+    
Sbjct: 123 NCAQAAAKIFKKQGKGSLIITASMSGTIVNRPQPQAAYNASKAAVIHLAKSLAVEWAKYF 182

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP 260
           I +  ++PG I++++T            VD+E+R    S +P
Sbjct: 183 IRVNSISPGYIDTDLTD----------FVDKELRKKWESYIP 214

NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252

>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional

 Score = 96.2 bits (240), Expect = 1e-23
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV +ITGASSGIG+  A  +AR  A++V+ ARR+ +L ++  +    G   A+A+  DV
Sbjct: 6   GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGE-AVALAGDV 64

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPA--PAMDINFWGSAY 163
                 K  V + +E FG LD    NAG +  M       +++       +  N   +  
Sbjct: 65  RDEAYAKALVALAVERFGGLDIAFNNAGTLGEMG---PVAEMSLEGWRETLATNLTSAFL 121

Query: 164 GTYFAIP-YLKQTKGKIIVVASAAGW-LPPPRMSFYNASKAAKIALYETLRVEFG 216
           G    IP  L +  G +I  ++  G     P M+ Y ASKA  I L + L  E+G
Sbjct: 122 GAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAASKAGLIGLTQVLAAEYG 176

Length = 254

>gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional

 Score = 95.2 bits (237), Expect = 2e-23
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 16/198 (8%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR----ERQLREVADQAELMGSP 97
              + GKVV ITG   G+G+  A   A R AR+ L+ R      + L  V   A  +G  
Sbjct: 2   EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGG- 60

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
                  D+   +  +  VD     FGRLD LV  AG        D    T       +N
Sbjct: 61  ------IDLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDR-MYGVN 113

Query: 158 FWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              +   +  A+P L  +  G+I+ + + A     P M  Y A+KA    L E L  E  
Sbjct: 114 VKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAAKAGVARLTEALAAEL- 172

Query: 217 GDIGITI--VTPGLIESE 232
            D GIT+  V P +I++ 
Sbjct: 173 LDRGITVNAVLPSIIDTP 190

Length = 239

>gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional

 Score = 94.7 bits (236), Expect = 5e-23
 Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 28/204 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KVV+ITG SSG+GK +A  +A   A +V+  R + +L E   + E       L +  DV
Sbjct: 1   EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQ-VLTVQMDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY--- 163
              ED +  V+   E FGR+D L+ NA    +C          PA  + +N W S     
Sbjct: 60  RNPEDVQKMVEQIDEKFGRIDALINNAAGNFIC----------PAEDLSVNGWNSVIDIV 109

Query: 164 --GTYFAIPYL------KQTKGKII-VVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
             GT++    +      K  KG II +VA+ A W   P +    A+KA  +A+  TL VE
Sbjct: 110 LNGTFYCSQAVGKYWIEKGIKGNIINMVATYA-WDAGPGVIHSAAAKAGVLAMTRTLAVE 168

Query: 215 FGGDIGITI--VTPGLIESEITGG 236
           +G   GI +  + PG IE   TGG
Sbjct: 169 WGRKYGIRVNAIAPGPIER--TGG 190

Length = 252

>gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs

 Score = 94.5 bits (235), Expect = 5e-23
 Identities = 70/203 (34%), Positives = 92/203 (45%), Gaps = 9/203 (4%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA--LAIPAD 105
           KVVLITG  SG+G   A   A+  A+L LV   E  L E A  A L  +P A  L I AD
Sbjct: 4   KVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGL-EAAKAALLEIAPDAEVLLIKAD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT-DITKPAPAMDINFWGSAY 163
           VS     + +VD T+E FGR+D    NAG+     L ED+  D       + IN  G  Y
Sbjct: 63  VSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFD--KVVSINLRGVFY 120

Query: 164 GTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           G    +  ++ Q  G I+  AS  G       S Y A+K   + L     VE+G   I I
Sbjct: 121 GLEKVLKVMREQGSGMIVNTASVGGIRGVGNQSGYAAAKHGVVGLTRNSAVEYGQYGIRI 180

Query: 222 TIVTPGLIESEITGGKFLNKNGK 244
             + PG I + +  G       +
Sbjct: 181 NAIAPGAILTPMVEGSLKQLGPE 203

Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs

 Score = 93.9 bits (234), Expect = 7e-23
 Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 7/190 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPA 104
           AGKV L+TGAS GIG+ +A   AR  A +V+  A  +    EV  + E  G   A+A+ A
Sbjct: 2   AGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGK-AIAVQA 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DVS         D   + FG +D LV NAGV+      + ++         +N  G+ + 
Sbjct: 61  DVSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAETSEEEFDR-MFTVNTKGAFFV 119

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI- 223
              A   L+   G+II ++S+      P    Y  SKAA  A    L  E GG  GIT+ 
Sbjct: 120 LQEAAKRLRDG-GRIINISSSLTAAYTPNYGAYAGSKAAVEAFTRVLAKELGGR-GITVN 177

Query: 224 -VTPGLIESE 232
            V PG ++++
Sbjct: 178 AVAPGPVDTD 187

1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243

>gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional

 Score = 93.9 bits (233), Expect = 9e-23
 Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 29/248 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE-VADQAELMGSPFALAIPAD 105
           GKV ++TG + GIGK +    A+  A++V+     ++  E + ++    G     A+ AD
Sbjct: 6   GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHD-VYAVQAD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           VSKVED    V+  + HFG++D LV NAG+     F     ED+  +      +D+N   
Sbjct: 65  VSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERV------IDVNLSS 118

Query: 161 SAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-D 218
               T   +PY+ + + G+II ++S  G       + Y+A+KA  +   ++L +E    +
Sbjct: 119 VFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKAGMLGFTKSLALELAKTN 178

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSA 275
           + +  + PG I++E+            EV +E+R   ++ +P +     +E AK +V   
Sbjct: 179 VTVNAICPGFIDTEMV----------AEVPEEVRQKIVAKIPKKRFGQADEIAKGVV-YL 227

Query: 276 CRGDRYLT 283
           CR   Y+T
Sbjct: 228 CRDGAYIT 235

Length = 247

>gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional

 Score = 93.8 bits (234), Expect = 1e-22
 Identities = 69/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K + ITGA+SGIG+  A  +A    R+      E  L  +A  AEL G+  A     DV+
Sbjct: 2   KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALA--AEL-GAGNAWTGALDVT 58

Query: 108 KVEDCKHFV-DVTMEHFGRLDHLVTNAGVVPMCLFED--YTDITKPAPAMDINFWGSAYG 164
                   + D      GRLD L  NAG++    FED       +    +DIN  G   G
Sbjct: 59  DRAAWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDR---VIDINVKGVLNG 115

Query: 165 TYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
            + A+PYLK T G  ++  +SA+     P ++ Y+A+K A   L E L +E+    I + 
Sbjct: 116 AHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVRGLTEALDLEWRRHGIRVA 175

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQE-IRDVQISLLPVQPTEECAKAIVNSACRGDR 280
            V P  +++ +            EVD    + + + L P    E+ A+A+  +     R
Sbjct: 176 DVMPLFVDTAML------DGTSNEVDAGSTKRLGVRLTP----EDVAEAVWAAVQHPTR 224

Length = 260

>gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 10/241 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV +ITG +SGIG+  A  +A+  AR+V+    +   + VA  AEL G P    +  DV
Sbjct: 4   GKVAIITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVA--AEL-GDPDISFVHCDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +   D +  VD  +  FGRLD +  NAGV+   C     T + +    +D+N +G+  GT
Sbjct: 61  TVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFLGT 120

Query: 166 YFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITI 223
             A   +    KG I+ VAS AG +       Y ASK A + L  +   E G   I +  
Sbjct: 121 KHAARVMIPAKKGSIVSVASVAGVVGGLGPHAYTASKHAVLGLTRSAATELGEHGIRVNC 180

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT-EECAKAIVNSACRGDRYL 282
           V+P  + + +    F  ++  +E   E      +L       E+ A A++  A    RY+
Sbjct: 181 VSPYGVATPLLTAGFGVEDEAIE---EAVRGAANLKGTALRPEDIAAAVLYLASDDSRYV 237

Query: 283 T 283
           +
Sbjct: 238 S 238

Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional

 Score = 93.2 bits (232), Expect = 3e-22
 Identities = 67/186 (36%), Positives = 92/186 (49%), Gaps = 13/186 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KV  ITGAS G G+        R  R+V  AR    L ++A++      P AL    DV
Sbjct: 3   EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLAL----DV 58

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-MDINFWGSAYGT 165
           +        V+  +EHFGRLD +V NAG     + E+ T+    A A +D NF+G+ + T
Sbjct: 59  TDRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTE--SEARAQIDTNFFGALWVT 116

Query: 166 YFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGI 221
              +PYL +Q  G II ++S  G    P    Y+ASK A   + E L  E   FG  I +
Sbjct: 117 QAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSEALAQEVAEFG--IKV 174

Query: 222 TIVTPG 227
           T+V PG
Sbjct: 175 TLVEPG 180

Length = 275

>gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12

 Score = 92.2 bits (229), Expect = 3e-22
 Identities = 71/231 (30%), Positives = 98/231 (42%), Gaps = 8/231 (3%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKV ++TGA +GIG   A   AR  AR V+VA  +      A       +  ALA+  
Sbjct: 1   LEGKVAIVTGAGAGIGAACAARLAREGAR-VVVADIDG---GAAQAVVAQIAGGALALRV 56

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+  +      +  +E FG LD LV NAG + +      TD+      M IN  G+   
Sbjct: 57  DVTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLC 116

Query: 165 TYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
              A P +    G  IV ++S AG    P    Y ASKAA   L  TL  E     I   
Sbjct: 117 CRHAAPRMIARGGGSIVNLSSIAGQSGDPGYGAYGASKAAIRNLTRTLAAELRHAGIRCN 176

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-VQPTEECAKAIV 272
            + PGLI++ +   K     G L        +   L   +   E+ A A+V
Sbjct: 177 ALAPGLIDTPLLLAKLAGFEGALGPGGF-HLLIHQLQGRLGRPEDVAAAVV 226

These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246

>gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 24/251 (9%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G+V LITG  SG+G+ L   +    A++ ++ R   ++ E+       G    + +  DV
Sbjct: 4   GEVALITGGGSGLGRALVERFVAEGAKVAVLDRSAEKVAELR---ADFGDA-VVGVEGDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----------MDI 156
             + D +  V   +E FG+LD  + NAG+       DY+      P             I
Sbjct: 60  RSLADNERAVARCVERFGKLDCFIGNAGIW------DYSTSLVDIPEEKLDEAFDELFHI 113

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           N  G   G   A+P L  T+G +I   S AG+ P      Y ASK A + L + L  E  
Sbjct: 114 NVKGYILGAKAALPALYATEGSVIFTVSNAGFYPGGGGPLYTASKHAVVGLVKQLAYELA 173

Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ--PT-EECAKAIVN 273
             I +  V PG + +++ G   L +         + D+  S+LP+   P  E+   A V 
Sbjct: 174 PHIRVNGVAPGGMVTDLRGPASLGQGETSISTPPLDDMLKSILPLGFAPEPEDYTGAYVF 233

Query: 274 SACRGD-RYLT 283
            A RGD R  T
Sbjct: 234 LASRGDNRPAT 244

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs

 Score = 92.1 bits (229), Expect = 4e-22
 Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 16/196 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF---ALAIP 103
            KV +ITGA+ GIG+ +A   A     +VL    +  L E A       S     A+A+ 
Sbjct: 2   SKVAIITGAAQGIGRAIAERLAADGFNIVLA---DLNLEEAAKSTIQEISEAGYNAVAVG 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGS 161
           ADV+  +D +  +D  +E FG  D +V NAG+ P+      T  D+ K      +N +G 
Sbjct: 59  ADVTDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKK---VYAVNVFGV 115

Query: 162 AYGTYFAIPYLK--QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
            +G   A    K     GKII  +S AG    P +  Y+ASK A   L +T   E     
Sbjct: 116 LFGIQAAARQFKKLGHGGKIINASSIAGVQGFPNLGAYSASKFAVRGLTQTAAQELAPK- 174

Query: 220 GITI--VTPGLIESEI 233
           GIT+    PG++++E+
Sbjct: 175 GITVNAYAPGIVKTEM 190

2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4

 Score = 91.4 bits (227), Expect = 5e-22
 Identities = 57/189 (30%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K  L+TGAS GIG+  A        R+ + AR E +L   A Q         L +  DV 
Sbjct: 1   KAALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAAAAQE----LEGVLGLAGDVR 56

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
              D +  VD   E FG LD LV NAGV  M   E+ T                      
Sbjct: 57  DEADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIHKA 116

Query: 168 AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGITIVTP 226
           A   L++  G I+ V S AG       + YNASK   + L E   ++    +I +  V P
Sbjct: 117 APALLRRGGGTIVNVGSLAGKNAFKGGAAYNASKFGLLGLSEAAMLDLREANIRVVNVMP 176

Query: 227 GLIESEITG 235
           G +++   G
Sbjct: 177 GSVDTGFAG 185

This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226

>gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs

 Score = 91.7 bits (228), Expect = 7e-22
 Identities = 67/232 (28%), Positives = 102/232 (43%), Gaps = 27/232 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARR--ERQLREVADQAELMGSPFALAIPA 104
           GKV L+TG++SGIG  +A   A   A +VL             A  A   G    L   A
Sbjct: 2   GKVALVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAAKHGVK-VLYHGA 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD----INFWG 160
           D+SK    +  V      FG +D LV NAG+  +   ED+     P    D    +N   
Sbjct: 61  DLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDF-----PTEKWDAIIALNLSA 115

Query: 161 SAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
             + T  A+P++K+   G+II +AS  G +     S Y A+K   + L + + +E     
Sbjct: 116 VFHTTRLALPHMKKQGWGRIINIASVHGLVASANKSAYVAAKHGVVGLTKVVALE-TAGT 174

Query: 220 GITI--VTPG-----LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
           G+T   + PG     L+E +I     L +   +  +Q  R++   LL  QP+
Sbjct: 175 GVTCNAICPGWVLTPLVEKQI---SALAQKNGVPQEQAAREL---LLEKQPS 220

DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 91.3 bits (227), Expect = 8e-22
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 29/210 (13%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR------------EVADQAEL 93
           +GKV  +TGAS GIG+ +A   A+  A +V+ A+   +              E A++ E 
Sbjct: 2   SGKVAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEA 61

Query: 94  MGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA 153
            G   AL I  DV   +  +  V+ T++ FGRLD LV NAG + + L ED        PA
Sbjct: 62  AGGQ-ALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVED-------TPA 113

Query: 154 ------MDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIA 206
                   +N  G+   +  A+P++ +  +G I+ ++      P      Y A KA    
Sbjct: 114 KRFDLMQRVNLRGTYLLSQAALPHMVKAGQGHILNISPPLSLRPARGDVAYAAGKAGMSR 173

Query: 207 LYETLRVEF-GGDIGITIVTPG-LIESEIT 234
           L   L  E     I +  + P   IE+   
Sbjct: 174 LTLGLAAELRRHGIAVNSLWPSTAIETPAA 203

This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 58/179 (32%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
           +D AGKV +ITGA+SG G   A   A    +LVL   ++  L     +    G+   L +
Sbjct: 2   KDFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAE-VLGV 60

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFW 159
             DVS     +   D  +E FG +  L  NAGV    L  + +     A     + +N W
Sbjct: 61  RTDVSDAAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENS----LADWEWVLGVNLW 116

Query: 160 GSAYGTYFAIPYL-------KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
           G  +G     P +          +G I+  AS AG L PP M  YN SK A ++L ETL
Sbjct: 117 GVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGIYNVSKHAVVSLTETL 175

Length = 287

>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional

 Score = 91.0 bits (226), Expect = 2e-21
 Identities = 65/188 (34%), Positives = 91/188 (48%), Gaps = 26/188 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GK +L+TGASSGIG+  A ++ARR A +V VARRE  L  VAD+    G   A+A+P
Sbjct: 37  DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGD-AMAVP 95

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP----------- 152
            D+S ++     V    +  G +D L+ NAG            I +P             
Sbjct: 96  CDLSDLDAVDALVADVEKRIGGVDILINNAG----------RSIRRPLAESLDRWHDVER 145

Query: 153 AMDINFWGSAYGTY-FAIPYLKQTKGKIIVVASAAGWLP--PPRMSFYNASKAAKIALYE 209
            M +N++         A   L++  G II VA+  G L    P  S YNASKAA  A+  
Sbjct: 146 TMVLNYYAPLRLIRGLAPGMLERGDGHIINVAT-WGVLSEASPLFSVYNASKAALSAVSR 204

Query: 210 TLRVEFGG 217
            +  E+G 
Sbjct: 205 VIETEWGD 212

Length = 293

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 25/224 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G  VLITG +SGIG  LA ++      +++  RRE +L E   + EL   P    I 
Sbjct: 2   KLTGNTVLITGGTSGIGLALARKFLEAGNTVIITGRREERLAEA--KKEL---PNIHTIV 56

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-------MDI 156
            DV   E  +   +  +  +  LD L+ NAG+          D+  PA         +D 
Sbjct: 57  LDVGDAESVEALAEALLSEYPNLDILINNAGI--QRPI----DLRDPASDLDKADTEIDT 110

Query: 157 NFWGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G        +P+LK Q +  I+ V+S   ++P      Y A+KAA  +    LR + 
Sbjct: 111 NLIGPIRLIKAFLPHLKKQPEATIVNVSSGLAFVPMAANPVYCATKAALHSYTLALRHQL 170

Query: 216 GGDIGITIV--TPGLIESEITGG---KFLNKNGKLEVDQEIRDV 254
             D G+ +V   P  +++E+             K+ +D+ + +V
Sbjct: 171 -KDTGVEVVEIVPPAVDTELHEERRNPDGGTPRKMPLDEFVDEV 213

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 31/185 (16%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVL----VARRERQLREVADQAELMGSPFALA 101
            GKV ++TGA SG G+ +A  +A+  AR+V+        ER   ++ + A        +A
Sbjct: 4   EGKVAIVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADIGEAA--------IA 55

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD------ 155
           I ADV+K  D +  V+  +  FGRLD LV NAG          T   KP   +D      
Sbjct: 56  IQADVTKRADVEAMVEAALSKFGRLDILVNNAG---------ITHRNKPMLEVDEEEFDR 106

Query: 156 ---INFWGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
              +N           +P+++ Q  G II +AS AG  P P +++YNASK   +   + +
Sbjct: 107 VFAVNVKSIYLSAQALVPHMEEQGGGVIINIASTAGLRPRPGLTWYNASKGWVVTATKAM 166

Query: 212 RVEFG 216
            VE  
Sbjct: 167 AVELA 171

This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248

>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 18/235 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G+V L+TGAS GIG  +A    +   ++V  ARR  ++  +A + +  G P       D+
Sbjct: 6   GRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAGYPTLFPYQCDL 65

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           S  E               +D  + NAG+  P  L    T+  K     D+N    +  T
Sbjct: 66  SNEEQILSMFSAIRTQHQGVDVCINNAGLARPEPLLSGKTEGWK--EMFDVNVLALSICT 123

Query: 166 YFAIPYLKQTK---GKIIVVASAAG--WLPPPRMSFYNASKAAKIALYETLRVEF---GG 217
             A   +K+     G II + S +G    P     FY A+K A  AL E LR E      
Sbjct: 124 REAYQSMKERNVDDGHIININSMSGHRVPPVSVFHFYAATKHAVTALTEGLRQELREAKT 183

Query: 218 DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
            I  T ++PGL+E+E     F  K    + D E        +P    E+ A A++
Sbjct: 184 HIRATSISPGLVETE-----FAFK--LHDNDPEKAAATYESIPCLKPEDVANAVL 231

Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR

 Score = 89.5 bits (222), Expect = 4e-21
 Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 18/246 (7%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL-REVAD-QAELMGSPFALAI 102
           +A KV L+T ++ GIG  +A   A+  A +V+ +R+++ + R VA  Q E +        
Sbjct: 8   LANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGEGLS---VTGT 64

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWG 160
              V K ED +  V   +   G +D LV+NA V P   F +  D T+      +D+N   
Sbjct: 65  VCHVGKAEDRERLVATAVNLHGGVDILVSNAAVNP--FFGNILDSTEEVWDKILDVNVKA 122

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-D 218
           +A  T   +P + K+  G +++V+S A + P P +  YN SK A + L + L  E    +
Sbjct: 123 TALMTKAVVPEMEKRGGGSVVIVSSVAAFHPFPGLGPYNVSKTALLGLTKNLAPELAPRN 182

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG 278
           I +  + PGLI++  +   +++K  +  + + +R  ++     QP E+CA  IV+  C  
Sbjct: 183 IRVNCLAPGLIKTSFSSALWMDKAVEESMKETLRIRRLG----QP-EDCA-GIVSFLCSE 236

Query: 279 D-RYLT 283
           D  Y+T
Sbjct: 237 DASYIT 242

This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs

 Score = 89.0 bits (221), Expect = 5e-21
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  L+TG + GIG  +  E A   A +   AR +++L E   +    G         D
Sbjct: 5   EGKTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWREKGF-KVEGSVCD 63

Query: 106 VSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVV---PMCLF--EDYTDITKPAPAMDINFW 159
           VS   + +  +D    HF G+L+ LV NAG         +  EDY+ I      M  NF 
Sbjct: 64  VSSRSERQELMDTVASHFGGKLNILVNNAGTNIRKEAKDYTEEDYSLI------MSTNFE 117

Query: 160 GSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
            + + +  A P LK +  G I+ ++S AG +  P  + Y A+K A   L  +L  E+  D
Sbjct: 118 AAYHLSRLAHPLLKASGNGNIVFISSVAGVIAVPSGAPYGATKGALNQLTRSLACEWAKD 177

Query: 219 -IGITIVTPGLIESEITGGKFLNK 241
            I +  V P +I + +       K
Sbjct: 178 NIRVNAVAPWVIATPLVEPVIQQK 201

This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251

>gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs

 Score = 88.6 bits (220), Expect = 7e-21
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 8/201 (3%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSK 108
            L+TG S GIGK +A   A R A +V+  R+ +    EVA + E +G   A+ + ADVS+
Sbjct: 1   ALVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEIEELGGK-AVVVRADVSQ 59

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFA 168
            +D +       E FGRLD LV+NA         + T        M+ N     +    A
Sbjct: 60  PQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTP-AHWDAKMNTNLKALVHCAQQA 118

Query: 169 IPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI--VT 225
              + ++  G+I+ ++S       P       +KAA  AL   L VE G   GI +  V+
Sbjct: 119 AKLMRERGGGRIVAISSLGSIRALPNYLAVGTAKAALEALVRYLAVELGPR-GIRVNAVS 177

Query: 226 PGLIESEITGGKFLNKNGKLE 246
           PG+I+++     F N+   LE
Sbjct: 178 PGVIDTDAL-AHFPNREDLLE 197

This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

 Score = 88.9 bits (221), Expect = 7e-21
 Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 29/254 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA-- 104
           G+V LITG  SGIG+ L   +    AR   VA  ER     A++   +   F   +    
Sbjct: 6   GQVALITGGGSGIGRALVERFLAEGAR---VAVLERS----AEKLASLRQRFGDHVLVVE 58

Query: 105 -DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA---------M 154
            DV+   D +  VD T++ FG+LD  V NAG+     ++  T +                
Sbjct: 59  GDVTSYADNQRAVDQTVDAFGKLDCFVGNAGI-----WDYNTSLVDIPAETLDTAFDEIF 113

Query: 155 DINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           ++N  G   G   A+P LK + G +I   S + + P      Y ASK A + L   L  E
Sbjct: 114 NVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGGPLYTASKHAVVGLVRQLAYE 173

Query: 215 FGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI-SLLPVQ---PTEECAKA 270
               I +  V PG   +++ G   L +      D       I ++ P+Q     E+    
Sbjct: 174 LAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDHTGP 233

Query: 271 IVNSACRGD-RYLT 283
            V  A R + R LT
Sbjct: 234 YVLLASRRNSRALT 247

Length = 263

>gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional

 Score = 88.6 bits (220), Expect = 8e-21
 Identities = 63/200 (31%), Positives = 92/200 (46%), Gaps = 23/200 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-----AELMGSPFAL 100
             + VLITG S G+G+ +A   A   A ++++     + R  AD          G   AL
Sbjct: 5   DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGK--AL 62

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMD 155
            +  DV      +  +D  +E FGRLD LV NAG+     F     E++ D+      +D
Sbjct: 63  GLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDV------ID 116

Query: 156 INFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           +N  G    T  A+P + + +  G+I+ +AS AG         Y ASKA  I L +TL  
Sbjct: 117 VNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASKAGLIGLTKTLAN 176

Query: 214 EFGGDIGITI--VTPGLIES 231
           E     GIT+  V PG I +
Sbjct: 177 EL-APRGITVNAVAPGAINT 195

Length = 249

>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs

 Score = 88.6 bits (220), Expect = 9e-21
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 6/194 (3%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV L+TGAS GIG  +A   A   A +V+ +R E +  E     E  G     A  
Sbjct: 2   SLKGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKEGVEA-TAFT 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS  E  K  V+   E FG++D LV NAG++     E++ +  +    +D+N  G  +
Sbjct: 61  CDVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPE-AEWRDVIDVNLNGVFF 119

Query: 164 GTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
            +     + +KQ  GKII + S    L  P +  Y ASK     L + L  E+    GI 
Sbjct: 120 VSQAVARHMIKQGHGKIINICSLLSELGGPPVPAYAASKGGVAGLTKALATEWARH-GIQ 178

Query: 223 I--VTPGLIESEIT 234
           +  + PG   +E+T
Sbjct: 179 VNAIAPGYFATEMT 192

Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +VVL+TGA+ GIG+     +AR   ++V+  R   + RE AD    +G     A+  DV
Sbjct: 5   SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADS---LGPDH-HALAMDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           S     +   +     FGR+D LV NAGV  P       T + + A    IN  G+    
Sbjct: 61  SDEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVA 120

Query: 166 YFAIPY-LKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
             A+   ++Q  G  IV VAS AG +  P+ + Y+ASKAA I+L  +L  E+    I + 
Sbjct: 121 REALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVISLTRSLACEWAAKGIRVN 180

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
            V PG + +++     L + GKL+        +I L  +   EE A+A+   A     Y+
Sbjct: 181 AVLPGYVRTQMVAE--LERAGKLDPSAVRS--RIPLGRLGRPEEIAEAVFFLASDQASYI 236

Query: 283 T 283
           T
Sbjct: 237 T 237

Length = 520

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 9/188 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ--LREVADQAELMGSPFALAIPA 104
           GK  LITG  SGIG+ +A  +AR  A + +    E +    E     E  G    L IP 
Sbjct: 26  GKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEEDDAEETKKLIEEEGRK-CLLIPG 84

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSA 162
           D+     C+  V   ++ FG+LD LV NA        E   DIT          N +   
Sbjct: 85  DLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQ--ESIEDITTEQLEKTFRTNIFSMF 142

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           Y T  A+P+LK+    II   S   +   P +  Y A+K A +A    L ++     I +
Sbjct: 143 YLTKAALPHLKK-GSSIINTTSVTAYKGSPHLLDYAATKGAIVAFTRGLSLQLAEKGIRV 201

Query: 222 TIVTPGLI 229
             V PG I
Sbjct: 202 NAVAPGPI 209

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional

 Score = 88.3 bits (219), Expect = 1e-20
 Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK  LITGA  GIG+ +A  +AR  A L+L+     ++ ++AD+    G     A+ ADV
Sbjct: 6   GKTALITGALQGIGEGIARVFARHGANLILLDISP-EIEKLADELCGRGHR-CTAVVADV 63

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
                    +    E  GR+D LV NAGV  +  F D +D  +    +DIN  G    T 
Sbjct: 64  RDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDF-HIDINIKGVWNVTK 122

Query: 167 FAIPY-LKQTKGKIIVVASAAGWL-PPPRMSFYNASKAAKIALYETLRVEFGGDIGITI- 223
             +P  + +  G+I++++S  G +   P  + Y  +KAA + L ++L VE+    GI + 
Sbjct: 123 AVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEY-AQSGIRVN 181

Query: 224 -VTPGLI 229
            + PG +
Sbjct: 182 AICPGYV 188

Length = 263

>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional

 Score = 88.0 bits (219), Expect = 2e-20
 Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 13/186 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K  LITG SSG G+ LA        R+V   R E    +            ALA   DV
Sbjct: 4   MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP----DRALARLLDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-DINFWGSAYGT 165
           +  +     V      FG +D LV NAG       E+            ++N +G+   T
Sbjct: 60  TDFDAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLA--EMRRQFEVNVFGAVAMT 117

Query: 166 YFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGI 221
              +P +  + +G I+ + S  G +  P + +Y  SK A   + E+L  E   FG  I +
Sbjct: 118 KAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISESLAKEVAPFG--IHV 175

Query: 222 TIVTPG 227
           T V PG
Sbjct: 176 TAVEPG 181

Length = 277

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 59/178 (33%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGKV L+TGA+ GIGK  A   A   A +VL    E      A  AEL G   AL +  D
Sbjct: 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAA--AELGGPDRALGVACD 478

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+     +   +     FG +D +V+NAG+      E+ T       + D+N  G     
Sbjct: 479 VTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEE-TSDEDWRRSFDVNATGHFLVA 537

Query: 166 YFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             A+  +K     G I+ +AS     P P    Y A+KAA++ L   L +E G D GI
Sbjct: 538 REAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAKAAELHLVRQLALELGPD-GI 594

Length = 681

>gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 77/237 (32%), Positives = 106/237 (44%), Gaps = 26/237 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  LITG +SGIG   A ++    AR+ +  R    L     +AEL  S  AL I AD
Sbjct: 5   QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAA--RAELGES--ALVIRAD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
              V   K       E FGRLD +  NAGV      ED+ +      + + N      G 
Sbjct: 61  AGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDR-SFNTNV----KGP 115

Query: 166 YFAI----PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIG 220
           YF I    P L      I++  S    +  P  S Y ASKAA ++L +TL  E     I 
Sbjct: 116 YFLIQALLPLL-ANPASIVLNGSINAHIGMPNSSVYAASKAALLSLAKTLSGELLPRGIR 174

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI-SLLPV----QPTEECAKAIV 272
           +  V+PG +++ + G     K G  E   +    QI +L+P+     P EE AKA++
Sbjct: 175 VNAVSPGPVQTPLYG-----KLGLPEATLDAVAAQIQALVPLGRFGTP-EEIAKAVL 225

Length = 249

>gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 8/194 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIPA 104
           AGKV L+TGA+ GIG  +A  +AR  A + L           A       +    LA+PA
Sbjct: 6   AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPA 65

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP--APAMDINFWGSA 162
           DV+        V    E FG LD LV NAG+    +F D   +T         ++  G+ 
Sbjct: 66  DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI---NVFADPLAMTDEDWRRCFAVDLDGAW 122

Query: 163 YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
            G    +P  +++ +G I+ +AS   +   P    Y  +K   + L   L +E+   ++ 
Sbjct: 123 NGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHGLLGLTRALGIEYAARNVR 182

Query: 221 ITIVTPGLIESEIT 234
           +  + PG IE+++T
Sbjct: 183 VNAIAPGYIETQLT 196

Length = 260

>gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

 Score = 86.0 bits (213), Expect = 1e-19
 Identities = 71/248 (28%), Positives = 112/248 (45%), Gaps = 27/248 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G+VVL+TG +SG+G+ +   +    AR+ ++ +    L+E+    E       + +  DV
Sbjct: 5   GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL----EAAHGDAVVGVEGDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMD------- 155
             ++D K  V   +  FG++D L+ NAG+       DY+    DI  P   +D       
Sbjct: 61  RSLDDHKEAVARCVAAFGKIDCLIPNAGIW------DYSTALVDI--PDDRIDEAFDEVF 112

Query: 156 -INFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            IN  G       A+P L  ++G +I   S AG+ P      Y A+K A + L + L  E
Sbjct: 113 HINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGGPLYTAAKHAVVGLVKELAFE 172

Query: 215 FGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKAI 271
               + +  V PG + S++ G K L    K      + D+  S+LP+      EE   A 
Sbjct: 173 LAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAY 232

Query: 272 VNSACRGD 279
           V  A RGD
Sbjct: 233 VFFATRGD 240

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. Length = 262

>gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9

 Score = 84.8 bits (210), Expect = 1e-19
 Identities = 73/228 (32%), Positives = 100/228 (43%), Gaps = 20/228 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K + ITGA+SGIG+  A  +AR    + L    E  L  +A  AEL G+   +A   DV+
Sbjct: 1   KAIFITGAASGIGRETALLFARNGWFVGLYDIDEDGLAALA--AEL-GAENVVAGALDVT 57

Query: 108 KVEDCKH-FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-DINFWGSAYGT 165
                     D      GRLD L  NAGV     FED          M DIN  G   G 
Sbjct: 58  DRAAWAAALADFAAATGGRLDALFNNAGVGRGGPFEDVPL--AAHDRMVDINVKGVLNGA 115

Query: 166 YFAIPYLKQTKG-KIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITI 223
           Y A+PYLK T G ++I  AS++     P ++ Y+A+K A   L E L VE+    I +  
Sbjct: 116 YAALPYLKATPGARVINTASSSAIYGQPDLAVYSATKFAVRGLTEALDVEWARHGIRVAD 175

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAI 271
           V P  +++ I           L   +     +  L  V P  + AK +
Sbjct: 176 VWPWFVDTPI-----------LTKGETGAAPKKGLGRVLPVSDVAKVV 212

This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227

>gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

 Score = 84.6 bits (210), Expect = 2e-19
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 30/204 (14%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G   ++TGA+ GIGK  A E A+R   ++L++R + +L  VA + E         I AD 
Sbjct: 1   GTWAVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKYGVETKTIAADF 60

Query: 107 S-KVEDCKHF------VDVTMEHFGRLDHLVTNAGV---VPMCLFE----DYTDITKPAP 152
           S   +  +        +D+ +        LV N G+   +P    E    +  DI     
Sbjct: 61  SAGDDIYERIEKELEGLDIGI--------LVNNVGISHSIPEYFLETPEDELQDIIN--- 109

Query: 153 AMDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
              +N   +   T   +P  +K+ KG I+ ++S AG +P P ++ Y+ASKA        L
Sbjct: 110 ---VNVMATLKMTRLILPGMVKRKKGAIVNISSFAGLIPTPLLATYSASKAFLDFFSRAL 166

Query: 212 RVEFGGD-IGITIVTPGLIESEIT 234
             E+    I +  + P L+ ++++
Sbjct: 167 YEEYKSQGIDVQSLLPYLVATKMS 190

This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239

>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated

 Score = 84.6 bits (210), Expect = 3e-19
 Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 20/192 (10%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARL---VLVARRERQLREVADQAELMGSPFALAIPA 104
           KV L+TGASSGIG       ARR A     V  A   R++ ++ D A L   P +L    
Sbjct: 4   KVALVTGASSGIG----KATARRLAAQGYTVYGA--ARRVDKMEDLASLGVHPLSL---- 53

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+     K  VD  +   GR+D LV NAG       ED   I +     ++N +G+A  
Sbjct: 54  DVTDEASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVP-IDEARRQFEVNLFGAARL 112

Query: 165 TYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIG 220
           T   +P++  Q  G+II ++S  G +  P  ++Y+A+K A     + LR+E   FG  I 
Sbjct: 113 TQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEGFSDALRLEVAPFG--ID 170

Query: 221 ITIVTPGLIESE 232
           + ++ PG I++E
Sbjct: 171 VVVIEPGGIKTE 182

Length = 273

>gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 62/199 (31%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE-VADQAELMGSPFALA 101
                KV ++TGA+ GIG+  A   AR  A  V+VA    +  E VA Q    G   A+A
Sbjct: 2   GRFDDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGAERVAKQIVADGGT-AIA 59

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA----GVVPMCLFEDYTDITKPAPAMDIN 157
           +  DVS  +  K   D T+  FG +D+LV NA    G+    L             M +N
Sbjct: 60  VQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLIT--VPWDYYKKFMSVN 117

Query: 158 FWGSAYGTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G+   T     ++ +  G  IV  +S A WL     +FY  +K     L + L  E G
Sbjct: 118 LDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLYS---NFYGLAKVGLNGLTQQLARELG 174

Query: 217 G-DIGITIVTPGLIESEIT 234
           G +I +  + PG I++E T
Sbjct: 175 GMNIRVNAIAPGPIDTEAT 193

Length = 250

>gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 13/231 (5%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           VL+TGA+ GIG  +A   A   AR+  V R   QL E+       G PFA     DV+  
Sbjct: 1   VLVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLRRYGYPFA-TYKLDVADS 59

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYGTYF 167
                 V      +G +D LV  AG++ +   +  +  D         +N +G    +  
Sbjct: 60  AAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQA---TFAVNTFGVFNVSQA 116

Query: 168 AIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI--TIV 224
             P +K+ + G I+ V S A  +P   M+ Y ASKAA   L + L +E     GI   +V
Sbjct: 117 VSPRMKRRRSGAIVTVGSNAANVPRMGMAAYAASKAALTMLTKCLGLELAPY-GIRCNVV 175

Query: 225 TPGLIESEITGGKFLNKNGKLEV---DQEIRDVQISLLPVQPTEECAKAIV 272
           +PG  ++E+    + ++ G+ +V     E   + I L  +    + A A++
Sbjct: 176 SPGSTDTEMQRQLWNDEYGEQQVIAGSPEQFRLGIPLGKIAEPSDIANAVL 226

Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250

>gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 9/235 (3%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV L+TG +SGIG  +A   A   A +V+         +VA+ A+  G P AL +  DV
Sbjct: 1   GKVALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAEKVAEAAQ--GGPRALGVQCDV 58

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +     +   +  +  FG LD +V+NAG+       + +       +MDIN  G    + 
Sbjct: 59  TSEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNR-SMDINLTGHFLVSR 117

Query: 167 FAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
            A   +K     G I+  AS     P P  + Y+A+KAA+  L   L +E G D I +  
Sbjct: 118 EAFRIMKSQGIGGNIVFNASKNAVAPGPNAAAYSAAKAAEAHLARCLALEGGEDGIRVNT 177

Query: 224 VTPGLI--ESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT-EECAKAIVNSA 275
           V P  +   S+I  G +     K     E      +LL  +   E+ A+A+V  A
Sbjct: 178 VNPDAVFRGSKIWEGVWRAARAKAYGLLEEEYRTRNLLKREVLPEDVAEAVVAMA 232

This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional

 Score = 83.9 bits (208), Expect = 5e-19
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 4/191 (2%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K   +TGA+SGIG+  A   A + A L L  R    L +    A  +G         D+S
Sbjct: 1   KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT-Y 166
             +    F        G +D ++  AG+      +  T   +    +D+N  G  +    
Sbjct: 61  DYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHE-QWRRMVDVNLMGPIHVIET 119

Query: 167 FAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITIV 224
           F  P +   +G  +V V+SAAG +  P  + Y+ASK     L E LR +     IG+++V
Sbjct: 120 FVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVV 179

Query: 225 TPGLIESEITG 235
            PG +++ +  
Sbjct: 180 VPGAVKTPLVN 190

Length = 272

>gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs

 Score = 83.4 bits (206), Expect = 5e-19
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           +  +++L+TGAS GIG+  A  YAR  A ++L+ R E +LR+VAD     G         
Sbjct: 2   LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEEGGRQPQWFIL 61

Query: 105 DV--SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV----PMCLF--EDYTDITKPAPAMDI 156
           D+     E+C+        ++ RLD ++ NAG++    P+     + + D+        +
Sbjct: 62  DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDV------XQV 115

Query: 157 NFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N   +   T   +P L ++  G ++  +S+ G         Y  SK A   L + L  E+
Sbjct: 116 NVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAVSKFATEGLXQVLADEY 175

Query: 216 GG-DIGITIVTPG 227
              ++ +  + PG
Sbjct: 176 QQRNLRVNCINPG 188

Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236

>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
           +GKV L+TG+S GIGK +A   A     + +  AR  +   E A++ E +G   ALA+ A
Sbjct: 3   SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRK-ALAVKA 61

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNA--GVV--PMCLFEDYTDITKPAPAMDINFWG 160
           +V  VE  K       E FGRLD  V NA  GV+   M L E + D T     M+IN   
Sbjct: 62  NVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWT-----MNINAKA 116

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
             +    A   + K   GKII ++S          +    SKAA  AL   L VE     
Sbjct: 117 LLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKAALEALTRYLAVELAPKG 176

Query: 219 IGITIVTPGLIESE 232
           I +  V+ G ++++
Sbjct: 177 IAVNAVSGGAVDTD 190

Length = 250

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 82.6 bits (205), Expect = 1e-18
 Identities = 63/213 (29%), Positives = 91/213 (42%), Gaps = 15/213 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GKVVL+TGA+ GIG+    +   R A  V  A R+     V D       P  + + 
Sbjct: 3   DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD--PESVTDLG-----PRVVPLQ 55

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS-A 162
            DV+        V    E    +  LV NAG+          D       M+ N++G  A
Sbjct: 56  LDVTDPAS----VAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLA 111

Query: 163 YGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
               FA P L     G I+ V S   W+  P +  Y+ASKAA  +L + LR E       
Sbjct: 112 MARAFA-PVLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALRAELAPQGTR 170

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD 253
           +  V PG I++++  G    K    +V ++I D
Sbjct: 171 VLGVHPGPIDTDMAAGLDAPKASPADVARQILD 203

Length = 238

>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIPA 104
            G+  LITGAS GIG  +A E+    A +++VAR    L +  D+ AE         + A
Sbjct: 8   DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA---------PAMD 155
           DVS  ED +  +D   +H+  L  LV NAG           +I K A            +
Sbjct: 68  DVSDDEDRRAILDWVEDHWDGLHILVNNAG----------GNIRKAAIDYTEDEWRGIFE 117

Query: 156 INFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            N + +   + +A P LKQ     I+ + S +G       + Y  +KAA + +   L VE
Sbjct: 118 TNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTKAALLQMTRNLAVE 177

Query: 215 FGGD-IGITIVTPGLIESEITGG 236
           +  D I +  V P  I + +T G
Sbjct: 178 WAEDGIRVNAVAPWYIRTPLTSG 200

Length = 257

>gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 21/190 (11%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
              LITGAS GIG  +A E A     L+L  R   +L E+A +      P A   P D++
Sbjct: 4   PTALITGASRGIGAAIARELAPTH-TLLLGGRPAERLDELAAEL-----PGATPFPVDLT 57

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDINFWGSA 162
             E     +   +E  GRLD LV NAGV       D   + +         +++N    A
Sbjct: 58  DPEA----IAAAVEQLGRLDVLVHNAGVA------DLGPVAESTVDEWRATLEVNVVAPA 107

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
             T   +P L+   G ++ + S AG    P    Y ASK A  AL + LR E  G++ +T
Sbjct: 108 ELTRLLLPALRAAHGHVVFINSGAGLRANPGWGSYAASKFALRALADALREEEPGNVRVT 167

Query: 223 IVTPGLIESE 232
            V PG  +++
Sbjct: 168 SVHPGRTDTD 177

Length = 227

>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TG + GIGK +A   A+    + +    E   +E A +    G   A+A   DVS
Sbjct: 1   KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGK-AVAYKLDVS 59

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYGT 165
             +     +D   E FG  D +V NAGV P+    + T  ++ K     ++N  G  +G 
Sbjct: 60  DKDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKK---VYNVNVKGVLFGI 116

Query: 166 YFAIPYLK--QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
             A    K     GKII  AS AG    P +S Y+++K A   L +T   E     GIT+
Sbjct: 117 QAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGLTQTAAQELAPK-GITV 175

Query: 224 --VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-QPTEECAKAI 271
               PG++++ +            E+D+E    +I+  P+ +  EE +  I
Sbjct: 176 NAYCPGIVKTPMWE----------EIDEET--SEIAGKPIGEGFEEFSSEI 214

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254

>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GK+ L+TGAS GIG+ +A   A++ A +++ +R+    + VAD     G   A A+ 
Sbjct: 5   DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGK-AEALA 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSA 162
             + ++E          E  GRLD LV NA   P      D TD+      +D+N  G  
Sbjct: 64  CHIGEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILD-TDLGAFQKTVDVNIRGYF 122

Query: 163 YGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +  A   +K Q  G I+ VAS  G  P      Y+ +KAA I++ +    E     I 
Sbjct: 123 FMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSITKAAVISMTKAFAKECAPFGIR 182

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTE 265
           +  + PGL +++     F N          I    ++ +P+    +P+E
Sbjct: 183 VNALLPGLTDTKFASALFKND--------AILKQALAHIPLRRHAEPSE 223

Length = 252

>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional

 Score = 81.6 bits (201), Expect = 3e-18
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 7/195 (3%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GK  LITGAS+GIGK +A  Y    A++ + AR    L ++AD+    G    + + 
Sbjct: 6   DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGK-VVPVC 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS+ +     +D      G +D  V NAG++ +    D   + +     + N  G   
Sbjct: 65  CDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMP-LEEFQRLQNTNVTGVFL 123

Query: 164 GTYFAIPYL--KQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVEFG-GD 218
               A   +  +   G II  AS +G +   P ++S Y ASKAA I L + + VE     
Sbjct: 124 TAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHK 183

Query: 219 IGITIVTPGLIESEI 233
           I +  V+PG I +E+
Sbjct: 184 IRVNSVSPGYILTEL 198

Length = 253

>gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 25/195 (12%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA- 104
             K+ ++TGASSG G     E A++   ++   R   +   +  QA  +     + +   
Sbjct: 2   NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQL 61

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV--------VPMCLFEDYTDITKPAPAMDI 156
           DV+      +F  V  E  GR+D LV NAG         +P+   E+Y          + 
Sbjct: 62  DVTDQNSIHNFQLVLKEI-GRIDLLVNNAGYANGGFVEEIPV---EEYRK------QFET 111

Query: 157 NFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE- 214
           N +G+   T   +PY+++ K GKII ++S +G +  P +S Y +SK A     E+LR+E 
Sbjct: 112 NVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYALEGFSESLRLEL 171

Query: 215 --FGGDIGITIVTPG 227
             FG  I + ++ PG
Sbjct: 172 KPFG--IDVALIEPG 184

Length = 280

>gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs

 Score = 80.4 bits (199), Expect = 7e-18
 Identities = 55/246 (22%), Positives = 90/246 (36%), Gaps = 33/246 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADV 106
            V L+TGA+  IG+ +A   A    R+V+   R     + + D+   + +  A+ + AD+
Sbjct: 1   AVALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQRLKDELNALRNS-AVLVQADL 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-----MCLFEDYTDITKPAPAMDINFWGS 161
           S    C   V      FGR D LV NA             + + ++        IN    
Sbjct: 60  SDFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAEL------FGINLKAP 113

Query: 162 AYGTYFAIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
                     L     G II +  A    P      Y  SKAA   L  +  +E   +I 
Sbjct: 114 YLLIQAFARRLAGSRNGSIINIIDAMTDRPLTGYFAYCMSKAALEGLTRSAALELAPNIR 173

Query: 221 ITIVTPGLI-ESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD 279
           +  + PGLI   E             ++D E R+  +  +P++     A+ I ++     
Sbjct: 174 VNGIAPGLILLPE-------------DMDAEYRENALRKVPLK-RRPSAEEIADAV---- 215

Query: 280 RYLTQP 285
            +L   
Sbjct: 216 IFLLDS 221

Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234

>gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional

 Score = 80.6 bits (199), Expect = 8e-18
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           +  +V ++TGA  G+G  +A  +A   A +++ AR E QL EVA+Q    G   A  + A
Sbjct: 8   LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRR-AHVVAA 66

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           D++  E         +E FGRLD +V N  G +P  L    T     A   ++    +A+
Sbjct: 67  DLAHPEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNV---ATAH 123

Query: 164 G-TYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAA 203
             T  A+P + +    G +I ++S  G L     + Y  +KAA
Sbjct: 124 ALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKAA 166

Length = 263

>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 16/218 (7%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
             +  KV +ITG +  +G  +A   A+  A++  + R + +  +VA +   +G   A+A+
Sbjct: 1   FSLKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKEITALGGR-AIAL 59

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG-----------VVPMCLFEDYTDITKPA 151
            ADV      +   +  +  FG +D L+  AG                  +++ D+ +  
Sbjct: 60  AADVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEG 119

Query: 152 --PAMDINFWGSAYGT-YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
                D+N  GS   +  F    L+Q  G II ++S   + P  ++  Y+A+KAA     
Sbjct: 120 WEFVFDLNLNGSFLPSQVFGKDMLEQKGGSIINISSMNAFSPLTKVPAYSAAKAAVSNFT 179

Query: 209 ETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL 245
           + L VEF    + +  + PG   +       +N +G  
Sbjct: 180 QWLAVEFATTGVRVNAIAPGFFVTPQNRKLLINPDGSY 217

D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 19/169 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV L+TGA+SGIG+ +A  Y    AR+V+   +       A  A L   P A+A+  DV
Sbjct: 6   GKVALLTGAASGIGEAVAERYLAEGARVVIADIKP----ARARLAALEIGPAAIAVSLDV 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP--APAMDINFWGSAYG 164
           ++ +     V   +E FG +D L  NA +  M       DI++        +N      G
Sbjct: 62  TRQDSIDRIVAAAVERFGGIDILFNNAALFDM---APILDISRDSYDRLFAVN----VKG 114

Query: 165 TYF-----AIPYLKQTKG-KIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
            +F     A   ++Q +G KII +AS AG      +S Y A+KAA I+ 
Sbjct: 115 LFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAAVISY 163

Length = 257

>gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 34/220 (15%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI---PA 104
           + +LITGASSG+G  +A E+A +   L L ARR  +L E+  +AEL+     + +     
Sbjct: 3   QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEEL--KAELLARYPGIKVAVAAL 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP-----------A 153
           DV+  +          +  G LD ++ NAG            I K A             
Sbjct: 61  DVNDHDQVFEVFAEFRDELGGLDRVIVNAG------------IGKGARLGTGKFWANKAT 108

Query: 154 MDINFWGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPR-MSFYNASKAAKIALYETL 211
            + NF  +      A+   + Q  G +++++S +     P   + Y ASKA   +L E L
Sbjct: 109 AETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGVASLGEGL 168

Query: 212 RVEF-GGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE 250
           R E     I ++ + PG I SE+       K+    VD E
Sbjct: 169 RAELAKTPIKVSTIEPGYIRSEMNAKA---KSTPFMVDTE 205

Length = 248

>gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 7/192 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIPA 104
            G+  +ITG +SGIG     E+ARR AR+VL    +  LR+  +   L    F    +  
Sbjct: 5   PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNH--LRAEGFDVHGVMC 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV   E+  H  D      G +D + +NAG+V      + T        +D++ WGS + 
Sbjct: 63  DVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTH-DDWRWVIDVDLWGSIHT 121

Query: 165 TYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
               +P L  + T G ++  AS AG +P   +  Y  +K   + L ETL  E   D IG+
Sbjct: 122 VEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGV 181

Query: 222 TIVTPGLIESEI 233
           +++ P ++E+ +
Sbjct: 182 SVLCPMVVETNL 193

Length = 275

>gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 22/196 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ G+VVL+TG + GIG  +A  +    A +V+  RR        +  +   + F     
Sbjct: 3   DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA------PETVDGRPAEF---HA 53

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP-----AMDINF 158
           ADV   +     VD  +E  GRLD LV NAG  P      Y    + +P      +++N 
Sbjct: 54  ADVRDPDQVAALVDAIVERHGRLDVLVNNAGGSP------YALAAEASPRFHEKIVELNL 107

Query: 159 WGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                    A   ++Q    G I+ + S +G  P P  + Y A+KA  + L  +L VE+ 
Sbjct: 108 LAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAGLLNLTRSLAVEWA 167

Query: 217 GDIGITIVTPGLIESE 232
             + +  V  GL+ +E
Sbjct: 168 PKVRVNAVVVGLVRTE 183

Length = 252

>gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase

 Score = 78.6 bits (194), Expect = 3e-17
 Identities = 65/198 (32%), Positives = 98/198 (49%), Gaps = 15/198 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV L+TGA++G+G+ +A   A   A +V   R E    E   Q E +G  F L++ 
Sbjct: 2   SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRF-LSLT 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN-----F 158
           AD+S +E  K  VD  +E FG +D LV NAG++     E++++       M++N     F
Sbjct: 59  ADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSE-KDWDDVMNVNLKSVFF 117

Query: 159 WGSAYGTYFAIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
              A   +F    LKQ   GKII +AS   +    R+  Y ASK A   L + L  E+  
Sbjct: 118 LTQAAAKHF----LKQGRGGKIINIASMLSFQGGIRVPSYTASKHAVAGLTKLLANEWAA 173

Query: 218 -DIGITIVTPGLIESEIT 234
             I +  + PG + +  T
Sbjct: 174 KGINVNAIAPGYMATNNT 191

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248

>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated

 Score = 78.6 bits (194), Expect = 4e-17
 Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KV L+TGA  GIG  +A        ++ +V   E   +  AD+    G   A+A+ ADV
Sbjct: 2   SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGK-AIAVKADV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYG 164
           S  +     V   ++ FG L+ +V NAGV P    E  T     K     +IN  G  +G
Sbjct: 61  SDRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDK---VYNINVGGVIWG 117

Query: 165 TYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
              A    K+    GKII   S AG +  P ++ Y+++K A   L +T   +     GIT
Sbjct: 118 IQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVRGLTQTAARDL-ASEGIT 176

Query: 223 I--VTPGLIES 231
           +    PG++++
Sbjct: 177 VNAYAPGIVKT 187

Length = 256

>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional

 Score = 78.8 bits (194), Expect = 4e-17
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++ GK  ++TGA+SGIGK +A E AR  A + +    +     VAD+    G   A+ + 
Sbjct: 4   NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGK-AIGVA 62

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  +     +D   E FG +D LV+NAG+  +   E+Y           I+  G+  
Sbjct: 63  MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENY-SFADWKKMQAIHVDGAFL 121

Query: 164 GTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
            T  A+ ++ +    G +I + S       P  S Y  +K   + L   L  E    ++ 
Sbjct: 122 TTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVR 181

Query: 221 ITIVTPGLI 229
             +V PG +
Sbjct: 182 SHVVCPGFV 190

Length = 262

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 65/192 (33%), Positives = 85/192 (44%), Gaps = 16/192 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV LITG  SGIG+ +A  +A+  A + +V   E +      Q         L IP D
Sbjct: 45  KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGD 104

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYT----DITKPAPAMDINFWG 160
           VS    CK  V+ T+   GRLD LV NA    P    ED T    D T        N + 
Sbjct: 105 VSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKT-----FKTNIYS 159

Query: 161 SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR---VEFGG 217
             + T  A+P+LKQ    II   S  G+     +  Y+A+K A  A   +L    V+ G 
Sbjct: 160 YFHMTKAALPHLKQ-GSAIINTGSITGYEGNETLIDYSATKGAIHAFTRSLAQSLVQKG- 217

Query: 218 DIGITIVTPGLI 229
            I +  V PG I
Sbjct: 218 -IRVNAVAPGPI 228

Length = 290

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 19/220 (8%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
             + GKV +ITG    +G  +A E AR  A++ ++ R + +   V  + +  G   ALA+
Sbjct: 6   FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGE-ALAV 64

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPA-------- 153
            ADV   E  +      +E FG  D L+  A G  P    ++                  
Sbjct: 65  KADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEE 124

Query: 154 -----MDINFWGSAYGTY-FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
                 D+N  G+   T  FA   + +  G II ++S   + P  ++  Y+A+KAA    
Sbjct: 125 GFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTPLTKVPAYSAAKAAISNF 184

Query: 208 YETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKL 245
            + L V F    GI +  + PG   +E       N++G L
Sbjct: 185 TQWLAVHFAKV-GIRVNAIAPGFFLTEQNRALLFNEDGSL 223

Length = 278

>gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated

 Score = 77.9 bits (192), Expect = 7e-17
 Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 36/254 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV +ITGAS+GIG+  A   A+  A  VL       + E  D+ +  G   A A   D+S
Sbjct: 7   KVAVITGASTGIGQASAIALAQEGAY-VLAVDIAEAVSETVDKIKSNGGK-AKAYHVDIS 64

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV---------VPMCLFEDYTDITKPAPAMDINF 158
             +  K F     E FGR+D L  NAGV          P+ +F+           M ++ 
Sbjct: 65  DEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKI---------MAVDM 115

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
            G+   T   +P + +  G II  +S +G       S YNA+K A I   +++ +E+G D
Sbjct: 116 RGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRD 175

Query: 219 -IGITIVTPGLIES----EITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
            I    + PG IE+    ++TG        + E  +  R+ Q  + P+    +P EE AK
Sbjct: 176 GIRANAIAPGTIETPLVDKLTGTS------EDEAGKTFRENQKWMTPLGRLGKP-EEVAK 228

Query: 270 AIVNSACRGDRYLT 283
            +V  A     ++T
Sbjct: 229 LVVFLASDDSSFIT 242

Length = 272

>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR

 Score = 77.6 bits (191), Expect = 9e-17
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 20/249 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKVV++TGA+ GIG+ +A   A   AR++LV R E  + EV  +    G   A    AD+
Sbjct: 4   GKVVVVTGAAQGIGRGVAERLAGEGARVLLVDRSE-LVHEVLAEILAAGDA-AHVHTADL 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
                 +  V   +E FGR+D L+ N  G +    +E Y +    A  +  + + + +  
Sbjct: 62  ETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEA-EIRRSLFPTLWCC 120

Query: 166 YFAIPY-LKQTKGKIIVVASAA--GWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
              +P+ L++ +G I+ V+S A  G    P    Y+A+K    AL  +L  E   D GI 
Sbjct: 121 RAVLPHMLERQQGVIVNVSSIATRGIYRIP----YSAAKGGVNALTASLAFEHARD-GIR 175

Query: 223 I--VTPGLIESE---ITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNS 274
           +  V PG  E+    I          +    Q I D  +           +E  +AI+  
Sbjct: 176 VNAVAPGGTEAPPRKIPRNAAPMSEQEKVWYQRIVDQTLDSSLMGRYGTIDEQVRAILFL 235

Query: 275 ACRGDRYLT 283
           A     Y+T
Sbjct: 236 ASDEASYIT 244

DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 77/251 (30%), Positives = 112/251 (44%), Gaps = 23/251 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            VAGK+VL+TG S GIG+ +A  +    AR+++ AR+     + A++    G    +AIP
Sbjct: 3   SVAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEELSAYGE--CIAIP 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----MDINFW 159
           AD+S  E  +  V    E   RLD LV NAG       E +     P       MDIN  
Sbjct: 61  ADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAF-----PESGWDKVMDINVK 115

Query: 160 GSAYGTYFAIPYLKQTK-----GKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRV 213
              + T   +P L+         ++I + S AG +     ++ Y ASKAA   L   L  
Sbjct: 116 SVFFLTQALLPLLRAAATAENPARVINIGSIAGIVVSGLENYSYGASKAAVHQLTRKLAK 175

Query: 214 EFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
           E  G+ I +  + PG   S++T    LN    LE +++     I L      E+ A   +
Sbjct: 176 ELAGEHITVNAIAPGRFPSKMT-AFLLNDPAALEAEEK----SIPLGRWGRPEDMAGLAI 230

Query: 273 NSACRGDRYLT 283
             A R   YLT
Sbjct: 231 MLASRAGAYLT 241

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 49  VVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           V+++TGAS GIG+ LA E  +R   + +VL+AR E  L+E+  + EL        + AD+
Sbjct: 1   VIILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQEL--KEELRPGLRVTTVKADL 58

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           S     +  ++   +  G  D L+ NAG + P+   E   D+ +     D+N       T
Sbjct: 59  SDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEF-IDLDELQKYFDLNLTSPVCLT 117

Query: 166 YFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAA 203
              +   K+   K  ++ V+S A   P      Y +SKAA
Sbjct: 118 STLLRAFKKRGLKKTVVNVSSGAAVNPFKGWGLYCSSKAA 157

Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241

>gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 11/191 (5%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAI 102
           D+ G+V  +TGA SGIG+ +A   A+  A + L   R    L E A+  E  G   A+ I
Sbjct: 5   DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRR-AIQI 63

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF---W 159
            ADV+   D +  V  T    G L   V  AG+      E+  +  +    MDIN    +
Sbjct: 64  AADVTSKADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEE-EQWQTVMDINLTGVF 122

Query: 160 GSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM--SFYNASKAAKIALYETLRVEFGG 217
            S      A   L+   G I+ +AS +G +    +  + YNASKA  I L ++L +E+ G
Sbjct: 123 LSCQAE--ARAMLENGGGSIVNIASMSGIIVNRGLLQAHYNASKAGVIHLSKSLAMEWVG 180

Query: 218 D-IGITIVTPG 227
             I +  ++PG
Sbjct: 181 RGIRVNSISPG 191

Length = 254

>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +++L+TGA  GIG+  A  YAR  A ++L+ R E +L  V D+ E  G P    IP D+
Sbjct: 12  DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71

Query: 107 SKV--EDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT 145
                ++ +   D   E FGRLD ++ NAG++  +   E   
Sbjct: 72  LTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQD 113

Length = 247

>gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 14/191 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPA 104
           + KV LITG +  IG  +A        R+ +   R       +A +   +    A A+ A
Sbjct: 5   SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQA 64

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPA-----MDINF 158
           D+   +     V   +  FGRLD LV NA    P       T +     A        N 
Sbjct: 65  DLLDPDALPELVAACVAAFGRLDALVNNASSFYP-------TPLGSITEAQWDDLFASNL 117

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
               + +  A P L++ +G I+ +       P      Y A+KAA   L  +L +E   +
Sbjct: 118 KAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAAKAALEMLTRSLALELAPE 177

Query: 219 IGITIVTPGLI 229
           + +  V PG I
Sbjct: 178 VRVNAVAPGAI 188

Length = 249

>gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 41/219 (18%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
           R+IN E   GKV L+TGASSG+G   A   A+  A++VL +RR  +L+E+  + E  G  
Sbjct: 3   RSINLE---GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGA 59

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAP 152
            A  +  DV+  +  K  V       G +D LV N+GV            D+  +     
Sbjct: 60  -AHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFV----- 113

Query: 153 AMDINFWGS-----------------AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMS 195
             D N  G+                 A  T           G+II +AS AG    P++ 
Sbjct: 114 -FDTNTRGAFFVAQEVAKRMIARAKGAGNTK--------PGGRIINIASVAGLRVLPQIG 164

Query: 196 FYNASKAAKIALYETLRVEFGG-DIGITIVTPGLIESEI 233
            Y  SKAA + +   + +E+G   I +  + PG I++EI
Sbjct: 165 LYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEI 203

Length = 258

>gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGASSGIG+  A + AR   R+   +R        A  A + G      +  DV+
Sbjct: 5   KVALVTGASSGIGRATAEKLARAGYRVFGTSRN------PARAAPIPGVEL---LELDVT 55

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
                +  VD  +   GR+D LV NAGV      E+ + I +     D N +G    T  
Sbjct: 56  DDASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEE-SSIAQAQALFDTNVFGILRMTRA 114

Query: 168 AIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGITI 223
            +P++  Q  G+II ++S  G+LP P M+ Y ASK A     E+L  E   FG  I +++
Sbjct: 115 VLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAVEGYSESLDHEVRQFG--IRVSL 172

Query: 224 VTPG 227
           V P 
Sbjct: 173 VEPA 176

Length = 270

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 39/252 (15%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIPAD 105
           GKVV+ITGA+SGIGK  A E A+R A +++  R E +  E A +  +  G+     I  D
Sbjct: 1   GKVVVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD----INFWGS 161
           +S +   + F +  +  F RLD L+ NAG++         D        +    +N+ G 
Sbjct: 61  LSSLASVRQFAEEFLARFPRLDILINNAGIM-APPRRLTKD------GFELQFAVNYLGH 113

Query: 162 AYGTYFAIPYLKQTKGK-IIVVASAA---GWLP-----------PPRMSFYNASKAAKIA 206
              T   +P LK +    I+ V+S A   G +                  Y  SK A I 
Sbjct: 114 FLLTNLLLPVLKASAPSRIVNVSSIAHRAGPIDFNDLDLENNKEYSPYKAYGQSKLANIL 173

Query: 207 LYETLRVEFGGDIGITIV--TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
               L     G  G+T+    PG++ +E+     L +NG   +  ++    +     +  
Sbjct: 174 FTRELARRLEGT-GVTVNALHPGVVRTEL-----LRRNGSFFLLYKL----LRPFLKKSP 223

Query: 265 EECAKAIVNSAC 276
           E+ A+  + +A 
Sbjct: 224 EQGAQTALYAAT 235

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 46  AGKVVLITGAS-SGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIP 103
           AGKVVL+T A+ +GIG   A       AR+V+    ER+L E AD+ A  +G     A+ 
Sbjct: 16  AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVV 75

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+        +D  +E  GRLD LV NAG+       D TD  + +  +D+   G+  
Sbjct: 76  CDVTSEAQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTD-DEWSRVLDVTLTGTFR 134

Query: 164 GTYFAIPYLKQTKGKIIVV--ASAAGWLPPPRMSFYNASKAAKIAL 207
            T  A+ Y++      ++V  AS  GW      + Y A+KA  +AL
Sbjct: 135 ATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAAKAGVMAL 180

Length = 262

>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
            L+ GASSGIG   A E A     + L ARR  +  E+ D+    G   A+A P DV+  
Sbjct: 13  ALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGE-AVAFPLDVTDP 71

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA--MDINFWGSAYGTYF 167
           +  K FV    E  G ++ LV+ AG      F    +I+       + I+  G+      
Sbjct: 72  DSVKSFVAQAEEALGEIEVLVSGAGDT---YFGKLHEISTEQFESQVQIHLVGANRLATA 128

Query: 168 AIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGITIVT 225
            +P  +++ +G +I V S       P M  Y A+KA   A+   L++E  G  +  +IV 
Sbjct: 129 VLPGMIERRRGDLIFVGSDVALRQRPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVH 188

Query: 226 PG 227
           PG
Sbjct: 189 PG 190

Length = 274

>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 20/191 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGKVV++TGA+ GIG+ +A   A   AR+VLV R E  + EVA +    G   ALA+ AD
Sbjct: 7   AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGE-ALALTAD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYT--DITKPAPAMDIN--FWG 160
           +      +  +   +E FGR+D L+ N  G +    FE+Y    I       +I    + 
Sbjct: 65  LETYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEA-----EIRRSLFP 119

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAA--GWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           + +     +P+ L Q  G I+ V+S A  G    P    Y+A+K    AL  +L  E+  
Sbjct: 120 TLWCCRAVLPHMLAQGGGAIVNVSSIATRGINRVP----YSAAKGGVNALTASLAFEYAE 175

Query: 218 D-IGITIVTPG 227
             I +  V PG
Sbjct: 176 HGIRVNAVAPG 186

Length = 260

>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KVV++TG +SGIG  ++   A   A  V+  R         +   L   P A  +  D+
Sbjct: 7   DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRAL--QPRAEFVQVDL 64

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----MDINFWGSA 162
           +    C+  V+ T+  FGR+D LV NAGV       D   +     A    ++ N     
Sbjct: 65  TDDAQCRDAVEQTVAKFGRIDGLVNNAGV------NDGVGLEAGREAFVASLERNLIHYY 118

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
              ++ +P+LK ++G I+ ++S          S Y A+K A++AL
Sbjct: 119 VMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKGAQLAL 163

Length = 258

>gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 29/211 (13%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
             +  KV ++TG S GIGK +        + ++    +E                +    
Sbjct: 2   LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP---------SYNDVDY---F 49

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDIN 157
             DVS  E     +D  +  +GR+D LV NAG+      E Y  I           +++N
Sbjct: 50  KVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI------ESYGAIHAVEEDEWDRIINVN 103

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G    + + IPY LKQ KG II +AS   +      + Y  SK A + L  ++ V++ 
Sbjct: 104 VNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKHAVLGLTRSIAVDYA 163

Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEV 247
             I    V PG I + +     L    +LEV
Sbjct: 164 PTIRCVAVCPGSIRTPL-----LEWAAELEV 189

Length = 258

>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional

 Score = 75.0 bits (185), Expect = 6e-16
 Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 29/232 (12%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
              LITGASSGIGK  A  +A+    L LVAR +  L  +A +    G   A A   D+S
Sbjct: 7   PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVK-AAAYSIDLS 65

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV------VPMCLFEDYTDITKPAPAMDINFWGS 161
             E     +   +E FG  D L+ NAG+      + M L  D+  +      + +N   S
Sbjct: 66  NPEAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPL-SDWQWV------IQLNL-TS 117

Query: 162 AYGTYFAI-PYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE-FGGD 218
            +    A+ P +  +  G II V+S A     P+   Y  SKAA  A  + L  E     
Sbjct: 118 VFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAALAAFTKCLAEEERSHG 177

Query: 219 IGITIVTPG-----LIESEITGGKFLNKNGKLEVD---QEIRDVQISLLPVQ 262
           I +  +T G     L ++E     F +++  L  +   Q I  + ++ LP  
Sbjct: 178 IRVCTITLGAVNTPLWDTETVQADF-DRSAMLSPEQVAQTI--LHLAQLPPS 226

Length = 241

>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional

 Score = 75.4 bits (186), Expect = 6e-16
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAI 102
            + GKV L+TG + G+G  +A  +A R A  LV+  R   +    A + E +G+  A+ +
Sbjct: 3   RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAK-AVFV 61

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            AD+S VEDC+  V    E FGRLD LV  AG+       D    T P    D +F  + 
Sbjct: 62  QADLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILD----TSPE-LFDRHFAVNV 116

Query: 163 YGTYF----AIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAA 203
              +F    AI  +  ++ +G I+ + S +     P ++ Y ASK A
Sbjct: 117 RAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCASKGA 163

Length = 260

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 74.2 bits (183), Expect = 8e-16
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 16/218 (7%)

Query: 48  KVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           KV L+TGA+ GIG  +  + A+     ++L AR   + +   ++    G         DV
Sbjct: 1   KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLS-VRFHQLDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGT 165
           +     +   D   E +G LD LV NAG+     F+D T    +    M  NF+G+   T
Sbjct: 60  TDDASIEAAADFVEEKYGGLDILVNNAGIA-FKGFDDSTPTREQARETMKTNFFGTVDVT 118

Query: 166 YFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
              +P LK++  G+I+ V+S  G L       Y  SKAA  AL   L  E     I +  
Sbjct: 119 QALLPLLKKSPAGRIVNVSSGLGSLTSA----YGVSKAALNALTRILAKELKETGIKVNA 174

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRD-VQISLLP 260
             PG +++++ GGK          ++     V ++LLP
Sbjct: 175 CCPGWVKTDMGGGK-----APKTPEEGAETPVYLALLP 207

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs

 Score = 74.5 bits (183), Expect = 9e-16
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 15/208 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV ++TG   GIGK +  ++     ++V     E +    AD AE  G P    +  DV
Sbjct: 1   GKVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEER---GADFAEAEG-PNLFFVHGDV 56

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNA-----GVVPMCLFEDYTDITKPAPAMDINFWGS 161
           +     K  V   +E  GR+D LV NA     G++   L E++  I      + +N  G 
Sbjct: 57  ADETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRI------LSVNLTGP 110

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
              + +    L + KG+II +AS   +   P    Y ASK   +AL   L +  G DI +
Sbjct: 111 YELSRYCRDELIKNKGRIINIASTRAFQSEPDSEAYAASKGGLVALTHALAMSLGPDIRV 170

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQ 249
             ++PG I +            + +  Q
Sbjct: 171 NCISPGWINTTEQQEFTAAPLTQEDHAQ 198

This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242

>gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 14/189 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV LIT A+ GIG+ +A  +AR  A ++     E +L       EL   P       D
Sbjct: 1   DGKVALITAAAQGIGRAIALAFAREGANVIATDINEEKL------KELERGPGITTRVLD 54

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+  E     V    +  GR+D L   AG V      D  D      AM++N        
Sbjct: 55  VTDKEQ----VAALAKEEGRIDVLFNCAGFVHHGSILDCED-DDWDFAMNLNVRSMYLMI 109

Query: 166 YFAIP-YLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
              +P  L +  G II ++S A  +   P    Y+ +KAA I L +++  +F    I   
Sbjct: 110 KAVLPKMLARKDGSIINMSSVASSIKGVPNRFVYSTTKAAVIGLTKSVAADFAQQGIRCN 169

Query: 223 IVTPGLIES 231
            + PG +++
Sbjct: 170 AICPGTVDT 178

Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241

>gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 53/195 (27%), Positives = 79/195 (40%), Gaps = 11/195 (5%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           +  K VL+TGA+ GIGK          A+ V  A R+      A      G      +  
Sbjct: 1   IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRD--PGSAAHLVAKYGDKVV-PLRL 57

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+  E  K       +    +D ++ NAGV+      +   +      MD+N +G    
Sbjct: 58  DVTDPESIKAAAAQAKD----VDVVINNAGVLKPATLLEEGALEALKQEMDVNVFGLLRL 113

Query: 165 TYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
                P LK    G I+ + S A     P M  Y+ASK+A  +L + LR E     G  +
Sbjct: 114 AQAFAPVLKANGGGAIVNLNSVASLKNFPAMGTYSASKSAAYSLTQGLRAELAAQ-GTLV 172

Query: 224 --VTPGLIESEITGG 236
             V PG I++ +  G
Sbjct: 173 LSVHPGPIDTRMAAG 187

These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235

>gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 67/199 (33%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KVVLITGAS GIG+  A   A R   + +   R+    E    A       A  +  DV+
Sbjct: 3   KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA 62

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
              D     D     FGRLD LV NAG+V P     D  D  +     D N  G+     
Sbjct: 63  NEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLAD-MDAARLRRMFDTNVLGAYLCAR 121

Query: 167 FAIPYLKQTK----GKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGGD-IG 220
            A   L   +    G I+ V+S A  L  P     Y  SK A   L   L  E G   + 
Sbjct: 122 EAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVR 181

Query: 221 ITIVTPGLIESEI--TGGK 237
           +  V PGLIE+EI  +GG+
Sbjct: 182 VNAVRPGLIETEIHASGGQ 200

Length = 248

>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFA--L 100
            + G+V ++TG SSGIG           A + +  R E +L     +A L    P A  L
Sbjct: 5   QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASA--EARLREKFPGARLL 62

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
           A   DV    D   F       FG +D LV NAG   +  F D TD       +++ ++ 
Sbjct: 63  AARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTD-DAWRDELELKYFS 121

Query: 161 SAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
               T   +P L+ +    I+ V S     P P M   +A++A  + L ++L  E     
Sbjct: 122 VINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSAARAGLLNLVKSLATELAPKG 181

Query: 219 IGITIVTPGLIES 231
           + +  +  GL+ES
Sbjct: 182 VRVNSILLGLVES 194

Length = 265

>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
            VVLITG SSGIG+ LA  +      +   AR+        D   L  + F  A+  DV+
Sbjct: 2   PVVLITGCSSGIGRALADAFKAAGYEVWATARKA------EDVEALAAAGFT-AVQLDVN 54

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG--- 164
                    +      G LD L+ NAG   M    D         AM   F  + +    
Sbjct: 55  DGAALARLAEELEAEHGGLDVLINNAGYGAMGPLLD-----GGVEAMRRQFETNVFAVVG 109

Query: 165 -TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIG 220
            T    P L++++G ++ + S +G L  P    Y ASKAA  AL + LR+E   FG  + 
Sbjct: 110 VTRALFPLLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFG--VQ 167

Query: 221 ITIVTPGLIESE 232
           +  V PG I S+
Sbjct: 168 VMEVQPGAIASQ 179

Length = 274

>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 60/190 (31%), Positives = 87/190 (45%), Gaps = 5/190 (2%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPA 104
           + KV ++TGAS GIG  +A   A     + +  A       E+  + E  G   A+A+ A
Sbjct: 4   SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGR-AIAVQA 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+         D     FGR+D LV NAGV+P+    D  D+      +  N  G+   
Sbjct: 63  DVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIAD-FDLEDFDRTIATNLRGAFVV 121

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITI 223
              A  +L Q  G+II ++++   LP P    Y ASKAA   L   L  E  G  I +  
Sbjct: 122 LREAARHLGQ-GGRIINLSTSVIALPLPGYGPYAASKAAVEGLVHVLANELRGRGITVNA 180

Query: 224 VTPGLIESEI 233
           V PG + +E+
Sbjct: 181 VAPGPVATEL 190

Length = 245

>gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 27/211 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  KV++ITG + G+G+ +A   A++ A+L L+   + +L E   +   +G+       
Sbjct: 2   DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTE-VRGYA 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD---ITKPAPA-----MD 155
           A+V+  ED +       E FG+L+ L+ NAG++   L     D    +K +       +D
Sbjct: 61  ANVTDEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVID 120

Query: 156 INFWGSAY-GTYFAIPYLKQ-TKGKIIVVASAA-----GWLPPPRMSFYNASKAAKIALY 208
           +N  G    G   A   ++  +KG II ++S A     G       + Y+ASKA   A+ 
Sbjct: 121 VNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNMG------QTNYSASKAGVAAMT 174

Query: 209 ETLRVE---FGGDIGITIVTPGLIESEITGG 236
            T   E   +G  I +  + PG+IE+E+T  
Sbjct: 175 VTWAKELARYG--IRVAAIAPGVIETEMTAA 203

Length = 253

>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 27/194 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GKV L+TG ++GIG+ +   + +  A++ +V  ++   + V D   L G P       DV
Sbjct: 18  GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDS--LGGEPNVCFFHCDV 75

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAM-----DIN--- 157
           +  +D    VD T++ FG LD +V NAG+  P C      DI     +      D+N   
Sbjct: 76  TVEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPC-----PDIRNVELSEFEKVFDVNVKG 130

Query: 158 -FWGSAYGTYFAIPYLKQTKGKII---VVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            F G  +     IP     KG I+    VASA G L P     Y  SK A + L  ++  
Sbjct: 131 VFLGMKHAARIMIP---LKKGSIVSLCSVASAIGGLGP---HAYTGSKHAVLGLTRSVAA 184

Query: 214 EFGGD-IGITIVTP 226
           E G   I +  V+P
Sbjct: 185 ELGKHGIRVNCVSP 198

Length = 280

>gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 54/172 (31%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  K VL+TGAS GIG+ LA   A   ARL+LV R   +L   A  A L        + 
Sbjct: 2   DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE--ALAARLPYPGRHRWVV 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           AD++     +  +    E  G ++ L+ NAGV    L ED          + +N      
Sbjct: 60  ADLTSEAGREAVLARAREM-GGINVLINNAGVNHFALLEDQDP-EAIERLLALNLTAPMQ 117

Query: 164 GTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            T   +P L  Q    ++ V S  G +  P  + Y ASK A     E LR E
Sbjct: 118 LTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFSEALRRE 169

Length = 263

>gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional

 Score = 73.0 bits (179), Expect = 8e-15
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVL--VARRERQLREVADQAELMGSPFALAI 102
           + G+  LITGA SGIG+  A  +AR  A + L  +   E+   EV    +  G   A+A+
Sbjct: 53  LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRK-AVAL 111

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
           P D+     C+  V+  ++  G LD LV  AG       +D  DIT      D  F  + 
Sbjct: 112 PGDLKDEAFCRQLVERAVKELGGLDILVNIAG--KQTAVKDIADIT--TEQFDATFKTNV 167

Query: 163 YGTYF----AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           Y  ++    AIP+L      II   S   + P P +  Y ++KAA +A  + L  +    
Sbjct: 168 YAMFWLCKAAIPHLP-PGASIINTGSIQSYQPSPTLLDYASTKAAIVAFTKALAKQVAEK 226

Query: 219 -IGITIVTPG 227
            I +  V PG
Sbjct: 227 GIRVNAVAPG 236

Length = 300

>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 32/203 (15%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++ GK++++TG SSGIG  +  E     A +V        +     Q E         +P
Sbjct: 6   NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA-----DIHGGDGQHENY-----QFVP 55

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGSA 162
            DVS  E+  H V   +E FGR+D LV NAG+ +P  L     D   PA   ++N   +A
Sbjct: 56  TDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLL----VDEKDPAGKYELN--EAA 109

Query: 163 YGTYFAI----PYL----------KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
           +   F I     +L          KQ  G I+ ++S AG       S Y A+KAA  +  
Sbjct: 110 FDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEGQSCYAATKAALNSFT 169

Query: 209 ETLRVEFGG-DIGITIVTPGLIE 230
            +   E G  +I +  V PG++E
Sbjct: 170 RSWAKELGKHNIRVVGVAPGILE 192

Length = 266

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K++LITGA+  IGK          ARL+L       L ++ ++   +     +A+  D+
Sbjct: 2   DKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNRVIALELDI 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGS--- 161
           +  E  K  ++  +E FGR+D L+ NA   P      + +         +++N  G+   
Sbjct: 62  TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFLC 121

Query: 162 --AYGTYFAIPYLKQTKGKIIVVASAAGWLPP---------PRMSF-YNASKAAKIALYE 209
             A+   F     KQ KG II +AS  G + P               Y+  KA  I L +
Sbjct: 122 SQAFIKLFK----KQGKGSIINIASIYGVIAPDFRIYENTQMYSPVEYSVIKAGIIHLTK 177

Query: 210 TLRVEFGG-DIGITIVTPGLI 229
            L   +    I +  ++PG I
Sbjct: 178 YLAKYYADTGIRVNAISPGGI 198

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR

 Score = 71.9 bits (176), Expect = 9e-15
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK  LITG++ GIG+  A  Y R  AR+ +    +  L      A  +G P A AI  DV
Sbjct: 3   GKTALITGSARGIGRAFAQAYVREGARVAIA---DINLEAARATAAEIG-PAACAISLDV 58

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +        V   ++ +G +D LV NA +  +       DIT+   + D  F  +  GT 
Sbjct: 59  TDQASIDRCVAALVDRWGSIDILVNNAALFDL---APIVDITR--ESYDRLFAINVSGTL 113

Query: 167 FAIPYLKQTK------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
           F +  + +        GKII +AS AG      +  Y A+KAA I+L ++  +      I
Sbjct: 114 FMMQAVARAMIAQGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGI 173

Query: 220 GITIVTPGLIESE 232
            +  + PG+++ E
Sbjct: 174 NVNAIAPGVVDGE 186

This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 56/199 (28%), Positives = 82/199 (41%), Gaps = 17/199 (8%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVS 107
           V ++TGAS GIG+ +A E A R   + +    +  Q  EV  +    G   A+   AD+ 
Sbjct: 3   VAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRR-AIYFQADIG 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
           ++ D +  +D   E FGRLD LV NAG+       D  D+T    + D     +  G +F
Sbjct: 62  ELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPR-GDLLDLT--EDSFDRLIAINLRGPFF 118

Query: 168 ----------AIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                       P         II V S   +L  P    Y  SKA        L     
Sbjct: 119 LTQAVARRMVEQPDRFDGPHRSIIFVTSINAYLVSPNRGEYCISKAGLSMATRLLAYRLA 178

Query: 217 GD-IGITIVTPGLIESEIT 234
            + I +  + PGLI +++T
Sbjct: 179 DEGIAVHEIRPGLIHTDMT 197

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 26/194 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLV---LVARRERQLRE------VADQAELMGSP 97
           G+VVL+TGA  G+G+  A  +A R A++V   L   R+   +       V D+ +  G  
Sbjct: 5   GRVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGGK 64

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAP 152
              A+ A+   VED +  V   ++ FGR+D LV NAG++    F     ED+  +     
Sbjct: 65  ---AV-ANYDSVEDGEKIVKTAIDAFGRVDILVNNAGILRDRSFAKMSEEDWDLV----- 115

Query: 153 AMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
            M ++  GS   T  A PY+ KQ  G+II  +SAAG       + Y+A+K   + L  TL
Sbjct: 116 -MRVHLKGSFKVTRAAWPYMRKQKFGRIINTSSAAGLYGNFGQANYSAAKLGLLGLSNTL 174

Query: 212 RVEFGGDIGITIVT 225
            +E G    IT  T
Sbjct: 175 AIE-GAKYNITCNT 187

Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250

>gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 40  INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
           +NA D +GK V +TGA+ GIG  +A  +    A+++   +          Q +   + F 
Sbjct: 1   MNAMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLT------QEDYPFATFV 54

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDIN 157
           L + +D + V          +   G LD LV  AG++ M   +  +  D  +      +N
Sbjct: 55  LDV-SDAAAVAQV---CQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQ---TFAVN 107

Query: 158 FWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G+       +P  ++ + G I+ V S A  +P   M+ Y ASKAA  +L + + +E  
Sbjct: 108 AGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGASKAALTSLAKCVGLELA 167

Query: 217 G-DIGITIVTPG 227
              +   +V+PG
Sbjct: 168 PYGVRCNVVSPG 179

Length = 252

>gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 17/240 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPA 104
           +GK+ L+TGAS GIG+ +A +     A + +  R    QL   A++ E  G    + +  
Sbjct: 2   SGKIALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGK-CIPVRC 60

Query: 105 DVSKVEDCKHFVD-VTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAM--DINFWG 160
           D S  ++ +   + V  E  GRLD LV NA   V + L        +  P +  DIN  G
Sbjct: 61  DHSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEEPPTIWDDINNVG 120

Query: 161 ---SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                  + +A P + +    +IV+ S+ G L       Y   KAA   +   +  E   
Sbjct: 121 LRAHYACSVYAAPLMVKAGKGLIVIISSTGGLEYLFNVAYGVGKAAIDRMAADMAHELKP 180

Query: 218 DIGITIVT--PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA 275
             G+ +V+  PG + +E+      +  G     +  RD     L  + TE   + +V  A
Sbjct: 181 H-GVAVVSLWPGFVRTELVLEMPEDDEGSWHAKE--RDA---FLNGETTEYSGRCVVALA 234

This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265

>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional

 Score = 70.3 bits (173), Expect = 4e-14
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 14/159 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-------RRERQLREVADQAELMGS 96
            ++GK + ITGAS GIG  +A   AR  A +V+ A       +    +   A++ E  G 
Sbjct: 3   SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG 62

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDI 156
             AL +  DV   +     V   +E FG +D  V NA  + +   ED T + +      I
Sbjct: 63  Q-ALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTED-TPMKRFDLMQQI 120

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMS 195
           N  G+   +   +P+LK+++   I+  S     PP  + 
Sbjct: 121 NVRGTFLVSQACLPHLKKSENPHILTLS-----PPLNLD 154

Length = 273

>gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 74/267 (27%), Positives = 109/267 (40%), Gaps = 41/267 (15%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV-------------ARRERQLREVADQA 91
           + GKV  ITGA+ G G+  A   A   A ++ +                   L E A   
Sbjct: 1   LEGKVAFITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLV 60

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC----LFEDYTDI 147
           E +G    LA  ADV  + + +  V+  +E FGRLD +V NAGV+       L E+  D 
Sbjct: 61  EALGRK-VLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDT 119

Query: 148 TKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKI 205
                 +DIN  G        +P++ +    G II+ +S AG    P ++ Y A+K   +
Sbjct: 120 V-----LDINLTGVWRTCKAVVPHMIERGNGGSIIITSSVAGLKALPGLAHYAAAKHGLV 174

Query: 206 ALYETLRVEFGG-DIGITIVTPG-----LIESEITGGKFLNKNGKLEVDQEIRDVQISLL 259
            L +TL  E     I +  + P      +I  E     FL          E     +  L
Sbjct: 175 GLTKTLANELAEYGIRVNSIHPYSVDTPMIAPEAMREAFLKY-------PEAARAFMPAL 227

Query: 260 PVQ---PTEECAKAIVNSACRGDRYLT 283
           PV    P E+ A A++  A    RY+T
Sbjct: 228 PVSGFVPPEDVADAVLWLASDESRYIT 254

Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265

>gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 27/202 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL---MGSPFALAIPA 104
           K VLITG  SG G  LA +        VL       L +    A+    + S     +  
Sbjct: 1   KAVLITGCDSGFGNLLA-KKLDSLGFTVLAG----CLTKNGPGAKELRRVCSDRLRTLQL 55

Query: 105 DVSKVEDCKHFVDVTMEHFGR--LDHLVTNAGVV------PMCLFEDYTDITKPAPAMDI 156
           DV+K E  K       EH G   L  LV NAG++       +   +DY         M++
Sbjct: 56  DVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKC------MEV 109

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE-- 214
           N +G+   T   +P L++ KG+++ V+S  G +P P    Y ASKAA  A  ++LR E  
Sbjct: 110 NLFGTVEVTKAFLPLLRRAKGRVVNVSSMGGRVPFPAGGAYCASKAAVEAFSDSLRRELQ 169

Query: 215 -FGGDIGITIVTPGLIESEITG 235
            +G  + ++I+ PG  ++ ITG
Sbjct: 170 PWG--VKVSIIEPGNFKTGITG 189

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281

>gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 15/199 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV ++TG ++G+G+  A   A+  A +++         E     E  G      + 
Sbjct: 12  SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVT-FVQ 69

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            D++K E  +  V   +E FG++D LV NAG +      +Y D    A  MDIN   S Y
Sbjct: 70  VDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNA-VMDINL-NSVY 127

Query: 164 GTYFAIP--YLKQTKGKIIVVAS----AAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
               A+     KQ  GKII +AS      G   P     Y ASK     L +    E   
Sbjct: 128 HLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPA----YTASKHGVAGLTKAFANELAA 183

Query: 218 -DIGITIVTPGLIESEITG 235
            +I +  + PG I++  T 
Sbjct: 184 YNIQVNAIAPGYIKTANTA 202

Length = 258

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 21/188 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIPAD 105
            +V ++ G    +G  L +  A    R+ +      +   VA +     G   A    AD
Sbjct: 2   NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGAD 61

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV---PMCLFEDYTDITKPAPAMDINFWGSA 162
            +  +          E FGR+D LV NAG+     +  F+   D  +   ++ +N  G  
Sbjct: 62  ATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQ-LGDFDR---SLQVNLVG-- 115

Query: 163 YGTYF------AIPYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              YF      +   ++   +G+II + S +G +     S Y+A+K   + L ++L ++ 
Sbjct: 116 ---YFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDL 172

Query: 216 GGDIGITI 223
             + GIT+
Sbjct: 173 -AEYGITV 179

Length = 259

>gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 54/203 (26%), Positives = 83/203 (40%), Gaps = 25/203 (12%)

Query: 51  LITGASSGIGKHLAYEYARRRARLVLVA--RRERQLREVADQA-ELMGSPFALAIPADVS 107
            ITGA+ G+G+ +A   A + A+ V +        L   A +     G   A A   DV+
Sbjct: 3   FITGAAGGLGRAIARRMAEQGAK-VFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVT 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV-----VPMCLFEDYTDITKPAPAMDINFWGSA 162
                +  +    +  G L  LV NAGV     +     +++  +      M IN     
Sbjct: 62  DEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRV------MAINVESIF 115

Query: 163 YGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA------KIALYETLRVEF 215
            G   A+PYL+ ++   I+ ++S A +   P  + YNASKAA       IAL    R   
Sbjct: 116 LGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVASLTKSIALDCARR--- 172

Query: 216 GGDIGITIVTPGLIESEITGGKF 238
           G D+    + P  I + I    F
Sbjct: 173 GLDVRCNSIHPTFIRTGIVDPIF 195

Length = 251

>gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K   ITGASSG G+ +     R  AR   VA   R+   + D     G    +    DV
Sbjct: 2   SKTWFITGASSGFGRGMT---ERLLARGDRVAATVRRPDALDDLKARYGDRLWVL-QLDV 57

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +     +  VD      GR+D +V+NAG       E+ +D  +    +D N  GS     
Sbjct: 58  TDSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSD-AQIRRQIDTNLIGSIQVIR 116

Query: 167 FAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITIV 224
            A+P+L +Q  G+I+ V+S  G +  P  S Y+A+K       E +  E     I  TIV
Sbjct: 117 AALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIV 176

Query: 225 TPG 227
            PG
Sbjct: 177 EPG 179

Length = 276

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 17/193 (8%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           V ++TG ++GIGK +A   A+  A +V+   +      VA   +  G   A+ +  +V+ 
Sbjct: 1   VAIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQAGGQ-AIGLECNVTS 59

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAG-------VVPMCLFEDYTDITKPAPAMDINFWGS 161
            +D +  V  T+  FG +  LV NAG        +PM   ED+        A  +N + +
Sbjct: 60  EQDLEAVVKATVSQFGGITILVNNAGGGGPKPFDMPM-TEEDF------EWAFKLNLFSA 112

Query: 162 AYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
              +    P++++   G I+ ++S +      R++ Y +SKAA   +   L  + G   I
Sbjct: 113 FRLSQLCAPHMQKAGGGAILNISSMSSENKNVRIAAYGSSKAAVNHMTRNLAFDLGPKGI 172

Query: 220 GITIVTPGLIESE 232
            +  V PG ++++
Sbjct: 173 RVNAVAPGAVKTD 185

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 19/195 (9%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK  +ITGA +GIGK +A  +A   A +V+          V D+ + +G   A A   D+
Sbjct: 11  GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ-AFACRCDI 69

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGV-------VPMCLFEDYTDITKPAPAMDINFW 159
           +  ++     D  +   G++D LV NAG        +PM  F           A ++N +
Sbjct: 70  TSEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFR---------RAYELNVF 120

Query: 160 GSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG- 217
              + +    P + K   G I+ + S A       M+ Y +SKAA   L   +  + G  
Sbjct: 121 SFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK 180

Query: 218 DIGITIVTPGLIESE 232
           +I +  + PG I ++
Sbjct: 181 NIRVNGIAPGAILTD 195

Length = 255

>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional

 Score = 67.3 bits (164), Expect = 3e-13
 Identities = 59/197 (29%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           ++ K +L+TGAS G+G+ +A  YA   A ++LVAR +++L +V D     G P   AI  
Sbjct: 4   LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRF 63

Query: 105 DVSKVEDCKHF----VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
           D+   E+ K F      +     G+LD +V  AG        D+  + +      IN   
Sbjct: 64  DLMSAEE-KEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVA 122

Query: 161 SAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAA-----KIALYETLRVE 214
               T    P LKQ+    +I V  + G  P      + ASKAA     K+A  E    E
Sbjct: 123 PMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGASKAALNYLCKVAADEW---E 179

Query: 215 FGGDIGITIVTPGLIES 231
             G++   ++ PG I S
Sbjct: 180 RFGNLRANVLVPGPINS 196

Length = 239

>gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 21/205 (10%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           V++TGA+ GIG+ +A    +  A ++ +      L E  D   L         P DV+  
Sbjct: 1   VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLLLEYGDPLRL--------TPLDVADA 52

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSAYG 164
              +      +   G +D LV  AGV+          ED+           +N  G    
Sbjct: 53  AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQT------FAVNVTGVFNL 106

Query: 165 TYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
                P++K +  G I+ VAS A  +P   M+ Y ASKAA  +L + L +E     +   
Sbjct: 107 LQAVAPHMKDRRTGAIVTVASNAAHVPRISMAAYGASKAALASLSKCLGLELAPYGVRCN 166

Query: 223 IVTPGLIESEITGGKFLNKNGKLEV 247
           +V+PG  ++ +    + +++G  +V
Sbjct: 167 VVSPGSTDTAMQRTLWHDEDGAAQV 191

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244

>gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 31/208 (14%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AGKV ++TG ++ IG  +A       AR+ +V         VA     +G   A  I 
Sbjct: 3   GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LGER-ARFIA 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED---YTDITKPAPAMDINFWG 160
            D++     +  V   +  FGR+D LV  A     C + D    +       A+D+N   
Sbjct: 59  TDITDDAAIERAVATVVARFGRVDILVNLA-----CTYLDDGLASSRADWLAALDVNLVS 113

Query: 161 SAYGTYFAIPYLKQTKGKIIVVAS------AAG-WLPPPRMSFYNASKAAKIALYETLRV 213
           +A     A P+L +  G I+   S        G WL       Y ASKAA   L  ++ +
Sbjct: 114 AAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGRWL-------YPASKAAIRQLTRSMAM 166

Query: 214 EFGGD-IGITIVTPGLIES----EITGG 236
           +   D I +  V+PG   S    E++GG
Sbjct: 167 DLAPDGIRVNSVSPGWTWSRVMDELSGG 194

Length = 261

>gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

 Score = 66.5 bits (162), Expect = 8e-13
 Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 23/206 (11%)

Query: 40  INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
           +   D+ GKV +ITG ++G+G+ +A   A+  A +V V   E    E   Q E +G  F 
Sbjct: 1   MQLFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAP--ETQAQVEALGRKFH 58

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV---PMCLF--EDYTDITKPAPAM 154
             I AD+ + +D    V   +E  G +D L+ NAG++    +  F  +D+ D+      +
Sbjct: 59  -FITADLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDV------I 111

Query: 155 DIN-----FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYE 209
           +IN     F   A    F     +   GKII +AS   +    R+  Y ASK+A + L  
Sbjct: 112 NINQKTVFFLSQAVAKQFV---KQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMGLTR 168

Query: 210 TLRVEFGG-DIGITIVTPGLIESEIT 234
            L  E    +I +  + PG + ++ T
Sbjct: 169 ALATELSQYNINVNAIAPGYMATDNT 194

Length = 251

>gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G  +LITG +SGIG  LA  +      +++  R E +L E   +     +P       DV
Sbjct: 5   GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE-----NPEIHTEVCDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD-------INFW 159
           +  +  +  V+   + +  L+ L+ NAG+       +  D+T     +D        N  
Sbjct: 60  ADRDSRRELVEWLKKEYPNLNVLINNAGIQ-----RNE-DLTGAEDLLDDAEQEIATNLL 113

Query: 160 GSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
                T   +P+L +Q +  II V+S   ++P      Y A+KAA  +    LR
Sbjct: 114 APIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALR 167

Length = 245

>gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 25/194 (12%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
            VLITGA+SGIGK LA +YA++  +++   R +  L E+  Q+    + F LA   DV+ 
Sbjct: 3   AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSA---NIFTLAF--DVTD 57

Query: 109 VEDCKHFVDVTMEHFGRL----DHLVTNAGVVPMCLFED--YTDITKPAPAMDINFWGSA 162
                     T     +L    +  + NAG    C + D    D T  A   ++N  G A
Sbjct: 58  HPG-------TKAALSQLPFIPELWIFNAG---DCEYMDDGKVDATLMARVFNVNVLGVA 107

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
                  P+L     ++++V S A  L  PR   Y ASKAA      TL+++     GI 
Sbjct: 108 NCIEGIQPHL-SCGHRVVIVGSIASELALPRAEAYGASKAAVAYFARTLQLDL-RPKGIE 165

Query: 223 IVT--PGLIESEIT 234
           +VT  PG + + +T
Sbjct: 166 VVTVFPGFVATPLT 179

Length = 240

>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 54/180 (30%), Positives = 72/180 (40%), Gaps = 23/180 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D +GK VL+TGASSGIG+  A   A+R AR+V  A      R  A    L G      + 
Sbjct: 6   DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA------RNAAALDRLAGETGCEPLR 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-----VPMCLFEDYTDITKPAPAMDINF 158
            DV         +   +   G  D LV  AG+           E +  +      M +N 
Sbjct: 60  LDVG----DDAAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRV------MAVNA 109

Query: 159 WGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
            G+A         +      G I+ V+S A  +  P    Y ASKAA  A+   L VE G
Sbjct: 110 RGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVLCVELG 169

Length = 245

>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 18/195 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++AGK  L+TG + GIG           AR+V  AR   +  ++ +  E         + 
Sbjct: 6   ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS--RPDDLPEGVEF--------VA 55

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG--VVPMCLFEDYTDITKPAPAMDINFWGS 161
           AD++  E C       +E  G +D LV   G    P   F   TD  +    +++N   +
Sbjct: 56  ADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTD-EEWQDELNLNLLAA 114

Query: 162 AYGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGGDI 219
                  +P  + +  G II V S    LP P  +  Y A+KAA     ++L  E     
Sbjct: 115 VRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTYSKSLSKEVAPK- 173

Query: 220 GITI--VTPGLIESE 232
           G+ +  V+PG IE+E
Sbjct: 174 GVRVNTVSPGWIETE 188

Length = 260

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 31/209 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADV 106
            V L+TG   GIG  +A   A     L +  R + + L     +   +G    +  PADV
Sbjct: 3   PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVE-VIFFPADV 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAYG 164
           + +   +  +D     +GR+D LV NAGV    +  D  D+T  +    + IN      G
Sbjct: 62  ADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVK-VRGDLLDLTPESFDRVLAIN----LRG 116

Query: 165 TYFAIPYLKQTKGK---------------IIVVASA-AGWLPPPRMSFYNASKAAKIALY 208
            +F    L Q   K               I+ V+S  A  + P R   Y  SKA      
Sbjct: 117 PFF----LTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNR-GEYCISKAGLSMAA 171

Query: 209 ETLRVEFGGD-IGITIVTPGLIESEITGG 236
           +        + IG+  V PGLI++++T  
Sbjct: 172 QLFAARLAEEGIGVYEVRPGLIKTDMTAP 200

Length = 256

>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 26/200 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +VVL+TGAS G+G  +A  +AR  AR+V+   R  +  E    A   G   A+AI ADV 
Sbjct: 1   QVVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAV--AAEAGER-AIAIQADVR 57

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDIN-------FW 159
             +  +  ++    HFG +D +V NA +       D+  D  +      I+         
Sbjct: 58  DRDQVQAMIEEAKNHFGPVDTIVNNALI-------DFPFDPDQRKTFDTIDWEDYQQQLE 110

Query: 160 GSAYGTY----FAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           G+  G        +P  K+   G++I + +     P      Y  +KAA +     +  E
Sbjct: 111 GAVKGALNLLQAVLPDFKERGSGRVINIGTNLFQNPVVPYHDYTTAKAALLGFTRNMAKE 170

Query: 215 FGGDIGITI--VTPGLIESE 232
            G   GIT+  V+ GL++  
Sbjct: 171 LGPY-GITVNMVSGGLLKVT 189

This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246

>gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 63/197 (31%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV++ITGAS GIG   A   A R   + L   R R   E   QA       ALA+ ADV+
Sbjct: 3   KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA 62

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
              D     +      GRLD LV NAG++   +  +  D  +       N  GS      
Sbjct: 63  DEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCARE 122

Query: 168 AIPYLKQTK----GKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGGD-IGI 221
           A+  +        G I+ V+S A  L  P     Y ASK A   +   L  E   + I +
Sbjct: 123 AVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASKGAIDTMTIGLAKEVAAEGIRV 182

Query: 222 TIVTPGLIESEI--TGG 236
             V PG+I +EI  +GG
Sbjct: 183 NAVRPGVIYTEIHASGG 199

Length = 248

>gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 40  INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
           ++A  + GKV ++TG  +G+G+ +A   A     +V +   E    E  +Q   +G  F 
Sbjct: 3   LDAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRF- 59

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDIN 157
           L++ AD+ K++     ++  +  FG +D LV NAG++     ED  + ++      M++N
Sbjct: 60  LSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLIRR---EDAIEFSEKDWDDVMNLN 116

Query: 158 -----FWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
                F   A   +F    + Q   GKII +AS   +    R+  Y ASK+  + +   +
Sbjct: 117 IKSVFFMSQAAAKHF----IAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLM 172

Query: 212 RVEFGG-DIGITIVTPGLIESEIT 234
             E+   +I +  + PG + +  T
Sbjct: 173 ANEWAKHNINVNAIAPGYMATNNT 196

Length = 253

>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 16/230 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           + +VV ITG + GIG+ +A  +A    RL+++   +R        AE +G    L++ AD
Sbjct: 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLII---DRDAEGAKKLAEALGDEH-LSVQAD 323

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT--DITKPAPAMDINFWGSA 162
           ++     +         +GRLD LV NAG+        + +  D T+     D+N  G A
Sbjct: 324 ITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTR---VYDVNLSG-A 379

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGI 221
           +    A   L    G I+ + S A  L  P  + Y ASKAA   L  +L  E+    I +
Sbjct: 380 FACARAAARLMSQGGVIVNLGSIASLLALPPRNAYCASKAAVTMLSRSLACEWAPAGIRV 439

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAI 271
             V PG IE+       L  +G+ + D   R + +  L   P EE A+AI
Sbjct: 440 NTVAPGYIET--PAVLALKASGRADFDSIRRRIPLGRLG-DP-EEVAEAI 485

Length = 520

>gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated

 Score = 63.8 bits (155), Expect = 7e-12
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPAD 105
           G+V L+TGA+ GIG  +A        ++VL    RER  +     A+ +G   A  I  D
Sbjct: 10  GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK----VAKALGEN-AWFIAMD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYG 164
           V+        V   +  FGRLD LV NA +  P     +   +      + +N  G    
Sbjct: 65  VADEAQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLL 124

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIV 224
                PYL+   G I+ +AS       P    Y ASK   +AL   L +  G +I +  V
Sbjct: 125 AKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAASKGGLLALTHALAISLGPEIRVNAV 184

Query: 225 TPGLIES 231
           +PG I++
Sbjct: 185 SPGWIDA 191

Length = 255

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 65.3 bits (159), Expect = 7e-12
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 15/188 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA-DQAELMGSPFALAIPA 104
           A +V  +TG + GIG+  A   A   A +VL          VA +     G+  A+A+  
Sbjct: 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKM 472

Query: 105 DVSKVEDCKH-FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           DV+  +  K  F DV +  +G +D +V NAG+     FE+ T          +N    A 
Sbjct: 473 DVTDEQAVKAAFADVALA-YGGVDIVVNNAGIATSSPFEETTLQE-----WQLNLDILAT 526

Query: 164 GTY------FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           G +      F     +   G I+ +AS          S Y+A+KAA+  L   L  E GG
Sbjct: 527 GYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAKAAEAHLARCLAAE-GG 585

Query: 218 DIGITIVT 225
             GI + T
Sbjct: 586 TYGIRVNT 593

Length = 676

>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

 Score = 63.4 bits (154), Expect = 9e-12
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++G+  L+TGAS GIG+ +A     + A + L   R  +L  +A  AEL G    +  P
Sbjct: 3   DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALA--AEL-GERVKI-FP 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           A++S  ++ K            +D LV NAG+    LF   +D    +  +++N   +  
Sbjct: 59  ANLSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDS-VLEVNLTATFR 117

Query: 164 GTY-FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGI 221
            T     P +++  G+II + S  G    P  + Y ASKA  I   ++L  E    ++ +
Sbjct: 118 LTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTV 177

Query: 222 TIVTPGLIESEITG 235
             V PG IES +TG
Sbjct: 178 NCVAPGFIESAMTG 191

Length = 245

>gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           G V ++TG +SG+G         + A++V++         VA             +P DV
Sbjct: 2   GLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPGETVAK-----LGDNCRFVPVDV 56

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP------AMDINFWG 160
           +  +D K  + +    FGRLD +V  AG+       +     +P         +++N  G
Sbjct: 57  TSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNK-KGQQPHSLELFQRVINVNLIG 115

Query: 161 SAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           +      A   + +        +G II  AS A +      + Y+ASK   + +   +  
Sbjct: 116 TFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQIGQAAYSASKGGIVGMTLPIAR 175

Query: 214 EFGGDIGITIVT--PGLIES 231
           +     GI +VT  PGL ++
Sbjct: 176 DLAP-QGIRVVTIAPGLFDT 194

HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252

>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 11/174 (6%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           VL+T +S GIG ++A E  ++ AR+V+ +R E  L +   + +  G  +  A+ AD+S  
Sbjct: 3   VLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVY--AVKADLSDK 60

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPM--CLFED--YTDITKPAPAMDINFWGSAYGT 165
           +D K+ V    E  G +D LV NAG V    C+  +  Y+D  + A    ++     Y T
Sbjct: 61  DDLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAAL---LHLVAPGYLT 117

Query: 166 YFAIP-YL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
              I  +L K+ KG ++ ++S +   P P +   + ++A  + L + +   +GG
Sbjct: 118 TLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGLVQLAKGVSRTYGG 171

Length = 259

>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 16/209 (7%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           V  + GA  G+G  +A  +A     + L ARRE +L  +           A A+P D   
Sbjct: 1   VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAGGSAKAVPTDARD 60

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
            ++     D+  E  G L+ LV NAG  V   + E    + +    M      +A+G + 
Sbjct: 61  EDEVIALFDLIEEEIGPLEVLVYNAGANVWFPILETTPRVFEKVWEM------AAFGGFL 114

Query: 168 -----AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI- 221
                A   L + +G II   + A        + +  +K A  AL +++  E G   GI 
Sbjct: 115 AAREAAKRMLARGRGTIIFTGATASLRGRAGFAAFAGAKFALRALAQSMARELGPK-GIH 173

Query: 222 --TIVTPGLIESEITGGKFLNKNGKLEVD 248
              ++  G I+++    +F  ++ + E D
Sbjct: 174 VAHVIIDGGIDTDFIRERFPKRDERKEED 202

This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238

>gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL----REVADQAELMGSPFALAIP 103
            VVLITG SSGIG HLA   A   ++   V    R L    R       L G        
Sbjct: 1   TVVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLETL-Q 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV   +     V+   E    +D LV NAGV  +   E  +     A   D+N +G+  
Sbjct: 60  LDVCDSKSVAAAVERVTE--RHVDVLVCNAGVGLLGPLEALS-EDAMASVFDVNVFGTVR 116

Query: 164 GTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDI 219
                +P +K+   G+I+V +S  G    P    Y ASK A   L E+L V+   F   +
Sbjct: 117 MLQAFLPDMKRRGSGRILVTSSVGGLQGLPFNDVYCASKFALEGLCESLAVQLLPFN--V 174

Query: 220 GITIVTPGLIESE 232
            ++++  G + + 
Sbjct: 175 HLSLIECGPVHTA 187

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 18/194 (9%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
           ++ +AG+V +ITG  SGIG   A   A   A +V+        +  AD+   +G  F   
Sbjct: 2   SQRLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADE---VGGLF--- 55

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED----YTDITKPAPAMDIN 157
           +P DV+  +      D   E +G +D    NAG+ P    ED     T +       D+N
Sbjct: 56  VPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGISPP---EDDSILNTGLDAWQRVQDVN 112

Query: 158 FWGSAYGTYFAIPYLK-QTKGKIIVVAS--AAGWLPPPRMSFYNASKAAKIALYETLRVE 214
                     A+P++  Q KG II  AS  A       ++S Y ASK   +A+   L V+
Sbjct: 113 LTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQIS-YTASKGGVLAMSRELGVQ 171

Query: 215 FGGD-IGITIVTPG 227
           F    I +  + PG
Sbjct: 172 FARQGIRVNALCPG 185

Length = 255

>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional

 Score = 60.6 bits (147), Expect = 8e-11
 Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ G+  L+TG+S GIG  LA   A+  A ++L  R   +L   A+  +  G   A A+ 
Sbjct: 7   DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLS-AHALA 65

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD----INFW 159
            DV+  +  +  +D      G +D LV NAG+      ED+     PA A +     N  
Sbjct: 66  FDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDF-----PADAFERLLRTNIS 120

Query: 160 GSAY-GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA 203
              Y G   A   + +  GKII +AS    L  P ++ Y A+K A
Sbjct: 121 SVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATKGA 165

Length = 255

>gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs

 Score = 59.8 bits (145), Expect = 8e-11
 Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 21/182 (11%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
            LI GA+ GIG+ LA   A R  RL+L  R    L      A L     ALA PADV+  
Sbjct: 1   ALILGATGGIGRALARALAGRGWRLLLSGRDAGAL------AGLAAEVGALARPADVAAE 54

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAG-VVPMCLFEDYTDITKPAP---AMDINFWGSAYGT 165
            +    V    +  G LD LV  AG ++   L       TKPA     +D N  G+A   
Sbjct: 55  LE----VWALAQELGPLDLLVYAAGAILGKPLAR-----TKPAAWRRILDANLTGAALVL 105

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVT 225
             A+  L     +++ + +    +  P +S Y A+KAA  A  E  R E  G + +T+V 
Sbjct: 106 KHALA-LLAAGARLVFLGAYPELVMLPGLSAYAAAKAALEAYVEVARKEVRG-LRLTLVR 163

Query: 226 PG 227
           P 
Sbjct: 164 PP 165

Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206

>gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 61.8 bits (151), Expect = 8e-11
 Identities = 67/210 (31%), Positives = 91/210 (43%), Gaps = 45/210 (21%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV----ARRERQLREVADQAELMGSPFALA 101
           AGKV L+TGA+ GIG  +A   AR  A +V +    A     L  VA    + G+  AL 
Sbjct: 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEA--LAAVA--NRVGGTALALD 264

Query: 102 IPAD--VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDIT--KPAPAMDIN 157
           I A    +++ +  H      E  G LD +V NAG            IT  K    MD  
Sbjct: 265 ITAPDAPARIAE--HLA----ERHGGLDIVVHNAG------------ITRDKTLANMDEA 306

Query: 158 FWGSAYGTYFAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIA 206
            W S        P L+ T+           G+I+ V+S +G       + Y ASKA  I 
Sbjct: 307 RWDSVLAVNLLAP-LRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAASKAGVIG 365

Query: 207 LYETLRVEFGGDIGITI--VTPGLIESEIT 234
           L + L      + GITI  V PG IE+++T
Sbjct: 366 LVQALAPLL-AERGITINAVAPGFIETQMT 394

Length = 450

>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AGK VLITGAS GIG   A  +A     L LVAR    L  +A               
Sbjct: 4   HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHA 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP 137
            D+S  E      +      G +D LV NAG +P
Sbjct: 64  LDLSSPEA----REQLAAEAGDIDILVNNAGAIP 93

Length = 259

>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D AGK  L+TGA  GIG+      A+  AR+V V+R +  L  +  +      P    + 
Sbjct: 4   DFAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLDSLVRE-----CPGIEPVC 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGS 161
            D+S  +      +  +   G +D LV NA V  +  F    ++TK A   + D+N    
Sbjct: 59  VDLSDWDA----TEEALGSVGPVDLLVNNAAVAILQPFL---EVTKEAFDRSFDVNVRAV 111

Query: 162 AYGTYFAIPYLK--QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
            + +      +      G I+ V+S A        + Y ++KAA   L + + +E G
Sbjct: 112 IHVSQIVARGMIARGVPGSIVNVSSQASQRALTNHTVYCSTKAALDMLTKVMALELG 168

Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244

>gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 63/199 (31%), Positives = 89/199 (44%), Gaps = 29/199 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           + +LITG SSGIG + A        R+    R+E  +   A +AE +      A   D +
Sbjct: 5   RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV--AALEAEGLE-----AFQLDYA 57

Query: 108 KVEDCKHFVDVTMEHF-GRLDHLVTN-----AGVVPMCLFEDYTDITKPAPAM----DIN 157
           + E     V   +E   GRLD L  N      G V     ED      P  A+    + N
Sbjct: 58  EPESIAALVAQVLELSGGRLDALFNNGAYGQPGAV-----EDL-----PTEALRAQFEAN 107

Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF- 215
           F+G    T   IP + KQ +G+I+  +S  G +P      YNASK A   L  TLR+E  
Sbjct: 108 FFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLTLRMELQ 167

Query: 216 GGDIGITIVTPGLIESEIT 234
           G  I ++++ PG IE+   
Sbjct: 168 GSGIHVSLIEPGPIETRFR 186

Length = 277

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 28/207 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP---FALAIP 103
           GK V+ITGA++GIGK  A E ARR AR+++  R   +  E A  AE+         +   
Sbjct: 1   GKTVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAA--AEIRRDTLNHEVIVRH 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV--PMCLFEDYTDITKPAPAMDINFWGS 161
            D++ ++  + F    +    RLD L+ NAGV+  P    ED  ++        +N  G 
Sbjct: 59  LDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFEMQ-----FGVNHLGH 113

Query: 162 AYGTYFAIPYLKQTK-GKIIVVASAA-----------GWLPPPRMSF-YNASKAAKIALY 208
              T   +  LK++   +I+ V+S A                    F Y  SK A +   
Sbjct: 114 FLLTNLLLDLLKKSAPSRIVNVSSLAHKAGKINFDDLNSEKSYNTGFAYCQSKLANVLFT 173

Query: 209 ETL--RVEFGGDIGITIVTPGLIESEI 233
             L  R++ G  + +  + PG++ +E+
Sbjct: 174 RELARRLQ-GTGVTVNALHPGVVRTEL 199

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D AGK V++ G +SGI   +A  +AR  A + + +R + ++     Q +  G P  L + 
Sbjct: 6   DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG-PEGLGVS 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYTDITKPAPA--------- 153
           ADV      +       + FG +D LV+  AG               PAPA         
Sbjct: 65  ADVRDYAAVEAAFAQIADEFGPIDVLVSGAAG-------------NFPAPAAGMSANGFK 111

Query: 154 --MDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
             +DI+  G+      A P L++    II +++   ++P P  +   A+KA    L  TL
Sbjct: 112 TVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQAHVCAAKAGVDMLTRTL 171

Query: 212 RVEFGGDIGITI--VTPGLIE 230
            +E+G + GI +  + PG I 
Sbjct: 172 ALEWGPE-GIRVNSIVPGPIA 191

Length = 264

>gnl|CDD|235608 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 24/230 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK V I G S G+G  +AY   +  A++ + +R E +L+ +       G+     +  DV
Sbjct: 5   GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGN--IHYVVGDV 62

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-DINFWGSAYGT 165
           S  E  ++ ++   +    +D LV   G       ED  +       M   +     Y  
Sbjct: 63  SSTESARNVIEKAAKVLNAIDGLVVTVG----GYVEDTVEEFSGLEEMLTNHIKIPLYAV 118

Query: 166 YFAIPYLKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVE-FGGDIGIT 222
             ++ +LK  +G  IV+ S+   +    P    Y  +KA      E L  E  G  I + 
Sbjct: 119 NASLRFLK--EGSSIVLVSSMSGIYKASPDQLSYAVAKAGLAKAVEILASELLGRGIRVN 176

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
            + P  I  +    +   K  KL  D              P E+ AK I+
Sbjct: 177 GIAPTTISGDFEPERNWKKLRKLGDDM------------APPEDFAKVII 214

Length = 238

>gnl|CDD|187595 cd05334, DHPR_SDR_c_like, dihydropteridine reductase (DHPR), classical (c) SDRs

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +VVL+ G    +G  +   +  R   +  +      L E  +         ++ +    
Sbjct: 1   ARVVLVYGGRGALGSAVVQAFKSRGWWVASI-----DLAENEEADA------SIIVLDSD 49

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-DINFWGSAYGT 165
           S  E  K  V       G++D L+  AG       +  +   K    M   N W S   +
Sbjct: 50  SFTEQAKQVVASVARLSGKVDALICVAGGWAGGSAKSKSF-VKNWDLMWKQNLWTSFIAS 108

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITIV 224
           + A  +L    G +++  + A   P P M  Y A+KAA   L ++L  E  G   G T  
Sbjct: 109 HLATKHLLSG-GLLVLTGAKAALEPTPGMIGYGAAKAAVHQLTQSLAAENSGLPAGSTAN 167

Query: 225 T 225
            
Sbjct: 168 A 168

Dihydropteridine reductase is an NAD-binding protein related to the SDRs. It converts dihydrobiopterin into tetrahydrobiopterin, a cofactor necessary in catecholamines synthesis. Dihydropteridine reductase has the YXXXK of these tyrosine-dependent oxidoreductases, but lacks the typical upstream Asn and Ser catalytic residues. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 221

>gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 11/183 (6%)

Query: 51  LITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVE 110
           L+ G SSGIG  LA  +A   AR+ + +R   +L   A    L G         D++   
Sbjct: 1   LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA--AAARALGGGAPVRTAALDITDEA 58

Query: 111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIP 170
                VD      G  DH+V  A   P         +     AMD  FWG AY    A  
Sbjct: 59  A----VDAFFAEAGPFDHVVITAADTPGGPVRAL-PLAAAQAAMDSKFWG-AYRVARA-A 111

Query: 171 YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIE 230
            +    G +  V+  A   P        A  AA  AL   L +E    + +  V+PGL++
Sbjct: 112 RIAPG-GSLTFVSGFAAVRPSASGVLQGAINAALEALARGLALEL-APVRVNTVSPGLVD 169

Query: 231 SEI 233
           + +
Sbjct: 170 TPL 172

Length = 230

>gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR--EVADQAELMGSPFALA 101
           D+ GK  L+TG+S GIG   A   A   A  V+V  R++  R  +V  + E  G   A A
Sbjct: 3   DLPGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQKAPRANKVVAEIEAAGGR-ASA 60

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDINFWG 160
           + AD++  E     +D   E FG LD LV NA G +   + EDY        AM +N   
Sbjct: 61  VGADLTDEESVAALMDTAREEFGGLDALVLNASGGMESGMDEDY--------AMRLNRDA 112

Query: 161 SAYGTYFAIPYLKQTKGKIIVVAS-AAGWLP-PPRMSFYN---ASK-AAKIALYETLRVE 214
                  A+P L     +++ V S  A ++P    M  Y     SK A + AL       
Sbjct: 113 QRNLARAALP-LMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARSKRAGEDALRALRPEL 171

Query: 215 FGGDIGITIVTPGLIESEIT 234
               IG  +V+  +IE  +T
Sbjct: 172 AEKGIGFVVVSGDMIEGTVT 191

Length = 248

>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARL-VLVARRERQLREVADQAELMGSPFALAIPADV 106
           +V ++T + SGIGK  A   A++   + +     E   +E A++    G   A     D+
Sbjct: 3   QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVR-AEIRQLDL 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           S + +    +D  ++  GR+D LV NAG               P   MD + W   +   
Sbjct: 62  SDLPEGAQALDKLIQRLGRIDVLVNNAG----------AMTKAPFLDMDFDEWRKIFTVD 111

Query: 167 FAIPYL----------KQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
               +L          KQ   G+II + S     P P  S Y A+K A   L + + +E 
Sbjct: 112 VDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHALGGLTKAMALEL 171

Query: 216 GGDIGITI--VTPGLIESEITG 235
             + GI +  V PG I + + G
Sbjct: 172 -VEHGILVNAVAPGAIATPMNG 192

Length = 256

>gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-------QLREVADQAELMGSPF 98
           AGK + ITGAS GIGK +A + AR  A +V+ A+           +   A++ E  G   
Sbjct: 2   AGKTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGK- 60

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
           AL    D+   +  +  V+  +E FG +D LV NA  + +    D T + +    M +N 
Sbjct: 61  ALPCIVDIRDEDQVRAAVEKAVEKFGGIDILVNNASAISLTGTLD-TPMKRYDLMMGVNT 119

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM 194
            G+   +   +PYLK++K   I+  S     PP  +
Sbjct: 120 RGTYLCSKACLPYLKKSKNPHILNLS-----PPLNL 150

This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 21/182 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD---------QAELMGSP 97
           G   L+TG + GIGK  A++ AR+   LVLVAR   +L++V+D         Q + +   
Sbjct: 53  GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVD 112

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDI 156
           F+  I   V ++++    +DV +        L+ N GV  P   F    D       + +
Sbjct: 113 FSGDIDEGVKRIKETIEGLDVGV--------LINNVGVSYPYARFFHEVDEELLKNLIKV 164

Query: 157 NFWGSAYGTYFAIP-YLKQTKGKIIVVASAAGWLPP--PRMSFYNASKAAKIALYETLRV 213
           N  G+   T   +P  LK+ KG II + S A  + P  P  + Y A+KA        L V
Sbjct: 165 NVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYV 224

Query: 214 EF 215
           E+
Sbjct: 225 EY 226

Length = 320

>gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 11/198 (5%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL--VARRERQLREVADQAELMGSPFALAIPA 104
            +  L+TG  SGIG+  A  YAR  A + +  +   E   ++V    E  G   A+ +P 
Sbjct: 49  DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRK-AVLLPG 107

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSA 162
           D+S  +  +  V    +  G LD +   AG        D  D+T         IN +   
Sbjct: 108 DLSDEKFARSLVHEAHKALGGLDIMALVAG--KQVAIPDIADLTSEQFQKTFAINVFALF 165

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           + T  AIP L +    II  +S   + P P +  Y A+KAA +     L  +     I +
Sbjct: 166 WLTQEAIPLLPK-GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRV 224

Query: 222 TIVTPGLIES--EITGGK 237
            IV PG I +  +I+GG+
Sbjct: 225 NIVAPGPIWTALQISGGQ 242

Length = 294

>gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 18/198 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD---QAELMGSPFAL 100
            +AG+V L+TG++ G+G  +A   A   A +++  R    L         A       A 
Sbjct: 8   SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF 67

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV---VPMCLFEDYTDITKPAPAMDIN 157
            I AD   V     F  +  EH GRLD LV N G     P+   +D   I      ++ +
Sbjct: 68  DI-ADEEAVA--AAFARIDAEH-GRLDILVNNVGARDRRPLAELDD-AAIRA---LLETD 119

Query: 158 FWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                  +  A   +K+   G+II + S AG +     + Y A+K     L   L  EFG
Sbjct: 120 LVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLTGLMRALAAEFG 179

Query: 217 GDIGITI--VTPGLIESE 232
              GIT   + PG   +E
Sbjct: 180 PH-GITSNAIAPGYFATE 196

Length = 256

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 57/206 (27%), Positives = 80/206 (38%), Gaps = 22/206 (10%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADVSK 108
           VLITGAS GIG  L  +   R    V+   R      E+   A          +  DV+ 
Sbjct: 1   VLITGASRGIGLELVRQLLARGNNTVIATCRDPSAATEL--AALGASHSRLHILELDVTD 58

Query: 109 VEDCKHFVDVTMEH-FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
            E  +    V        LD L+ NAG++         D         +N      G   
Sbjct: 59  -EIAESAEAVAERLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVN----VLGPLL 113

Query: 168 AI----PYLKQ-TKGKIIVVASAAGWL----PPPRMSFYNASKAAKIALYETLRVEFGGD 218
                 P L +  + KII ++S  G +         S Y ASKAA   L ++L VE   D
Sbjct: 114 LTQAFLPLLLKGARAKIINISSRVGSIGDNTSGGWYS-YRASKAALNMLTKSLAVELKRD 172

Query: 219 IGITIVT--PGLIESEITGGKFLNKN 242
            GIT+V+  PG + +++ G    NK 
Sbjct: 173 -GITVVSLHPGWVRTDMGGPFAKNKG 197

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 33/201 (16%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF---ALAIPA 104
           + VL+TG S G+G  +A  +AR  AR+V+   +        D AE +       A+A+ A
Sbjct: 6   QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE------DAAEALADELGDRAIALQA 59

Query: 105 DVSKVEDCKHFVDVTMEHFGR-LDHLVTNAGVVPMCLFEDYT---DITKPAPAMDI---- 156
           DV+  E  +       EHFG+ +  +V NA         D++   D  K A  +      
Sbjct: 60  DVTDREQVQAMFATATEHFGKPITTVVNNALA-------DFSFDGDARKKADDITWEDFQ 112

Query: 157 -NFWGSAYGTY----FAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
               GS  G       A+P   +Q  G+II + +     P      Y  +KAA + L   
Sbjct: 113 QQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVPYHDYTTAKAALLGLTRN 172

Query: 211 LRVEFGGDIGITI--VTPGLI 229
           L  E G   GIT+  V+ GL+
Sbjct: 173 LAAELGPY-GITVNMVSGGLL 192

Length = 253

>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 57/232 (24%), Positives = 92/232 (39%), Gaps = 22/232 (9%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K+ L+TGA  GIG  +A E      R++          +   +              DV+
Sbjct: 3   KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVT 62

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
             E+C   +    E  G +D LV NAG+    +F     +++ D+      ++ N     
Sbjct: 63  DTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDV------INTNLNSVF 116

Query: 163 YGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             T      +  Q  G+II ++S  G       + Y+A+KA  I   + L  E G   GI
Sbjct: 117 NVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIGFTKALASE-GARYGI 175

Query: 222 TI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAI 271
           T+  + PG I + +            EV Q I + QI +  +   EE A A+
Sbjct: 176 TVNCIAPGYIATPMVE------QMGPEVLQSIVN-QIPMKRLGTPEEIAAAV 220

Length = 245

>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 15/186 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +  L+TGA+ GIG+ LA  +     R++ +      L   AD    +G    + +  D++
Sbjct: 3   RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA---LGDARFVPVACDLT 59

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGTY 166
                   +       G +D LV NAG        D T    +   A+++    +AY   
Sbjct: 60  DAASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLE---AAYLCV 116

Query: 167 FAI--PYLKQTKGKIIVVASAAGW--LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
            A+    LK+++G ++ + S  G   L  P    Y+A+KA  I   + L VE+G   I  
Sbjct: 117 EAVLEGMLKRSRGAVVNIGSVNGMAALGHPA---YSAAKAGLIHYTKLLAVEYGRFGIRA 173

Query: 222 TIVTPG 227
             V PG
Sbjct: 174 NAVAPG 179

Length = 257

>gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 67/242 (27%), Positives = 98/242 (40%), Gaps = 34/242 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARL-VLVARRERQLREVADQAELMGSPFALAIPADV 106
            + L+TG S GIG+  A   A+    + V   +     +EV +     G   A  + AD+
Sbjct: 2   AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGK-AFVLQADI 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           S             +H   L  LV NAG+    LF   T     A  ++     +  G Y
Sbjct: 61  SDENQVVAMFTAIDQHDEPLAALVNNAGI----LFTQCTVENLTAERINRVLSTNVTG-Y 115

Query: 167 F-----AIPYLKQ----TKGKIIVVASAAGWL-PPPRMSFYNASKAAKIALYETLRVEFG 216
           F     A+  +      + G I+ V+SAA  L  P     Y ASK A   L   L +E  
Sbjct: 116 FLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASKGAIDTLTTGLSLEVA 175

Query: 217 GD-IGITIVTPGLIESEI--TGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKA 270
              I +  V PG I +E+  +GG    + G++       D   S +P+Q     EE A+A
Sbjct: 176 AQGIRVNCVRPGFIYTEMHASGG----EPGRV-------DRVKSNIPMQRGGQPEEVAQA 224

Query: 271 IV 272
           IV
Sbjct: 225 IV 226

Length = 247

>gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVL---------VARRERQLREVADQAELMG 95
           + G+VV++TGA  GIG+  A  +A   AR+V+          A      + V D+    G
Sbjct: 4   LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG 63

Query: 96  SPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKP 150
              A+A   D++  +   + VD  +E FG LD LV NAG++   +      E++  +   
Sbjct: 64  GE-AVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAV--- 119

Query: 151 APAMDINFWGSAYGTYFAIPYLK-QTK------GKIIVVASAAGWLPPPRMSFYNASKAA 203
              + ++  G       A  Y + ++K       +II  +S AG         Y+A+KA 
Sbjct: 120 ---IAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGSVGQGNYSAAKAG 176

Query: 204 KIAL 207
             AL
Sbjct: 177 IAAL 180

Length = 286

>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           +  K  ++TG   GIG      +A   A++ +         +VA      G   A A   
Sbjct: 1   LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGN-AQAFAC 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDINFW 159
           D++  +     V    +  G +D LV NAG      ++ +   TK  P      + IN  
Sbjct: 60  DITDRDSVDTAVAAAEQALGPVDVLVNNAG------WDKFGPFTKTEPPLWERLIAINLT 113

Query: 160 GSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-G 217
           G+ +  +  +P + +   G+I+ +AS A  +     + Y A K   +A  +T+  E    
Sbjct: 114 GALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEAVYAACKGGLVAFSKTMAREHARH 173

Query: 218 DIGITIVTPG 227
            I + +V PG
Sbjct: 174 GITVNVVCPG 183

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250

>gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR)

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 55/231 (23%), Positives = 82/231 (35%), Gaps = 55/231 (23%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           VL+TG S GIG  +A   A R +  VLV  R                             
Sbjct: 1   VLVTGGSGGIGGAIARWLASRGSPKVLVVSR----------------------------- 31

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI 169
                            D +V NA ++      D T  ++   A+  N  G+      A 
Sbjct: 32  ----------------RDVVVHNAAILDDGRLIDLTG-SRIERAIRANVVGTRRLLEAAR 74

Query: 170 PYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG 227
             +K    G+ I+++S AG    P +  Y ASKAA   L +    E  G+ +  T V  G
Sbjct: 75  ELMKAKRLGRFILISSVAGLFGAPGLGGYAASKAALDGLAQQWASEGWGNGLPATAVACG 134

Query: 228 LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG 278
                   G  + K       +EI   +   +   P EE A+A++N+  R 
Sbjct: 135 TWA-----GSGMAKGP--VAPEEILGNRRHGVRTMPPEEVARALLNALDRP 178

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186

>gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 18/194 (9%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +V L+TGA+SGIG  +A    +   R+ + AR E  L     +    G   A     DV 
Sbjct: 4   EVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREAGVE-ADGRTCDVR 62

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNA-----GVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            V + +  V   +  +G +D LV NA     G       E + D+      ++ N  G  
Sbjct: 63  SVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELADELWLDV------VETNLTGVF 116

Query: 163 YGTYFAIP---YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
             T   +     L++  G+II +AS  G       + Y+ASK   +   + L +E     
Sbjct: 117 RVTKEVLKAGGMLERGTGRIINIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL-ART 175

Query: 220 GITI--VTPGLIES 231
           GIT+  V PG +E+
Sbjct: 176 GITVNAVCPGFVET 189

Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258

>gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFA--LAIPA 104
              LITG   G+G+ LA   A R AR LVL++R        A     + +  A    +  
Sbjct: 1   GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVAC 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED 143
           DV+  +     +       G L  ++  AGV+   +   
Sbjct: 61  DVADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLAS 99

It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180

>gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
              GK VL+ G S GIG  +   +    A +       +   E      L     A A+ 
Sbjct: 3   AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAE-----RLAQETGATAVQ 57

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            D +  +     V       G LD LV NAG+    +F D  ++   A  +D  F  + +
Sbjct: 58  TDSADRDAVIDVVR----KSGALDILVVNAGI---AVFGDALELD--ADDIDRLFKINIH 108

Query: 164 GTYFA-IPYLKQTK--GKIIVVASAAG-WLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
             Y A +   +Q    G+II++ S  G  +P   M+ Y ASK+A   +   L  +FG   
Sbjct: 109 APYHASVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPR- 167

Query: 220 GITI--VTPGLIESEI 233
           GITI  V PG I+++ 
Sbjct: 168 GITINVVQPGPIDTDA 183

Length = 237

>gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 40/198 (20%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K +LITGA SG G+ +A   AR+   ++   +   Q+  +  +A   G         D+
Sbjct: 2   SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALR-VEKLDL 60

Query: 107 SKVEDCKHF----VDVTMEHFGRLDHLVTNAGV--------VPMCLF-EDYTDITKPAPA 153
           +   D        VDV          L+ NAG+        +P+ L  E +         
Sbjct: 61  TDAIDRAQAAEWDVDV----------LLNNAGIGEAGAVVDIPVELVRELF--------- 101

Query: 154 MDINFWGSAYGTY-FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
            + N +G    T  F    + + KGK++  +S AG +  P    Y ASK A  A+ E + 
Sbjct: 102 -ETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEAMH 160

Query: 213 VE---FGGDIGITIVTPG 227
            E   FG  I +  V PG
Sbjct: 161 AELKPFG--IQVATVNPG 176

Length = 257

>gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARR-----ERQLREVADQAELMGSPFA 99
            G V L+TG + GIG+ LA   ARR  ARLVL+ R      E    +     E +G+   
Sbjct: 204 PGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGAR-V 262

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKP 150
           L I ADV+     +  ++   E +G +D ++  AGV+   L      ED+  +  P
Sbjct: 263 LYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKTAEDFEAVLAP 318

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436

>gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 24/202 (11%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIP 103
           +AGK +LITG++ GIG  LA   A   A +++      +       A+L      A A P
Sbjct: 7   LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAV--AKLRQEGIKAHAAP 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV---PMCLF--EDYTDITKPAPAMDIN- 157
            +V+  ++ +  ++   +  G +D L+ NAG+    P   F  +++ D+      + +N 
Sbjct: 65  FNVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDV------IAVNQ 118

Query: 158 ----FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
                   A   Y     +K+  GKII + S    L    ++ Y ASK A   L   + V
Sbjct: 119 TAVFLVSQAVARYM----VKRQAGKIINICSMQSELGRDTITPYAASKGAVKMLTRGMCV 174

Query: 214 EFGG-DIGITIVTPGLIESEIT 234
           E    +I +  + PG  ++E+T
Sbjct: 175 ELARHNIQVNGIAPGYFKTEMT 196

Length = 254

>gnl|CDD|180669 PRK06720, PRK06720, hypothetical protein; Provisional

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           +AGKV ++TG   GIG++ A   A++ A++++    +   +   ++   +G   AL +  
Sbjct: 14  LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGE-ALFVSY 72

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
           D+ K  D +  + +T+  F R+D L  NAG+
Sbjct: 73  DMEKQGDWQRVISITLNAFSRIDMLFQNAGL 103

Length = 169

>gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 24/253 (9%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALA 101
           +++ GKV L+TGAS GIG+ +A   A   A + +   R ++   E   + E  G   A  
Sbjct: 2   KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGK-AFL 60

Query: 102 IPADVSKVEDCKHFVDVTMEHF------GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD 155
           I AD++ ++  K  V+              +D LV NAG+      E+ T+       M 
Sbjct: 61  IEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDE-IMA 119

Query: 156 INFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           +N     +     +P L+  +G++I ++SA   L       Y  SK A   +   L    
Sbjct: 120 VNIKAPFFLIQQTLPLLR-AEGRVINISSAEVRLGFTGSIAYGLSKGALNTMTLPLAKHL 178

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---LLPVQPTEECAKA 270
            G+ GIT+  + PG  +++I        N KL  D EIR+   +      +   E+ A A
Sbjct: 179 -GERGITVNTIMPGYTKTDI--------NAKLLDDPEIRNFATNSSVFGRIGQVEDIADA 229

Query: 271 IVNSACRGDRYLT 283
           +   A    R++T
Sbjct: 230 VAFLASSDSRWVT 242

Length = 254

>gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 21/190 (11%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           + VL+TGA+ GIG  L+   A    +++ +AR            +  G  FA     D++
Sbjct: 4   RTVLVTGATKGIGLALSLRLANLGHQVIGIARSA--------IDDFPGELFA----CDLA 51

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
            +E     +    E    +D +V N G+  P  L +   D+       D+N   +   T 
Sbjct: 52  DIEQTAATLAQINEIHP-VDAIVNNVGIALPQPLGK--IDLAALQDVYDLNVRAAVQVTQ 108

Query: 167 FAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI-- 223
             +  +K  + G+I+ + S A +    R S Y+A+K+A +    T  +E   + GIT+  
Sbjct: 109 AFLEGMKLREQGRIVNICSRAIFGALDRTS-YSAAKSALVGCTRTWALEL-AEYGITVNA 166

Query: 224 VTPGLIESEI 233
           V PG IE+E+
Sbjct: 167 VAPGPIETEL 176

Length = 234

>gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFAL-AIPA 104
             +  L+TG  SGIGK +A       A +++V R   +L   A++ E +    A+   PA
Sbjct: 6   QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPA 65

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAG 134
           DV+  +     VD      GRL  +V  AG
Sbjct: 66  DVTDEDQVARAVDAATAWHGRLHGVVHCAG 95

Length = 276

>gnl|CDD|187619 cd05361, haloalcohol_DH_SDR_c-like, haloalcohol dehalogenase, classical (c) SDRs

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 11/151 (7%)

Query: 88  ADQAELMGSPFALAIPADVSKVE-DCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYT 145
           AD AE     F    P   +  E   +  VD  ++  G +D LV+N     PM   +  +
Sbjct: 36  ADAAER--QAFESENPGTKALSEQKPEELVDAVLQAGGAIDVLVSNDYIPRPMNPIDGTS 93

Query: 146 --DITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA 202
             DI +   A+ I           AI  +K+   G II + SA    P    S Y  ++A
Sbjct: 94  EADIRQAFEALSIF---PFALLQAAIAQMKKAGGGSIIFITSAVPKKPLAYNSLYGPARA 150

Query: 203 AKIALYETLRVEFGGD-IGITIVTPGLIESE 232
           A +AL E+L  E   D I +  + P    S 
Sbjct: 151 AAVALAESLAKELSRDNILVYAIGPNFFNSP 181

Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242

>gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 29/206 (14%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV---ARRERQLREVADQAELMGSPFAL-AI 102
           GKV L+TGAS GIG+ +A   A   A LV +    R+E     V +     GS F++ A 
Sbjct: 4   GKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGAN 62

Query: 103 PADVSKVEDCKHFVDVTMEH---FGRLDHLVTNAGVVPMCLFEDYTD--------ITKPA 151
              +  VE     +D  +++     + D L+ NAG+ P    E+ T+        +   A
Sbjct: 63  LESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKA 122

Query: 152 PAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
           P   I           A+  L+    +II ++SAA  +  P    Y+ +K A   +  TL
Sbjct: 123 PFFIIQ---------QALSRLRDNS-RIINISSAATRISLPDFIAYSMTKGAINTMTFTL 172

Query: 212 RVEFGGDIGITI--VTPGLIESEITG 235
             + G   GIT+  + PG I++++  
Sbjct: 173 AKQLGAR-GITVNAILPGFIKTDMNA 197

Length = 252

>gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 24/197 (12%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSK 108
           VL+TGAS GIG+ +A   A     + +     R     V    +  G    L +  DV+ 
Sbjct: 1   VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARL-LQFDVAD 59

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT--- 165
              C+  ++  +   G    +V NAG+     F          PA+    W     T   
Sbjct: 60  RVACRTLLEADIAEHGAYYGVVLNAGITRDAAF----------PALSEEDWDIVIHTNLD 109

Query: 166 --YFAI-----PYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             Y  I     P ++  + G+II +AS +G +       Y+A+KA  I   + L VE   
Sbjct: 110 GFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGATKALAVELAK 169

Query: 218 -DIGITIVTPGLIESEI 233
             I +  + PGLI++E+
Sbjct: 170 RKITVNCIAPGLIDTEM 186

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 30/237 (12%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADV 106
           ++ L+TG   GIG  +    A+   R+       E +      +   +G  F +    DV
Sbjct: 1   RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVV-EGDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
           S  E CK  V       G +D LV NAG+     F     E ++ +      +D N    
Sbjct: 60  SSFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAV------IDTNLNSV 113

Query: 162 AYGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
              T   I    ++  G+II ++S  G       + Y+A+KA  I   + L  E G   G
Sbjct: 114 FNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGFTKALAQE-GATKG 172

Query: 221 ITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIV 272
           +T+  ++PG I +++           + + +++ +  ++ +PV      EE A A+ 
Sbjct: 173 VTVNTISPGYIATDMV----------MAMREDVLNSIVAQIPVGRLGRPEEIAAAVA 219

This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score = 49.5 bits (118), Expect = 6e-07
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA----I 102
           GKV++ITGA+SGIG   A  +A   A ++L     R +   +     +   +  A    +
Sbjct: 1   GKVIIITGANSGIGFETARSFALHGAHVILAC---RNMSRASAAVSRILEEWHKARVEAM 57

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV--VPMCLFEDYTDITKPAPAMDINFWG 160
             D++ +   + F +        L  LV NA V  +P  L ED  + T       +N  G
Sbjct: 58  TLDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWTLTEDGLETT-----FQVNHLG 112

Query: 161 SAYGTYFAIPYLKQT-KGKIIVVAS 184
             Y        L+++   ++IVV+S
Sbjct: 113 HFYLVQLLEDVLRRSAPARVIVVSS 137

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|180838 PRK07102, PRK07102, short chain dehydrogenase; Provisional

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 60/245 (24%), Positives = 87/245 (35%), Gaps = 45/245 (18%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K +LI GA+S I +  A  YA   ARL L AR   +L  +AD     G+         V
Sbjct: 1   MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-------VAV 53

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP---MCLF-------EDYTDITKPAPAMDI 156
           S      H +D+           + +   +P   +              D          
Sbjct: 54  S-----THELDIL--DTASHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRT 106

Query: 157 NFWG-SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           NF G  A  T  A  +  +  G I+ ++S AG         Y ++KAA  A    LR   
Sbjct: 107 NFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTAFLSGLRNRL 166

Query: 216 GGDIGITIVT--PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
               G+ ++T  PG + + +T G  L                   L  QP EE AK I  
Sbjct: 167 FKS-GVHVLTVKPGFVRTPMTAGLKLPG----------------PLTAQP-EEVAKDIFR 208

Query: 274 SACRG 278
           +  +G
Sbjct: 209 AIEKG 213

Length = 243

>gnl|CDD|187630 cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 47  GKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           GK +LITG ++   I   +A       A L    + E   + V   AE +G   AL +P 
Sbjct: 1   GKRILITGIANDRSIAWGIAKALHEAGAELAFTYQPEALRKRVEKLAERLG-ESALVLPC 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC-LFEDYTDITKPA--PAMDINFWGS 161
           DVS  E+ K       + +G+LD LV +    P   L   + D ++     A+DI    S
Sbjct: 60  DVSNDEEIKELFAEVKKDWGKLDGLVHSIAFAPKVQLKGPFLDTSRKGFLKALDI----S 115

Query: 162 AY 163
           AY
Sbjct: 116 AY 117

This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 41  NAEDVA---GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
            A D+    G+V ++TGA++G+G   A   A + A +VL  R   + +  A +       
Sbjct: 7   TAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPG 66

Query: 98  FALAIPA-DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
             + +   D++ +   +   D     + R+D L+ NAGV
Sbjct: 67  ADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105

Length = 306

>gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 50/216 (23%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLV-------LVARRERQLREVADQAELMGS 96
            + GK+ LITGAS GIG  +A  YA+  A +V       LV +     RE+  +A   G 
Sbjct: 7   SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAH--GY 64

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV---VPMCLF--EDY-----TD 146
                   DV+  +  +  V    +  G +D LV NAG+   +PM     ED+      D
Sbjct: 65  VC------DVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDID 118

Query: 147 ITKP-------APAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA 199
           +  P        P+M                 +K+  GKII + S    L    +S Y A
Sbjct: 119 LNAPFIVSKAVIPSM-----------------IKKGHGKIINICSMMSELGRETVSAYAA 161

Query: 200 SKAAKIALYETLRVEFGG-DIGITIVTPGLIESEIT 234
           +K     L + +  E+G  +I    + PG I +  T
Sbjct: 162 AKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQT 197

Length = 265

>gnl|CDD|223696 COG0623, FabI, Enoyl-[acyl-carrier-protein]

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 44  DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
            + GK +LI G ++   I   +A   A + A L    + ER  + V + AE +GS   L 
Sbjct: 3   LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVL- 61

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFE-DYTDITKPA--PAMDINF 158
            P DV+  E          + +G+LD LV +    P    + DY D ++     AMDI  
Sbjct: 62  -PCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDI-- 118

Query: 159 WGSAY 163
             SAY
Sbjct: 119 --SAY 121

Length = 259

>gnl|CDD|169389 PRK08339, PRK08339, short chain dehydrogenase; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 28/203 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK+   T +S GIG  +A   AR  A ++L++R E  L++  ++ +   +     I 
Sbjct: 5   DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF--WGS 161
           AD++K ED +  V             + N G   +  F   T   KP   M+++   W  
Sbjct: 65  ADLTKREDLERTVKE-----------LKNIGEPDIFFFS--TGGPKPGYFMEMSMEDWEG 111

Query: 162 A---------YGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
           A         Y T   +P +++   G+II   S A   P P ++  N  + +   L  TL
Sbjct: 112 AVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMAGLVRTL 171

Query: 212 RVEFGGDIGITI--VTPGLIESE 232
             E G   GIT+  + PG+I ++
Sbjct: 172 AKELGPK-GITVNGIMPGIIRTD 193

Length = 263

>gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 24/185 (12%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVL--VARRERQLREVADQAELMG 95
           RT N  D++GKV ++TGA++G+G+  A   AR  A +V+  VA       +V D+    G
Sbjct: 3   RTTNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASAL-DASDVLDEIRAAG 61

Query: 96  SPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLF----EDYTDITKP 150
           +  A+A+  D+S+       V   +   G LD +V NAG+     LF    E++  +   
Sbjct: 62  AK-AVAVAGDISQRATADELVATAVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIA- 118

Query: 151 APAMDINFWGSAYGTYFAIPYLKQTK--------GKIIVVASAAGWLPPPRMSFYNASKA 202
                ++  G    T  A  Y +           G+I+  +S AG + P   + Y A+KA
Sbjct: 119 -----VHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANYGAAKA 173

Query: 203 AKIAL 207
              AL
Sbjct: 174 GITAL 178

Length = 306

>gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 19/203 (9%)

Query: 49  VVLITGASSGIGKHLAYEYARRR----ARLVLVARRERQLREVADQAELMGSPFALAI-- 102
           V L+TGAS G G+ +A E A+      + LVL AR +  LR++  +AE+      L +  
Sbjct: 2   VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQL--KAEIGAERSGLRVVR 59

Query: 103 -PADVSKVEDCKHFVDVTMEHFGRLDH----LVTNAGVVPMC--LFEDYTDITKPAPAMD 155
              D+      +  +    E           L+ NAG +      F D +D T+      
Sbjct: 60  VSLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWA 119

Query: 156 INFWGSAYGTYFAIPYLKQTKG--KIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           +N       T   +   K + G  + +V ++S     P    + Y A KAA+  L++ L 
Sbjct: 120 LNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGWALYCAGKAARDMLFQVLA 179

Query: 213 VEFGGD-IGITIVTPGLIESEIT 234
           +E     + +    PG++++++ 
Sbjct: 180 LEEKNPNVRVLNYAPGVLDTDMQ 202

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256

>gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 17/193 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI--PAD 105
           K VLITG SSGIG   A E  RR  R VL A R+    +VA    L  +   L +  P  
Sbjct: 3   KSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPD--DVARMNSLGFTGILLDLDDPES 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAY 163
           V +  D     +V      RL  L  NAG     ++   + I++         NF+G+  
Sbjct: 60  VERAAD-----EVIALTDNRLYGLFNNAG---FGVYGPLSTISRQQMEQQFSTNFFGTHQ 111

Query: 164 GTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGI 221
            T   +P  L   +G+I++ +S  G +  P    Y ASK A  A  + LR+E     I +
Sbjct: 112 LTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKV 171

Query: 222 TIVTPGLIESEIT 234
           +++ PG I +  T
Sbjct: 172 SLIEPGPIRTRFT 184

Length = 256

>gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 18/186 (9%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +V ++ G    +G+ L +  A     + +         +VAD+        A    AD 
Sbjct: 2   NQVAVVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEYGEKAYGFGADA 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED--YTDITKPAPAMDINFWGSAYG 164
           +  +          E F R+D LV +AG+       D    D  +   ++ +N  G    
Sbjct: 62  TNEQSVIALSKGVDEIFKRVDLLVYSAGIAKSAKITDFELGDFDR---SLQVNLVG---- 114

Query: 165 TYF-------AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            YF        +      +G+II + S +G +     S Y+A+K   + L ++L ++   
Sbjct: 115 -YFLCAREFSKLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDL-A 172

Query: 218 DIGITI 223
           + GIT+
Sbjct: 173 EHGITV 178

Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|219957 pfam08659, KR, KR domain

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 49  VVLITGASSGIGKHLAYEYARRRAR-LVLVARR-------ERQLREVADQ-AELMGSPFA 99
             L+TG   G+G  LA   A R AR LVL++R        E  L E+  + AE+      
Sbjct: 2   TYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVT----- 56

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD 146
             +  DVS  +  +  +         L  ++  AGV+   L  + T 
Sbjct: 57  -VVACDVSDRDAVRALLAEIRADGPPLRGVIHAAGVLRDALLANMTA 102

This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181

>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           +VL+TGA++G G+ +   + ++  +++   RR+ +L+E+ D+   +G         DV  
Sbjct: 2   IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDE---LGDNL-YIAQLDVRN 57

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVV----PMCL--FEDYTDITKPAPAMDINFWGSA 162
               +  +      +  +D LV NAG+     P      ED+  +      +D N  G  
Sbjct: 58  RAAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETM------IDTNNKGLV 111

Query: 163 YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE-FGGDIG 220
           Y T   +P  +++  G II + S AG  P    + Y A+KA        LR +  G  + 
Sbjct: 112 YMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVR 171

Query: 221 ITIVTPGLIE-SEITGGKFLNKNGKLE 246
           +T + PGL+  +E +  +F   +GK E
Sbjct: 172 VTDIEPGLVGGTEFSNVRFKGDDGKAE 198

Length = 248

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           V+ITGASSG+G + A   A+R   +++  R  ++    A +  +    + + I  D+  +
Sbjct: 9   VIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTI-IHIDLGDL 67

Query: 110 EDCKHFVDVTMEHFGR-LDHLVTNAGV 135
           +  + FVD      G+ LD LV NA V
Sbjct: 68  DSVRRFVD-DFRALGKPLDALVCNAAV 93

Length = 322

>gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 37/175 (21%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADV 106
           + V+ITG S G+G+ +A +   +   ++ ++R E + L ++A+Q     +  +L +  DV
Sbjct: 2   RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDL-QDV 60

Query: 107 SKVEDCKHFVDV----TMEHFGRLDHLVTNAGVV-PM---------CLFEDYTDITKPAP 152
            ++E   +F ++      ++   + HL+ NAG+V P+          L  +   +   AP
Sbjct: 61  HELE--TNFNEILSSIQEDNVSSI-HLINNAGMVAPIKPIEKAESEELITNVH-LNLLAP 116

Query: 153 AMDINFWGSAYGTYFAIPYLKQTKG-----KIIVVASAAGWLPPPRMSFYNASKA 202
            +  +             ++K TK      ++I ++S A   P    S Y +SKA
Sbjct: 117 MILTST------------FMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSKA 159

Length = 251

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK  ++TG  SG+G       A+  A +++ ARR    RE    A + G        
Sbjct: 23  DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREAL--AGIDGVEVV---M 77

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
            D++ +E  + F +  ++   R+D L+ NAGV
Sbjct: 78  LDLADLESVRAFAERFLDSGRRIDILINNAGV 109

Length = 315

>gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 28/231 (12%)

Query: 54  GASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDC 112
              + I   +A   A   A +VL       ++  V + A+ + +     IP DV+  ED 
Sbjct: 3   ADDNSIAWAIAKAAAEEGAEVVLTTWPPALRMGAVDELAKELPAD---VIPLDVTSDEDI 59

Query: 113 KHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYTDITKP--APAMDINFWGSAYGTYFAI 169
               +   E  G++D LV +  + P +   + Y D ++     A+DI+ +        A 
Sbjct: 60  DELFEKVKEDGGKIDFLVHSIAMSPEIRKGKPYLDTSREGFLKALDISAYSFISLAKAAK 119

Query: 170 PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GDIGITI--V 224
           P + +  G I+ ++  A     P    Y     AK AL E+L        G  GI +  +
Sbjct: 120 PLMNEG-GSIVALSYIAAERVFP---GYGGMGVAKAAL-ESLARYLAYELGRKGIRVNTI 174

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIV 272
           + G  ++  T G  +    K+       +    + P+      EE A A  
Sbjct: 175 SAGPTKT--TAGSGIGGFDKMV------EYAEEMAPLGRNASAEEVANAAA 217

Length = 239

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 31/88 (35%), Positives = 42/88 (47%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
             V+ITGASSG+G   A   ARR    V++A R+    E A Q   M       +  D++
Sbjct: 2   GTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDLA 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
            ++  + FVD        LD LV NA V
Sbjct: 62  SLDSVRQFVDNFRRTGRPLDALVCNAAV 89

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM---GSPFALAIP 103
           G+  LITGA+SGIGK  A   A+R   + +V R + +  E   + E+    G+       
Sbjct: 1   GRSFLITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEA--RKEIETESGNQNIFLHI 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            D+S  +    FV+   E   +L  L+ NAG    C+     ++T+    ++ NF  +  
Sbjct: 59  VDMSDPKQVWEFVEEFKEEGKKLHVLINNAG----CMVNK-RELTE--DGLEKNFATNTL 111

Query: 164 GTYF----AIPYLKQTKGKIIVVASAAGWL 189
           GTY      IP L++ +   ++  S+ G L
Sbjct: 112 GTYILTTHLIPVLEKEEDPRVITVSSGGML 141

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 50  VLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELM--GSPFALAIPADV 106
            LITG   G+G  +A   A R AR LVL++RR    R  A  A L   G+  ++    DV
Sbjct: 153 YLITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALLRAGGARVSVV-RCDV 211

Query: 107 SKVEDCK 113
           +      
Sbjct: 212 TDPAALA 218

Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375

>gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 33/187 (17%), Positives = 54/187 (28%), Gaps = 36/187 (19%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           +++ GA+  IG  +A   +     ++   R                         D++  
Sbjct: 1   IIVIGATGTIGLAVAQLLSAHGHEVITAGRSSG------------------DYQVDITDE 42

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN------FWGSAY 163
              K       E  G  D +V+ AG        + TD        D          G   
Sbjct: 43  ASIKAL----FEKVGHFDAIVSTAGDAEFAPLAELTD-------ADFQRGLNSKLLGQIN 91

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
                +PYL    G I + +      P P  +       A         +E    I I  
Sbjct: 92  LVRHGLPYLND-GGSITLTSGILAQRPIPGGAAAATVNGALEGFVRAAAIELPRGIRINA 150

Query: 224 VTPGLIE 230
           V+PG++E
Sbjct: 151 VSPGVVE 157

Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198

>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 32/211 (15%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
           ++   K VLITGA+SGIG   A  +  + A++  V        +  D+ +L G+ F   +
Sbjct: 1   QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV--------DKQDKPDLSGN-FH-FL 50

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDY-----TDITKPAPAMDIN 157
             D+S  +D +   D        +D L   AG++     +DY     T + +     D N
Sbjct: 51  QLDLS--DDLEPLFDW----VPSVDILCNTAGIL-----DDYKPLLDTSLEEWQHIFDTN 99

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              +   T   +P  L++  G II + S A ++     + Y ASK A     + L +++ 
Sbjct: 100 LTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQLALDYA 159

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKL 245
            D GI +  + PG +++ +T   F  + G L
Sbjct: 160 KD-GIQVFGIAPGAVKTPMTAADF--EPGGL 187

Length = 235

>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 48  KVVLITGASSGIG----KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA-- 101
           KVVL+TGA+SG+G    + L  E        +++A R  Q  E A +A L   P A    
Sbjct: 2   KVVLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVF 61

Query: 102 --IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP 137
             +  D+S +           + + RLD+L  NAG++P
Sbjct: 62  DYVLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMP 99

3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290

>gnl|CDD|131732 TIGR02685, pter_reduc_Leis, pteridine reductase

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 23/203 (11%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVS 107
             ++TGA+  IG  +A    +   R+VL   R       +A +        A+   AD+S
Sbjct: 3   AAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLS 62

Query: 108 KV----EDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFE-DYTDITKPAPAMDIN---- 157
                   C+  +D     FGR D LV NA    P  L   D  +      ++++     
Sbjct: 63  NSATLFSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAEL 122

Query: 158 FWGSAYGTYFAI-----------PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIA 206
           F  +A   YF I              + T   I+ +  A    P    + Y  +K A   
Sbjct: 123 FGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDAMTDQPLLGFTMYTMAKHALEG 182

Query: 207 LYETLRVEFGG-DIGITIVTPGL 228
           L  +  +E     I +  V PGL
Sbjct: 183 LTRSAALELAPLQIRVNGVAPGL 205

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. Length = 267

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFALAIPADVSK 108
           V +TG +  +G+HL         +++++ R E          E          +  D+++
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|235527 PRK05599, PRK05599, hypothetical protein; Provisional

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 45/193 (23%), Positives = 70/193 (36%), Gaps = 11/193 (5%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           +LI G +S I   +A         +VL ARR    + +A      G+     +  D   +
Sbjct: 3   ILILGGTSDIAGEIATLLCHGE-DVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG----T 165
           +  +  V  T E  G +   V   G+    L +     T  A A++I            T
Sbjct: 62  DTHRELVKQTQELAGEISLAVVAFGI----LGDQERAETDEAHAVEIATVDYTAQVSMLT 117

Query: 166 YFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGITI 223
             A     QT    I+  +S AGW        Y ++KA   A  + L     G  + + I
Sbjct: 118 VLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLII 177

Query: 224 VTPGLIESEITGG 236
             PG +   +T G
Sbjct: 178 ARPGFVIGSMTTG 190

Length = 246

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQA 91
            I   D++GK  ++TGAS G+G  LA   A   A ++L  R   +       +R     A
Sbjct: 6   DITVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDA 65

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH-LVTNAGV 135
           +L      L+  A V+ + +        +   GR  H L+ NAGV
Sbjct: 66  KLSLRALDLSSLASVAALGE-------QLRAEGRPIHLLINNAGV 103

Length = 313

>gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 52/232 (22%), Positives = 80/232 (34%), Gaps = 60/232 (25%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
            ++ITGA+SGIG   A         ++ +  RE      AD            + AD+S 
Sbjct: 1   TIVITGAASGIGAATAELLEDAGHTVIGIDLRE------AD------------VIADLST 42

Query: 109 VEDCKHFV-DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
            E     + DV     G LD LV  AGV    +             + +N++G       
Sbjct: 43  PEGRAAAIADVLARCSGVLDGLVNCAGVGGTTVAGL---------VLKVNYFGLRALMEA 93

Query: 168 AIPYLKQTKG-KIIVVASAAG--------------------------WL-PPPRMSFYNA 199
            +P L++  G   +VV+S AG                               P    Y  
Sbjct: 94  LLPRLRKGHGPAAVVVSSIAGAGWAQDKLELAKALAAGTEARAVALAEHAGQPGYLAYAG 153

Query: 200 SKAAKIALYETLRV---EFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVD 248
           SK A + ++   R     +G  + +  V PG +E+ I      +  G   VD
Sbjct: 154 SKEA-LTVWTRRRAATWLYGAGVRVNTVAPGPVETPILQAFLQDPRGGESVD 204

Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADV 106
           +  L+TGA+  IG+ +A + A     + +   R R +   +A +   +G   A+A+ AD+
Sbjct: 10  RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRR-AVALQADL 68

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
           +   + +  V       G +  LV NA +
Sbjct: 69  ADEAEVRALVARASAALGPITLLVNNASL 97

Length = 258

>gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF---ALAIP 103
           GK ++I+G + GIGK + YE+A+    +        +       AE +   +   A A P
Sbjct: 8   GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEAN--KIAEDLEQKYGIKAKAYP 65

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNA 133
            ++ + E  K       E F R+D  ++NA
Sbjct: 66  LNILEPETYKELFKKIDEDFDRVDFFISNA 95

Length = 260

>gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 29/202 (14%)

Query: 47  GKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVAD---------QAELMG 95
            K+ L+TGAS  +GIG  +    A +   +                        + E+  
Sbjct: 5   KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES 64

Query: 96  SPFALA-IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA--GVVPMCLFEDYTDITKPAP 152
                  +  D+S+            E  G    L+ NA              ++T  A 
Sbjct: 65  YGVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTH-----TRLEELT--AE 117

Query: 153 AMDINFWGSAYGTY-----FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
            +D ++  +   T      FA  Y  +  G+II + S     P P    Y A+K A  A 
Sbjct: 118 QLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMPDELAYAATKGAIEAF 177

Query: 208 YETLRVEFGGDIGITI--VTPG 227
            ++L  E   + GIT+  V PG
Sbjct: 178 TKSLAPEL-AEKGITVNAVNPG 198

Length = 256

>gnl|CDD|180586 PRK06483, PRK06483, dihydromonapterin reductase; Provisional

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRER----QLREVADQAELMGSPFALAIPAD 105
           +LITGA   IG  LA+    +   +++  R        LR+            A  I AD
Sbjct: 5   ILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAG----------AQCIQAD 54

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNA 133
            S       F+D   +H   L  ++ NA
Sbjct: 55  FSTNAGIMAFIDELKQHTDGLRAIIHNA 82

Length = 236

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSK 108
           V+ITGASSG+G + A   A      V++A R+  +  + A    +    + + +  D+  
Sbjct: 6   VIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTI-MHLDLGS 64

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGV 135
           ++  + FV    E    LD LV NA V
Sbjct: 65  LDSVRQFVQQFRESGRPLDALVCNAAV 91

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 32/201 (15%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV----ARRERQLREVADQAELMGSPFA 99
            + GKVVLI G +  +G  +A + A + A+ V +    A  +    E     +  G+  A
Sbjct: 5   SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAK-A 63

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA-PAM-DIN 157
           +A  AD++     +   D     FGR D  +   G V   L +   +I++     M  +N
Sbjct: 64  VAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGKV---LKKPIVEISEAEYDEMFAVN 120

Query: 158 FWGSAYGTYFAIPYLKQT------KGKII-VVASAAGWLPPPRMSFYNASKAAKIALYET 210
               +   +F   ++K+        GKI+ +V S  G   P    FY+A   +K  +   
Sbjct: 121 ----SKSAFF---FIKEAGRHLNDNGKIVTLVTSLLGAFTP----FYSAYAGSKAPVEHF 169

Query: 211 LRV---EFGG-DIGITIVTPG 227
            R    EFG   I +T V PG
Sbjct: 170 TRAASKEFGARGISVTAVGPG 190

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	100.0
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
PRK08339	263	short chain dehydrogenase; Provisional	100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	100.0
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	100.0
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
KOG0725	270	consensus Reductases with broad range of substrate	100.0
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	100.0
PRK07063	260	short chain dehydrogenase; Provisional	100.0
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	100.0
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07062	265	short chain dehydrogenase; Provisional	100.0
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08589	272	short chain dehydrogenase; Validated	100.0
PRK05867	253	short chain dehydrogenase; Provisional	100.0
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07478	254	short chain dehydrogenase; Provisional	100.0
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	100.0
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	100.0
PRK06114	254	short chain dehydrogenase; Provisional	100.0
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	100.0
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	100.0
PRK08277	278	D-mannonate oxidoreductase; Provisional	100.0
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	100.0
PRK08265	261	short chain dehydrogenase; Provisional	100.0
PRK08085	254	gluconate 5-dehydrogenase; Provisional	100.0
PRK08303	305	short chain dehydrogenase; Provisional	100.0
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	100.0
PRK07791	286	short chain dehydrogenase; Provisional	100.0
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06398	258	aldose dehydrogenase; Validated	100.0
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	100.0
PRK08340	259	glucose-1-dehydrogenase; Provisional	100.0
PRK12747	252	short chain dehydrogenase; Provisional	100.0
PRK07035	252	short chain dehydrogenase; Provisional	100.0
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	100.0
PRK07523	255	gluconate 5-dehydrogenase; Provisional	100.0
PRK06172	253	short chain dehydrogenase; Provisional	100.0
PRK06125	259	short chain dehydrogenase; Provisional	100.0
PRK07097	265	gluconate 5-dehydrogenase; Provisional	100.0
PRK07985	294	oxidoreductase; Provisional	100.0
PRK07831	262	short chain dehydrogenase; Provisional	100.0
PLN02253	280	xanthoxin dehydrogenase	100.0
PRK08643	256	acetoin reductase; Validated	100.0
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	100.0
PRK05872	296	short chain dehydrogenase; Provisional	100.0
PRK06128	300	oxidoreductase; Provisional	100.0
PRK07856	252	short chain dehydrogenase; Provisional	100.0
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	100.0
PRK09242	257	tropinone reductase; Provisional	100.0
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08936	261	glucose-1-dehydrogenase; Provisional	100.0
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	100.0
PRK06484	520	short chain dehydrogenase; Validated	100.0
PRK06124	256	gluconate 5-dehydrogenase; Provisional	100.0
PRK08862	227	short chain dehydrogenase; Provisional	100.0
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	100.0
PRK05717	255	oxidoreductase; Validated	100.0
PRK06940	275	short chain dehydrogenase; Provisional	100.0
PRK06841	255	short chain dehydrogenase; Provisional	100.0
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	100.0
PRK07677	252	short chain dehydrogenase; Provisional	100.0
PRK06139	330	short chain dehydrogenase; Provisional	100.0
PRK07067	257	sorbitol dehydrogenase; Provisional	100.0
PRK08226	263	short chain dehydrogenase; Provisional	100.0
PRK07890	258	short chain dehydrogenase; Provisional	100.0
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	100.0
PRK08278	273	short chain dehydrogenase; Provisional	100.0
PRK06949	258	short chain dehydrogenase; Provisional	100.0
PRK12743	256	oxidoreductase; Provisional	100.0
PRK08628	258	short chain dehydrogenase; Provisional	100.0
PRK06483	236	dihydromonapterin reductase; Provisional	100.0
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK07814	263	short chain dehydrogenase; Provisional	100.0
PRK06523	260	short chain dehydrogenase; Provisional	100.0
PRK05599	246	hypothetical protein; Provisional	100.0
PRK07576	264	short chain dehydrogenase; Provisional	100.0
PRK06701	290	short chain dehydrogenase; Provisional	100.0
PRK05876	275	short chain dehydrogenase; Provisional	100.0
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	100.0
PRK06500	249	short chain dehydrogenase; Provisional	100.0
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	100.0
PRK08703	239	short chain dehydrogenase; Provisional	100.0
PLN02780	320	ketoreductase/ oxidoreductase	100.0
PRK12938	246	acetyacetyl-CoA reductase; Provisional	100.0
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	100.0
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK07109	334	short chain dehydrogenase; Provisional	100.0
PRK12937	245	short chain dehydrogenase; Provisional	100.0
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	100.0
TIGR02415	254	23BDH acetoin reductases. One member of this famil	100.0
PRK06484	520	short chain dehydrogenase; Validated	100.0
PRK12939	250	short chain dehydrogenase; Provisional	100.0
PRK12742	237	oxidoreductase; Provisional	100.0
PRK05884	223	short chain dehydrogenase; Provisional	100.0
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	100.0
PRK08213	259	gluconate 5-dehydrogenase; Provisional	100.0
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	100.0
PRK06138	252	short chain dehydrogenase; Provisional	100.0
PRK12744	257	short chain dehydrogenase; Provisional	100.0
PRK06182	273	short chain dehydrogenase; Validated	100.0
PRK07825	273	short chain dehydrogenase; Provisional	100.0
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	100.0
PRK09186	256	flagellin modification protein A; Provisional	100.0
PRK06057	255	short chain dehydrogenase; Provisional	100.0
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	100.0
PRK06123	248	short chain dehydrogenase; Provisional	100.0
PRK05866	293	short chain dehydrogenase; Provisional	100.0
PRK06947	248	glucose-1-dehydrogenase; Provisional	100.0
PRK05875	276	short chain dehydrogenase; Provisional	100.0
PRK07069	251	short chain dehydrogenase; Validated	100.0
PRK05854	313	short chain dehydrogenase; Provisional	100.0
PRK07024	257	short chain dehydrogenase; Provisional	100.0
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	100.0
PRK06198	260	short chain dehydrogenase; Provisional	100.0
PRK07832	272	short chain dehydrogenase; Provisional	100.0
PRK05855	582	short chain dehydrogenase; Validated	100.0
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	100.0
PRK06180	277	short chain dehydrogenase; Provisional	100.0
PRK07454	241	short chain dehydrogenase; Provisional	100.0
PRK05993	277	short chain dehydrogenase; Provisional	100.0
PRK07904	253	short chain dehydrogenase; Provisional	100.0
PRK12824	245	acetoacetyl-CoA reductase; Provisional	100.0
PRK08263	275	short chain dehydrogenase; Provisional	100.0
PRK06196	315	oxidoreductase; Provisional	100.0
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	100.0
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	100.0
PRK12746	254	short chain dehydrogenase; Provisional	100.0
PRK05650	270	short chain dehydrogenase; Provisional	100.0
PRK07774	250	short chain dehydrogenase; Provisional	100.0
PRK12935	247	acetoacetyl-CoA reductase; Provisional	100.0
PRK10538	248	malonic semialdehyde reductase; Provisional	100.0
PLN00015	308	protochlorophyllide reductase	100.0
PRK06194	287	hypothetical protein; Provisional	100.0
PRK09134	258	short chain dehydrogenase; Provisional	100.0
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	100.0
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	100.0
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK09072	263	short chain dehydrogenase; Provisional	100.0
PRK07060	245	short chain dehydrogenase; Provisional	100.0
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	100.0
PRK06924	251	short chain dehydrogenase; Provisional	100.0
PRK12827	249	short chain dehydrogenase; Provisional	100.0
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
PRK06914	280	short chain dehydrogenase; Provisional	100.0
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	100.0
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK08267	260	short chain dehydrogenase; Provisional	100.0
PRK06181	263	short chain dehydrogenase; Provisional	100.0
PRK08251	248	short chain dehydrogenase; Provisional	100.0
PRK06179	270	short chain dehydrogenase; Provisional	100.0
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	100.0
PRK06197	306	short chain dehydrogenase; Provisional	100.0
PRK09135	249	pteridine reductase; Provisional	100.0
PRK07074	257	short chain dehydrogenase; Provisional	100.0
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK07102	243	short chain dehydrogenase; Provisional	100.0
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	100.0
PRK05693	274	short chain dehydrogenase; Provisional	100.0
PRK07577	234	short chain dehydrogenase; Provisional	100.0
PRK07806	248	short chain dehydrogenase; Provisional	100.0
PRK12828	239	short chain dehydrogenase; Provisional	100.0
PRK07201	657	short chain dehydrogenase; Provisional	100.0
COG1028	251	FabG Dehydrogenases with different specificities (	100.0
PRK07775	274	short chain dehydrogenase; Provisional	100.0
PRK12829	264	short chain dehydrogenase; Provisional	100.0
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	100.0
PRK09009	235	C factor cell-cell signaling protein; Provisional	100.0
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	100.0
PRK08324	681	short chain dehydrogenase; Validated	100.0
KOG1208	314	consensus Dehydrogenases with different specificit	100.0
PRK07041	230	short chain dehydrogenase; Provisional	100.0
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.98
PRK07578	199	short chain dehydrogenase; Provisional	99.98
PRK06482	276	short chain dehydrogenase; Provisional	99.98
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.98
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.98
PRK07326	237	short chain dehydrogenase; Provisional	99.98
PRK07023	243	short chain dehydrogenase; Provisional	99.98
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.98
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.97
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.97
PRK06101	240	short chain dehydrogenase; Provisional	99.97
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.97
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.97
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.97
PRK08264	238	short chain dehydrogenase; Validated	99.97
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.97
PRK09291	257	short chain dehydrogenase; Provisional	99.97
PRK08177	225	short chain dehydrogenase; Provisional	99.97
PRK08017	256	oxidoreductase; Provisional	99.96
PRK12367	245	short chain dehydrogenase; Provisional	99.96
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.96
PRK06953	222	short chain dehydrogenase; Provisional	99.96
PRK08219	227	short chain dehydrogenase; Provisional	99.96
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.95
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.92
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.89
PLN03209	576	translocon at the inner envelope of chloroplast su	99.89
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	99.88
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.86
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.85
PRK06720	169	hypothetical protein; Provisional	99.83
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.83
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.83
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.81
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.79
PLN02583	297	cinnamoyl-CoA reductase	99.77
PLN02650	351	dihydroflavonol-4-reductase	99.77
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.76
PLN02214	342	cinnamoyl-CoA reductase	99.76
PLN00198	338	anthocyanidin reductase; Provisional	99.74
PLN02653	340	GDP-mannose 4,6-dehydratase	99.74
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.73
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.73
PLN02572	442	UDP-sulfoquinovose synthase	99.72
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.71
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.7
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.7
PLN02240	352	UDP-glucose 4-epimerase	99.68
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.68
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.66
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.65
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.65
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.64
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.64
PLN02686	367	cinnamoyl-CoA reductase	99.63
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.63
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.61
PLN02427	386	UDP-apiose/xylose synthase	99.61
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.59
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.58
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.57
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.56
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.54
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.53
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.5
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	99.49
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.47
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.45
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.45
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.44
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.43
PLN02260	668	probable rhamnose biosynthetic enzyme	99.43
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.42
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.41
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.4
PLN02206	442	UDP-glucuronate decarboxylase	99.39
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.38
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.34
CHL00194	317	ycf39 Ycf39; Provisional	99.34
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.33
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.33
PRK07201	657	short chain dehydrogenase; Provisional	99.28
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	99.26
PLN02996	491	fatty acyl-CoA reductase	99.26
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.18
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.17
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.17
PLN02778	298	3,5-epimerase/4-reductase	99.1
PRK05865	854	hypothetical protein; Provisional	99.09
PRK08309	177	short chain dehydrogenase; Provisional	99.07
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.06
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.04
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.01
PLN02503	605	fatty acyl-CoA reductase 2	98.99
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.98
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.93
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.92
PLN02260	668	probable rhamnose biosynthetic enzyme	98.88
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	98.87
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.87
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.86
PLN00016	378	RNA-binding protein; Provisional	98.84
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.76
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	98.74
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.69
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.68
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.68
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.61
PRK12320	699	hypothetical protein; Provisional	98.57
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.48
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	98.45
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	98.4
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.34
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	98.32
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	98.29
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.26
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.22
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.16
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.05
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.02
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.99
PRK14982	340	acyl-ACP reductase; Provisional	97.94
PRK09620	229	hypothetical protein; Provisional	97.91
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.8
COG2910	211	Putative NADH-flavin reductase [General function p	97.8
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	97.78
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	97.75
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	97.72
PLN00106	323	malate dehydrogenase	97.68
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.67
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.59
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.58
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.56
PTZ00325	321	malate dehydrogenase; Provisional	97.41
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.38
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	97.37
PRK06849	389	hypothetical protein; Provisional	97.25
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	97.23
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.16
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.15
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.13
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.12
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.11
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.09
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.08
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.05
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.03
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.01
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.99
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.96
PRK14968	188	putative methyltransferase; Provisional	96.96
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.94
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.89
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.86
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.86
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.79
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.79
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.76
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.75
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.72
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.7
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.66
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.65
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.65
KOG2774	366	consensus NAD dependent epimerase [General functio	96.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.59
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	96.57
COG3268	382	Uncharacterized conserved protein [Function unknow	96.56
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.55
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.54
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.53
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.51
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.51
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.48
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.46
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.43
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	96.43
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.39
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.38
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.38
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.37
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.35
KOG4288	283	consensus Predicted oxidoreductase [General functi	96.33
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.27
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.26
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.22
PRK05086	312	malate dehydrogenase; Provisional	96.2
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.18
PRK04148	134	hypothetical protein; Provisional	96.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.17
PLN02602	350	lactate dehydrogenase	96.15
PRK08223	287	hypothetical protein; Validated	96.12
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.11
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.1
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.09
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.08
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.04
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.03
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.02
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.01
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	95.99
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.99
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	95.94
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.93
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.93
PRK09496	453	trkA potassium transporter peripheral membrane com	95.89
COG3007	398	Uncharacterized paraquat-inducible protein B [Func	95.8
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.77
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.76
PLN00203	519	glutamyl-tRNA reductase	95.74
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.73
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.66
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.63
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	95.6
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.57
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	95.55
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.49
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.47
PRK10669	558	putative cation:proton antiport protein; Provision	95.46
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.44
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.43
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.41
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	95.38
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	95.37
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.37
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.35
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.34
COG2130	340	Putative NADP-dependent oxidoreductases [General f	95.31
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.29
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.25
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.23
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.22
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.22
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.19
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	95.18
PRK09496	453	trkA potassium transporter peripheral membrane com	95.18
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	95.16
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.08
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	95.08
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.08
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	95.07
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.06
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	94.99
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.99
PRK14851	679	hypothetical protein; Provisional	94.96
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.95
PTZ00354	334	alcohol dehydrogenase; Provisional	94.94
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.9
PLN02740	381	Alcohol dehydrogenase-like	94.89
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	94.89
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	94.86
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	94.83
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	94.82
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.82
PRK10537	393	voltage-gated potassium channel; Provisional	94.81
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.74
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.71
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.71
PRK08655	437	prephenate dehydrogenase; Provisional	94.69
PLN00112	444	malate dehydrogenase (NADP); Provisional	94.63
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	94.58
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	94.56
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.55
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.54
PTZ00117	319	malate dehydrogenase; Provisional	94.53
PRK07411	390	hypothetical protein; Validated	94.52
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.48
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	94.46
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.45
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	94.44
PRK14967	223	putative methyltransferase; Provisional	94.42
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	94.42
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.41
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.39
PRK08328	231	hypothetical protein; Provisional	94.39
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.36
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	94.34
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.3
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.29
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.29
PRK13771	334	putative alcohol dehydrogenase; Provisional	94.28
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	94.19
PRK14852	989	hypothetical protein; Provisional	94.13
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.13
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.12
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	94.1
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.1
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	94.09
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.08
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.08
PRK12480	330	D-lactate dehydrogenase; Provisional	94.07
PLN02827	378	Alcohol dehydrogenase-like	94.05
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	94.04
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.04
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.01
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.98
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	93.98
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.98
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.96
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.94
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.94
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.92
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	93.88
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.88
PRK06223	307	malate dehydrogenase; Reviewed	93.87
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.8
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	93.79
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.73
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.73
PRK13403	335	ketol-acid reductoisomerase; Provisional	93.67

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-46  Score=294.90  Aligned_cols=231  Identities=25%  Similarity=0.319  Sum_probs=204.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++.|+++||||++|||++++..|+++|++|++.+++.+..++++..+...+  ....+.||+++.++++..+++..+.
T Consensus        10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~--~h~aF~~DVS~a~~v~~~l~e~~k~   87 (256)
T KOG1200|consen   10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYG--DHSAFSCDVSKAHDVQNTLEEMEKS   87 (256)
T ss_pred             HHHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCC--ccceeeeccCcHHHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999998888877775543  4667899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh--cCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK--QTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~--~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +|+++++|||||+.....+..... ++|+..+.+|+.+.++.+|++...|.  ++. ++|||+||..|..+.-++..|++
T Consensus        88 ~g~psvlVncAGItrD~~Llrmkq-~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAA  166 (256)
T KOG1200|consen   88 LGTPSVLVNCAGITRDGLLLRMKQ-EQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAA  166 (256)
T ss_pred             cCCCcEEEEcCccccccceeeccH-HHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhh
Confidence            999999999999998777666544 89999999999999999999999743  222 59999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~  275 (287)
                      +|+++.+|+|++|+|++++ ||||+|.||++.|||+.++          ++...+++....|   ++.+||||+.++||+
T Consensus       167 sK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~m----------p~~v~~ki~~~iPmgr~G~~EevA~~V~fLA  236 (256)
T KOG1200|consen  167 SKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAM----------PPKVLDKILGMIPMGRLGEAEEVANLVLFLA  236 (256)
T ss_pred             hcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhc----------CHHHHHHHHccCCccccCCHHHHHHHHHHHh
Confidence            9999999999999999988 9999999999999999864          3455555555555   557999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      |+.++||||+.
T Consensus       237 S~~ssYiTG~t  247 (256)
T KOG1200|consen  237 SDASSYITGTT  247 (256)
T ss_pred             cccccccccee
Confidence            99999999985

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=2.6e-44  Score=296.49  Aligned_cols=227  Identities=35%  Similarity=0.450  Sum_probs=199.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++|+++|||||||||.++|++|++.|++|++++|+.++++++.+++..   ..+.++..|++|.++++++++.+.+++
T Consensus         3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~   79 (246)
T COG4221           3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEF   79 (246)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999865   368999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|+||||||.....+..+ .+.++|++|+++|+.|.++.+++++|.|.+++ |.|||+||.+|.+++|+...|+++|+
T Consensus        80 g~iDiLvNNAGl~~g~~~~~-~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~  158 (246)
T COG4221          80 GRIDILVNNAGLALGDPLDE-ADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKA  158 (246)
T ss_pred             CcccEEEecCCCCcCChhhh-CCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHH
Confidence            99999999999987755555 46699999999999999999999999998775 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++.+|++.|+.|+... |||..|.||.+.|..........      +++..+.........+|||||++++|.++.+..
T Consensus       159 aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g------~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~  231 (246)
T COG4221         159 AVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEG------DDERADKVYKGGTALTPEDIAEAVLFAATQPQH  231 (246)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCc------hhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCc
Confidence            9999999999999877 99999999999776543321111      234444444555566899999999999997754

>PRK08339 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-44  Score=310.48  Aligned_cols=244  Identities=22%  Similarity=0.256  Sum_probs=202.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++.++.+|++|+++++++++++. 
T Consensus         3 ~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-   81 (263)
T PRK08339          3 KIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-   81 (263)
T ss_pred             ccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-
Confidence            3567899999999999999999999999999999999999988888877765434468899999999999999999986 


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||+|.....++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.+++..|+++
T Consensus        82 ~~g~iD~lv~nag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~as  160 (263)
T PRK08339         82 NIGEPDIFFFSTGGPKPGYFME-MSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVV  160 (263)
T ss_pred             hhCCCcEEEECCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHH
Confidence            5899999999999876555544 35588999999999999999999999997655 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      |+|+++|++.++.|++++ ||||+|+||+++|++.......... .....++..+...   +..++.+|||||++++||+
T Consensus       161 Kaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~  240 (263)
T PRK08339        161 RISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLA  240 (263)
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHh
Confidence            999999999999999988 9999999999999986532111000 0001122223333   3344567999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       241 s~~~~~itG~~~  252 (263)
T PRK08339        241 SDLGSYINGAMI  252 (263)
T ss_pred             cchhcCccCceE
Confidence            999999999863

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=100.00  E-value=2.1e-43  Score=299.10  Aligned_cols=227  Identities=34%  Similarity=0.432  Sum_probs=202.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++++|||||+|||+++|++|+++|++|++++|+.++++++.++++...+..+.++++|+++.++++++.+++.++.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999988777789999999999999999999999998


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +.||++|||||+...+++.+. ++++.++++++|+.+...++++++|.|.+++ |.|||++|.+|..|.|..+.|++||+
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~-~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa  161 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLEL-SLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKA  161 (265)
T ss_pred             CcccEEEECCCcCCccchhhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHHH
Confidence            999999999999999988774 6789999999999999999999999997765 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ++.+|+++|+.|+.+. |+|.+++||++.|++.+......           ........+.+||++|+.++..+....+.
T Consensus       162 ~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~~-----------~~~~~~~~~~~~~~va~~~~~~l~~~k~~  230 (265)
T COG0300         162 FVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDV-----------YLLSPGELVLSPEDVAEAALKALEKGKRE  230 (265)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEecCcccccccccccccc-----------ccccchhhccCHHHHHHHHHHHHhcCCce
Confidence            9999999999999888 99999999999999875211100           00112334668999999999999876554


Q ss_pred             c
Q 042560          282 L  282 (287)
Q Consensus       282 i  282 (287)
                      +
T Consensus       231 i  231 (265)
T COG0300         231 I  231 (265)
T ss_pred             E
Confidence            4

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1e-42  Score=299.94  Aligned_cols=231  Identities=16%  Similarity=0.139  Sum_probs=193.1

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++|+++||||+  +|||+++|++|+++|++|++++|+. +.++..+++.   ..++..+++|++|+++++++++++.
T Consensus         3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~   78 (252)
T PRK06079          3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV---DEEDLLVECDVASDESIERAFATIK   78 (252)
T ss_pred             cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHHH
Confidence            34789999999999  7999999999999999999999983 3443333332   2357889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||....    .++.+ .+.++|++.+++|+.+++.+++.++|.|++ +|+||++||..+..+.+++..
T Consensus        79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~-~~~~~~~~~~~in~~~~~~l~~~~~~~~~~-~g~Iv~iss~~~~~~~~~~~~  156 (252)
T PRK06079         79 ERVGKIDGIVHAIAYAKKEELGGNVTD-TSRDGYALAQDISAYSLIAVAKYARPLLNP-GASIVTLTYFGSERAIPNYNV  156 (252)
T ss_pred             HHhCCCCEEEEcccccccccccCCccc-CCHHHHHHHhCcccHHHHHHHHHHHHhccc-CceEEEEeccCccccCCcchh
Confidence            999999999999998653    33333 345789999999999999999999999975 689999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~  272 (287)
                      |+++|+|+++|+++++.|++++ |+||+|+||+++|++......        .++..+   ...+..++.+|||||+++.
T Consensus       157 Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--------~~~~~~~~~~~~p~~r~~~pedva~~~~  228 (252)
T PRK06079        157 MGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--------HKDLLKESDSRTVDGVGVTIEEVGNTAA  228 (252)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--------hHHHHHHHHhcCcccCCCCHHHHHHHHH
Confidence            9999999999999999999987 999999999999997643211        112222   2234455678999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||++++++++||+.+
T Consensus       229 ~l~s~~~~~itG~~i  243 (252)
T PRK06079        229 FLLSDLSTGVTGDII  243 (252)
T ss_pred             HHhCcccccccccEE
Confidence            999999999999863

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-42  Score=298.04  Aligned_cols=236  Identities=24%  Similarity=0.304  Sum_probs=196.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||+++|++|+++|++|++++|+..  ++..++++..+ .++.++.+|++|+++++++++++.+.
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12481          4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG-RKFHFITADLIQQKDIDSIVSQAVEV   80 (251)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999988643  33334444333 46889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.++...|++|
T Consensus        81 ~g~iD~lv~~ag~~~~~~~~~~-~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~as  159 (251)
T PRK12481         81 MGHIDILINNAGIIRRQDLLEF-GNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTAS  159 (251)
T ss_pred             cCCCCEEEECCCcCCCCCcccC-CHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCCCCCcchHHH
Confidence            9999999999998766555443 457899999999999999999999998654  3899999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+|++++++.++.|++++ |+||+|+||+++|++.......    ....++. ....+..++++|||||++++||+++.+
T Consensus       160 K~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~----~~~~~~~-~~~~p~~~~~~peeva~~~~~L~s~~~  234 (251)
T PRK12481        160 KSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRAD----TARNEAI-LERIPASRWGTPDDLAGPAIFLSSSAS  234 (251)
T ss_pred             HHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccC----hHHHHHH-HhcCCCCCCcCHHHHHHHHHHHhCccc
Confidence            999999999999999887 9999999999999987643110    0001111 122344456689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       235 ~~~~G~~i  242 (251)
T PRK12481        235 DYVTGYTL  242 (251)
T ss_pred             cCcCCceE
Confidence            99999864

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.1e-42  Score=302.82  Aligned_cols=235  Identities=18%  Similarity=0.203  Sum_probs=190.2

Q ss_pred             CCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||++  |||+++|++|+++|++|++++|+....+...+..+..+.  ...+++|++|.++++++++++.+
T Consensus         4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~~~~~   81 (271)
T PRK06505          4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFEALEK   81 (271)
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHHHHHH
Confidence            36899999999996  999999999999999999999986443333222222222  35789999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++|++|++|||||....    .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.|++..|
T Consensus        82 ~~g~iD~lVnnAG~~~~~~~~~~~~~-~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~-~G~Iv~isS~~~~~~~~~~~~Y  159 (271)
T PRK06505         82 KWGKLDFVVHAIGFSDKNELKGRYAD-TTRENFSRTMVISCFSFTEIAKRAAKLMPD-GGSMLTLTYGGSTRVMPNYNVM  159 (271)
T ss_pred             HhCCCCEEEECCccCCCccccCChhh-cCHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CceEEEEcCCCccccCCccchh
Confidence            99999999999998653    22333 345889999999999999999999999974 5899999999999899999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+.+|+++++.|++++ ||||+|+||+++|++..... ..    ....+......+..++++|||||++++||++
T Consensus       160 ~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~-~~----~~~~~~~~~~~p~~r~~~peeva~~~~fL~s  234 (271)
T PRK06505        160 GVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIG-DA----RAIFSYQQRNSPLRRTVTIDEVGGSALYLLS  234 (271)
T ss_pred             hhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCc-ch----HHHHHHHhhcCCccccCCHHHHHHHHHHHhC
Confidence            999999999999999999988 99999999999999754321 00    0001111122233445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       235 ~~~~~itG~~i  245 (271)
T PRK06505        235 DLSSGVTGEIH  245 (271)
T ss_pred             ccccccCceEE
Confidence            99999999863

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=100.00  E-value=2.2e-42  Score=298.60  Aligned_cols=242  Identities=33%  Similarity=0.420  Sum_probs=201.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +..++++|+++|||+++|||+++|++|++.|++|++++|+.+.+++..+.+...+  +.++..+.+|+++++++++++++
T Consensus         2 ~~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~   81 (270)
T KOG0725|consen    2 SGGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF   81 (270)
T ss_pred             CCccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999998888876543  34799999999999999999999


Q ss_pred             HHHh-cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhh-HHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCC-
Q 042560          119 TMEH-FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG-SAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRM-  194 (287)
Q Consensus       119 ~~~~-~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~-  194 (287)
                      ..++ +|++|++|||||.........+.+.++|++++++|+.+ .+.+.+.+.|.++++ +|.|+++||..+..+.+.. 
T Consensus        82 ~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~  161 (270)
T KOG0725|consen   82 AVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSG  161 (270)
T ss_pred             HHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc
Confidence            9999 79999999999999876433335668999999999995 666677777777764 4899999999998876666 


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh-----hhcCCCCCCHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV-----QISLLPVQPTEECA  268 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~evA  268 (287)
                      .+|+++|+|+++|+|.+|.|+.++ ||||+|+||++.|++ .......    ...++..+.     ..+..++++|+|||
T Consensus       162 ~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~-~~~~~~~----~~~~~~~~~~~~~~~~p~gr~g~~~eva  236 (270)
T KOG0725|consen  162 VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL-RAAGLDD----GEMEEFKEATDSKGAVPLGRVGTPEEVA  236 (270)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc-ccccccc----chhhHHhhhhccccccccCCccCHHHHH
Confidence            799999999999999999999998 999999999999998 2111111    011233332     33455666899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +.++||++++++|+||+.+
T Consensus       237 ~~~~fla~~~asyitG~~i  255 (270)
T KOG0725|consen  237 EAAAFLASDDASYITGQTI  255 (270)
T ss_pred             HhHHhhcCcccccccCCEE
Confidence            9999999999889999864

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.3e-42  Score=302.67  Aligned_cols=236  Identities=19%  Similarity=0.182  Sum_probs=190.0

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      |.+++|+++||||+  +|||+++|++|+++|++|++++|+.+. ++..+++....+.. ..+++|++|.++++++++++.
T Consensus         1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~   78 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-KKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLK   78 (274)
T ss_pred             CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-HHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHH
Confidence            45689999999997  899999999999999999999998532 22233332221223 578899999999999999999


Q ss_pred             HhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||+...    .++.+ .+.++|++++++|+.+++.+++.++|.|++ +|+||++||..+..+.|++..
T Consensus        79 ~~~g~iDilVnnAG~~~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~-~g~Iv~isS~~~~~~~~~~~~  156 (274)
T PRK08415         79 KDLGKIDFIVHSVAFAPKEALEGSFLE-TSKEAFNIAMEISVYSLIELTRALLPLLND-GASVLTLSYLGGVKYVPHYNV  156 (274)
T ss_pred             HHcCCCCEEEECCccCccccccccccc-CCHHHHHHHhhhhhHHHHHHHHHHHHHhcc-CCcEEEEecCCCccCCCcchh
Confidence            999999999999998643    23333 345789999999999999999999999975 589999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+.+|+++++.|++++ |+||+|+||+++|++..... ...    ...+..+...+..++.+|||||++++||+
T Consensus       157 Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~-~~~----~~~~~~~~~~pl~r~~~pedva~~v~fL~  231 (274)
T PRK08415        157 MGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIG-DFR----MILKWNEINAPLKKNVSIEEVGNSGMYLL  231 (274)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccc-hhh----HHhhhhhhhCchhccCCHHHHHHHHHHHh
Confidence            9999999999999999999987 99999999999998754221 000    00011111223344568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       232 s~~~~~itG~~i  243 (274)
T PRK08415        232 SDLSSGVTGEIH  243 (274)
T ss_pred             hhhhhcccccEE
Confidence            999999999853

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.6e-42  Score=300.20  Aligned_cols=237  Identities=18%  Similarity=0.117  Sum_probs=191.4

Q ss_pred             CCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||  ++|||+++|++|+++|++|++++|+.. .++..+++....+ ....+++|++|+++++++++++.+
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~   80 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAAELD-SELVFRCDVASDDEINQVFADLGK   80 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHhccC-CceEEECCCCCHHHHHHHHHHHHH
Confidence            368999999997  679999999999999999999888643 3344444433322 356789999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCC----CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCL----FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~----~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +++++|++|||||+.....    ..+..+.++|++++++|+.+++.++++++|.|++++|+||++||..+..+.|++..|
T Consensus        81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~~~~Y  160 (261)
T PRK08690         81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM  160 (261)
T ss_pred             HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCCcccc
Confidence            9999999999999875421    112234467889999999999999999999997767899999999999899999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+.+|++.++.|++++ ||||+|+||+++|++.......     ....+......+..++++|||||++++||++
T Consensus       161 ~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~-----~~~~~~~~~~~p~~r~~~peevA~~v~~l~s  235 (261)
T PRK08690        161 GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADF-----GKLLGHVAAHNPLRRNVTIEEVGNTAAFLLS  235 (261)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCch-----HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999988 9999999999999976432100     0001111222344456689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       236 ~~~~~~tG~~i  246 (261)
T PRK08690        236 DLSSGITGEIT  246 (261)
T ss_pred             cccCCcceeEE
Confidence            99999999853

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.2e-42  Score=296.62  Aligned_cols=201  Identities=48%  Similarity=0.683  Sum_probs=182.5

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCe-eEEEeecCCCHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~  117 (287)
                      ....+++.||+++|||||+|||.++|++|+++|++++++.|+.++++...++++..+... ++++++|++|.++++++++
T Consensus         4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~   83 (282)
T KOG1205|consen    4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVE   83 (282)
T ss_pred             cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999988887766555 9999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++.+++|++|+||||||+.. ..+.+..+.++.+++|++|++|+++++++++|.|++++ |+||++||.+|..+.|..+.
T Consensus        84 ~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~  162 (282)
T KOG1205|consen   84 WAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSI  162 (282)
T ss_pred             HHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccc
Confidence            99999999999999999998 55555566678899999999999999999999999887 99999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC---eEEEEEeCCcccCCCcCCcccCc
Q 042560          197 YNASKAAKIALYETLRVEFGGD---IGITIVTPGLIESEITGGKFLNK  241 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~---i~v~~i~PG~v~t~~~~~~~~~~  241 (287)
                      |++||+|+.+|..+|+.|+.+.   |++ .|+||+|+|++....+...
T Consensus       163 Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~~~~~  209 (282)
T KOG1205|consen  163 YSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKELLGE  209 (282)
T ss_pred             cchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchhhccc
Confidence            9999999999999999999874   666 8999999999876544333

>PRK07063 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-42  Score=297.13  Aligned_cols=242  Identities=24%  Similarity=0.302  Sum_probs=203.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++... .+.++.++++|++|+++++++++++.++
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999888888777652 2346889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....+..+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++|
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAM-TDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAK  162 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCchHHHHHH
Confidence            9999999999998765544443 4478999999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|++++++.++.|++++ ||||+|+||+++|++....+........ ..+......+..++++|||+|+.++||+++.++
T Consensus       163 aa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~va~~~~fl~s~~~~  241 (260)
T PRK07063        163 HGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAA-ARAETLALQPMKRIGRPEEVAMTAVFLASDEAP  241 (260)
T ss_pred             HHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHH-HHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccc
Confidence            99999999999999987 9999999999999987653322111000 011112223445567899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+||+.+
T Consensus       242 ~itG~~i  248 (260)
T PRK07063        242 FINATCI  248 (260)
T ss_pred             ccCCcEE
Confidence            9999863

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=100.00  E-value=5.9e-42  Score=296.12  Aligned_cols=237  Identities=19%  Similarity=0.156  Sum_probs=193.6

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChh--HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRER--QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+.+  +.++..+++.... .++.++++|++|++++++++++
T Consensus         2 ~~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~   80 (258)
T PRK07370          2 LDLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL-NPSLFLPCDVQDDAQIEETFET   80 (258)
T ss_pred             cccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc-CcceEeecCcCCHHHHHHHHHH
Confidence            45789999999986  89999999999999999998876543  3344455554433 2467889999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      +.++++++|++|||||+...    .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.|++
T Consensus        81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~-~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~-~g~Iv~isS~~~~~~~~~~  158 (258)
T PRK07370         81 IKQKWGKLDILVHCLAFAGKEELIGDFSA-TSREGFARALEISAYSLAPLCKAAKPLMSE-GGSIVTLTYLGGVRAIPNY  158 (258)
T ss_pred             HHHHcCCCCEEEEcccccCcccccCcchh-hCHHHHHHHheeeeHHHHHHHHHHHHHHhh-CCeEEEEeccccccCCccc
Confidence            99999999999999998642    23333 345789999999999999999999999975 5899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ..|+++|+|+++|+++++.|++++ |+||+|+||+++|++..... ..+    ...+..+...+..++++|||||+.++|
T Consensus       159 ~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~-~~~----~~~~~~~~~~p~~r~~~~~dva~~~~f  233 (258)
T PRK07370        159 NVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVG-GIL----DMIHHVEEKAPLRRTVTQTEVGNTAAF  233 (258)
T ss_pred             chhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccc-cch----hhhhhhhhcCCcCcCCCHHHHHHHHHH
Confidence            999999999999999999999988 99999999999999764321 100    001111222344456689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++++||+.+
T Consensus       234 l~s~~~~~~tG~~i  247 (258)
T PRK07370        234 LLSDLASGITGQTI  247 (258)
T ss_pred             HhChhhccccCcEE
Confidence            99999999999863

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=6.9e-42  Score=295.69  Aligned_cols=239  Identities=18%  Similarity=0.163  Sum_probs=193.0

Q ss_pred             cCCCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .+.++++||+++||||+  +|||+++|++|+++|++|++++|+.+..+. .+++....+ ....+++|++|+++++++++
T Consensus         3 ~~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~-~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~   80 (258)
T PRK07533          3 QPLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPY-VEPLAEELD-APIFLPLDVREPGQLEAVFA   80 (258)
T ss_pred             CcccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHH-HHHHHHhhc-cceEEecCcCCHHHHHHHHH
Confidence            35677899999999998  599999999999999999999998654322 222222111 35678999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC
Q 042560          118 VTMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR  193 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~  193 (287)
                      ++.+++|++|++|||||....    .++.+ .+.++|++++++|+.+++.+++.++|.|++ +|+||++||..+..+.++
T Consensus        81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~-~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~-~g~Ii~iss~~~~~~~~~  158 (258)
T PRK07533         81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVD-CSREGFALAMDVSCHSFIRMARLAEPLMTN-GGSLLTMSYYGAEKVVEN  158 (258)
T ss_pred             HHHHHcCCCCEEEEcCccCCcccccCCccc-CCHHHHHHHHhhhhHHHHHHHHHHHHHhcc-CCEEEEEeccccccCCcc
Confidence            999999999999999998653    22333 355789999999999999999999999964 689999999999888899


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      +..|+++|+|+++|++.++.|++++ |+||+|+||+++|++.......    ....++ .....+..++.+|||+|+.++
T Consensus       159 ~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~----~~~~~~-~~~~~p~~r~~~p~dva~~~~  233 (258)
T PRK07533        159 YNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDF----DALLED-AAERAPLRRLVDIDDVGAVAA  233 (258)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCc----HHHHHH-HHhcCCcCCCCCHHHHHHHHH
Confidence            9999999999999999999999987 9999999999999986532100    000111 112223445568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||++++++++||+.+
T Consensus       234 ~L~s~~~~~itG~~i  248 (258)
T PRK07533        234 FLASDAARRLTGNTL  248 (258)
T ss_pred             HHhChhhccccCcEE
Confidence            999999999999864

>PRK07062 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-41  Score=295.42  Aligned_cols=245  Identities=22%  Similarity=0.273  Sum_probs=204.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.... +.++..+.+|++|.++++++++++.
T Consensus         3 ~~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T PRK07062          3 QIQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE   82 (265)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999988888777775543 3468899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|++
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~a  161 (265)
T PRK07062         83 ARFGGVDMLVNNAGQGRVSTFADT-TDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSA  161 (265)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCchHhHH
Confidence            999999999999998765555443 4478999999999999999999999998754 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh-----hhhcCCCCCCHHHHHHHHHH
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD-----VQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~evA~~i~~  273 (287)
                      +|+|+++++++++.|+.++ |+||+|+||+++|++....+..........++..+     ...+..++.+|||+|+++++
T Consensus       162 sKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~  241 (265)
T PRK07062        162 ARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFF  241 (265)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHH
Confidence            9999999999999999887 99999999999999865432211110000111111     22234456689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |+++.++|+||+.+
T Consensus       242 L~s~~~~~~tG~~i  255 (265)
T PRK07062        242 LASPLSSYTTGSHI  255 (265)
T ss_pred             HhCchhcccccceE
Confidence            99999999999863

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=6.4e-42  Score=296.25  Aligned_cols=232  Identities=17%  Similarity=0.145  Sum_probs=189.8

Q ss_pred             CCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||++  |||+++|++|+++|++|++++|+. ..++..+++....+. ...+++|++|+++++++++++.+
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~~   82 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGC-NFVSELDVTNPKSISNLFDDIKE   82 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCC-ceEEEccCCCHHHHHHHHHHHHH
Confidence            45799999999997  999999999999999999999874 334444444333222 34678999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++|++|++|||+|....    .++.+ .+.++|++.+++|+.+++.+++.+.|.|++ +|+||++||..+..+.+++..|
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~-~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~-~G~Iv~isS~~~~~~~~~~~~Y  160 (260)
T PRK06603         83 KWGSFDFLLHGMAFADKNELKGRYVD-TSLENFHNSLHISCYSLLELSRSAEALMHD-GGSIVTLTYYGAEKVIPNYNVM  160 (260)
T ss_pred             HcCCccEEEEccccCCcccccCcccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CceEEEEecCccccCCCcccch
Confidence            99999999999997642    22333 355789999999999999999999999964 6899999999999888999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~  273 (287)
                      ++||+|+++|+++++.|++++ |+||+|+||+++|++.....   +     .++..+.   ..+..++++|||+|++++|
T Consensus       161 ~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~---~-----~~~~~~~~~~~~p~~r~~~pedva~~~~~  232 (260)
T PRK06603        161 GVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIG---D-----FSTMLKSHAATAPLKRNTTQEDVGGAAVY  232 (260)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCC---C-----cHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            999999999999999999988 99999999999999754321   0     1111222   2233445679999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       233 L~s~~~~~itG~~i  246 (260)
T PRK06603        233 LFSELSKGVTGEIH  246 (260)
T ss_pred             HhCcccccCcceEE
Confidence            99999999999853

>PRK08589 short chain dehydrogenase; Validated

Probab=100.00  E-value=1e-41  Score=296.90  Aligned_cols=239  Identities=28%  Similarity=0.355  Sum_probs=199.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+ +.+++..+++...+ .++..+.+|++++++++++++++.+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999 77777777775543 368899999999999999999999999


Q ss_pred             CCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.... .+..+ .+.+.|++++++|+.+++.+++.++|.|++++|+||++||..+..+.++...|+++|+
T Consensus        81 g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  159 (272)
T PRK08589         81 GRVDVLFNNAGVDNAAGRIHE-YPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLYRSGYNAAKG  159 (272)
T ss_pred             CCcCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCCCCCchHHHHHH
Confidence            999999999998653 33333 3457899999999999999999999999877799999999999999899999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++........+...  .+...+   ...+..++.+|+|+|+.+++|+++.
T Consensus       160 al~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~  237 (272)
T PRK08589        160 AVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEA--GKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDD  237 (272)
T ss_pred             HHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhH--HHHHhhhhhccCCCCCCcCHHHHHHHHHHHcCch
Confidence            9999999999999887 999999999999998765322111000  011111   1223344568999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       238 ~~~~~G~~i  246 (272)
T PRK08589        238 SSFITGETI  246 (272)
T ss_pred             hcCcCCCEE
Confidence            999999863

>PRK05867 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-41  Score=293.30  Aligned_cols=236  Identities=29%  Similarity=0.371  Sum_probs=199.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++..+.+|++|+++++++++++.+
T Consensus         4 ~~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T PRK05867          4 LFDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTA   82 (253)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999998888887776654 3688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCC-C-CChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPP-P-RMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~-~-~~~~Y  197 (287)
                      +++++|++|||+|.....++.+. +.++|++++++|+.+++.+++++.|.|.++  +|+||++||..+..+. + +...|
T Consensus        83 ~~g~id~lv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y  161 (253)
T PRK05867         83 ELGGIDIAVCNAGIITVTPMLDM-PLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHY  161 (253)
T ss_pred             HhCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccch
Confidence            99999999999998766555443 457899999999999999999999998664  3799999998876432 3 45789


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+++++++++.|++++ |+||+|+||+++|++.....        ...+......+..++.+|+|||++++||++
T Consensus       162 ~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~--------~~~~~~~~~~~~~r~~~p~~va~~~~~L~s  233 (253)
T PRK05867        162 CASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYT--------EYQPLWEPKIPLGRLGRPEELAGLYLYLAS  233 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccch--------HHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            999999999999999999987 99999999999999865321        011112222344456689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++++||+.+
T Consensus       234 ~~~~~~tG~~i  244 (253)
T PRK05867        234 EASSYMTGSDI  244 (253)
T ss_pred             cccCCcCCCeE
Confidence            99999999864

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=9.6e-42  Score=294.65  Aligned_cols=235  Identities=20%  Similarity=0.197  Sum_probs=191.2

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCCh---hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRE---RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ++++||+++||||+  +|||+++|++|+++|++|++++|+.   +.++++.+++.   +.++..+++|++|+++++++++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~   79 (257)
T PRK08594          3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE---GQESLLLPCDVTSDEEITACFE   79 (257)
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC---CCceEEEecCCCCHHHHHHHHH
Confidence            45789999999997  8999999999999999999998753   33444433331   3468889999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC
Q 042560          118 VTMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR  193 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~  193 (287)
                      ++.+++|++|++|||||+...    .++.+ .+.++|.+.+++|+.+++.+++.++|.|++ +|+||++||..+..+.++
T Consensus        80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~g~Iv~isS~~~~~~~~~  157 (257)
T PRK08594         80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLE-TSRDGFLLAQNISAYSLTAVAREAKKLMTE-GGSIVTLTYLGGERVVQN  157 (257)
T ss_pred             HHHHhCCCccEEEECcccCCCCcCCCcccc-CCHHHHHHHHhhhHHHHHHHHHHHHHhccc-CceEEEEcccCCccCCCC
Confidence            999999999999999997642    22223 345778899999999999999999999975 689999999999999999


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      +..|+++|+|+++|+++++.|++++ ||||+|+||+++|++..... ..+   ...++ .....+..++.+|||+|+.++
T Consensus       158 ~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~-~~~---~~~~~-~~~~~p~~r~~~p~~va~~~~  232 (257)
T PRK08594        158 YNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVG-GFN---SILKE-IEERAPLRRTTTQEEVGDTAA  232 (257)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhc-ccc---HHHHH-HhhcCCccccCCHHHHHHHHH
Confidence            9999999999999999999999987 99999999999999754321 000   00111 112223445678999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||++++++++||+.+
T Consensus       233 ~l~s~~~~~~tG~~~  247 (257)
T PRK08594        233 FLFSDLSRGVTGENI  247 (257)
T ss_pred             HHcCcccccccceEE
Confidence            999999999999853

>PRK07478 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-41  Score=292.26  Aligned_cols=238  Identities=27%  Similarity=0.352  Sum_probs=201.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.++++++++++.++
T Consensus         2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999998888887776654 35888999999999999999999999


Q ss_pred             cCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhhhh
Q 042560          123 FGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFYNA  199 (287)
Q Consensus       123 ~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y~a  199 (287)
                      ++++|++|||||.... .+..+ .+.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+. .+.+++..|++
T Consensus        81 ~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~  159 (254)
T PRK07478         81 FGGLDIAFNNAGTLGEMGPVAE-MSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAA  159 (254)
T ss_pred             cCCCCEEEECCCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCcchhHH
Confidence            9999999999998643 33333 34578999999999999999999999997654 899999999886 57788999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+|++++++.++.|++++ |+||+|+||+++|++.+.....     ....+..+...+..++.+|+|+|+.+++|++++
T Consensus       160 sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~  234 (254)
T PRK07478        160 SKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT-----PEALAFVAGLHALKRMAQPEEIAQAALFLASDA  234 (254)
T ss_pred             HHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC-----HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCch
Confidence            9999999999999999887 9999999999999987542110     011222333334456778999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       235 ~~~~~G~~~  243 (254)
T PRK07478        235 ASFVTGTAL  243 (254)
T ss_pred             hcCCCCCeE
Confidence            999999853

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=100.00  E-value=8.7e-41  Score=289.42  Aligned_cols=240  Identities=27%  Similarity=0.357  Sum_probs=196.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +.+++|+++||||++|||++++++|+++|++|++++|+.+++++..++.    +.++.++++|++|.++++++++++.+.
T Consensus         2 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (263)
T PRK06200          2 GWLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF----GDHVLVVEGDVTSYADNQRAVDQTVDA   77 (263)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence            4568999999999999999999999999999999999988877665543    235788999999999999999999999


Q ss_pred             cCCccEEEEccccCCC-CCCCCCCCCCC----cccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          123 FGRLDHLVTNAGVVPM-CLFEDYTDITK----PAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       123 ~~~idvli~nag~~~~-~~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++++|++|||||+... .++.+. +.++    |++++++|+.+++.+++.++|.|++++|+||+++|..+..+.++...|
T Consensus        78 ~g~id~li~~ag~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y  156 (263)
T PRK06200         78 FGKLDCFVGNAGIWDYNTSLVDI-PAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGGPLY  156 (263)
T ss_pred             cCCCCEEEECCCCcccCCCcccC-ChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCCchh
Confidence            9999999999998643 223232 2233    788999999999999999999998777999999999999998999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC-cCCCccc---hHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN-KNGKLEV---DQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      +++|+|++++++.++.|++++||||+|+||+++|++....... .......   ..+..+...+..++.+|+|+|++++|
T Consensus       157 ~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~f  236 (263)
T PRK06200        157 TASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVL  236 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhh
Confidence            9999999999999999998779999999999999986432111 1100011   11222233344456689999999999


Q ss_pred             hhccC-CccccCCCC
Q 042560          274 SACRG-DRYLTQPSW  287 (287)
Q Consensus       274 l~~~~-~~~itG~~~  287 (287)
                      |+++. ++|+||+.+
T Consensus       237 l~s~~~~~~itG~~i  251 (263)
T PRK06200        237 LASRRNSRALTGVVI  251 (263)
T ss_pred             eecccccCcccceEE
Confidence            99999 999999864

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=4.6e-41  Score=290.86  Aligned_cols=236  Identities=20%  Similarity=0.146  Sum_probs=186.4

Q ss_pred             CCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||  ++|||+++|++|+++|++|++++|.....+ ..+++....+ ....+++|++|+++++++++++.+
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~   80 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAEFG-SDLVFPCDVASDEQIDALFASLGQ   80 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHH-HHHHHHHhcC-CcceeeccCCCHHHHHHHHHHHHH
Confidence            367999999996  689999999999999999999876532222 2222222212 234688999999999999999999


Q ss_pred             hcCCccEEEEccccCCCC----CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMC----LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +++++|++|||||.....    ++.+..+.++|++.+++|+.+++.++++++|.|+ ++|+||++||..+..+.+++..|
T Consensus        81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~-~~g~Ii~iss~~~~~~~~~~~~Y  159 (260)
T PRK06997         81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS-DDASLLTLSYLGAERVVPNYNTM  159 (260)
T ss_pred             HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCceEEEEeccccccCCCCcchH
Confidence            999999999999986432    1222234578999999999999999999999995 45899999999999899999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ++||+|+.+|+++++.|++++ ||||+|+||+++|++..... ..   ....++. ....+..++++|||||+.++||++
T Consensus       160 ~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~-~~---~~~~~~~-~~~~p~~r~~~pedva~~~~~l~s  234 (260)
T PRK06997        160 GLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIK-DF---GKILDFV-ESNAPLRRNVTIEEVGNVAAFLLS  234 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcccc-ch---hhHHHHH-HhcCcccccCCHHHHHHHHHHHhC
Confidence            999999999999999999988 99999999999998754321 00   0001111 122234455689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       235 ~~~~~itG~~i  245 (260)
T PRK06997        235 DLASGVTGEIT  245 (260)
T ss_pred             ccccCcceeEE
Confidence            99999999853

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-40  Score=281.44  Aligned_cols=224  Identities=30%  Similarity=0.423  Sum_probs=201.3

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ....+.+|++++||||++|+|+++|.+|+++|+++++.|.|.+..+++.++++..|  +++.+.||+++.+++.+..+++
T Consensus        31 ~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   31 KPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             cchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHH
Confidence            37888999999999999999999999999999999999999999999999998774  7999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|.+|++|||||+.+..+..+.++ +++++.+++|+.++++..++|+|.|.++ +|+||+++|.+|..+.++...|+
T Consensus       109 k~e~G~V~ILVNNAGI~~~~~ll~~~d-~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~Yc  187 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAGIVTGKKLLDCSD-EEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYC  187 (300)
T ss_pred             HHhcCCceEEEeccccccCCCccCCCH-HHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhh
Confidence            999999999999999999988888544 8999999999999999999999998764 59999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhC---CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFG---GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~---~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +||+|+.+|.++|..|+.   .+ |+...|+|++++|+|....  .+             .....|+-+|+++|+.++..
T Consensus       188 aSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~~--~~-------------~~~l~P~L~p~~va~~Iv~a  252 (300)
T KOG1201|consen  188 ASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDGA--TP-------------FPTLAPLLEPEYVAKRIVEA  252 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCCC--CC-------------CccccCCCCHHHHHHHHHHH
Confidence            999999999999999975   34 9999999999999998751  11             12345677899999999988


Q ss_pred             hccCCcc
Q 042560          275 ACRGDRY  281 (287)
Q Consensus       275 ~~~~~~~  281 (287)
                      +..+...
T Consensus       253 i~~n~~~  259 (300)
T KOG1201|consen  253 ILTNQAG  259 (300)
T ss_pred             HHcCCcc
Confidence            7655443

>PRK06114 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.3e-41  Score=287.87  Aligned_cols=238  Identities=26%  Similarity=0.324  Sum_probs=197.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+ .+++..++++..+ .++..+++|++|+++++++++++.
T Consensus         3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~   81 (254)
T PRK06114          3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG-RRAIQIAADVTSKADLRAAVARTE   81 (254)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999754 4566666665544 368889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC--Chhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR--MSFY  197 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~--~~~Y  197 (287)
                      ++++++|++|||+|.....+..+. +.+++++.+++|+.+++.++++++|.|++++ |++|++||..+..+.++  +..|
T Consensus        82 ~~~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y  160 (254)
T PRK06114         82 AELGALTLAVNAAGIANANPAEEM-EEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLLQAHY  160 (254)
T ss_pred             HHcCCCCEEEECCCCCCCCChHhC-CHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCCcchH
Confidence            999999999999998765554443 4578999999999999999999999987654 89999999998876654  6899


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|++++++.++.|+.++ |+||+|+||+++|++.....     . ....+......+..++.+|||||+.++||++
T Consensus       161 ~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~-----~-~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s  234 (254)
T PRK06114        161 NASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPE-----M-VHQTKLFEEQTPMQRMAKVDEMVGPAVFLLS  234 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccccc-----c-hHHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            999999999999999999887 99999999999999865310     0 0011112223344556689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       235 ~~~~~~tG~~i  245 (254)
T PRK06114        235 DAASFCTGVDL  245 (254)
T ss_pred             ccccCcCCceE
Confidence            99999999864

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=4.7e-41  Score=290.99  Aligned_cols=232  Identities=14%  Similarity=0.144  Sum_probs=190.0

Q ss_pred             CCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++||+++||||++  |||+++|++|+++|++|++++|+ .++++..+++....+ .+..+.+|++|+++++++++++.++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLG-SDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccC-CceEeecCCCCHHHHHHHHHHHHhh
Confidence            6899999999986  99999999999999999999987 344445555544332 3677889999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCC----CCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLF----EDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||||+....+.    ....+.++|++++++|+.+++.+++.+.|.++ ++|+||++||..+..+.+++..|+
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~g~Iv~iss~~~~~~~~~~~~Y~  160 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN-PGSALLTLSYLGAERAIPNYNVMG  160 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc-CCcEEEEEecCCCCCCCCCcchhH
Confidence            9999999999998643221    11234467889999999999999999998765 468999999999988999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +||+|+++|++.++.|++++ ||||+|+||+++|++.....   .     .++..+   ...+..++++|||||++++||
T Consensus       161 asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~---~-----~~~~~~~~~~~~p~~r~~~pedva~~~~~L  232 (262)
T PRK07984        161 LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK---D-----FRKMLAHCEAVTPIRRTVTIEDVGNSAAFL  232 (262)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCC---c-----hHHHHHHHHHcCCCcCCCCHHHHHHHHHHH
Confidence            99999999999999999987 99999999999998753210   0     111222   223445567899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++++||+.+
T Consensus       233 ~s~~~~~itG~~i  245 (262)
T PRK07984        233 CSDLSAGISGEVV  245 (262)
T ss_pred             cCcccccccCcEE
Confidence            9999999999853

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=100.00  E-value=3.3e-41  Score=296.09  Aligned_cols=235  Identities=17%  Similarity=0.119  Sum_probs=191.2

Q ss_pred             CCCCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc--------C-C---CeeEEEeecC-
Q 042560           42 AEDVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM--------G-S---PFALAIPADV-  106 (287)
Q Consensus        42 ~~~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~--------~-~---~~~~~~~~D~-  106 (287)
                      .++++||+++||||  ++|||+++|+.|++.|++|++ +|+..++++....+...        . +   .....+.+|+ 
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   82 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV   82 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence            46689999999999  899999999999999999999 78888777776555421        1 1   1146788898 


Q ss_pred             -CC------------------HHHHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHHH
Q 042560          107 -SK------------------VEDCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYGT  165 (287)
Q Consensus       107 -~~------------------~~~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~  165 (287)
                       ++                  +++++++++++.+++|++|++|||||...  ..++.+ .+.++|++++++|+.+++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~-~~~e~~~~~~~vN~~~~~~l~  161 (303)
T PLN02730         83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLE-TSRKGYLAAISASSYSFVSLL  161 (303)
T ss_pred             cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhh-CCHHHHHHHHHHHhHHHHHHH
Confidence             43                  34899999999999999999999998643  244444 456899999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCCCCCCCCC-hhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcC
Q 042560          166 YFAIPYLKQTKGKIIVVASAAGWLPPPRM-SFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKN  242 (287)
Q Consensus       166 ~~~~~~l~~~~g~iv~isS~~~~~~~~~~-~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~  242 (287)
                      ++++|.|++ +|+||++||..+..+.|++ ..|+++|+|+++|+++|+.|+++ + ||||+|+||+++|+|.+.. ..  
T Consensus       162 ~~~~p~m~~-~G~II~isS~a~~~~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~-~~--  237 (303)
T PLN02730        162 QHFGPIMNP-GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAI-GF--  237 (303)
T ss_pred             HHHHHHHhc-CCEEEEEechhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcc-cc--
Confidence            999999976 4999999999998888865 58999999999999999999975 5 9999999999999987642 10  


Q ss_pred             CCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          243 GKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       243 ~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                           .++..+..   .+..++.+|+|+|+.++||+++.++++||+.+
T Consensus       238 -----~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l  280 (303)
T PLN02730        238 -----IDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATI  280 (303)
T ss_pred             -----cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence                 11222211   23344668999999999999999999999853

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=6.1e-41  Score=291.90  Aligned_cols=235  Identities=19%  Similarity=0.165  Sum_probs=188.8

Q ss_pred             CCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||+  +|||+++|++|+++|++|++++|+.. .++..+++....+ ....+++|++|+++++++++++.+
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~   84 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAELG-AFVAGHCDVTDEASIDAVFETLEK   84 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhcC-CceEEecCCCCHHHHHHHHHHHHH
Confidence            4578999999997  89999999999999999999988743 2222333322212 255789999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +++++|++|||||+...    .++.+ .+.++|++.+++|+.+++.++++++|.|.+ +|+||++||..+..+.|++..|
T Consensus        85 ~~g~iD~lv~nAG~~~~~~~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-~g~Iv~iss~~~~~~~p~~~~Y  162 (272)
T PRK08159         85 KWGKLDFVVHAIGFSDKDELTGRYVD-TSRDNFTMTMDISVYSFTAVAQRAEKLMTD-GGSILTLTYYGAEKVMPHYNVM  162 (272)
T ss_pred             hcCCCcEEEECCcccCccccccCccc-CCHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CceEEEEeccccccCCCcchhh
Confidence            99999999999998653    23333 345789999999999999999999999964 5899999999998899999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+.+|+++++.|++++ ||||+|+||+++|++.....   + . ....+..+...+..++.+|||||+.++||++
T Consensus       163 ~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~---~-~-~~~~~~~~~~~p~~r~~~peevA~~~~~L~s  237 (272)
T PRK08159        163 GVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIG---D-F-RYILKWNEYNAPLRRTVTIEEVGDSALYLLS  237 (272)
T ss_pred             hhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCC---c-c-hHHHHHHHhCCcccccCCHHHHHHHHHHHhC
Confidence            999999999999999999988 99999999999998754211   0 0 0001111122333445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       238 ~~~~~itG~~i  248 (272)
T PRK08159        238 DLSRGVTGEVH  248 (272)
T ss_pred             ccccCccceEE
Confidence            99999999864

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-41  Score=289.77  Aligned_cols=240  Identities=20%  Similarity=0.223  Sum_probs=197.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++| +.+.+++..++++...+.++.++++|++|+++++++++++.
T Consensus         3 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   82 (260)
T PRK08416          3 SNEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID   82 (260)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999998875 56666666666654434578999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC------CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPM------CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR  193 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~  193 (287)
                      +.++++|++|||||....      .++.+ .+.+++++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++
T Consensus        83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~  161 (260)
T PRK08416         83 EDFDRVDFFISNAIISGRAVVGGYTKFMR-LKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIEN  161 (260)
T ss_pred             HhcCCccEEEECccccccccccccCChhh-CCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCC
Confidence            999999999999987532      22222 23467889999999999999999999997654 89999999999889899


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      +..|+++|+|++++++.++.|++++ |+||+|+||+++|++...+...+     ...+......+..++.+|+|+|+.++
T Consensus       162 ~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~-----~~~~~~~~~~~~~r~~~p~~va~~~~  236 (260)
T PRK08416        162 YAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYE-----EVKAKTEELSPLNRMGQPEDLAGACL  236 (260)
T ss_pred             cccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCH-----HHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999987 99999999999999865421100     01111222233445668999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|+++.++++||+.+
T Consensus       237 ~l~~~~~~~~~G~~i  251 (260)
T PRK08416        237 FLCSEKASWLTGQTI  251 (260)
T ss_pred             HHcChhhhcccCcEE
Confidence            999999999999853

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=100.00  E-value=3e-40  Score=288.27  Aligned_cols=246  Identities=24%  Similarity=0.279  Sum_probs=201.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...+ .++..+++|++|+++++++++++.
T Consensus         4 ~~~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~   82 (278)
T PRK08277          4 NLFSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG-GEALAVKADVLDKESLEQARQQIL   82 (278)
T ss_pred             ceeccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999888887777776543 368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCC--------------CCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLF--------------EDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASA  185 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~--------------~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~  185 (287)
                      ++++++|++|||||.......              ....+.++|++.+++|+.+++.++++++|.|.+++ |+||++||.
T Consensus        83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~  162 (278)
T PRK08277         83 EDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSM  162 (278)
T ss_pred             HHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence            999999999999997543221              11123467889999999999999999999997654 899999999


Q ss_pred             CCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCH
Q 042560          186 AGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT  264 (287)
Q Consensus       186 ~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  264 (287)
                      .+..+.++...|+++|+|+++++++++.++++. |+||+|.||+++|++.+......+.......+......+..++++|
T Consensus       163 ~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  242 (278)
T PRK08277        163 NAFTPLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKILAHTPMGRFGKP  242 (278)
T ss_pred             hhcCCCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHhccCCccCCCCH
Confidence            999999999999999999999999999999987 9999999999999986644322211111111111122334455689


Q ss_pred             HHHHHHHHHhhcc-CCccccCCCC
Q 042560          265 EECAKAIVNSACR-GDRYLTQPSW  287 (287)
Q Consensus       265 ~evA~~i~~l~~~-~~~~itG~~~  287 (287)
                      ||+|++++||+++ .++++||+.+
T Consensus       243 ~dva~~~~~l~s~~~~~~~tG~~i  266 (278)
T PRK08277        243 EELLGTLLWLADEKASSFVTGVVL  266 (278)
T ss_pred             HHHHHHHHHHcCccccCCcCCCEE
Confidence            9999999999999 8999999864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=100.00  E-value=2.2e-40  Score=286.87  Aligned_cols=241  Identities=25%  Similarity=0.366  Sum_probs=194.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+.    .+.++..+++|++|.++++++++++.++
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA----HGDAVVGVEGDVRSLDDHKEAVARCVAA   76 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh----cCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999998776665432    2335888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCC-CCCCCCC---CCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMC-LFEDYTD---ITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~-~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||||..... +..+.+.   .++|++.+++|+.+++.++++++|.|.+++|++|+++|..+..+.++...|+
T Consensus        77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~  156 (262)
T TIGR03325        77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGGPLYT  156 (262)
T ss_pred             hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCCCchhH
Confidence            99999999999975422 2222211   1368899999999999999999999977678999999999999988899999


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC-cCCC--ccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          199 ASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN-KNGK--LEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      ++|+|+++|++.++.|++++||||+|+||+++|+|....... .+..  ....++..+...+..++++|||+|++++||+
T Consensus       157 ~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~  236 (262)
T TIGR03325       157 AAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFA  236 (262)
T ss_pred             HHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhcCCCCCCCChHHhhhheeeee
Confidence            999999999999999998779999999999999986532110 0100  0011223333345556678999999999999


Q ss_pred             ccC-CccccCCCC
Q 042560          276 CRG-DRYLTQPSW  287 (287)
Q Consensus       276 ~~~-~~~itG~~~  287 (287)
                      ++. +.|+||+.+
T Consensus       237 s~~~~~~~tG~~i  249 (262)
T TIGR03325       237 TRGDTVPATGAVL  249 (262)
T ss_pred             cCCCcccccceEE
Confidence            984 679999853

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08265 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-40  Score=286.68  Aligned_cols=235  Identities=23%  Similarity=0.236  Sum_probs=197.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    +.++.++++|++|+++++++++++.+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----GERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999988777665554    2368889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||+|....... + .+.++|++.+++|+.+++.++++++|.|++.+|+||++||..+..+.++...|+++|++
T Consensus        79 g~id~lv~~ag~~~~~~~-~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa  156 (261)
T PRK08265         79 GRVDILVNLACTYLDDGL-A-SSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGRWLYPASKAA  156 (261)
T ss_pred             CCCCEEEECCCCCCCCcC-c-CCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHH
Confidence            999999999998654432 2 34578999999999999999999999997556899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++++.++.|+.++ |+||+|+||+++|++.........   ...++..+...+..++++|||+|+++++|+++.++++
T Consensus       157 ~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~---~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~  233 (261)
T PRK08265        157 IRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDR---AKADRVAAPFHLLGRVGDPEEVAQVVAFLCSDAASFV  233 (261)
T ss_pred             HHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccch---hHHHHhhcccCCCCCccCHHHHHHHHHHHcCccccCc
Confidence            999999999999987 999999999999998754321110   0011111222344556789999999999999999999


Q ss_pred             cCCCC
Q 042560          283 TQPSW  287 (287)
Q Consensus       283 tG~~~  287 (287)
                      ||+.+
T Consensus       234 tG~~i  238 (261)
T PRK08265        234 TGADY  238 (261)
T ss_pred             cCcEE
Confidence            99864

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-40  Score=284.25  Aligned_cols=239  Identities=21%  Similarity=0.235  Sum_probs=203.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++..+.+|++|+++++++++++.+
T Consensus         4 ~~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (254)
T PRK08085          4 LFSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTHKQEVEAAIEHIEK   82 (254)
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            466889999999999999999999999999999999999988888877776544 3578889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||+|.....++.+. +.++|++++++|+.+++.+.+++.+.|.+++ |+||++||..+..+.++...|+++
T Consensus        83 ~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  161 (254)
T PRK08085         83 DIGPIDVLINNAGIQRRHPFTEF-PEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAAS  161 (254)
T ss_pred             hcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCCcchHHH
Confidence            99999999999998765555553 4478999999999999999999999986544 899999999999898999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++++++.++.+++++ |+||+|+||+++|++.......+     ...+..+...+..++++|||||+++.+|+++.+
T Consensus       162 K~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~  236 (254)
T PRK08085        162 KGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDE-----AFTAWLCKRTPAARWGDPQELIGAAVFLSSKAS  236 (254)
T ss_pred             HHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCH-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccc
Confidence            999999999999999887 99999999999999876432110     011222223344456689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       237 ~~i~G~~i  244 (254)
T PRK08085        237 DFVNGHLL  244 (254)
T ss_pred             cCCcCCEE
Confidence            99999863

>PRK08303 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-40  Score=291.96  Aligned_cols=240  Identities=20%  Similarity=0.243  Sum_probs=188.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh----------hHHHHHHHHHHhcCCCeeEEEeecCCCHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE----------RQLREVADQAELMGSPFALAIPADVSKVED  111 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~----------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  111 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+.          +.+++..+++...+ .++.++++|++|+++
T Consensus         3 ~~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~   81 (305)
T PRK08303          3 MKPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG-GRGIAVQVDHLVPEQ   81 (305)
T ss_pred             CcCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC-CceEEEEcCCCCHHH
Confidence            3567899999999999999999999999999999999974          34555566665443 357889999999999


Q ss_pred             HHHHHHHHHHhcCCccEEEEcc-ccCC---C-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCC
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNA-GVVP---M-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASA  185 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~na-g~~~---~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~  185 (287)
                      ++++++++.+++|++|++|||| |...   . .++.+ .+.++|++++++|+.+++.++++++|.|.++ +|+||++||.
T Consensus        82 v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~  160 (305)
T PRK08303         82 VRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWE-HSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDG  160 (305)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcccccccccCCchhh-cCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCc
Confidence            9999999999999999999999 7531   1 22222 3447788999999999999999999999765 4899999997


Q ss_pred             CCCC---CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-CCC
Q 042560          186 AGWL---PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-LLP  260 (287)
Q Consensus       186 ~~~~---~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  260 (287)
                      .+..   +.++...|+++|+|+.+|+++++.|+++. ||||+|+||+++|+|...........  . .+... ..+ ...
T Consensus       161 ~~~~~~~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~--~-~~~~~-~~p~~~~  236 (305)
T PRK08303        161 TAEYNATHYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEEN--W-RDALA-KEPHFAI  236 (305)
T ss_pred             cccccCcCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccc--h-hhhhc-ccccccc
Confidence            6643   33457789999999999999999999987 99999999999999854221100000  0 01111 112 233


Q ss_pred             CCCHHHHHHHHHHhhccCC-ccccCCCC
Q 042560          261 VQPTEECAKAIVNSACRGD-RYLTQPSW  287 (287)
Q Consensus       261 ~~~p~evA~~i~~l~~~~~-~~itG~~~  287 (287)
                      .++|||+|+.++||+++++ +|+||+.+
T Consensus       237 ~~~peevA~~v~fL~s~~~~~~itG~~l  264 (305)
T PRK08303        237 SETPRYVGRAVAALAADPDVARWNGQSL  264 (305)
T ss_pred             CCCHHHHHHHHHHHHcCcchhhcCCcEE
Confidence            4579999999999999884 69999864

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=100.00  E-value=7e-40  Score=282.30  Aligned_cols=239  Identities=22%  Similarity=0.300  Sum_probs=197.7

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.++++||+++||||++|||++++++|+++|++|++++++..  ++..+.+...+ .++..+++|++|.++++++++++
T Consensus         3 ~~~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~   79 (253)
T PRK08993          3 LDAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG-RRFLSLTADLRKIDGIPALLERA   79 (253)
T ss_pred             ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHH
Confidence            4567889999999999999999999999999999998877542  33444444433 46888999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....+..+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.++...|
T Consensus        80 ~~~~~~~D~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  158 (253)
T PRK08993         80 VAEFGHIDILVNNAGLIRREDAIEF-SEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSY  158 (253)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCCCCcch
Confidence            9999999999999998765555543 447899999999999999999999998664  3899999999999998889999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|++++++.++.|+.++ |+||+|+||+++|++.......+    ...++.. ...+..++.+|+|+|+.+.+|++
T Consensus       159 ~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~----~~~~~~~-~~~p~~r~~~p~eva~~~~~l~s  233 (253)
T PRK08993        159 TASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADE----QRSAEIL-DRIPAGRWGLPSDLMGPVVFLAS  233 (253)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccch----HHHHHHH-hcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999999887 99999999999999875421110    0011222 22344456689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       234 ~~~~~~~G~~~  244 (253)
T PRK08993        234 SASDYINGYTI  244 (253)
T ss_pred             ccccCccCcEE
Confidence            99999999863

>PRK07791 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.6e-40  Score=288.44  Aligned_cols=230  Identities=24%  Similarity=0.325  Sum_probs=194.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---------hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE---------RQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      .+++|+++||||++|||+++|++|+++|++|++++|+.         +.+++..+++...+ .++..+.+|++|++++++
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~   81 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG-GEAVANGDDIADWDGAAN   81 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC-CceEEEeCCCCCHHHHHH
Confidence            46899999999999999999999999999999998876         66777777776544 358889999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCC
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAG  187 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~  187 (287)
                      +++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++       .|+||++||..+
T Consensus        82 ~~~~~~~~~g~id~lv~nAG~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  160 (286)
T PRK07791         82 LVDAAVETFGGLDVLVNNAGILRDRMIANM-SEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG  160 (286)
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence            999999999999999999998766555443 458899999999999999999999998643       279999999999


Q ss_pred             CCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC--CCCCCH
Q 042560          188 WLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL--LPVQPT  264 (287)
Q Consensus       188 ~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p  264 (287)
                      ..+.+++..|+++|+|+++|+++++.|++++ ||||+|+|| ++|++....+          ++..+. .+.  ..+.+|
T Consensus       161 ~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~----------~~~~~~-~~~~~~~~~~p  228 (286)
T PRK07791        161 LQGSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVF----------AEMMAK-PEEGEFDAMAP  228 (286)
T ss_pred             CcCCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhH----------HHHHhc-CcccccCCCCH
Confidence            9999999999999999999999999999887 999999999 7998754211          111111 111  134589


Q ss_pred             HHHHHHHHHhhccCCccccCCCC
Q 042560          265 EECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       265 ~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ||+|++++||+++.++++||+.+
T Consensus       229 edva~~~~~L~s~~~~~itG~~i  251 (286)
T PRK07791        229 ENVSPLVVWLGSAESRDVTGKVF  251 (286)
T ss_pred             HHHHHHHHHHhCchhcCCCCcEE
Confidence            99999999999999999999864

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=5.2e-40  Score=283.70  Aligned_cols=233  Identities=22%  Similarity=0.214  Sum_probs=186.4

Q ss_pred             CCCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .++++|+++||||  ++|||+++|++|+++|++|++++|+.  +.+++..+++    +.++.++++|++|++++++++++
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~   78 (256)
T PRK07889          3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----PEPAPVLELDVTNEEHLASLADR   78 (256)
T ss_pred             ccccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----CCCCcEEeCCCCCHHHHHHHHHH
Confidence            4578999999999  89999999999999999999999864  3334433333    12577899999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCC----CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMC----LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      +.++++++|++|||||+....    ++.+ .+++++++.+++|+.+++.+++.++|.|++ +|+||++++. +..+.+.+
T Consensus        79 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~-~g~Iv~is~~-~~~~~~~~  155 (256)
T PRK07889         79 VREHVDGLDGVVHSIGFAPQSALGGNFLD-APWEDVATALHVSAYSLKSLAKALLPLMNE-GGSIVGLDFD-ATVAWPAY  155 (256)
T ss_pred             HHHHcCCCcEEEEccccccccccCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHhccc-CceEEEEeec-ccccCCcc
Confidence            999999999999999987432    2223 355788899999999999999999999975 5899999875 34567788


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC-CCCCHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL-PVQPTEECAKAIV  272 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~evA~~i~  272 (287)
                      ..|++||+|+++|+++++.|++++ ||||+|+||+++|++.+.... .    ....+......+.. ++.+|||||+.++
T Consensus       156 ~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~-~----~~~~~~~~~~~p~~~~~~~p~evA~~v~  230 (256)
T PRK07889        156 DWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG-F----ELLEEGWDERAPLGWDVKDPTPVARAVV  230 (256)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC-c----HHHHHHHHhcCccccccCCHHHHHHHHH
Confidence            899999999999999999999987 999999999999998653211 0    00011111112222 3568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|+++.++++||+.+
T Consensus       231 ~l~s~~~~~~tG~~i  245 (256)
T PRK07889        231 ALLSDWFPATTGEIV  245 (256)
T ss_pred             HHhCcccccccceEE
Confidence            999999999999853

>PRK06398 aldose dehydrogenase; Validated

Probab=100.00  E-value=4.8e-40  Score=284.20  Aligned_cols=232  Identities=23%  Similarity=0.276  Sum_probs=192.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++||+++||||++|||+++|++|+++|++|++++|+....            .++..+++|++|+++++++++++.++
T Consensus         2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------------~~~~~~~~D~~~~~~i~~~~~~~~~~   69 (258)
T PRK06398          2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY------------NDVDYFKVDVSNKEQVIKGIDYVISK   69 (258)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc------------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999986432            14778999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+ .+.++|++++++|+.+++.+++.++|.|++++ |+||++||..+..+.+++..|+++|
T Consensus        70 ~~~id~li~~Ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  148 (258)
T PRK06398         70 YGRIDILVNNAGIESYGAIHA-VEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSK  148 (258)
T ss_pred             cCCCCEEEECCCCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCCchhhhhH
Confidence            999999999999876655544 35578999999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHH---hhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIR---DVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|++++++.++.|++++|+||+|+||+++|++............ ....+..   ....+..++.+|||+|++++||+++
T Consensus       149 aal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~s~  228 (258)
T PRK06398        149 HAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFLASD  228 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999866999999999999998754321110000 0001111   1222334556899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       229 ~~~~~~G~~i  238 (258)
T PRK06398        229 LASFITGECV  238 (258)
T ss_pred             ccCCCCCcEE
Confidence            9999999863

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-39  Score=281.33  Aligned_cols=240  Identities=23%  Similarity=0.283  Sum_probs=200.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.+++++|+++||||++|||++++++|+++|++|++++|+ +..++..+.+...+ .++.++++|+++.++++++++++
T Consensus         8 ~~~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~   85 (258)
T PRK06935          8 MDFFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEA   85 (258)
T ss_pred             cccccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHH
Confidence            56677899999999999999999999999999999999998 55555655554443 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .+.++++|++|||+|.....++.+. +.++|++.+++|+.+++.++++++|.|.+++ |+||++||..+..+.+..+.|+
T Consensus        86 ~~~~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  164 (258)
T PRK06935         86 LEEFGKIDILVNNAGTIRRAPLLEY-KDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYT  164 (258)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCchhhH
Confidence            9999999999999998765554443 4478999999999999999999999997654 8999999999998989999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|+|++++++++++|++++ |+||+|+||+++|++.+.....+     ...+......+..++.+|+|+|+++.||+++
T Consensus       165 asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~  239 (258)
T PRK06935        165 ASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADK-----NRNDEILKRIPAGRWGEPDDLMGAAVFLASR  239 (258)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccCh-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCh
Confidence            99999999999999999887 99999999999999865321100     0111112223445567899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       240 ~~~~~~G~~i  249 (258)
T PRK06935        240 ASDYVNGHIL  249 (258)
T ss_pred             hhcCCCCCEE
Confidence            9999999863

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-39  Score=280.13  Aligned_cols=236  Identities=22%  Similarity=0.286  Sum_probs=193.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||++|||+++|++|+++|++|++++|+.+++++..++++..+  ++..+++|++|.++++++++++.++++++|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            69999999999999999999999999999999998888877776543  5788999999999999999999999999999


Q ss_pred             EEEccccCCCC--CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          129 LVTNAGVVPMC--LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       129 li~nag~~~~~--~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~--~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|||+|.....  +..+ .+.++|.+.+++|+.+++.+.+.++|.|.+  .+|+||++||..+..+.++...|+++|+|+
T Consensus        80 li~naG~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~  158 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHE-AGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGL  158 (259)
T ss_pred             EEECCCCCCCCcccccc-ccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHH
Confidence            99999975422  2333 344678888999999999999999998753  358999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC--CccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG--KLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +++++.++.+++++ |+||+|+||+++|++.+........  ....+++..+..   .+..++++|||||++++||++++
T Consensus       159 ~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~  238 (259)
T PRK08340        159 VQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTGRWEELGSLIAFLLSEN  238 (259)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCCCHHHHHHHHHHHcCcc
Confidence            99999999999987 9999999999999987532110000  001111111222   23344668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       239 ~~~itG~~i  247 (259)
T PRK08340        239 AEYMLGSTI  247 (259)
T ss_pred             cccccCceE
Confidence            999999863

>PRK12747 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-39  Score=279.38  Aligned_cols=235  Identities=23%  Similarity=0.314  Sum_probs=193.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh-
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH-  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-  122 (287)
                      +++|+++||||++|||++++++|+++|++|+++. |+.+..++...++...+ .++..+.+|+++.++++.+++++.+. 
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcC-CceEEEecccCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999875 56677777766665544 35788899999999999999888753 


Q ss_pred             ---cC--CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          123 ---FG--RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       123 ---~~--~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                         ++  ++|++|||||.....+..+ .+.++|++++++|+.+++.++++++|.|++ .|+||++||..+..+.++...|
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y  158 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEE-TTEQFFDRMVSVNAKAPFFIIQQALSRLRD-NSRIINISSAATRISLPDFIAY  158 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCccc-CCHHHHHHHHHHhhhHHHHHHHHHHHHhhc-CCeEEEECCcccccCCCCchhH
Confidence               34  8999999999865444444 344779999999999999999999999975 5899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ++||+|++++++.++.|++++ |+||+|+||+++|++.......+     ...+..+...+..++.+|||+|+.+++|++
T Consensus       159 ~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~s  233 (252)
T PRK12747        159 SMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDP-----MMKQYATTISAFNRLGEVEDIADTAAFLAS  233 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCH-----HHHHHHHhcCcccCCCCHHHHHHHHHHHcC
Confidence            999999999999999999887 99999999999999865432110     011222222234456789999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       234 ~~~~~~~G~~i  244 (252)
T PRK12747        234 PDSRWVTGQLI  244 (252)
T ss_pred             ccccCcCCcEE
Confidence            99999999853

>PRK07035 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3e-39  Score=277.94  Aligned_cols=241  Identities=28%  Similarity=0.330  Sum_probs=201.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++..+++|+++.++++++++++.
T Consensus         2 ~~~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   80 (252)
T PRK07035          2 NLFDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEMEQIDALFAHIR   80 (252)
T ss_pred             CccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999888888877776544 357889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||+|...........+.+++++.+++|+.+++.++++++|.|++++ |+++++||..+..+.++++.|++
T Consensus        81 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~  160 (252)
T PRK07035         81 ERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSI  160 (252)
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCCcchHH
Confidence            99999999999999754322222234577889999999999999999999987654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+++++++++++.|++++ |+|++|+||+++|++.......+    . ..+......+..++.+|||+|+++++|+++.
T Consensus       161 sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~  235 (252)
T PRK07035        161 TKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKND----A-ILKQALAHIPLRRHAEPSEMAGAVLYLASDA  235 (252)
T ss_pred             HHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCH----H-HHHHHHccCCCCCcCCHHHHHHHHHHHhCcc
Confidence            9999999999999999887 99999999999999876432211    0 1111222233445668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +.++||+.+
T Consensus       236 ~~~~~g~~~  244 (252)
T PRK07035        236 SSYTTGECL  244 (252)
T ss_pred             ccCccCCEE
Confidence            999999853

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=100.00  E-value=8.9e-41  Score=285.87  Aligned_cols=222  Identities=31%  Similarity=0.404  Sum_probs=192.9

Q ss_pred             cCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-CCccEEE
Q 042560           54 GAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-GRLDHLV  130 (287)
Q Consensus        54 Ga~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~~idvli  130 (287)
                      |++  +|||+++|++|+++|++|++++|+.+++++..+++....+.+  .+++|++++++++++++++.+++ |++|++|
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV   78 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE--VIQCDLSDEESVEALFDEAVERFGGRIDILV   78 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE--EEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc--eEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence            666  999999999999999999999999999877777776655444  59999999999999999999999 9999999


Q ss_pred             EccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          131 TNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       131 ~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      ||+|....    .++.+ .+.++|++.+++|+.+++.+++++.|.|++ +|+||++||..+..+.+++..|+++|+|+++
T Consensus        79 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gsii~iss~~~~~~~~~~~~y~~sKaal~~  156 (241)
T PF13561_consen   79 NNAGISPPSNVEKPLLD-LSEEDWDKTFDINVFSPFLLAQAALPLMKK-GGSIINISSIAAQRPMPGYSAYSASKAALEG  156 (241)
T ss_dssp             EEEESCTGGGTSSSGGG-SHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-EEEEEEEEEGGGTSBSTTTHHHHHHHHHHHH
T ss_pred             ecccccccccCCCChHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCcccccchhhcccCccchhhHHHHHHHHH
Confidence            99998876    44444 345789999999999999999999998876 5899999999999999999999999999999


Q ss_pred             HHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC---CHHHHHHHHHHhhccCCcc
Q 042560          207 LYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       207 ~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~evA~~i~~l~~~~~~~  281 (287)
                      |+|++|.|+++ + ||||+|+||+++|++......        .++..+......|++   +|||||++++||+++.++|
T Consensus       157 l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~--------~~~~~~~~~~~~pl~r~~~~~evA~~v~fL~s~~a~~  228 (241)
T PF13561_consen  157 LTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPG--------NEEFLEELKKRIPLGRLGTPEEVANAVLFLASDAASY  228 (241)
T ss_dssp             HHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHT--------HHHHHHHHHHHSTTSSHBEHHHHHHHHHHHHSGGGTT
T ss_pred             HHHHHHHHhccccCeeeeeecccceeccchhcccc--------ccchhhhhhhhhccCCCcCHHHHHHHHHHHhCccccC
Confidence            99999999999 7 999999999999998653211        244555555556665   5999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      ||||.+
T Consensus       229 itG~~i  234 (241)
T PF13561_consen  229 ITGQVI  234 (241)
T ss_dssp             GTSEEE
T ss_pred             ccCCeE
Confidence            999864

...

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-39  Score=278.96  Aligned_cols=241  Identities=23%  Similarity=0.266  Sum_probs=205.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.+++++|+++||||++|||++++++|+++|++|++++|+.++.++..+.++..+ .++..+++|++|+++++++++++
T Consensus         3 ~~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~   81 (255)
T PRK07523          3 LNLFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTDHDAVRAAIDAF   81 (255)
T ss_pred             ccccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCCHHHHHHHHHHH
Confidence            56677899999999999999999999999999999999999988887777776543 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++++.+.|.++ .|+||++||..+..+.+++..|+
T Consensus        82 ~~~~~~~d~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~  160 (255)
T PRK07523         82 EAEIGPIDILVNNAGMQFRTPLEDF-PADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYT  160 (255)
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCCccHH
Confidence            9999999999999998766555443 457889999999999999999999999765 48999999999998999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|++++++++.++.+++++ |+||+|+||+++|++.......+     ...+..+...+..++++|||+|+++++|+++
T Consensus       161 ~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  235 (255)
T PRK07523        161 ATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADP-----EFSAWLEKRTPAGRWGKVEELVGACVFLASD  235 (255)
T ss_pred             HHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCH-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999999887 99999999999999865432110     0112223333445566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++++||+.+
T Consensus       236 ~~~~~~G~~i  245 (255)
T PRK07523        236 ASSFVNGHVL  245 (255)
T ss_pred             hhcCccCcEE
Confidence            9999999863

>PRK06172 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-39  Score=277.28  Aligned_cols=237  Identities=27%  Similarity=0.372  Sum_probs=201.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||.+++++|+++|++|++++|+.+++++..++++..+ .++..+.+|++|.++++++++++.++
T Consensus         3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~   81 (253)
T PRK06172          3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAA   81 (253)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999988887777776544 46889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|...........+.+++++.+++|+.+++.++++++|.|.+++ +++|++||..+..+.+++..|+++|
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK  161 (253)
T PRK06172         82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASK  161 (253)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHH
Confidence            999999999999865443222335578899999999999999999999886554 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|++++++.++.++.++ |+|++|+||+++|++.......       .++..+   ...+..++.+|+|+|+.+++|+++
T Consensus       162 aa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~  234 (253)
T PRK06172        162 HAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA-------DPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSD  234 (253)
T ss_pred             HHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc-------ChHHHHHHhccCCCCCccCHHHHHHHHHHHhCc
Confidence            99999999999999887 9999999999999987653221       122222   223334556899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       235 ~~~~~~G~~i  244 (253)
T PRK06172        235 GASFTTGHAL  244 (253)
T ss_pred             cccCcCCcEE
Confidence            9999999864

>PRK06125 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-39  Score=278.76  Aligned_cols=240  Identities=26%  Similarity=0.239  Sum_probs=198.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++....+.++..+.+|++|++++++++++    
T Consensus         3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~----   78 (259)
T PRK06125          3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE----   78 (259)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH----
Confidence            5678999999999999999999999999999999999998888877777655445688999999999999888754    


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|.....++.+. +.++|++++++|+.+++.++++++|.|.+++ |+||++||..+..+.+++..|+++|
T Consensus        79 ~g~id~lv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~ask  157 (259)
T PRK06125         79 AGDIDILVNNAGAIPGGGLDDV-DDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADYICGSAGN  157 (259)
T ss_pred             hCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCchHhHHHH
Confidence            5789999999998766555553 5588999999999999999999999998654 8999999999998888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---CCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---LPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~evA~~i~~l~~~  277 (287)
                      +|+++++++++.|+.+. |+||+|+||+++|++....+..+......+++..+.....   ..+.+|+|+|+.+++|+++
T Consensus       158 ~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~  237 (259)
T PRK06125        158 AALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEEVADLVAFLASP  237 (259)
T ss_pred             HHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999887 9999999999999976543221111111122333333333   3345799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       238 ~~~~~~G~~i  247 (259)
T PRK06125        238 RSGYTSGTVV  247 (259)
T ss_pred             hhccccCceE
Confidence            9999999863

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-39  Score=277.55  Aligned_cols=245  Identities=23%  Similarity=0.239  Sum_probs=205.7

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+.+...+ .++..+++|++|+++++++++++
T Consensus         3 ~~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~   81 (265)
T PRK07097          3 ENLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTDEDGVQAMVSQI   81 (265)
T ss_pred             ccccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999988888777776544 36889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||+|.....+..+ .+.+++++++++|+.+++.+.+.++|.|++++ |+||++||..+..+.+++..|+
T Consensus        82 ~~~~~~id~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  160 (265)
T PRK07097         82 EKEVGVIDILVNNAGIIKRIPMLE-MSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYA  160 (265)
T ss_pred             HHhCCCCCEEEECCCCCCCCCccc-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCccHH
Confidence            999999999999999877655544 34588999999999999999999999997654 8999999999999989999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccC-cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLN-KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ++|+++++++++++.++.+. |+||+|+||+++|++....... +........+......+...+.+|+|+|+.++++++
T Consensus       161 ~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  240 (265)
T PRK07097        161 AAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLAS  240 (265)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhC
Confidence            99999999999999999887 9999999999999987543211 110111111222222233456689999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      +.+++++|+.
T Consensus       241 ~~~~~~~g~~  250 (265)
T PRK07097        241 DASNFVNGHI  250 (265)
T ss_pred             cccCCCCCCE
Confidence            9999999985

>PRK07985 oxidoreductase; Provisional

Probab=100.00  E-value=5.6e-39  Score=282.59  Aligned_cols=233  Identities=25%  Similarity=0.289  Sum_probs=192.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.  +..++..+.+...+ .++..+.+|++|.+++.++++++.+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~  124 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG-RKAVLLPGDLSDEKFARSLVHEAHK  124 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999988653  34455555444433 4688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      .++++|++|||||.... .+..+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+++
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-~g~iv~iSS~~~~~~~~~~~~Y~as  202 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIAD-LTSEQFQKTFAINVFALFWLTQEAIPLLPK-GASIITTSSIQAYQPSPHLLDYAAT  202 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHhhhc-CCEEEEECCchhccCCCCcchhHHH
Confidence            99999999999997533 33333 355889999999999999999999999965 5899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+|++++++.++.|++++ |+||+|+||+++|++......        .++..+   ...+..++++|||||++++||++
T Consensus       203 Kaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~--------~~~~~~~~~~~~~~~r~~~pedva~~~~fL~s  274 (294)
T PRK07985        203 KAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--------TQDKIPQFGQQTPMKRAGQPAELAPVYVYLAS  274 (294)
T ss_pred             HHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC--------CHHHHHHHhccCCCCCCCCHHHHHHHHHhhhC
Confidence            999999999999999887 999999999999998532100        111122   22233346689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       275 ~~~~~itG~~i  285 (294)
T PRK07985        275 QESSYVTAEVH  285 (294)
T ss_pred             hhcCCccccEE
Confidence            99999999863

>PRK07831 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-39  Score=276.45  Aligned_cols=235  Identities=29%  Similarity=0.336  Sum_probs=199.9

Q ss_pred             CCCCCCEEEEecCCC-hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASS-GIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-MGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~-giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++|+++||||+| |||+++++.|+++|++|++++|+.+++++..++++. .+..++..+++|++++++++++++++.
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            345789999999985 999999999999999999999999888887777765 333468889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +.++++|++|||+|.....++.+. +.++|++.+++|+.+++.+++.++|.|.+.  .|+||+++|..+..+.++...|+
T Consensus        93 ~~~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~  171 (262)
T PRK07831         93 ERLGRLDVLVNNAGLGGQTPVVDM-TDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYA  171 (262)
T ss_pred             HHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchH
Confidence            999999999999998765555443 447899999999999999999999998765  48999999999998888999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l  274 (287)
                      ++|+|++++++.++.|++++ |+||+|+||+++|++.....         .++..+.   ..+..++.+|+|+|+.++||
T Consensus       172 ~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---------~~~~~~~~~~~~~~~r~~~p~~va~~~~~l  242 (262)
T PRK07831        172 AAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---------SAELLDELAAREAFGRAAEPWEVANVIAFL  242 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999987 99999999999999865321         1222222   22334456799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      +++.++|+||+.+
T Consensus       243 ~s~~~~~itG~~i  255 (262)
T PRK07831        243 ASDYSSYLTGEVV  255 (262)
T ss_pred             cCchhcCcCCceE
Confidence            9999999999864

>PLN02253 xanthoxin dehydrogenase

Probab=100.00  E-value=1.8e-38  Score=277.31  Aligned_cols=244  Identities=22%  Similarity=0.310  Sum_probs=196.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++..  +.++.++++|++|.++++++++++.
T Consensus        12 ~~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~   89 (280)
T PLN02253         12 PSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG--EPNVCFFHCDVTVEDDVSRAVDFTV   89 (280)
T ss_pred             cccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--CCceEEEEeecCCHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999988777766665532  2468899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhh
Q 042560          121 EHFGRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++++++|++|||||....  ..+.+ .+.+++++++++|+.+++.++++++|.|.++ +|++|+++|..+..+.++...|
T Consensus        90 ~~~g~id~li~~Ag~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y  168 (280)
T PLN02253         90 DKFGTLDIMVNNAGLTGPPCPDIRN-VELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAY  168 (280)
T ss_pred             HHhCCCCEEEECCCcCCCCCCCccc-CCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCCccc
Confidence            999999999999998643  22333 3457889999999999999999999998654 4899999999998888888899


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----CCCCCHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----LPVQPTEECAKAIV  272 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~evA~~i~  272 (287)
                      +++|+|++++++.++.|++++ |+||+++||+++|++.................+.......    ....+|+|+|++++
T Consensus       169 ~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~  248 (280)
T PLN02253        169 TGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVELTVDDVANAVL  248 (280)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHH
Confidence            999999999999999999887 9999999999999986533211110000001111111111    22357999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +++++.++|+||+.+
T Consensus       249 ~l~s~~~~~i~G~~i  263 (280)
T PLN02253        249 FLASDEARYISGLNL  263 (280)
T ss_pred             hhcCcccccccCcEE
Confidence            999999999999853

>PRK08643 acetoin reductase; Validated

Probab=100.00  E-value=1.6e-38  Score=274.02  Aligned_cols=239  Identities=26%  Similarity=0.330  Sum_probs=199.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||+++++.|+++|++|++++|+.+..++..+++...+ .++.++.+|++++++++++++++.++++++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            7899999999999999999999999999999999988888777776544 368889999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      |++|||+|.....+..+ .+.+.+++++++|+.+++.+++.+++.|++.  +|+||++||..+..+.++...|+++|+++
T Consensus        81 d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~  159 (256)
T PRK08643         81 NVVVNNAGVAPTTPIET-ITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAV  159 (256)
T ss_pred             CEEEECCCCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHH
Confidence            99999999876554444 3447789999999999999999999998764  37999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchH----HHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQ----EIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++.++.|+.+. |+||+|+||+++|++..............++    +......+..++.+|||+|+.+++|+++.+
T Consensus       160 ~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~  239 (256)
T PRK08643        160 RGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGPDS  239 (256)
T ss_pred             HHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCccc
Confidence            99999999999887 9999999999999987643221111000011    111122234456689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       240 ~~~~G~~i  247 (256)
T PRK08643        240 DYITGQTI  247 (256)
T ss_pred             cCccCcEE
Confidence            99999864

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.7e-38  Score=273.86  Aligned_cols=237  Identities=30%  Similarity=0.425  Sum_probs=189.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++++.+...   +++...   .+.++++|++|+++++++++++.+
T Consensus         2 ~~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~---~~l~~~---~~~~~~~Dl~~~~~~~~~~~~~~~   75 (255)
T PRK06463          2 SMRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEA---KELREK---GVFTIKCDVGNRDQVKKSKEVVEK   75 (255)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHhC---CCeEEEecCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999998877654322   222221   367889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCC-CCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWL-PPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~-~~~~~~~Y~a  199 (287)
                      .++++|++|||+|.....++.+. +.++|++.+++|+.+++.+++.++|.|+++ +|+||++||..+.. +.++...|++
T Consensus        76 ~~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  154 (255)
T PRK06463         76 EFGRVDVLVNNAGIMYLMPFEEF-DEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAI  154 (255)
T ss_pred             HcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCCCccHhHH
Confidence            99999999999998765544443 447899999999999999999999999754 48999999998874 4567889999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+++++++++.|+++. |+||+|+||+++|++.......+.  .....+......+..++.+|+|+|+.+++|+++.
T Consensus       155 sKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~  232 (255)
T PRK06463        155 TKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEE--AEKLRELFRNKTVLKTTGKPEDIANIVLFLASDD  232 (255)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccc--hHHHHHHHHhCCCcCCCcCHHHHHHHHHHHcChh
Confidence            9999999999999999887 999999999999998753211110  0001111112223344568999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +.++||+.+
T Consensus       233 ~~~~~G~~~  241 (255)
T PRK06463        233 ARYITGQVI  241 (255)
T ss_pred             hcCCCCCEE
Confidence            999999863

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=100.00  E-value=3.6e-38  Score=271.80  Aligned_cols=238  Identities=22%  Similarity=0.305  Sum_probs=200.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|+++++++|+.+..++..++++..+ .++..+.+|++|.+++.++++.+.
T Consensus         5 ~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~   83 (255)
T PRK06113          5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAL   83 (255)
T ss_pred             cccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4557889999999999999999999999999999999999888887777776544 358889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||+|.....+. + .+.+++++.+++|+.+++.++++++|.|.+.+ |++|++||..+..+.++...|++
T Consensus        84 ~~~~~~d~li~~ag~~~~~~~-~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~  161 (255)
T PRK06113         84 SKLGKVDILVNNAGGGGPKPF-D-MPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYAS  161 (255)
T ss_pred             HHcCCCCEEEECCCCCCCCCC-C-CCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCcchhHH
Confidence            999999999999998654433 2 34477888999999999999999999997544 79999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+++++++++.++.+. |+||+|.||+++|++.......     . ..+......+..++++|+|+|+++++|+++.
T Consensus       162 sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~  235 (255)
T PRK06113        162 SKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP-----E-IEQKMLQHTPIRRLGQPQDIANAALFLCSPA  235 (255)
T ss_pred             HHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCH-----H-HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc
Confidence            9999999999999999887 9999999999999987643210     0 1111122223345668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +.++||+.+
T Consensus       236 ~~~~~G~~i  244 (255)
T PRK06113        236 ASWVSGQIL  244 (255)
T ss_pred             ccCccCCEE
Confidence            999999864

>PRK05872 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-38  Score=280.07  Aligned_cols=240  Identities=28%  Similarity=0.374  Sum_probs=202.2

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++..  +..+..+.+|++|.++++++++++
T Consensus         2 ~~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--~~~~~~~~~Dv~d~~~v~~~~~~~   79 (296)
T PRK05872          2 PPMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--DDRVLTVVADVTDLAAMQAAAEEA   79 (296)
T ss_pred             CCCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--CCcEEEEEecCCCHHHHHHHHHHH
Confidence            345568899999999999999999999999999999999999988877776642  235777889999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      .++++++|++|||+|.....++.+. +.+++++.+++|+.+++.+++.++|.|.+++|+||++||..+..+.+++..|++
T Consensus        80 ~~~~g~id~vI~nAG~~~~~~~~~~-~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  158 (296)
T PRK05872         80 VERFGGIDVVVANAGIASGGSVAQV-DPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGMAAYCA  158 (296)
T ss_pred             HHHcCCCCEEEECCCcCCCcCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCCchHHHH
Confidence            9999999999999999776555553 458899999999999999999999999876799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh-hcCCCCCCHHHHHHHHHHhhcc
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ-ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|+++++|++.++.|+.++ |+||+++||+++|++.......    ....++..+.. .+..++.+|||+|+.+++++++
T Consensus       159 sKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~  234 (296)
T PRK05872        159 SKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD----LPAFRELRARLPWPLRRTTSVEKCAAAFVDGIER  234 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc----chhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999877 9999999999999987643211    00111111111 1223456899999999999999


Q ss_pred             CCccccCCC
Q 042560          278 GDRYLTQPS  286 (287)
Q Consensus       278 ~~~~itG~~  286 (287)
                      ++++++|+.
T Consensus       235 ~~~~i~~~~  243 (296)
T PRK05872        235 RARRVYAPR  243 (296)
T ss_pred             CCCEEEchH
Confidence            999999875

>PRK06128 oxidoreductase; Provisional

Probab=100.00  E-value=2.6e-38  Score=279.18  Aligned_cols=233  Identities=26%  Similarity=0.331  Sum_probs=194.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh--HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER--QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||++|||++++++|+++|++|+++.++.+  ..++..+.++..+ .++.++++|++|.++++++++++.+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG-RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999887543  3445555555443 4688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      .++++|++|||||..... ++.+ .+.++|++.+++|+.+++.++++++|.|++ +++||++||..+..+.++...|+++
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~Y~as  208 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIAD-ITTEQFDATFKTNVYAMFWLCKAAIPHLPP-GASIINTGSIQSYQPSPTLLDYAST  208 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHhcCc-CCEEEEECCccccCCCCCchhHHHH
Confidence            999999999999986433 3333 345789999999999999999999999875 5799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+|+++|++.++.++.++ |+||+|+||+++|++......        .++..+   ...+..++++|+|+|..+++|++
T Consensus       209 K~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~--------~~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s  280 (300)
T PRK06128        209 KAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQ--------PPEKIPDFGSETPMKRPGQPVEMAPLYVLLAS  280 (300)
T ss_pred             HHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCC--------CHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999887 999999999999998643110        112222   22344456689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       281 ~~~~~~~G~~~  291 (300)
T PRK06128        281 QESSYVTGEVF  291 (300)
T ss_pred             ccccCccCcEE
Confidence            99999999863

>PRK07856 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-38  Score=272.95  Aligned_cols=230  Identities=26%  Similarity=0.355  Sum_probs=192.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.++        .. .+.++.++++|++++++++++++.+.++
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--------~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   72 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--------TV-DGRPAEFHAADVRDPDQVAALVDAIVER   72 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--------hh-cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999998754        11 1235888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||........+ .+.+.+++.+++|+.+++.+++.+.|.|.++  .|+||++||..+..+.++...|+++
T Consensus        73 ~~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~s  151 (252)
T PRK07856         73 HGRLDVLVNNAGGSPYALAAE-ASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAA  151 (252)
T ss_pred             cCCCCEEEECCCCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHH
Confidence            999999999999876554444 3447789999999999999999999988753  3899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          201 KAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      |+++++|++.++.|++++|+||+|+||+++|++.......+     ...+......+..++.+|||+|+.+++|+++.++
T Consensus       152 K~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~~~~  226 (252)
T PRK07856        152 KAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDA-----EGIAAVAATVPLGRLATPADIAWACLFLASDLAS  226 (252)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCH-----HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccC
Confidence            99999999999999987799999999999999865322110     0011112223344556899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       227 ~i~G~~i  233 (252)
T PRK07856        227 YVSGANL  233 (252)
T ss_pred             CccCCEE
Confidence            9999864

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=100.00  E-value=2.7e-38  Score=271.25  Aligned_cols=235  Identities=27%  Similarity=0.335  Sum_probs=194.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||.+++++|+++|++|++++|+..  ++..+.+...+ .++..+++|+++.++++++++++.+.+
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSDIEAIKALVDSAVEEF   78 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999999753  33444444333 358899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++|++|||+|.....+..+ .+.+.+++++++|+.+++.++++++|.|.++  .|++|++||..+..+.+....|+++|
T Consensus        79 ~~~d~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK  157 (248)
T TIGR01832        79 GHIDILVNNAGIIRRADAEE-FSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASK  157 (248)
T ss_pred             CCCCEEEECCCCCCCCChhh-CCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCCCCCchhHHHH
Confidence            99999999999876554443 3447788999999999999999999998654  48999999999988888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++.++ |+||+|+||+++|++.+......     ...+......+..++.+|||+|+++++|+++.++
T Consensus       158 aa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~  232 (248)
T TIGR01832       158 HGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADE-----DRNAAILERIPAGRWGTPDDIGGPAVFLASSASD  232 (248)
T ss_pred             HHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccCh-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccc
Confidence            99999999999999887 99999999999999865431110     0111112223445567899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       233 ~~~G~~i  239 (248)
T TIGR01832       233 YVNGYTL  239 (248)
T ss_pred             CcCCcEE
Confidence            9999863

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK09242 tropinone reductase; Provisional

Probab=100.00  E-value=5.1e-38  Score=271.14  Aligned_cols=236  Identities=28%  Similarity=0.335  Sum_probs=201.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++||+++||||++|||++++++|+++|++|++++|+.+.+++..+++... ++.++..+.+|++++++++++++++.
T Consensus         4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   83 (257)
T PRK09242          4 RWRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE   83 (257)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999998888887777554 23478899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||+|.....+..+. +.+++++.+++|+.+++.++++++|.|++++ |++|++||..+..+.++.+.|++
T Consensus        84 ~~~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~  162 (257)
T PRK09242         84 DHWDGLHILVNNAGGNIRKAAIDY-TEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGM  162 (257)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCCcchHH
Confidence            999999999999998655444443 4578999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++++.+++.++.++.+. |+||+|.||+++|++......        .++..+.   ..+...+.+|||+++++++|+
T Consensus       163 sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~  234 (257)
T PRK09242        163 TKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS--------DPDYYEQVIERTPMRRVGEPEEVAAAVAFLC  234 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC--------ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999877 999999999999998754321        1222222   223344568999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++.+++++|+.
T Consensus       235 ~~~~~~~~g~~  245 (257)
T PRK09242        235 MPAASYITGQC  245 (257)
T ss_pred             CcccccccCCE
Confidence            99889999985

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=4.8e-38  Score=271.36  Aligned_cols=232  Identities=18%  Similarity=0.169  Sum_probs=192.7

Q ss_pred             CCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCC-----------hhHHHHHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           44 DVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARR-----------ERQLREVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        44 ~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      +++||+++||||+  +|||+++|++|+++|++|++++|+           ....++..++++..+ .++.++++|++|.+
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~D~~~~~   81 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG-VKVSSMELDLTQND   81 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC-CeEEEEEcCCCCHH
Confidence            5789999999999  599999999999999999987542           223334444555443 46889999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCC
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWL  189 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~  189 (287)
                      +++++++++.+.++++|++|||||.....+..+ .+.+++++++++|+.+++.+.++++|.|+++ +|+||++||..+..
T Consensus        82 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  160 (256)
T PRK12859         82 APKELLNKVTEQLGYPHILVNNAAYSTNNDFSN-LTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG  160 (256)
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC
Confidence            999999999999999999999999876555444 3557899999999999999999999999765 48999999999999


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHH
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA  268 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA  268 (287)
                      +.+++..|+++|+++++|+++++.+++++ |+||+|+||+++|++....          ..+......+..++.+|+|+|
T Consensus       161 ~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~~----------~~~~~~~~~~~~~~~~~~d~a  230 (256)
T PRK12859        161 PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTEE----------IKQGLLPMFPFGRIGEPKDAA  230 (256)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCHH----------HHHHHHhcCCCCCCcCHHHHH
Confidence            99999999999999999999999999887 9999999999999864310          111112222334456899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +.+.+++++.++++||+.+
T Consensus       231 ~~~~~l~s~~~~~~~G~~i  249 (256)
T PRK12859        231 RLIKFLASEEAEWITGQII  249 (256)
T ss_pred             HHHHHHhCccccCccCcEE
Confidence            9999999999999999864

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=4.5e-39  Score=282.42  Aligned_cols=239  Identities=16%  Similarity=0.104  Sum_probs=179.8

Q ss_pred             CCCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH---------HhcCCC-----eeEEEee
Q 042560           41 NAEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQA---------ELMGSP-----FALAIPA  104 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~---------~~~~~~-----~~~~~~~  104 (287)
                      ...+++||+++||||+  +|||+++|+.|+++|++|++.++.+ .++......         ....+.     ++..+.+
T Consensus         2 ~~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (299)
T PRK06300          2 LKIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDA   80 (299)
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhh
Confidence            3457789999999996  9999999999999999999987642 111110000         000000     1111223


Q ss_pred             cCCCH------------------HHHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHH
Q 042560          105 DVSKV------------------EDCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYG  164 (287)
Q Consensus       105 D~~~~------------------~~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l  164 (287)
                      |+++.                  ++++++++++.+++|++|++|||||...  ..++.+ .+.++|++.+++|+.+++.+
T Consensus        81 d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~-~~~e~~~~~~~vNl~g~~~l  159 (299)
T PRK06300         81 SFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLE-TSRKGYLAALSTSSYSFVSL  159 (299)
T ss_pred             hcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhh-CCHHHHHHHHHHHhHHHHHH
Confidence            33333                  4689999999999999999999999754  344444 45689999999999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCCCCCCCCCh-hhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCc
Q 042560          165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMS-FYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNK  241 (287)
Q Consensus       165 ~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~-~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~  241 (287)
                      +++++|.|++ +|+||+++|..+..+.|++. .|+++|+|+++|+++++.|+++ + ||||+|+||+++|++.......+
T Consensus       160 ~~a~~p~m~~-~G~ii~iss~~~~~~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~~~~~  238 (299)
T PRK06300        160 LSHFGPIMNP-GGSTISLTYLASMRAVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAIGFIE  238 (299)
T ss_pred             HHHHHHHhhc-CCeEEEEeehhhcCcCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhcccccH
Confidence            9999999975 58999999999988888875 8999999999999999999975 4 99999999999999865321000


Q ss_pred             CCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          242 NGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                           ...+......+..++.+|||||+.++||++++++|+||+.+
T Consensus       239 -----~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i  279 (299)
T PRK06300        239 -----RMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETL  279 (299)
T ss_pred             -----HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence                 01111222233445668999999999999999999999853

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=100.00  E-value=8.5e-38  Score=270.40  Aligned_cols=238  Identities=27%  Similarity=0.433  Sum_probs=197.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++||||++|||+++|++|+++|++|++++|+. +..++..++++..+ .++.++.+|++|.++++++++++.+
T Consensus         3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAG-GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC-CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999988854 45555666665543 4688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++++|++|||+|.....+..+. +.+.+++.+++|+.+++.+++.+++.|.++  +|+||++||..+..+.+++..|++
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~  160 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEM-SLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAA  160 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHH
Confidence            99999999999998766554443 447889999999999999999999999765  389999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|++++++.++.++.++ |+||+|+||+++|++....+..+     ..........+..++.+|+|+|+.+++|+++.
T Consensus       161 sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~  235 (261)
T PRK08936        161 SKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADP-----KQRADVESMIPMGYIGKPEEIAAVAAWLASSE  235 (261)
T ss_pred             HHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCH-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc
Confidence            9999999999999999887 99999999999999865322110     00111112223445668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       236 ~~~~~G~~i  244 (261)
T PRK08936        236 ASYVTGITL  244 (261)
T ss_pred             cCCccCcEE
Confidence            999999853

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-37  Score=269.25  Aligned_cols=241  Identities=27%  Similarity=0.328  Sum_probs=190.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.. .++..+++...+ .++.++.+|++|.++++++++++.+
T Consensus         3 ~~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK12823          3 NQRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG-GEALALTADLETYAGAQAAMAAAVE   80 (260)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC-CeEEEEEEeCCCHHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999853 445555554433 3588899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++++|++|||||.... .++.+ .+.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+. + +....|++
T Consensus        81 ~~~~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~-~-~~~~~Y~~  157 (260)
T PRK12823         81 AFGRIDVLINNVGGTIWAKPFEE-YEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATR-G-INRVPYSA  157 (260)
T ss_pred             HcCCCeEEEECCccccCCCChhh-CChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCcccc-C-CCCCccHH
Confidence            99999999999996532 33333 34578899999999999999999999997654 899999998764 2 34678999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc---CcCCCccchHHHHhhhhcC---CCCCCHHHHHHHHH
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL---NKNGKLEVDQEIRDVQISL---LPVQPTEECAKAIV  272 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~p~evA~~i~  272 (287)
                      +|+|+++|++.++.|++++ |+||+|+||+++|++......   ..+......++..+.....   .++++|||+|++++
T Consensus       158 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~  237 (260)
T PRK12823        158 AKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAIL  237 (260)
T ss_pred             HHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcccCCCHHHHHHHHH
Confidence            9999999999999999887 999999999999986321100   0011111122333333333   34557999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++++||+.+
T Consensus       238 ~l~s~~~~~~~g~~~  252 (260)
T PRK12823        238 FLASDEASYITGTVL  252 (260)
T ss_pred             HHcCcccccccCcEE
Confidence            999999999999753

>PRK06484 short chain dehydrogenase; Validated

Probab=100.00  E-value=3.3e-38  Score=298.37  Aligned_cols=234  Identities=26%  Similarity=0.325  Sum_probs=196.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ...+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++    +.++..+.+|++|+++++++++++.+++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~  341 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL----GDEHLSVQADITDEAAVESAFAQIQARW  341 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999999988887766544    2357788999999999999999999999


Q ss_pred             CCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.... .++.+ .+.++|++++++|+.+++.+++.++|.| +++|+||++||..+..+.+++..|+++|+
T Consensus       342 g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~Y~asKa  419 (520)
T PRK06484        342 GRLDVLVNNAGIAEVFKPSLE-QSAEDFTRVYDVNLSGAFACARAAARLM-SQGGVIVNLGSIASLLALPPRNAYCASKA  419 (520)
T ss_pred             CCCCEEEECCCCcCCCCChhh-CCHHHHHHHHHhCcHHHHHHHHHHHHHh-ccCCEEEEECchhhcCCCCCCchhHHHHH
Confidence            999999999998643 33333 3557899999999999999999999999 44689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ++++|++.++.|+.++ |+||+|+||+++|++........    ....+..++..+..++.+|||+|+.+++|+++.+++
T Consensus       420 al~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dia~~~~~l~s~~~~~  495 (520)
T PRK06484        420 AVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASG----RADFDSIRRRIPLGRLGDPEEVAEAIAFLASPAASY  495 (520)
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhcccc----HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccC
Confidence            9999999999999887 99999999999999875432110    001111222334455678999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      +||+.+
T Consensus       496 ~~G~~i  501 (520)
T PRK06484        496 VNGATL  501 (520)
T ss_pred             ccCcEE
Confidence            999864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-38  Score=269.21  Aligned_cols=240  Identities=23%  Similarity=0.268  Sum_probs=203.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||+++||++++++|+++|++|++++|+.+.+++..++++..+ .++..+.+|++|++++.++++++.
T Consensus         5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~   83 (256)
T PRK06124          5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIADEEAVAAAFARID   83 (256)
T ss_pred             cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHH
Confidence            3566899999999999999999999999999999999999888888777776544 358899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||+|.....++.+. +.+++++.+++|+.+++.+.+.+++.|.+++ |++|++||..+..+.++...|++
T Consensus        84 ~~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~  162 (256)
T PRK06124         84 AEHGRLDILVNNVGARDRRPLAEL-DDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPA  162 (256)
T ss_pred             HhcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCccHhHH
Confidence            999999999999998766555543 4478999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|++++++++.++.|+++. ++||+|+||+++|++.......+.     ..+......+...+.+|+|+++++++|++++
T Consensus       163 sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~  237 (256)
T PRK06124        163 AKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPA-----VGPWLAQRTPLGRWGRPEEIAGAAVFLASPA  237 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChH-----HHHHHHhcCCCCCCCCHHHHHHHHHHHcCcc
Confidence            9999999999999999876 999999999999998553321110     1112222223344567999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       238 ~~~~~G~~i  246 (256)
T PRK06124        238 ASYVNGHVL  246 (256)
T ss_pred             cCCcCCCEE
Confidence            999999863

>PRK08862 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5e-38  Score=266.51  Aligned_cols=218  Identities=17%  Similarity=0.167  Sum_probs=184.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++..+.+|++|+++++++++++.++
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999988888876654 35788899999999999999999999


Q ss_pred             cC-CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          123 FG-RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       123 ~~-~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++ ++|++|||+|...........+.+++.+.+++|+.+++.+++.++|.|.++  +|+||++||..+.   +++..|++
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---~~~~~Y~a  156 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---QDLTGVES  156 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC---CCcchhHH
Confidence            98 999999999865443333334557888899999999999999999999754  4899999997654   56788999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+.+|+++++.|++++ ||||+|+||+++|+....            ++.++..        -||++.+..||++  
T Consensus       157 sKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~~~~------------~~~~~~~--------~~~~~~~~~~l~~--  214 (227)
T PRK08862        157 SNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANGELD------------AVHWAEI--------QDELIRNTEYIVA--  214 (227)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCCccC------------HHHHHHH--------HHHHHhheeEEEe--
Confidence            9999999999999999887 999999999999983210            1111111        1899999999997  


Q ss_pred             CccccCCC
Q 042560          279 DRYLTQPS  286 (287)
Q Consensus       279 ~~~itG~~  286 (287)
                      +.|+||+.
T Consensus       215 ~~~~tg~~  222 (227)
T PRK08862        215 NEYFSGRV  222 (227)
T ss_pred             cccccceE
Confidence            67999974

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=100.00  E-value=8.8e-38  Score=269.68  Aligned_cols=236  Identities=19%  Similarity=0.214  Sum_probs=192.3

Q ss_pred             EEEEecCCChHHHHHHHHHHH----cCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYAR----RRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~----~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||||++|||+++|++|++    +|++|++++|+.+.+++..++++.. ++.++.++.+|++|.++++++++++.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    7999999999999988888877652 33468889999999999999999998876


Q ss_pred             CCc----cEEEEccccCCCCC--CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCCCCCC
Q 042560          124 GRL----DHLVTNAGVVPMCL--FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       124 ~~i----dvli~nag~~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~~~~~  194 (287)
                      +.+    |++|||||......  ..+..+.+.+++.+++|+.+++.+++.++|.|+++   .|+||++||..+..+.+++
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~  161 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGW  161 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCc
Confidence            643    69999999754321  22222346788999999999999999999999754   3799999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ..|+++|+|+++|++.++.|+++. |+||+|+||+++|+|.+........  ....+......+..++.+|||+|+.+++
T Consensus       162 ~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~eva~~~~~  239 (256)
T TIGR01500       162 ALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVD--PDMRKGLQELKAKGKLVDPKVSAQKLLS  239 (256)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCC--hhHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            999999999999999999999887 9999999999999987542211100  0011223334455667799999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      +++ +++++||+.+
T Consensus       240 l~~-~~~~~~G~~~  252 (256)
T TIGR01500       240 LLE-KDKFKSGAHV  252 (256)
T ss_pred             HHh-cCCcCCccee
Confidence            997 4689999864

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK05717 oxidoreductase; Validated

Probab=100.00  E-value=2.1e-37  Score=267.03  Aligned_cols=236  Identities=25%  Similarity=0.294  Sum_probs=195.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..+++||+++||||++|||+++|++|+++|++|++++|+..+.++..+++    +.++.++++|+++.++++++++++.
T Consensus         4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~   79 (255)
T PRK05717          4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL----GENAWFIAMDVADEAQVAAGVAEVL   79 (255)
T ss_pred             CCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc----CCceEEEEccCCCHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999887666554433    2358889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||..... ......+.++|++.+++|+.+++.+++.+.|.|.+++|+||++||..+..+.+++..|++
T Consensus        80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~~~Y~~  159 (255)
T PRK05717         80 GQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAA  159 (255)
T ss_pred             HHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCCcchHH
Confidence            9999999999999986432 222223447789999999999999999999999876789999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +|+|++++++.++.+++++++||+|+||+++|++.....   .  .. ..+......+..++++|+|+|+.+.+++++.+
T Consensus       160 sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~---~--~~-~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~  233 (255)
T PRK05717        160 SKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR---A--EP-LSEADHAQHPAGRVGTVEDVAAMVAWLLSRQA  233 (255)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc---c--hH-HHHHHhhcCCCCCCcCHHHHHHHHHHHcCchh
Confidence            999999999999999986699999999999999754311   0  00 11111223344566789999999999999988


Q ss_pred             ccccCCC
Q 042560          280 RYLTQPS  286 (287)
Q Consensus       280 ~~itG~~  286 (287)
                      ++++|+.
T Consensus       234 ~~~~g~~  240 (255)
T PRK05717        234 GFVTGQE  240 (255)
T ss_pred             cCccCcE
Confidence            9999974

>PRK06940 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-37  Score=270.35  Aligned_cols=225  Identities=20%  Similarity=0.273  Sum_probs=183.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++|||| +|||+++|++|+ +|++|++++|+.+++++..++++..+ .++.++++|++|+++++++++++ ++++++
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSSRESVKALAATA-QTLGPV   77 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHH-HhcCCC
Confidence            689999998 699999999996 89999999999888877777765543 36888999999999999999988 567999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC---------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP---------------  191 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~---------------  191 (287)
                      |++|||||...        ..+++++.+++|+.+++.+++.+.|.|++ +|++|+++|..+..+.               
T Consensus        78 d~li~nAG~~~--------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~  148 (275)
T PRK06940         78 TGLVHTAGVSP--------SQASPEAILKVDLYGTALVLEEFGKVIAP-GGAGVVIASQSGHRLPALTAEQERALATTPT  148 (275)
T ss_pred             CEEEECCCcCC--------chhhHHHHHHHhhHHHHHHHHHHHHHHhh-CCCEEEEEecccccCcccchhhhcccccccc
Confidence            99999999742        12568889999999999999999999975 5788999998886542               


Q ss_pred             ---------------CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh
Q 042560          192 ---------------PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ  255 (287)
Q Consensus       192 ---------------~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~  255 (287)
                                     +++..|++||+|+.++++.++.|++++ ||||+|+||+++|++....+....  ....++.. ..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~--~~~~~~~~-~~  225 (275)
T PRK06940        149 EELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPR--GDGYRNMF-AK  225 (275)
T ss_pred             ccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCc--hHHHHHHh-hh
Confidence                           246789999999999999999999887 999999999999998654221110  00011111 12


Q ss_pred             hcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          256 ISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       256 ~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .+..++++|||||+.++||+++.++|+||+.+
T Consensus       226 ~p~~r~~~peeia~~~~fL~s~~~~~itG~~i  257 (275)
T PRK06940        226 SPAGRPGTPDEIAALAEFLMGPRGSFITGSDF  257 (275)
T ss_pred             CCcccCCCHHHHHHHHHHHcCcccCcccCceE
Confidence            23445678999999999999999999999864

>PRK06841 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-37  Score=266.89  Aligned_cols=234  Identities=29%  Similarity=0.344  Sum_probs=195.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||.+++++|+++|++|++++|+.... +...++.   ..++..+++|+++.++++++++++.++
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~   86 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQLL---GGNAKGLVCDVSDSQSVEAAVAAVISA   86 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhh---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999987643 2222222   235778999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++.+.|.|.++ .|++|++||..+..+.++...|+++|
T Consensus        87 ~~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  165 (255)
T PRK06841         87 FGRIDILVNSAGVALLAPAEDV-SEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASK  165 (255)
T ss_pred             hCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCCchHHHHH
Confidence            9999999999998765544433 447788999999999999999999998765 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.+++++ |+||+|+||+++|++....+..+      ..+......+..++.+|+|+|++++++++++++
T Consensus       166 ~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~  239 (255)
T PRK06841        166 AGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGE------KGERAKKLIPAGRFAYPEEIAAAALFLASDAAA  239 (255)
T ss_pred             HHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchh------HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccc
Confidence            99999999999999887 99999999999999865432110      112222233445667899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       240 ~~~G~~i  246 (255)
T PRK06841        240 MITGENL  246 (255)
T ss_pred             CccCCEE
Confidence            9999864

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.6e-39  Score=249.92  Aligned_cols=227  Identities=25%  Similarity=0.362  Sum_probs=197.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++.|+++++||++.|||++++..|++.|++|+.+.|+++.+.++.++.    ...+.+++.|+++++.+.+++.    .
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~----p~~I~Pi~~Dls~wea~~~~l~----~   74 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET----PSLIIPIVGDLSAWEALFKLLV----P   74 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC----CcceeeeEecccHHHHHHHhhc----c
Confidence            3578999999999999999999999999999999999999998877764    2348899999999887766654    3


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      .+++|.++||||+.-..++.+.+. +++++.+++|+.+.+...|....-+..+  +|.||++||.++.++..+...||++
T Consensus        75 v~pidgLVNNAgvA~~~pf~eiT~-q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYcat  153 (245)
T KOG1207|consen   75 VFPIDGLVNNAGVATNHPFGEITQ-QSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCAT  153 (245)
T ss_pred             cCchhhhhccchhhhcchHHHHhH-HhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEeec
Confidence            478999999999998877777654 8899999999999999999977755433  4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCC---HHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP---TEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~evA~~i~~l~~  276 (287)
                      |+|+++++|.|+.|++++ ||||++.|-.+-|+|.+.-+        -++.-.+.+....|+++   .|||.++++||+|
T Consensus       154 KaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnW--------SDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLS  225 (245)
T KOG1207|consen  154 KAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNW--------SDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLS  225 (245)
T ss_pred             HHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccccc--------CCchhccchhhhCchhhhhHHHHHHhhheeeee
Confidence            999999999999999999 99999999999999987643        34445566667777774   9999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      +.+++.||+.
T Consensus       226 d~ssmttGst  235 (245)
T KOG1207|consen  226 DNSSMTTGST  235 (245)
T ss_pred             cCcCcccCce
Confidence            9999999975

>PRK07677 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-37  Score=265.33  Aligned_cols=232  Identities=30%  Similarity=0.393  Sum_probs=192.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ||+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+ .++.++++|++|+++++++++++.++++++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            6899999999999999999999999999999999888877777665543 468899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      |++|||+|.....+..+ .+.++|++++++|+.+++.++++++|.|.+.  +|+||++||..+..+.++...|+++|+|+
T Consensus        80 d~lI~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~  158 (252)
T PRK07677         80 DALINNAAGNFICPAED-LSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV  158 (252)
T ss_pred             cEEEECCCCCCCCCccc-CCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHH
Confidence            99999999765444444 3457899999999999999999999988653  48999999999998888999999999999


Q ss_pred             HHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccCC
Q 042560          205 IALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       205 ~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++.++.|+.+ + ++||+|+||+++|+......       ...++..+...   +...+.+|||+|+++.+|+++++
T Consensus       159 ~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~  231 (252)
T PRK07677        159 LAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-------WESEEAAKRTIQSVPLGRLGTPEEIAGLAYFLLSDEA  231 (252)
T ss_pred             HHHHHHHHHHhCcccCeEEEEEeecccccccccccc-------cCCHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCccc
Confidence            9999999999974 4 99999999999964322111       01122222222   33446689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      .++||+.+
T Consensus       232 ~~~~g~~~  239 (252)
T PRK07677        232 AYINGTCI  239 (252)
T ss_pred             cccCCCEE
Confidence            99999853

>PRK06139 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-37  Score=274.58  Aligned_cols=230  Identities=31%  Similarity=0.391  Sum_probs=195.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+.+++..++++..+ .++.++.+|++|.++++++++++.+.
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999998888887654 36888899999999999999999998


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|++++ |+||+++|..+..+.|+++.|++||
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~-~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~~~Y~asK  160 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEET-PIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASK  160 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCchhHHHHH
Confidence            8999999999998877666554 4578999999999999999999999998754 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC-
Q 042560          202 AAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG-  278 (287)
Q Consensus       202 aal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~-  278 (287)
                      +|+.+|+++++.|+.+ . |+|++|+||+++|++........          .+...+..++.+||++|+.+++++..+ 
T Consensus       161 aal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~----------~~~~~~~~~~~~pe~vA~~il~~~~~~~  230 (330)
T PRK06139        161 FGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYT----------GRRLTPPPPVYDPRRVAKAVVRLADRPR  230 (330)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccccc----------cccccCCCCCCCHHHHHHHHHHHHhCCC
Confidence            9999999999999976 3 99999999999999864311000          011122345678999999999999754 


Q ss_pred             CccccC
Q 042560          279 DRYLTQ  284 (287)
Q Consensus       279 ~~~itG  284 (287)
                      ..+..|
T Consensus       231 ~~~~~g  236 (330)
T PRK06139        231 ATTTVG  236 (330)
T ss_pred             CEEEcC
Confidence            344444

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-37  Score=266.45  Aligned_cols=240  Identities=24%  Similarity=0.305  Sum_probs=197.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++.+|+++||||++|||+++|+.|+++|++|++++|+.+..++..+++.    .++..+.+|++|+++++++++++.+.
T Consensus         2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (257)
T PRK07067          2 MRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG----PAAIAVSLDVTRQDSIDRIVAAAVER   77 (257)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999888777665542    35888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++++++.|.++  +|++|++||..+..+.++...|++|
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  156 (257)
T PRK07067         78 FGGIDILFNNAALFDMAPILDI-SRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCAT  156 (257)
T ss_pred             cCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhh
Confidence            9999999999998765544443 447899999999999999999999988654  3799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcC-CCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKN-GKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++++++++.++.|+.++ |+||+|.||+++|++......... .....+.+..+..   .+...+.+|+|+|+++++|+
T Consensus       157 K~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  236 (257)
T PRK07067        157 KAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLA  236 (257)
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHh
Confidence            999999999999999887 999999999999998653210000 0000111222222   23344557999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      ++.++++||+.+
T Consensus       237 s~~~~~~~g~~~  248 (257)
T PRK07067        237 SADADYIVAQTY  248 (257)
T ss_pred             CcccccccCcEE
Confidence            999999999863

>PRK08226 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-37  Score=266.98  Aligned_cols=239  Identities=27%  Similarity=0.349  Sum_probs=194.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.. .++..+++...+ .++.++.+|++++++++++++++.+++
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~   80 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRG-HRCTAVVADVRDPASVAAAIKRAKEKE   80 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            568999999999999999999999999999999999875 344444444333 367889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCC-CCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAG-WLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~-~~~~~~~~~Y~asK  201 (287)
                      +++|++|||+|.....++.+. +.+++++.+++|+.+++.+.+.++|.|.+. .+++|++||..+ ..+.+++..|+++|
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK  159 (263)
T PRK08226         81 GRIDILVNNAGVCRLGSFLDM-SDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTK  159 (263)
T ss_pred             CCCCEEEECCCcCCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCCcchHHHHH
Confidence            999999999998766555554 347788899999999999999999988654 489999999887 45678889999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++++++++.++.++.+. |+||+|.||+++|++.+.........  ..++..+...   +..++.+|+|+|+.++||+++
T Consensus       160 ~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~  237 (263)
T PRK08226        160 AAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPE--DPESVLTEMAKAIPLRRLADPLEVGELAAFLASD  237 (263)
T ss_pred             HHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCC--CcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCc
Confidence            99999999999999877 99999999999999876532111110  1122233332   333456899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       238 ~~~~~~g~~i  247 (263)
T PRK08226        238 ESSYLTGTQN  247 (263)
T ss_pred             hhcCCcCceE
Confidence            9999999864

>PRK07890 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-37  Score=266.62  Aligned_cols=243  Identities=30%  Similarity=0.427  Sum_probs=200.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |.+++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+ .++..+.+|++|+++++++++++.++
T Consensus         1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999988887777775543 35889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||+|...........+.+++++.+++|+.+++.+++++.+.|.+++|+||++||..+..+.+++..|+++|+
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~  159 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKG  159 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCcchhHHHHH
Confidence            99999999999986542222233557899999999999999999999999877789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHHhhh---hcCCCCCCHHHHHHHHHHhhcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRDVQ---ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +++.+++.++.++++. |++++++||++.|++............ ...++..+..   .+..++.+|||+|+++++++++
T Consensus       160 a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~  239 (258)
T PRK07890        160 ALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASD  239 (258)
T ss_pred             HHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCH
Confidence            9999999999999877 999999999999997654322111100 1112322222   2334456799999999999998


Q ss_pred             CCccccCCC
Q 042560          278 GDRYLTQPS  286 (287)
Q Consensus       278 ~~~~itG~~  286 (287)
                      .++++||+.
T Consensus       240 ~~~~~~G~~  248 (258)
T PRK07890        240 LARAITGQT  248 (258)
T ss_pred             hhhCccCcE
Confidence            888999985

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-38  Score=271.35  Aligned_cols=237  Identities=24%  Similarity=0.282  Sum_probs=190.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++++....+.          .++..+++|++|+++++++++++.
T Consensus         3 ~~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~   72 (266)
T PRK06171          3 DWLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH----------ENYQFVPTDVSSAEEVNHTVAEII   72 (266)
T ss_pred             ccccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc----------CceEEEEccCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999998765321          257789999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCC--------CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFE--------DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP  191 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~  191 (287)
                      ++++++|++|||||........        ...+.++|++++++|+.+++.+++++.+.|.+++ |+||++||..+..+.
T Consensus        73 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~  152 (266)
T PRK06171         73 EKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS  152 (266)
T ss_pred             HHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC
Confidence            9999999999999986443221        1134467889999999999999999999997654 899999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCccc-CCCcCCcccCcCC--CccchHHHHhh-----hhcCCCCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIE-SEITGGKFLNKNG--KLEVDQEIRDV-----QISLLPVQ  262 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~-t~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~  262 (287)
                      ++...|+++|++++++++.++.|++++ |+||+|+||+++ |++........-.  .....++..+.     ..+..++.
T Consensus       153 ~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  232 (266)
T PRK06171        153 EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSG  232 (266)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcccccccCCCCC
Confidence            999999999999999999999999887 999999999997 6654321110000  00011222222     22344556


Q ss_pred             CHHHHHHHHHHhhccCCccccCCCC
Q 042560          263 PTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|||||+++.||+++.++|+||+.+
T Consensus       233 ~~~eva~~~~fl~s~~~~~itG~~i  257 (266)
T PRK06171        233 KLSEVADLVCYLLSDRASYITGVTT  257 (266)
T ss_pred             CHHHhhhheeeeeccccccceeeEE
Confidence            8999999999999999999999864

>PRK08278 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3e-37  Score=268.91  Aligned_cols=229  Identities=25%  Similarity=0.302  Sum_probs=193.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-------HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      |++++|+++||||++|||+++++.|+++|++|++++|+.+.       +++..+++...+ .++.++.+|+++.+++.++
T Consensus         2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG-GQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHH
Confidence            45789999999999999999999999999999999997653       444555555444 3688999999999999999


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC--C
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP--P  192 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~--~  192 (287)
                      ++++.+.++++|++|||+|.....+..+ .+.+++++.+++|+.+++.++++++|.|.+++ |+++++||..+..+.  +
T Consensus        81 ~~~~~~~~g~id~li~~ag~~~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~  159 (273)
T PRK08278         81 VAKAVERFGGIDICVNNASAINLTGTED-TPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWFA  159 (273)
T ss_pred             HHHHHHHhCCCCEEEECCCCcCCCCccc-CCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccccC
Confidence            9999999999999999999876655444 34578899999999999999999999997654 899999999888776  8


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCC-cccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG-LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~  270 (287)
                      ++..|+++|+++++++++++.|++++ |+||+|+|| +++|++........              ....++.+|+++|+.
T Consensus       160 ~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~~~~--------------~~~~~~~~p~~va~~  225 (273)
T PRK08278        160 PHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLLGGD--------------EAMRRSRTPEIMADA  225 (273)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhccccc--------------ccccccCCHHHHHHH
Confidence            88999999999999999999999987 999999999 68998655422110              112245689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++++++.++++||+.+
T Consensus       226 ~~~l~~~~~~~~~G~~~  242 (273)
T PRK08278        226 AYEILSRPAREFTGNFL  242 (273)
T ss_pred             HHHHhcCccccceeEEE
Confidence            99999999999999753

>PRK06949 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.6e-37  Score=263.06  Aligned_cols=237  Identities=26%  Similarity=0.355  Sum_probs=201.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++..+.+|+++.++++++++++.++
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTDYQSIKAAVAHAETE   83 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            34789999999999999999999999999999999999998888777765544 35889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---------CCEEEEEcCCCCCCCCCC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---------KGKIIVVASAAGWLPPPR  193 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---------~g~iv~isS~~~~~~~~~  193 (287)
                      ++++|++|||+|.....++.+. +.++++.++++|+.+++.++++++|.|.++         +|++|++||..+..+.+.
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~  162 (258)
T PRK06949         84 AGTIDILVNNSGVSTTQKLVDV-TPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQ  162 (258)
T ss_pred             cCCCCEEEECCCCCCCCCcccC-CHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCC
Confidence            9999999999998765544443 346788999999999999999999988644         379999999999888888


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      ...|+++|++++.+++.++.++++. |+|++|+||+++|++....+..+      .........+..++++|+|+|+.++
T Consensus       163 ~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~  236 (258)
T PRK06949        163 IGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETE------QGQKLVSMLPRKRVGKPEDLDGLLL  236 (258)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChH------HHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9999999999999999999999877 99999999999999876432110      1122233445566778999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||+++.++++||+.+
T Consensus       237 ~l~~~~~~~~~G~~i  251 (258)
T PRK06949        237 LLAADESQFINGAII  251 (258)
T ss_pred             HHhChhhcCCCCcEE
Confidence            999999999999864

>PRK12743 oxidoreductase; Provisional

Probab=100.00  E-value=9.5e-37  Score=263.18  Aligned_cols=233  Identities=25%  Similarity=0.286  Sum_probs=194.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++|+++||||++|||++++++|+++|++|+++.+ +.+..++..++++..+ .++..+.+|++|.++++++++++.++++
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG-VRAEIRQLDLSDLPEGAQALDKLIQRLG   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999998865 5556666666665544 4688999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++|++|||+|........+ .+.+++++++++|+.+++.+.+++.+.|.++  +|++|++||..+..+.++...|+++|+
T Consensus        80 ~id~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~  158 (256)
T PRK12743         80 RIDVLVNNAGAMTKAPFLD-MDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKH  158 (256)
T ss_pred             CCCEEEECCCCCCCCChhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHH
Confidence            9999999999876554444 3457899999999999999999999998654  379999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.++.++ |+||+|+||+++|++.....  .     ..........+...+.+|+|+|+++++++++.+++
T Consensus       159 a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~  231 (256)
T PRK12743        159 ALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--S-----DVKPDSRPGIPLGRPGDTHEIASLVAWLCSEGASY  231 (256)
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--h-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccC
Confidence            9999999999999887 99999999999999864310  0     00111112223344568999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      +||+.+
T Consensus       232 ~~G~~~  237 (256)
T PRK12743        232 TTGQSL  237 (256)
T ss_pred             cCCcEE
Confidence            999753

>PRK08628 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.2e-37  Score=264.43  Aligned_cols=236  Identities=24%  Similarity=0.296  Sum_probs=195.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+.. +..+++...+ .++.++++|+++.++++++++++.+.
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQ-PRAEFVQVDLTDDAQCRDAVEQTVAK   80 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999988776 5555555444 35889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||+|......... .. +++++.+++|+.+++.+.+.++|.|+++.|++|++||..+..+.++...|+++|+
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~-~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~  158 (258)
T PRK08628         81 FGRIDGLVNNAGVNDGVGLEA-GR-EAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKG  158 (258)
T ss_pred             cCCCCEEEECCcccCCCcccC-CH-HHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCCchhHHHHH
Confidence            999999999999765443322 33 7789999999999999999999999876789999999999999899999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cC-CCCCCHHHHHHHHHHhhcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SL-LPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~p~evA~~i~~l~~~  277 (287)
                      +++++++.++.|+.+. |+||+|+||.++|++.........    ..++..+...   +. .++.+|+|+|+.+++++++
T Consensus       159 a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  234 (258)
T PRK08628        159 AQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFD----DPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSE  234 (258)
T ss_pred             HHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhcc----CHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhCh
Confidence            9999999999999877 999999999999997643221111    0111111111   21 2466899999999999999


Q ss_pred             CCccccCCC
Q 042560          278 GDRYLTQPS  286 (287)
Q Consensus       278 ~~~~itG~~  286 (287)
                      .+.+++|+.
T Consensus       235 ~~~~~~g~~  243 (258)
T PRK08628        235 RSSHTTGQW  243 (258)
T ss_pred             hhccccCce
Confidence            989999875

>PRK06483 dihydromonapterin reductase; Provisional

Probab=100.00  E-value=8.8e-37  Score=260.18  Aligned_cols=220  Identities=20%  Similarity=0.135  Sum_probs=181.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||++++++|+++|++|++++|+.++..   +.++..   .+.++.+|++|.++++++++++.++++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   75 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA---GAQCIQADFSTNAGIMAFIDELKQHTDGL   75 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc---CCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence            689999999999999999999999999999999876543   222222   25678999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC---CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~---g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      |++|||||........+ .+.++|++++++|+.+++.+++.++|.|++++   |+||++||..+..+.+++..|+++|++
T Consensus        76 d~lv~~ag~~~~~~~~~-~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaa  154 (236)
T PRK06483         76 RAIIHNASDWLAEKPGA-PLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAA  154 (236)
T ss_pred             cEEEECCccccCCCcCc-cCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHH
Confidence            99999999865443333 34578999999999999999999999997653   799999999998888999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccCCc
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +++|++.++.|++++||||+|+||++.|+...            .++..+...   +..+..+|||+|+.+.||++  ++
T Consensus       155 l~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~--~~  220 (236)
T PRK06483        155 LDNMTLSFAAKLAPEVKVNSIAPALILFNEGD------------DAAYRQKALAKSLLKIEPGEEEIIDLVDYLLT--SC  220 (236)
T ss_pred             HHHHHHHHHHHHCCCcEEEEEccCceecCCCC------------CHHHHHHHhccCccccCCCHHHHHHHHHHHhc--CC
Confidence            99999999999987799999999999875321            011111122   23334579999999999997  68


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       221 ~~~G~~i  227 (236)
T PRK06483        221 YVTGRSL  227 (236)
T ss_pred             CcCCcEE
Confidence            9999863

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.3e-36  Score=261.33  Aligned_cols=231  Identities=26%  Similarity=0.323  Sum_probs=187.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||++|||++++++|+++|++|+++.+ +.+..++...+.    +.++.++.+|++|+++++++++++.+
T Consensus         1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (253)
T PRK08642          1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL----GDRAIALQADVTDREQVQAMFATATE   76 (253)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999988765 444444443332    23688899999999999999999999


Q ss_pred             hcCC-ccEEEEccccCCC------CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC
Q 042560          122 HFGR-LDHLVTNAGVVPM------CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR  193 (287)
Q Consensus       122 ~~~~-idvli~nag~~~~------~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~  193 (287)
                      .+++ +|++|||+|....      .+..+ .+.+++++.+++|+.+++.+++.++|.|.+++ |++|++||..+..+.++
T Consensus        77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~  155 (253)
T PRK08642         77 HFGKPITTVVNNALADFSFDGDARKKADD-ITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVP  155 (253)
T ss_pred             HhCCCCeEEEECCCccccccccCCCCccc-CCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCC
Confidence            8887 9999999986421      11222 34467888999999999999999999986544 89999999888777777


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAK  269 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~  269 (287)
                      +..|+++|+|++++++.++++++++ |+||+|+||+++|++.....         .++..+   ...+..++.+|+|+|+
T Consensus       156 ~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~va~  226 (253)
T PRK08642        156 YHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT---------PDEVFDLIAATTPLRKVTTPQEFAD  226 (253)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC---------CHHHHHHHHhcCCcCCCCCHHHHHH
Confidence            8899999999999999999999887 99999999999998654211         122222   2223345678999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      ++.+|+++.++++||+.+
T Consensus       227 ~~~~l~~~~~~~~~G~~~  244 (253)
T PRK08642        227 AVLFFASPWARAVTGQNL  244 (253)
T ss_pred             HHHHHcCchhcCccCCEE
Confidence            999999999999999864

>PRK07814 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-36  Score=262.81  Aligned_cols=240  Identities=26%  Similarity=0.314  Sum_probs=200.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++++++||||++|||+++++.|+++|++|++++|+.++.++..+.+...+ .++.++.+|+++++++.++++++.
T Consensus         4 ~~~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   82 (263)
T PRK07814          4 DRFRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAV   82 (263)
T ss_pred             ccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999999888887777775543 358889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +.++++|++|||||........+ .+.+++++++++|+.+++.+.+++.|.|.+.  .|++|++||..+..+.++...|+
T Consensus        83 ~~~~~id~vi~~Ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~  161 (263)
T PRK07814         83 EAFGRLDIVVNNVGGTMPNPLLS-TSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYG  161 (263)
T ss_pred             HHcCCCCEEEECCCCCCCCChhh-CCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhH
Confidence            99999999999999866554444 3457889999999999999999999998653  48999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          199 ASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++|++++++++.++.++.+.++||+|+||+++|++.......+    . ..+..+...+..++.+|||+|+.+++++++.
T Consensus       162 ~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~  236 (263)
T PRK07814        162 TAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAAND----E-LRAPMEKATPLRRLGDPEDIAAAAVYLASPA  236 (263)
T ss_pred             HHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCH----H-HHHHHHhcCCCCCCcCHHHHHHHHHHHcCcc
Confidence            9999999999999999987799999999999999764311000    0 0111122223445668999999999999998


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +.+++|+.+
T Consensus       237 ~~~~~g~~~  245 (263)
T PRK07814        237 GSYLTGKTL  245 (263)
T ss_pred             ccCcCCCEE
Confidence            899999864

>PRK06523 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.2e-37  Score=264.70  Aligned_cols=234  Identities=24%  Similarity=0.256  Sum_probs=188.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++||+++||||++|||++++++|+++|++|++++|+....          ...++.++++|++|+++++++++++.+.
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~~   74 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD----------LPEGVEFVAADLTTAEGCAAVARAVLER   74 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh----------cCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999986531          1235788999999999999999999999


Q ss_pred             cCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCC-CChhhh
Q 042560          123 FGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPP-RMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~-~~~~Y~  198 (287)
                      ++++|++|||||...  ..++.+ .+.+++++.+++|+.+++.+.++++|.|++++ |++|++||..+..+.+ +...|+
T Consensus        75 ~~~id~vi~~ag~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~~Y~  153 (260)
T PRK06523         75 LGGVDILVHVLGGSSAPAGGFAA-LTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYA  153 (260)
T ss_pred             cCCCCEEEECCcccccCCCCccc-CCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCcchhH
Confidence            999999999999753  222333 34477899999999999999999999997654 8999999999988765 789999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcC-CCccchHHHHhh------hhcCCCCCCHHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKN-GKLEVDQEIRDV------QISLLPVQPTEECAKA  270 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~p~evA~~  270 (287)
                      ++|++++++++.++.+++++ |+||+|+||+++|++......... ......++..+.      ..+..++.+|+|+|+.
T Consensus       154 ~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~  233 (260)
T PRK06523        154 AAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAEL  233 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHHH
Confidence            99999999999999999887 999999999999998654221100 000011222111      1233345579999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++|++++++++||+.+
T Consensus       234 ~~~l~s~~~~~~~G~~~  250 (260)
T PRK06523        234 IAFLASDRAASITGTEY  250 (260)
T ss_pred             HHHHhCcccccccCceE
Confidence            99999999999999864

>PRK05599 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=260.83  Aligned_cols=210  Identities=20%  Similarity=0.279  Sum_probs=181.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||++|||+++|++|+ +|++|++++|+.++++++.++++..+...+.++++|++|.++++++++++.+.+|++|
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999 5999999999999999888888766544578899999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||+|.....+..+ .+.+.+.+.+++|+.+++.+.+.++|.|.++  +|+||++||..+..+.+++..|+++|+|++
T Consensus        80 ~lv~nag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~  158 (246)
T PRK05599         80 LAVVAFGILGDQERAE-TDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLD  158 (246)
T ss_pred             EEEEecCcCCCchhhh-cCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHH
Confidence            9999999865543333 2335567788999999999999999999754  489999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC-CCCHHHHHHHHHHhhccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~evA~~i~~l~~~~  278 (287)
                      +|++.++.|+++. |+||+|+||+++|++.....                  + .+ ..+|||+|+.+++++++.
T Consensus       159 ~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~------------------~-~~~~~~pe~~a~~~~~~~~~~  214 (246)
T PRK05599        159 AFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMK------------------P-APMSVYPRDVAAAVVSAITSS  214 (246)
T ss_pred             HHHHHHHHHhcCCCceEEEecCCcccchhhcCCC------------------C-CCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999887 99999999999999864321                  0 01 247999999999999875

>PRK07576 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-36  Score=263.03  Aligned_cols=239  Identities=24%  Similarity=0.291  Sum_probs=196.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|++++|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++...+ .++.++.+|++|+++++++++++.+
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIAD   82 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999888777766665543 3578889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      .++++|++|||+|.....++.+ .+.+++++.+++|+.+++.++++++|.|++++|+||++||..+..+.+++..|+++|
T Consensus        83 ~~~~iD~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~~~~Y~asK  161 (264)
T PRK07576         83 EFGPIDVLVSGAAGNFPAPAAG-MSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQAHVCAAK  161 (264)
T ss_pred             HcCCCCEEEECCCCCCCCcccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCCccHHHHHH
Confidence            9999999999998765444443 344778899999999999999999999987678999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++|++.++.++.++ |+|++|+||+++ |+........     ....+......+...+.+|+|+|+.+++++++.+
T Consensus       162 ~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~  236 (264)
T PRK07576        162 AGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPS-----PELQAAVAQSVPLKRNGTKQDIANAALFLASDMA  236 (264)
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccC-----HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhh
Confidence            99999999999999877 999999999997 5533221110     0011111122233345579999999999999988


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      ++++|+.+
T Consensus       237 ~~~~G~~~  244 (264)
T PRK07576        237 SYITGVVL  244 (264)
T ss_pred             cCccCCEE
Confidence            99999863

>PRK06701 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-36  Score=265.42  Aligned_cols=239  Identities=29%  Similarity=0.316  Sum_probs=196.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ..+++++|+++||||++|||.+++++|+++|++|++++|+.. ..++..+.++..+ .++.++.+|++|.++++++++++
T Consensus        40 ~~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         40 GSGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHH
Confidence            346888999999999999999999999999999999999864 3455555554433 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      .++++++|++|||||...........+.+++.+.+++|+.+++.+++++++.|++ +|++|++||..+..+.++...|++
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~-~g~iV~isS~~~~~~~~~~~~Y~~  197 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ-GSAIINTGSITGYEGNETLIDYSA  197 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh-CCeEEEEecccccCCCCCcchhHH
Confidence            9999999999999998654322233455788999999999999999999999864 589999999999999899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+++++++++.++.+. |+|++|.||+++|++......      ....+......+...+.+|+|+|+++++++++.
T Consensus       198 sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~------~~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~  271 (290)
T PRK06701        198 TKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD------EEKVSQFGSNTPMQRPGQPEELAPAYVFLASPD  271 (290)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC------HHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcc
Confidence            9999999999999999877 999999999999997654211      000111122223444567999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +.++||+.|
T Consensus       272 ~~~~~G~~i  280 (290)
T PRK06701        272 SSYITGQML  280 (290)
T ss_pred             cCCccCcEE
Confidence            999999764

>PRK05876 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-36  Score=263.97  Aligned_cols=238  Identities=24%  Similarity=0.332  Sum_probs=194.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.++++++++++.+++
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999999999988888877776544 368889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++|++|||||.....++.+. +.+++++++++|+.+++.+++.++|.|.++  +|+||++||..+..+.++...|+++|
T Consensus        82 g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  160 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEM-THDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAK  160 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHHH
Confidence            999999999998766655553 457899999999999999999999999765  48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHH--HHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQE--IRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +++++|++.++.|++++ |+|++|+||+++|++.................  ............+|+|+|+.++..+..+
T Consensus       161 ~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~  240 (275)
T PRK05876        161 YGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN  240 (275)
T ss_pred             HHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHHHHHHHHHHHHHcC
Confidence            99999999999999877 99999999999999865421111000000000  0000011123457999999999999876


Q ss_pred             Ccccc
Q 042560          279 DRYLT  283 (287)
Q Consensus       279 ~~~it  283 (287)
                      ..++.
T Consensus       241 ~~~~~  245 (275)
T PRK05876        241 RLYVL  245 (275)
T ss_pred             CeEEe
Confidence            65543

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=8.4e-38  Score=253.08  Aligned_cols=224  Identities=25%  Similarity=0.398  Sum_probs=192.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+++||.+++||+.||||++.+++|+++|..+.++..+.+..+..++.-...+..++.++++|+++..++++.++++.++
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~   80 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT   80 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999888888766655545566778999999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC----CEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK----GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~----g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +|.+|++|||||+..         ..+|++.+.+|+.|.+..+...+|+|.+++    |-|||+||..|..|.|..+.|+
T Consensus        81 fg~iDIlINgAGi~~---------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~  151 (261)
T KOG4169|consen   81 FGTIDILINGAGILD---------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYA  151 (261)
T ss_pred             hCceEEEEccccccc---------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhh
Confidence            999999999999843         367999999999999999999999997653    7899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHH--hCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          199 ASKAAKIALYETLRVE--FGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       199 asKaal~~~~~~la~e--~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +||+++.+|+|++|..  |.+. |+++++|||+++|++.+.+-.. ...+...+. .....+..|.++|.++|..++.++
T Consensus       152 AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~-~~~~e~~~~-~~~~l~~~~~q~~~~~a~~~v~ai  229 (261)
T KOG4169|consen  152 ASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDAS-GGYLEYSDS-IKEALERAPKQSPACCAINIVNAI  229 (261)
T ss_pred             hcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhc-CCcccccHH-HHHHHHHcccCCHHHHHHHHHHHH
Confidence            9999999999999976  4555 9999999999999998765322 222222233 334446667888999999999999


Q ss_pred             cc
Q 042560          276 CR  277 (287)
Q Consensus       276 ~~  277 (287)
                      +.
T Consensus       230 E~  231 (261)
T KOG4169|consen  230 EY  231 (261)
T ss_pred             hh
Confidence            76

>PRK06500 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-36  Score=259.88  Aligned_cols=234  Identities=28%  Similarity=0.362  Sum_probs=194.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++    +.++.++++|++|.+++.++++++.+.+
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL----GESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999999999987766655444    2357889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||+|.....+..+ .+.+++++.+++|+.+++.+++++.|.|.+ ++++|+++|..+..+.++...|+++|++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~i~~~S~~~~~~~~~~~~Y~~sK~a  156 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLED-WDEAMFDRSFNTNVKGPYFLIQALLPLLAN-PASIVLNGSINAHIGMPNSSVYAASKAA  156 (249)
T ss_pred             CCCCEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCEEEEEechHhccCCCCccHHHHHHHH
Confidence            99999999999876554444 345788999999999999999999999864 5799999999999899999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++++++.|+.+. |++++|+||+++|++......... .   .++..+.   ..+...+++|+|+|+++++++++++
T Consensus       157 ~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~  232 (249)
T PRK06500        157 LLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEA-T---LDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDES  232 (249)
T ss_pred             HHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCcc-c---hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccc
Confidence            999999999999877 999999999999998653211111 0   1112222   2233345689999999999999989


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      .|++|+.+
T Consensus       233 ~~~~g~~i  240 (249)
T PRK06500        233 AFIVGSEI  240 (249)
T ss_pred             cCccCCeE
Confidence            99999864

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.7e-36  Score=268.31  Aligned_cols=233  Identities=22%  Similarity=0.307  Sum_probs=193.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +..++++|+++||||++|||+++|++|+++|++|++++++. ...++..++++..+ .++..+.+|++|.++++++++++
T Consensus         6 ~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d~~~~~~~~~~~   84 (306)
T PRK07792          6 NTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQRATADELVATA   84 (306)
T ss_pred             CCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999998853 45666667776544 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--------CCEEEEEcCCCCCCCC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--------KGKIIVVASAAGWLPP  191 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--------~g~iv~isS~~~~~~~  191 (287)
                      .+ ++++|++|||||......+.+. +.++|++.+++|+.+++.+++++.|.|+++        .|+||++||..+..+.
T Consensus        85 ~~-~g~iD~li~nAG~~~~~~~~~~-~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  162 (306)
T PRK07792         85 VG-LGGLDIVVNNAGITRDRMLFNM-SDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP  162 (306)
T ss_pred             HH-hCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC
Confidence            98 9999999999998766554443 447889999999999999999999988642        2799999999999898


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~  270 (287)
                      ++...|+++|+|+++|++.++.|+.++ |+||+|+||. .|+|....+...       ++...   ......+||++|+.
T Consensus       163 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~~~~~~~-------~~~~~---~~~~~~~pe~va~~  231 (306)
T PRK07792        163 VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTADVFGDA-------PDVEA---GGIDPLSPEHVVPL  231 (306)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhhhhcccc-------chhhh---hccCCCCHHHHHHH
Confidence            999999999999999999999999887 9999999994 888765432111       11000   11122379999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +.+|+++.++++||+.+
T Consensus       232 v~~L~s~~~~~~tG~~~  248 (306)
T PRK07792        232 VQFLASPAAAEVNGQVF  248 (306)
T ss_pred             HHHHcCccccCCCCCEE
Confidence            99999999999999864

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=100.00  E-value=2e-36  Score=260.19  Aligned_cols=236  Identities=24%  Similarity=0.297  Sum_probs=195.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++++|+++||||+++||++++++|+++|++|++++|+.         .... +.++..+++|++|+++++++++++.
T Consensus         2 ~~~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   71 (252)
T PRK08220          2 NAMDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQE-DYPFATFVLDVSDAAAVAQVCQRLL   71 (252)
T ss_pred             CccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhhc-CCceEEEEecCCCHHHHHHHHHHHH
Confidence            34778999999999999999999999999999999999986         1111 2358889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++++.|.|++++ |++|++||..+..+.++...|++
T Consensus        72 ~~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~  150 (252)
T PRK08220         72 AETGPLDVLVNAAGILRMGATDSL-SDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGA  150 (252)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCCCchhHH
Confidence            999999999999998766554443 4478899999999999999999999997654 89999999999989889999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccch---HHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVD---QEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++++++++.+++|+.+. |+||++.||+++|++....+..........   .+..+...+..++.+|+|+|+++++|+
T Consensus       151 sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  230 (252)
T PRK08220        151 SKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLA  230 (252)
T ss_pred             HHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHh
Confidence            9999999999999999877 999999999999998754432221111111   122223334455678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      ++.++++||+.+
T Consensus       231 ~~~~~~~~g~~i  242 (252)
T PRK08220        231 SDLASHITLQDI  242 (252)
T ss_pred             cchhcCccCcEE
Confidence            999999999864

>PRK08703 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-36  Score=256.97  Aligned_cols=229  Identities=25%  Similarity=0.271  Sum_probs=193.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC--HHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK--VEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~  121 (287)
                      .+++|+++||||++|||+++++.|+++|++|++++|+.+..++..+++...+...+..+.+|+++  .+++.++++++.+
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999988888777765544457788899976  5788999999988


Q ss_pred             hc-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      .+ +++|++|||||...........+++++++.+++|+.+++.++++++|.|.+.+ ++++++||..+..+.+++..|++
T Consensus        83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~  162 (239)
T PRK08703         83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGA  162 (239)
T ss_pred             HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCccchHH
Confidence            87 88999999999764322223345577889999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC--eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          200 SKAAKIALYETLRVEFGGD--IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~--i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|++++++++.++.|+.+.  |+|++|.||+++|++..+......               .....+|+|+++.+++++++
T Consensus       163 sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~  227 (239)
T PRK08703        163 SKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEA---------------KSERKSYGDVLPAFVWWASA  227 (239)
T ss_pred             hHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCCCCC---------------ccccCCHHHHHHHHHHHhCc
Confidence            9999999999999999763  999999999999998654321110               01134799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       228 ~~~~~~g~~~  237 (239)
T PRK08703        228 ESKGRSGEIV  237 (239)
T ss_pred             cccCcCCeEe
Confidence            9999999864

>PLN02780 ketoreductase/ oxidoreductase

Probab=100.00  E-value=8.7e-36  Score=264.93  Aligned_cols=213  Identities=26%  Similarity=0.341  Sum_probs=172.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..|++++||||++|||+++|++|+++|++|++++|+.+++++..++++... +.++..+.+|+++  ++.+.++++.+..
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~~~  128 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKETI  128 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHHHh
Confidence            469999999999999999999999999999999999999999888886543 3468888999985  2233334444443


Q ss_pred             C--CccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCC-C-CCCChh
Q 042560          124 G--RLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWL-P-PPRMSF  196 (287)
Q Consensus       124 ~--~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~-~-~~~~~~  196 (287)
                      +  .+|++|||||....  ..+.+ .+.+++++.+++|+.+++.+++.++|.|.++ +|+||++||..+.. + .|+.+.
T Consensus       129 ~~~didilVnnAG~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~~~~  207 (320)
T PLN02780        129 EGLDVGVLINNVGVSYPYARFFHE-VDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAV  207 (320)
T ss_pred             cCCCccEEEEecCcCCCCCccccc-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCccchH
Confidence            4  46699999998753  22333 3557889999999999999999999998765 49999999999864 3 588999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+++++|+++++.|++++ |+|++|+||+++|+|....   +               ......+||++|+.++..+
T Consensus       208 Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~---~---------------~~~~~~~p~~~A~~~~~~~  269 (320)
T PLN02780        208 YAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIR---R---------------SSFLVPSSDGYARAALRWV  269 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccccc---C---------------CCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999887 9999999999999986520   0               0112347999999999998


Q ss_pred             ccC
Q 042560          276 CRG  278 (287)
Q Consensus       276 ~~~  278 (287)
                      ...
T Consensus       270 ~~~  272 (320)
T PLN02780        270 GYE  272 (320)
T ss_pred             CCC
Confidence            654

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=100.00  E-value=3.5e-36  Score=257.83  Aligned_cols=234  Identities=18%  Similarity=0.222  Sum_probs=193.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |++|+++||||++|||++++++|+++|++|++.. ++....++..+++...+ .++..+.+|++|.++++++++++.+.+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALG-FDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999988854 45555555555554443 357888999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|.....+..+. +.+++++.+++|+.+++.+.++++|.|.+++ |++|++||..+..+.++...|+++|+
T Consensus        80 ~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~y~~sK~  158 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKM-TREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKA  158 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCChhHHHHHH
Confidence            999999999998765444443 4578999999999999999999999987655 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.++.+. +++|+|+||+++|++.....  +    . ..+......+..++.+|+|+++.+++|+++.+++
T Consensus       159 a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~  231 (246)
T PRK12938        159 GIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIR--P----D-VLEKIVATIPVRRLGSPDEIGSIVAWLASEESGF  231 (246)
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcC--h----H-HHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCC
Confidence            9999999999999877 99999999999999865321  0    0 0111112233445678999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      ++|+.+
T Consensus       232 ~~g~~~  237 (246)
T PRK12938        232 STGADF  237 (246)
T ss_pred             ccCcEE
Confidence            999853

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-36  Score=258.73  Aligned_cols=240  Identities=19%  Similarity=0.222  Sum_probs=196.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|+++||||+++||.+++++|+++|++|++++|+....++..+.+....+ .++.++.+|++|.++++++++++.+.+++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            78999999999999999999999999999999998888777776655432 46889999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +|++|||+|.....++.+. +.+++++.+++|+.+++.+.+++++.|.+++  |++|++||..+..+.+....|+++|+|
T Consensus        82 id~vv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa  160 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDF-QLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG  160 (259)
T ss_pred             CCEEEECCCcCCCCCcccC-CHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHH
Confidence            9999999998776655553 4578899999999999999999999987653  799999999988888889999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcc-cCCCcCCcccCcCCC-ccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhcc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLI-ESEITGGKFLNKNGK-LEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v-~t~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +++++++++.|++++ |+||+|.||.+ .|++........... ....++..+..   .+..+..+|+|+++++++|+++
T Consensus       161 ~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~  240 (259)
T PRK12384        161 GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASP  240 (259)
T ss_pred             HHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCc
Confidence            999999999999887 99999999975 676654322110000 00122333322   2334445799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++++||+.+
T Consensus       241 ~~~~~~G~~~  250 (259)
T PRK12384        241 KASYCTGQSI  250 (259)
T ss_pred             ccccccCceE
Confidence            8899999853

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1e-35  Score=255.39  Aligned_cols=240  Identities=31%  Similarity=0.371  Sum_probs=199.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++++++||||+++||.+++++|+++|++|++++|+.++.++....+..  +.++.++.+|++|.++++++++++.++
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA--GGRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999888777666644  346889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|...........+.+.+++.+++|+.+++.+.+.+++.|++++ +++|++||..+..+.++...|+.+|
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk  158 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASK  158 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCchHHHHHH
Confidence            999999999999865433222234577899999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+++.++.++++. |++++++||+++|++........   .....+......+..++.+|+|+|+++++++++.++
T Consensus       159 ~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~  235 (251)
T PRK07231        159 GAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEP---TPENRAKFLATIPLGRLGTPEDIANAALFLASDEAS  235 (251)
T ss_pred             HHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhccc---ChHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcccc
Confidence            99999999999999886 99999999999999876543211   000111112222334455799999999999999888


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      +++|+.+
T Consensus       236 ~~~g~~~  242 (251)
T PRK07231        236 WITGVTL  242 (251)
T ss_pred             CCCCCeE
Confidence            9999853

>PRK07109 short chain dehydrogenase; Provisional

Probab=100.00  E-value=8.1e-36  Score=266.80  Aligned_cols=227  Identities=30%  Similarity=0.378  Sum_probs=193.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +...+++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++..+++|++|.++++++++++.
T Consensus         2 ~~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d~~~v~~~~~~~~   80 (334)
T PRK07109          2 MLKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-GEALAVVADVADAEAVQAAADRAE   80 (334)
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999888888877654 368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||+|.....++.+. +.+++++.+++|+.+++.+++.++|.|+++ .|+||++||..+..+.+.+..|++
T Consensus        81 ~~~g~iD~lInnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~a  159 (334)
T PRK07109         81 EELGPIDTWVNNAMVTVFGPFEDV-TPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSIPLQSAYCA  159 (334)
T ss_pred             HHCCCCCEEEECCCcCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCCCcchHHHH
Confidence            999999999999998766655554 458899999999999999999999999875 489999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCC--C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          200 SKAAKIALYETLRVEFGG--D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~--~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +|+++++|+++++.|+..  . |+|+.|+||.++|++......          .......+..++.+|||+|++++++++
T Consensus       160 sK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~----------~~~~~~~~~~~~~~pe~vA~~i~~~~~  229 (334)
T PRK07109        160 AKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARS----------RLPVEPQPVPPIYQPEVVADAILYAAE  229 (334)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhh----------hccccccCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999863  3 999999999999997542110          000111123456789999999999998


Q ss_pred             cCC
Q 042560          277 RGD  279 (287)
Q Consensus       277 ~~~  279 (287)
                      ++.
T Consensus       230 ~~~  232 (334)
T PRK07109        230 HPR  232 (334)
T ss_pred             CCC
Confidence            753

>PRK12937 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-35  Score=254.35  Aligned_cols=236  Identities=28%  Similarity=0.320  Sum_probs=194.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||++|||+++++.|+++|++++++.|+.. ..++..+++...+ .++.++.+|+++.++++++++++.+
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999988877543 4455555555443 4689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++++|++|||+|.....+..+ .+.+++++++++|+.+++.++++++|.|.+ +|++|++||..+..+.+++..|+++|
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~~~~~~Y~~sK  157 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIAD-FDLEDFDRTIATNLRGAFVVLREAARHLGQ-GGRIINLSTSVIALPLPGYGPYAASK  157 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhh-CCHHHHHHHHhhhchHHHHHHHHHHHHhcc-CcEEEEEeeccccCCCCCCchhHHHH
Confidence            9999999999999876544444 344778899999999999999999999865 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+++.++.++++. +++++|+||+++|++.....   .   ....+......+..+..+|+|+|+.+++++++.++
T Consensus       158 ~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~  231 (245)
T PRK12937        158 AAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGK---S---AEQIDQLAGLAPLERLGTPEEIAAAVAFLAGPDGA  231 (245)
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccC---C---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccc
Confidence            99999999999999877 99999999999999853211   0   00111122233444556899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      +++|+.+
T Consensus       232 ~~~g~~~  238 (245)
T PRK12937        232 WVNGQVL  238 (245)
T ss_pred             CccccEE
Confidence            9999753

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=9.5e-36  Score=255.66  Aligned_cols=232  Identities=27%  Similarity=0.308  Sum_probs=195.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++++++||||++|||++++++|+++|++|++ .+|+.++.++..++++..+ .++.++.+|++|++++.++++++.+.+
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999876 5788887777777776554 468889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|.....+..+. +.+.+++.+++|+.+++.++++++|.|.+++ |+||++||..+..+.++...|+++|+
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~y~~sK~  159 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMEL-EESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKA  159 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCccHHHHHHH
Confidence            999999999998766555443 4477888999999999999999999997654 89999999988888888999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++++++++.++.+. |++|+|.||+++|++..... .       ..+..+   ...+..++.+|+|+|+.++++++++
T Consensus       160 a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~  231 (250)
T PRK08063        160 ALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFP-N-------REELLEDARAKTPAGRMVEPEDVANAVLFLCSPE  231 (250)
T ss_pred             HHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhcc-C-------chHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCch
Confidence            9999999999999877 99999999999999865321 1       112221   1223334568999999999999988


Q ss_pred             CccccCCC
Q 042560          279 DRYLTQPS  286 (287)
Q Consensus       279 ~~~itG~~  286 (287)
                      +.+++|+.
T Consensus       232 ~~~~~g~~  239 (250)
T PRK08063        232 ADMIRGQT  239 (250)
T ss_pred             hcCccCCE
Confidence            88999975

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=9.7e-36  Score=255.51  Aligned_cols=240  Identities=20%  Similarity=0.270  Sum_probs=199.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++|+++||||+++||++++++|+++|++|++++|+.+..++..+.+...+ .++.++.+|++|.++++++++++.++++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQALG   79 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999999888777776665543 3588899999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||+|.....+..+ .+.+++++.+++|+.+++.+.+.+.+.|++.+ +++|++||..+..+.++...|+++|+|
T Consensus        80 ~~d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~~~~~Y~~sK~a  158 (250)
T TIGR03206        80 PVDVLVNNAGWDKFGPFTK-TEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSSGEAVYAACKGG  158 (250)
T ss_pred             CCCEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCCCCchHHHHHHH
Confidence            9999999999865554444 34467888999999999999999999997654 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++++.+++++.+. ++++.++||+++|++............... +......+..++.+|+|+|+++.+++++++.++
T Consensus       159 ~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~  237 (250)
T TIGR03206       159 LVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLR-EAFTRAIPLGRLGQPDDLPGAILFFSSDDASFI  237 (250)
T ss_pred             HHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHH-HHHHhcCCccCCcCHHHHHHHHHHHcCcccCCC
Confidence            999999999999776 999999999999998765432111110001 111222234456689999999999999999999


Q ss_pred             cCCCC
Q 042560          283 TQPSW  287 (287)
Q Consensus       283 tG~~~  287 (287)
                      +|+.+
T Consensus       238 ~g~~~  242 (250)
T TIGR03206       238 TGQVL  242 (250)
T ss_pred             cCcEE
Confidence            99864

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02415 23BDH acetoin reductases

Probab=100.00  E-value=1.6e-35  Score=254.88  Aligned_cols=238  Identities=27%  Similarity=0.321  Sum_probs=198.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+++||.+++++|+++|++|++++|+.+.+++..+++...+ .++..+.+|++|++++.++++++.++++++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG-GKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            689999999999999999999999999999999888877777766543 4688999999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||+|.....+..+. +.+++++.+++|+.+++.+++.+++.|++.+  |++|++||..+..+.++++.|+++|++++
T Consensus        80 ~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  158 (254)
T TIGR02415        80 VMVNNAGVAPITPILEI-TEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVR  158 (254)
T ss_pred             EEEECCCcCCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHH
Confidence            99999998766555443 4578899999999999999999999987653  79999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC----ccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK----LEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.++.++.+. |+|++++||+++|++...........    .....+......+..++.+|||+++++.+|+++.+.
T Consensus       159 ~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~  238 (254)
T TIGR02415       159 GLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASEDSD  238 (254)
T ss_pred             HHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccccC
Confidence            9999999999887 99999999999999865432111100    011111122223344567899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      +++|+.+
T Consensus       239 ~~~g~~~  245 (254)
T TIGR02415       239 YITGQSI  245 (254)
T ss_pred             CccCcEE
Confidence            9999863

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06484 short chain dehydrogenase; Validated

Probab=100.00  E-value=7.4e-36  Score=282.34  Aligned_cols=234  Identities=30%  Similarity=0.397  Sum_probs=195.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++..+.+|++|+++++++++++.+++
T Consensus         2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (520)
T PRK06484          2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL----GPDHHALAMDVSDEAQIREGFEQLHREF   77 (520)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999988877666554    2357789999999999999999999999


Q ss_pred             CCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-C-EEEEEcCCCCCCCCCCChhhhh
Q 042560          124 GRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-G-KIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       124 ~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g-~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++|++|||||....  .++.+ .+.++|++++++|+.+++.++++++|.|++++ | +||++||..+..+.++...|++
T Consensus        78 g~iD~li~nag~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~a  156 (520)
T PRK06484         78 GRIDVLVNNAGVTDPTMTATLD-TTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSA  156 (520)
T ss_pred             CCCCEEEECCCcCCCCCccccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHH
Confidence            999999999998432  23333 34578999999999999999999999996543 4 9999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+++|++.++.|+.+. |+|++|+||+++|++........    ....+......+..++.+|+|+|+.+++++++.
T Consensus       157 sKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~  232 (520)
T PRK06484        157 SKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAG----KLDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQ  232 (520)
T ss_pred             HHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccc----hhhhHHHHhcCCCCCCcCHHHHHHHHHHHhCcc
Confidence            9999999999999999887 99999999999999876432111    001111222234445678999999999999999


Q ss_pred             CccccCCC
Q 042560          279 DRYLTQPS  286 (287)
Q Consensus       279 ~~~itG~~  286 (287)
                      +++++|+.
T Consensus       233 ~~~~~G~~  240 (520)
T PRK06484        233 ASYITGST  240 (520)
T ss_pred             ccCccCce
Confidence            99999975

>PRK12939 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-35  Score=253.07  Aligned_cols=236  Identities=28%  Similarity=0.380  Sum_probs=199.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.++.++..++++..+ .++.++++|++|.++++++++++.+++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4679999999999999999999999999999999999988887777765543 368899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|........+ .+.+++++.++.|+.+++.+.+.+.|.|.++ .|++|++||..+..+.+....|+++|+
T Consensus        83 ~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sK~  161 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATE-LDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKG  161 (250)
T ss_pred             CCCCEEEECCCCCCCCChhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCcchHHHHHH
Confidence            99999999999876654444 3447788999999999999999999998764 489999999999999899999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.++++. +++++|.||+++|++.......      ...+......+..++.+|+|+|+++++++++.+++
T Consensus       162 ~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~------~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~  235 (250)
T PRK12939        162 AVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPAD------ERHAYYLKGRALERLQVPDDVAGAVLFLLSDAARF  235 (250)
T ss_pred             HHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCCh------HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccC
Confidence            9999999999999877 9999999999999987532110      01122223334455678999999999999998899


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      ++|+.+
T Consensus       236 ~~G~~i  241 (250)
T PRK12939        236 VTGQLL  241 (250)
T ss_pred             ccCcEE
Confidence            999864

>PRK12742 oxidoreductase; Provisional

Probab=100.00  E-value=1.8e-35  Score=251.93  Aligned_cols=224  Identities=24%  Similarity=0.304  Sum_probs=181.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||++|||++++++|+++|++|+++++ +.+..++..++.      .+..+.+|++|.+++.++++    +
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~------~~~~~~~D~~~~~~~~~~~~----~   72 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET------GATAVQTDSADRDAVIDVVR----K   72 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh------CCeEEecCCCCHHHHHHHHH----H
Confidence            467999999999999999999999999999988876 445544443332      24577899999998877764    3


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++++++.|++ .|++|++||..+. .+.++...|+++|
T Consensus        73 ~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~Y~~sK  150 (237)
T PRK12742         73 SGALDILVVNAGIAVFGDALEL-DADDIDRLFKINIHAPYHASVEAARQMPE-GGRIIIIGSVNGDRMPVAGMAAYAASK  150 (237)
T ss_pred             hCCCcEEEECCCCCCCCCcccC-CHHHHHHHHhHHHHHHHHHHHHHHHHHhc-CCeEEEEeccccccCCCCCCcchHHhH
Confidence            5789999999998765544443 44789999999999999999999999864 5899999998884 5778899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++++. |+||+|+||+++|++.....        ...+......+..++.+|+|+|+.+.+|+++.++
T Consensus       151 aa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~a~~~~~l~s~~~~  222 (237)
T PRK12742        151 SALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG--------PMKDMMHSFMAIKRHGRPEEVAGMVAWLAGPEAS  222 (237)
T ss_pred             HHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc--------HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccC
Confidence            99999999999999887 99999999999999854210        1122222233344567899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       223 ~~~G~~~  229 (237)
T PRK12742        223 FVTGAMH  229 (237)
T ss_pred             cccCCEE
Confidence            9999864

>PRK05884 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.4e-36  Score=252.63  Aligned_cols=204  Identities=22%  Similarity=0.177  Sum_probs=171.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||++|||++++++|+++|++|++++|+.+++++..+++      .+..+++|++|+++++++++++.+   ++|+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~---~id~   72 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL------DVDAIVCDNTDPASLEEARGLFPH---HLDT   72 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCcEEecCCCCHHHHHHHHHHHhh---cCcE
Confidence            4899999999999999999999999999999988877665543      256788999999999999887653   6999


Q ss_pred             EEEccccCCC--C----CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          129 LVTNAGVVPM--C----LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       129 li~nag~~~~--~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|||+|....  .    ++.+  +.++|++++++|+.+++.+++.++|.|++ +|+||++||..    .++...|+++|+
T Consensus        73 lv~~ag~~~~~~~~~~~~~~~--~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~g~Iv~isS~~----~~~~~~Y~asKa  145 (223)
T PRK05884         73 IVNVPAPSWDAGDPRTYSLAD--TANAWRNALDATVLSAVLTVQSVGDHLRS-GGSIISVVPEN----PPAGSAEAAIKA  145 (223)
T ss_pred             EEECCCccccCCCCcccchhc--CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeEEEEecCC----CCCccccHHHHH
Confidence            9999985321  1    1111  24789999999999999999999999975 58999999976    355788999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++....                   ...|.++|+|+|+.+.||++++++|
T Consensus       146 al~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~-------------------~~~p~~~~~~ia~~~~~l~s~~~~~  206 (223)
T PRK05884        146 ALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGL-------------------SRTPPPVAAEIARLALFLTTPAARH  206 (223)
T ss_pred             HHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhc-------------------cCCCCCCHHHHHHHHHHHcCchhhc
Confidence            9999999999999987 9999999999999864321                   1234568999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      +||+.+
T Consensus       207 v~G~~i  212 (223)
T PRK05884        207 ITGQTL  212 (223)
T ss_pred             cCCcEE
Confidence            999863

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.8e-35  Score=255.14  Aligned_cols=233  Identities=18%  Similarity=0.197  Sum_probs=190.7

Q ss_pred             CCCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCC-----------hhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           43 EDVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARR-----------ERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        43 ~~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      +++++|+++||||++  |||.+++++|+++|++|++++|+           ........+.+...+ .+++++++|++++
T Consensus         1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   79 (256)
T PRK12748          1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYG-VRCEHMEIDLSQP   79 (256)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence            467899999999994  99999999999999999999987           222222334443333 4689999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW  188 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~  188 (287)
                      ++++++++++.++++++|++|||||.....+..+. +.+++++.+++|+.+++.+.+++.+.|.+++ |++|++||..+.
T Consensus        80 ~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~  158 (256)
T PRK12748         80 YAPNRVFYAVSERLGDPSILINNAAYSTHTRLEEL-TAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSL  158 (256)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCcccc
Confidence            99999999999999999999999998765544443 4467889999999999999999999987654 899999999998


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHH
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEEC  267 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ev  267 (287)
                      .|.++...|+++|++++++++.++.++.+. |+|++++||+++|++.....          .+......+...+.+|+|+
T Consensus       159 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~  228 (256)
T PRK12748        159 GPMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEEL----------KHHLVPKFPQGRVGEPVDA  228 (256)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChhH----------HHhhhccCCCCCCcCHHHH
Confidence            888899999999999999999999999876 99999999999998754210          0111112233446689999


Q ss_pred             HHHHHHhhccCCccccCCCC
Q 042560          268 AKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       268 A~~i~~l~~~~~~~itG~~~  287 (287)
                      |+.+.+++++.+++++|+.+
T Consensus       229 a~~~~~l~~~~~~~~~g~~~  248 (256)
T PRK12748        229 ARLIAFLVSEEAKWITGQVI  248 (256)
T ss_pred             HHHHHHHhCcccccccCCEE
Confidence            99999999999999999753

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=100.00  E-value=2.1e-35  Score=256.31  Aligned_cols=231  Identities=20%  Similarity=0.153  Sum_probs=181.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHH----HHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDC----KHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v----~~~~~~~~~~  122 (287)
                      ++++||||++|||++++++|+++|++|++++| +.+.+++..+++....+.++..+.+|++|++++    +++++.+.+.
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999865 456677776666543334577889999999865    5566666677


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCC----------CcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDIT----------KPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASA  185 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~----------~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~  185 (287)
                      ++++|++|||||.....+..+....+          ++.+++++|+.+++.++++++|.|++.       .++|++++|.
T Consensus        82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~  161 (267)
T TIGR02685        82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA  161 (267)
T ss_pred             cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence            89999999999986654443322211          377889999999999999999998542       2689999999


Q ss_pred             CCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-CCCCC
Q 042560          186 AGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-LPVQP  263 (287)
Q Consensus       186 ~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  263 (287)
                      .+..+.+++..|++||+|+++|+++++.|+++. |+|++|+||+++|+....   .      ...+......+. .++.+
T Consensus       162 ~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~  232 (267)
T TIGR02685       162 MTDQPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP---F------EVQEDYRRKVPLGQREAS  232 (267)
T ss_pred             hccCCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc---h------hHHHHHHHhCCCCcCCCC
Confidence            999899999999999999999999999999887 999999999998763110   0      011111111122 24568


Q ss_pred             HHHHHHHHHHhhccCCccccCCCC
Q 042560          264 TEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       264 p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      |+|+|+.+++++++.++++||+.+
T Consensus       233 ~~~va~~~~~l~~~~~~~~~G~~~  256 (267)
T TIGR02685       233 AEQIADVVIFLVSPKAKYITGTCI  256 (267)
T ss_pred             HHHHHHHHHHHhCcccCCcccceE
Confidence            999999999999999999999863

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=100.00  E-value=3e-35  Score=254.10  Aligned_cols=237  Identities=30%  Similarity=0.363  Sum_probs=195.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||.+++++|+++|++|++++|+.++++...+++...+ .++.++++|++|+++++++++++.+
T Consensus         7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d~~~i~~~~~~~~~   85 (259)
T PRK08213          7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-IDALWIAADVADEADIERLAEETLE   85 (259)
T ss_pred             hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999888877777765543 3678899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHH-HhcCC-CEEEEEcCCCCCCCCCC----Ch
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPY-LKQTK-GKIIVVASAAGWLPPPR----MS  195 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-l~~~~-g~iv~isS~~~~~~~~~----~~  195 (287)
                      +++++|++|||+|.....+..+ .+.+.|++.++.|+.+++.+.+++.+. |.+++ +++|++||..+..+.+.    ..
T Consensus        86 ~~~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~~~~~  164 (259)
T PRK08213         86 RFGHVDILVNNAGATWGAPAED-HPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTI  164 (259)
T ss_pred             HhCCCCEEEECCCCCCCCChhh-CCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccccCcc
Confidence            9999999999999865444333 344778999999999999999999997 66544 79999999887766554    48


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|+++|++++++++.++.++++. |++++++||+++|++......       ...+......+...+++|+|+|+.++++
T Consensus       165 ~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~va~~~~~l  237 (259)
T PRK08213        165 AYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLE-------RLGEDLLAHTPLGRLGDDEDLKGAALLL  237 (259)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhH-------HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            89999999999999999999887 999999999999997653210       0111122233334456899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      +++.+++++|+.+
T Consensus       238 ~~~~~~~~~G~~~  250 (259)
T PRK08213        238 ASDASKHITGQIL  250 (259)
T ss_pred             hCccccCccCCEE
Confidence            9999999999863

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=100.00  E-value=2e-35  Score=252.12  Aligned_cols=227  Identities=23%  Similarity=0.290  Sum_probs=188.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++||||++|||+++|++|+++|++|++++|+ .+..++..++++..+ .++.++++|++|.++++++++++.+.++++|+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQG-GNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC-CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5899999999999999999999999998875 455666666665544 36889999999999999999999999999999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHH-HHHhc-CCCEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI-PYLKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~l~~-~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      +|||+|......+.+. +.++++.++++|+.+++.+.+.++ |.+++ +.|++|++||..+..+.+++..|+++|+++++
T Consensus        80 li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~~  158 (239)
T TIGR01831        80 VVLNAGITRDAAFPAL-SEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIG  158 (239)
T ss_pred             EEECCCCCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHHH
Confidence            9999998765544443 447889999999999999999875 55543 34899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCC
Q 042560          207 LYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQP  285 (287)
Q Consensus       207 ~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~  285 (287)
                      +++.++.|+.++ |+|++|+||+++|++..+..        ...+......+..++++|+|+|+.++||+++.++|+||+
T Consensus       159 ~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~  230 (239)
T TIGR01831       159 ATKALAVELAKRKITVNCIAPGLIDTEMLAEVE--------HDLDEALKTVPMNRMGQPAEVASLAGFLMSDGASYVTRQ  230 (239)
T ss_pred             HHHHHHHHHhHhCeEEEEEEEccCccccchhhh--------HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchhcCccCC
Confidence            999999999877 99999999999999875421        001111222344556789999999999999999999998


Q ss_pred             C
Q 042560          286 S  286 (287)
Q Consensus       286 ~  286 (287)
                      .
T Consensus       231 ~  231 (239)
T TIGR01831       231 V  231 (239)
T ss_pred             E
Confidence            5

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06138 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-35  Score=251.85  Aligned_cols=240  Identities=28%  Similarity=0.335  Sum_probs=198.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||+++||.+++++|+++|++|++++|+.+..++..+++.  .+.++..+++|++|.++++++++++.++
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~~   78 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA--AGGRAFARQGDVGSAEAVEALVDFVAAR   78 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999888777666665  2346889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|........+. +.+++++.+++|+.+++.+.+.+++.|++++ ++++++||..+..+.++...|+++|
T Consensus        79 ~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK  157 (252)
T PRK06138         79 WGRLDVLVNNAGFGCGGTVVTT-DEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASK  157 (252)
T ss_pred             cCCCCEEEECCCCCCCCCcccC-CHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCccHHHHHH
Confidence            9999999999998765544443 4477889999999999999999999997655 7999999999998889999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+++.++.++++. +++++++||.++|++........... ...........+...+.+|+|+|+.+++++++...
T Consensus       158 ~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~  236 (252)
T PRK06138        158 GAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADP-EALREALRARHPMNRFGTAEEVAQAALFLASDESS  236 (252)
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccCh-HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhc
Confidence            99999999999999876 99999999999999876543221100 00011111111222355799999999999999989


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      +++|+.
T Consensus       237 ~~~g~~  242 (252)
T PRK06138        237 FATGTT  242 (252)
T ss_pred             CccCCE
Confidence            999975

>PRK12744 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-35  Score=253.96  Aligned_cols=239  Identities=21%  Similarity=0.238  Sum_probs=184.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC----hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR----ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ..+++++|+++||||++|||+++|+.|+++|++|++++++    .+..++..++++..+ .++..+++|++|++++++++
T Consensus         2 ~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~   80 (257)
T PRK12744          2 ADHSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG-AKAVAFQADLTTAAAVEKLF   80 (257)
T ss_pred             CCCCCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC-CcEEEEecCcCCHHHHHHHH
Confidence            3456789999999999999999999999999997776543    334445555554433 36888999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEE-cCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVV-ASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~i-sS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||.....+..+. +.+++++.+++|+.+++.++++++|.|.+ .|+++++ ||..+ .+.+.+.
T Consensus        81 ~~~~~~~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~~~iv~~~ss~~~-~~~~~~~  157 (257)
T PRK12744         81 DDAKAAFGRPDIAINTVGKVLKKPIVEI-SEAEYDEMFAVNSKSAFFFIKEAGRHLND-NGKIVTLVTSLLG-AFTPFYS  157 (257)
T ss_pred             HHHHHhhCCCCEEEECCcccCCCCcccC-CHHHHHHHHhhhhhHHHHHHHHHHHhhcc-CCCEEEEecchhc-ccCCCcc
Confidence            9999999999999999998765554443 44789999999999999999999999875 4677776 45444 3567789


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC--CCCCCHHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL--LPVQPTEECAKAIV  272 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~evA~~i~  272 (287)
                      .|+++|+|+++|+++++.|+.+. |+||+++||+++|++...... +. .....++ .....+.  .++.+|+|+|+.+.
T Consensus       158 ~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~dva~~~~  234 (257)
T PRK12744        158 AYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG-AE-AVAYHKT-AAALSPFSKTGLTDIEDIVPFIR  234 (257)
T ss_pred             cchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc-cc-hhhcccc-cccccccccCCCCCHHHHHHHHH
Confidence            99999999999999999999987 999999999999997643211 10 0000000 1111111  24668999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +++++ .+++||+.+
T Consensus       235 ~l~~~-~~~~~g~~~  248 (257)
T PRK12744        235 FLVTD-GWWITGQTI  248 (257)
T ss_pred             Hhhcc-cceeecceE
Confidence            99996 689999753

>PRK06182 short chain dehydrogenase; Validated

Probab=100.00  E-value=3.8e-35  Score=255.52  Aligned_cols=232  Identities=27%  Similarity=0.333  Sum_probs=189.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||+||||++++++|+++|++|++++|+.+++++..+       ..+.++.+|++|.++++++++++.+.+++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-------LGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            67999999999999999999999999999999999887655432       13778899999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||+|.....++.+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.+....|+++|+++
T Consensus        75 id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~  153 (273)
T PRK06182         75 IDVLVNNAGYGSYGAIEDV-PIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFAL  153 (273)
T ss_pred             CCEEEECCCcCCCCchhhC-CHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCccHhHHHHHHH
Confidence            9999999999876655553 4578999999999999999999999997665 8999999999888888888999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccch--HH---HHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVD--QE---IRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~--~~---~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +++++.++.|+.+. |+|++|+||+++|++......    ........+  +.   ..........+.+|+|+|++++++
T Consensus       154 ~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~  233 (273)
T PRK06182        154 EGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKA  233 (273)
T ss_pred             HHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHH
Confidence            99999999999887 999999999999997532110    000000100  01   112222344567899999999999


Q ss_pred             hcc---CCccccCC
Q 042560          275 ACR---GDRYLTQP  285 (287)
Q Consensus       275 ~~~---~~~~itG~  285 (287)
                      +++   +..|++|.
T Consensus       234 ~~~~~~~~~~~~g~  247 (273)
T PRK06182        234 VTARRPKTRYAVGF  247 (273)
T ss_pred             HhCCCCCceeecCc
Confidence            984   45788775

>PRK07825 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.9e-35  Score=254.76  Aligned_cols=218  Identities=30%  Similarity=0.447  Sum_probs=189.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++++++||||++|||++++++|+++|++|++++|+.+++++..+.+.     ++.++.+|++|+++++++++++.+.
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~   75 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDPASFAAFLDAVEAD   75 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999988877665542     4778899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|......+.+. +.+.+++++++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|+++|
T Consensus        76 ~~~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  154 (273)
T PRK07825         76 LGPIDVLVNNAGVMPVGPFLDE-PDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASK  154 (273)
T ss_pred             cCCCCEEEECCCcCCCCccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCCcchHHHH
Confidence            9999999999999876655553 4478899999999999999999999997655 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.|+.+. |+++.|+||+++|++......                ....+..+|+|+|+.++.++.++..
T Consensus       155 aa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~~~----------------~~~~~~~~~~~va~~~~~~l~~~~~  218 (273)
T PRK07825        155 HAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTGG----------------AKGFKNVEPEDVAAAIVGTVAKPRP  218 (273)
T ss_pred             HHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccccc----------------ccCCCCCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999877 999999999999998654210                1123456799999999999987654


Q ss_pred             cc
Q 042560          281 YL  282 (287)
Q Consensus       281 ~i  282 (287)
                      .+
T Consensus       219 ~~  220 (273)
T PRK07825        219 EV  220 (273)
T ss_pred             EE
Confidence            43

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=100.00  E-value=5.1e-35  Score=250.17  Aligned_cols=233  Identities=26%  Similarity=0.306  Sum_probs=194.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|+.|++.+|+.+++++..+..    +.++.++.+|+++.++++++++++.+.
T Consensus         2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----GERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999888777655443    235788899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++++.+.+.++ .+++|++||..+..+.++...|+++|
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sk  156 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRM-SDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASK  156 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccC-CHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCCcchHHHH
Confidence            9999999999998766544443 347789999999999999999999877543 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++.+. +++++|+||+++|++.....       ....+......+..++++|+|+|+.+.+++++.+.
T Consensus       157 ~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ia~~~~~l~~~~~~  229 (245)
T PRK12936        157 AGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN-------DKQKEAIMGAIPMKRMGTGAEVASAVAYLASSEAA  229 (245)
T ss_pred             HHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC-------hHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCcccc
Confidence            99999999999999877 99999999999998764321       00111112223444566899999999999998888


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      +++|+.+
T Consensus       230 ~~~G~~~  236 (245)
T PRK12936        230 YVTGQTI  236 (245)
T ss_pred             CcCCCEE
Confidence            9999853

>PRK09186 flagellin modification protein A; Provisional

Probab=100.00  E-value=5e-35  Score=252.04  Aligned_cols=231  Identities=20%  Similarity=0.213  Sum_probs=187.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++|+++||||++|||+++|+.|+++|++|++++|+.++.++..+++... +...+.++++|++|++++.++++++.+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999998888877777443 33346677999999999999999999999


Q ss_pred             CCccEEEEccccCCC---CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCC-------
Q 042560          124 GRLDHLVTNAGVVPM---CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPP-------  192 (287)
Q Consensus       124 ~~idvli~nag~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~-------  192 (287)
                      +++|++|||||....   ..+.+ .+.+.+++.+++|+.+++.++++++|.|++++ |+||++||..+..+..       
T Consensus        82 ~~id~vi~~A~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~  160 (256)
T PRK09186         82 GKIDGAVNCAYPRNKDYGKKFFD-VSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGT  160 (256)
T ss_pred             CCccEEEECCccccccccCcccc-CCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhcccc
Confidence            999999999986432   22333 34577889999999999999999999997654 8999999987754321       


Q ss_pred             ---CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHH
Q 042560          193 ---RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA  268 (287)
Q Consensus       193 ---~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA  268 (287)
                         ....|+++|++++++++.++.++.+. |+||+|+||.+.++....           ..+..+...+...+.+|+|+|
T Consensus       161 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~dva  229 (256)
T PRK09186        161 SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEA-----------FLNAYKKCCNGKGMLDPDDIC  229 (256)
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHH-----------HHHHHHhcCCccCCCCHHHhh
Confidence               22469999999999999999999877 999999999998764211           011111222334567899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +.+++++++.+++++|+.+
T Consensus       230 ~~~~~l~~~~~~~~~g~~~  248 (256)
T PRK09186        230 GTLVFLLSDQSKYITGQNI  248 (256)
T ss_pred             hhHhheeccccccccCceE
Confidence            9999999999999999853

>PRK06057 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-35  Score=251.07  Aligned_cols=232  Identities=25%  Similarity=0.326  Sum_probs=189.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++||+++||||++|||.+++++|+++|++|++++|+....++..+++.      ..++++|++|+++++++++++.+.+
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~D~~~~~~~~~~~~~~~~~~   77 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG------GLFVPTDVTDEDAVNALFDTAAETY   77 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC------CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999877666555431      2578899999999999999999999


Q ss_pred             CCccEEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCC-CChhhhhh
Q 042560          124 GRLDHLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPP-RMSFYNAS  200 (287)
Q Consensus       124 ~~idvli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~-~~~~Y~as  200 (287)
                      +++|++|||+|..... ......+.+.+++.+++|+.+++.+++.++|.|+++ .|++|++||..+..+.+ +...|+++
T Consensus        78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~~~~~~Y~~s  157 (255)
T PRK06057         78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQISYTAS  157 (255)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCCCCCcchHHH
Confidence            9999999999986432 112223446788999999999999999999999764 48999999988877653 67889999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh--hhcCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |++++++++.++.++.++ ++|++|+||+++|++....+...      .++..+.  ..+...+.+|+|+|+++++++++
T Consensus       158 Kaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  231 (255)
T PRK06057        158 KGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKD------PERAARRLVHVPMGRFAEPEEIAAAVAFLASD  231 (255)
T ss_pred             HHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCC------HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            999999999999999877 99999999999999876543211      1111111  11233456899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .+.+++|++|
T Consensus       232 ~~~~~~g~~~  241 (255)
T PRK06057        232 DASFITASTF  241 (255)
T ss_pred             cccCccCcEE
Confidence            9999999864

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=3.3e-35  Score=250.15  Aligned_cols=223  Identities=22%  Similarity=0.243  Sum_probs=179.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.....          ..++..+.+|++++      ++++.+.
T Consensus         1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~----------~~~~~~~~~D~~~~------~~~~~~~   64 (235)
T PRK06550          1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL----------SGNFHFLQLDLSDD------LEPLFDW   64 (235)
T ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc----------CCcEEEEECChHHH------HHHHHHh
Confidence            4678999999999999999999999999999999999754311          13578899999887      4455556


Q ss_pred             cCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||+|.... .+..+ .+.+++++.+++|+.+++.++++++|.|.++ .|++|++||..+..+.++...|+++
T Consensus        65 ~~~id~lv~~ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  143 (235)
T PRK06550         65 VPSVDILCNTAGILDDYKPLLD-TSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTAS  143 (235)
T ss_pred             hCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcccHHH
Confidence            6899999999997643 23333 3447889999999999999999999998754 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++++++.++.++.++ |+||+|+||+++|++....+...     ...+......+..++.+|||+|+.+++++++.+
T Consensus       144 K~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~~~  218 (235)
T PRK06550        144 KHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPG-----GLADWVARETPIKRWAEPEEVAELTLFLASGKA  218 (235)
T ss_pred             HHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCch-----HHHHHHhccCCcCCCCCHHHHHHHHHHHcChhh
Confidence            999999999999999887 99999999999999865322110     011111222334445689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       219 ~~~~g~~~  226 (235)
T PRK06550        219 DYMQGTIV  226 (235)
T ss_pred             ccCCCcEE
Confidence            99999853

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.6e-34  Score=247.96  Aligned_cols=230  Identities=24%  Similarity=0.366  Sum_probs=195.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC--CHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS--KVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~v~~~~~~~~  120 (287)
                      ..+++|+++||||+++||.+++++|+++|++|++++|+.++.++..+++...+..++.++.+|++  ++++++++++.+.
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999988888777776655456777778885  7899999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||||...........+.+.+++.+++|+.+++.+.+.+.|.|.+++ +++|++||..+..+.+++..|++
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~~~Y~~  167 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAV  167 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCCcccHH
Confidence            99999999999999864432222234477899999999999999999999997654 89999999999999899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|++++++++.++.++... +++++++||+++|++....+...               ....+.+|+|+++.+++++++.
T Consensus       168 sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~  232 (247)
T PRK08945        168 SKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPGE---------------DPQKLKTPEDIMPLYLYLMGDD  232 (247)
T ss_pred             HHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCcc---------------cccCCCCHHHHHHHHHHHhCcc
Confidence            9999999999999999877 99999999999999754332111               0123568999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +++++|+.+
T Consensus       233 ~~~~~g~~~  241 (247)
T PRK08945        233 SRRKNGQSF  241 (247)
T ss_pred             ccccCCeEE
Confidence            999999864

>PRK06123 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-34  Score=247.40  Aligned_cols=231  Identities=29%  Similarity=0.286  Sum_probs=187.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|+++||||++|||.+++++|+++|++|+++.+ +.+..++..+.+...+ .++.++++|++|.++++++++++.+++++
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQG-GEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCC-CcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            579999999999999999999999999988874 4555555555565444 35788999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCC-hhhhhh
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRM-SFYNAS  200 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~-~~Y~as  200 (287)
                      +|++|||+|...........+++++++.+++|+.+++.+++++++.|.++    +|++|++||..+..+.++. ..|+++
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~Y~~s  160 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAAS  160 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCCCccchHHH
Confidence            99999999987543323334557888999999999999999999998643    3789999999998887764 679999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++++++.++.++.++ |+|++|+||.+.|++.....         .++..+...   +....++|+|+|++++++++
T Consensus       161 Kaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~---------~~~~~~~~~~~~p~~~~~~~~d~a~~~~~l~~  231 (248)
T PRK06123        161 KGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG---------EPGRVDRVKAGIPMGRGGTAEEVARAILWLLS  231 (248)
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC---------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999887 99999999999999754211         111222222   23334579999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.+++++|+.+
T Consensus       232 ~~~~~~~g~~~  242 (248)
T PRK06123        232 DEASYTTGTFI  242 (248)
T ss_pred             ccccCccCCEE
Confidence            98889999753

>PRK05866 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=253.54  Aligned_cols=226  Identities=30%  Similarity=0.359  Sum_probs=189.5

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      +.+++.+++++|+++||||+||||+++|++|+++|++|++++|+.+.+++..+++...+ .++.++.+|++|.+++++++
T Consensus        30 ~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~  108 (293)
T PRK05866         30 RPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-GDAMAVPCDLSDLDAVDALV  108 (293)
T ss_pred             CCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHH
Confidence            34556788899999999999999999999999999999999999988888877776544 35788999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCC-CCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC-CCCC
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDY-TDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL-PPPR  193 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~-~~~~  193 (287)
                      +++.++++++|++|||||.....+..+. .+++++++.+++|+.+++.++++++|.|++++ |+||++||..+.. +.++
T Consensus       109 ~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p~  188 (293)
T PRK05866        109 ADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPL  188 (293)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCC
Confidence            9999999999999999998766544332 12356778999999999999999999997654 8999999976654 4678


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      ...|+++|+|+++++++++.|+.+. |+|++|+||+++|++......                ....+..+||++|+.++
T Consensus       189 ~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~----------------~~~~~~~~pe~vA~~~~  252 (293)
T PRK05866        189 FSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKA----------------YDGLPALTADEAAEWMV  252 (293)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccccc----------------ccCCCCCCHHHHHHHHH
Confidence            8899999999999999999999887 999999999999998753100                01123457999999999


Q ss_pred             HhhccCC
Q 042560          273 NSACRGD  279 (287)
Q Consensus       273 ~l~~~~~  279 (287)
                      ..+.++.
T Consensus       253 ~~~~~~~  259 (293)
T PRK05866        253 TAARTRP  259 (293)
T ss_pred             HHHhcCC
Confidence            9987653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-34  Score=247.91  Aligned_cols=234  Identities=31%  Similarity=0.334  Sum_probs=188.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .|+++||||++|||.++++.|+++|++|+++. |+.+..++..++++..+ .++..+++|++|.++++++++++.+++++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAG-GRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999999998764 56666666666665543 36889999999999999999999998999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCC-Chhhhhh
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPR-MSFYNAS  200 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~-~~~Y~as  200 (287)
                      +|++|||||...........+.+++++.+++|+.+++.+++.+++.+.++    +|++|++||..+..+.+. +..|+++
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~~Y~~s  160 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGS  160 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCCCCcccHhh
Confidence            99999999987553322334457788999999999999999999988643    368999999998877664 5789999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++++++.++.++.+. ++|+.|+||+++|++....  ..    ....+......+..+..+|||+|+.+++++++.+
T Consensus       161 K~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~--~~----~~~~~~~~~~~~~~~~~~~e~va~~~~~l~~~~~  234 (248)
T PRK06947        161 KGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG--GQ----PGRAARLGAQTPLGRAGEADEVAETIVWLLSDAA  234 (248)
T ss_pred             HHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc--CC----HHHHHHHhhcCCCCCCcCHHHHHHHHHHHcCccc
Confidence            999999999999999877 9999999999999986421  00    0001111122233345689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      ++++|+.+
T Consensus       235 ~~~~G~~~  242 (248)
T PRK06947        235 SYVTGALL  242 (248)
T ss_pred             cCcCCceE
Confidence            99999864

>PRK05875 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=251.29  Aligned_cols=236  Identities=22%  Similarity=0.247  Sum_probs=194.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++++|+++||||+++||++++++|+++|++|++++|+.++.++..+++.... ..++.++++|++|+++++++++++.+
T Consensus         3 ~~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   82 (276)
T PRK05875          3 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA   82 (276)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999888777766665432 24688889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||+|...........+.+++.+.+++|+.+++.+++++++.|.+++ |+++++||..+..+.+..+.|+++
T Consensus        83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~s  162 (276)
T PRK05875         83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGAYGVT  162 (276)
T ss_pred             HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCCCcchHHH
Confidence            9999999999999754322222234467889999999999999999999887544 899999999998888889999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++++++.++.++... |++++|.||+++|++......        .+...+..   .+...+++|+|+|++++++++
T Consensus       163 K~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  234 (276)
T PRK05875        163 KSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE--------SPELSADYRACTPLPRVGEVEDVANLAMFLLS  234 (276)
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc--------CHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcC
Confidence            999999999999999877 999999999999998653211        11111111   223445679999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      +...+++|+.
T Consensus       235 ~~~~~~~g~~  244 (276)
T PRK05875        235 DAASWITGQV  244 (276)
T ss_pred             chhcCcCCCE
Confidence            9888888874

>PRK07069 short chain dehydrogenase; Validated

Probab=100.00  E-value=9.7e-35  Score=249.45  Aligned_cols=235  Identities=23%  Similarity=0.341  Sum_probs=192.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++||||++|||+++++.|+++|++|++++|+ .+.+++..+++.... ...+..+++|++|.++++++++++.++++++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            7999999999999999999999999999998 666777666665432 22456688999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      ++|||+|........+. +.+++++++++|+.+++.+++.++|.|.+++ |+||++||..+..+.+++..|+++|+++++
T Consensus        82 ~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~~  160 (251)
T PRK07069         82 VLVNNAGVGSFGAIEQI-ELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVAS  160 (251)
T ss_pred             EEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCCchhHHHHHHHHH
Confidence            99999998776555543 4478899999999999999999999997654 899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC---eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          207 LYETLRVEFGGD---IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       207 ~~~~la~e~~~~---i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      ++++++.|+.++   |+|++|+||+++|++...........  ..........+...+++|+|+|+.+++|+++.+.++|
T Consensus       161 ~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~  238 (251)
T PRK07069        161 LTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEE--EATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVT  238 (251)
T ss_pred             HHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccch--hHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCcc
Confidence            999999998643   99999999999999876432111000  0011112223344567899999999999999999999


Q ss_pred             CCCC
Q 042560          284 QPSW  287 (287)
Q Consensus       284 G~~~  287 (287)
                      |+.+
T Consensus       239 g~~i  242 (251)
T PRK07069        239 GAEL  242 (251)
T ss_pred             CCEE
Confidence            9853

>PRK05854 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-34  Score=254.17  Aligned_cols=238  Identities=19%  Similarity=0.146  Sum_probs=186.9

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..+..++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++... ++.++.++.+|++|.++++++++
T Consensus         6 ~~~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~   85 (313)
T PRK05854          6 DITVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGE   85 (313)
T ss_pred             cccCcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHH
Confidence            34456789999999999999999999999999999999999999888888877553 33468899999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-------
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-------  190 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-------  190 (287)
                      ++.++++++|++|||||..... ..+ .+.+.++..+++|+.+++.+++.++|.|+++.|+||++||..+..+       
T Consensus        86 ~~~~~~~~iD~li~nAG~~~~~-~~~-~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~  163 (313)
T PRK05854         86 QLRAEGRPIHLLINNAGVMTPP-ERQ-TTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDL  163 (313)
T ss_pred             HHHHhCCCccEEEECCccccCC-ccc-cCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccc
Confidence            9999999999999999986532 222 3457899999999999999999999999876789999999877543       


Q ss_pred             -----CCCChhhhhhHHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-CCCC
Q 042560          191 -----PPRMSFYNASKAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-LLPV  261 (287)
Q Consensus       191 -----~~~~~~Y~asKaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  261 (287)
                           .++...|+.||+|+.+|++.+++++.  +. |+||+++||+++|++...................+.... ...+
T Consensus       164 ~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (313)
T PRK05854        164 NWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDTLMVRLIRSLSARGFLV  243 (313)
T ss_pred             cccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhHHHHHHHHHHhhccccc
Confidence                 24567899999999999999998653  44 999999999999998653211000000011122222211 1235


Q ss_pred             CCHHHHHHHHHHhhccC
Q 042560          262 QPTEECAKAIVNSACRG  278 (287)
Q Consensus       262 ~~p~evA~~i~~l~~~~  278 (287)
                      .+|++-|...++++..+
T Consensus       244 ~~~~~ga~~~l~~a~~~  260 (313)
T PRK05854        244 GTVESAILPALYAATSP  260 (313)
T ss_pred             CCHHHHHHHhhheeeCC
Confidence            68999999999888643

>PRK07024 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-34  Score=249.15  Aligned_cols=218  Identities=31%  Similarity=0.387  Sum_probs=185.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++||||++|||++++++|+++|++|++++|+.+.+++..+++...+  ++.++.+|++|.++++++++++.++++++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i   79 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP   79 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999999999999999999999888777666554322  68899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|...........+.+++++++++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++|++++
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~  159 (257)
T PRK07024         80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAAI  159 (257)
T ss_pred             CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCCcchHHHHHHHH
Confidence            99999999865433333234577899999999999999999999997654 89999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      .+++.++.|+++. ++|++|+||+++|++......                 ....+.+||++|+.++.++.++..+..
T Consensus       160 ~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----------------~~~~~~~~~~~a~~~~~~l~~~~~~~~  221 (257)
T PRK07024        160 KYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNPY-----------------PMPFLMDADRFAARAARAIARGRRFRV  221 (257)
T ss_pred             HHHHHHHHHhhccCcEEEEEecCCCcCchhhcCCC-----------------CCCCccCHHHHHHHHHHHHhCCCcEEE
Confidence            9999999999877 999999999999997542100                 011135799999999999988766543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=248.99  Aligned_cols=242  Identities=24%  Similarity=0.329  Sum_probs=199.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||+++||++++++|+++|++|++++|+++..++..+.++..+ .++.++++|++|.++++++++++.+++
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4679999999999999999999999999999999999988888887776544 368889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHH-hcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l-~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++|++|||+|........+. +.+.+++.+++|+.+++.+++.+++.| ++.+ +++|++||..+..+.+....|+++|
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk  161 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENY-SFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAK  161 (262)
T ss_pred             CCCCEEEECCccCCCCchhhC-CHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHHH
Confidence            999999999998765554443 447788999999999999999999999 5443 8999999999988888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHHhhh----hcCCCCCCHHHHHHHHHHhh
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRDVQ----ISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~p~evA~~i~~l~  275 (287)
                      ++++++++.++.++.+. |++++++||+++|++....+....... ...++..+..    .....+.+|+|+|+++++++
T Consensus       162 ~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~  241 (262)
T PRK13394        162 HGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLS  241 (262)
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHc
Confidence            99999999999999876 999999999999998654332211111 1112222221    12234568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +..+.+++|+.|
T Consensus       242 ~~~~~~~~g~~~  253 (262)
T PRK13394        242 SFPSAALTGQSF  253 (262)
T ss_pred             CccccCCcCCEE
Confidence            988888888754

>PRK06198 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-34  Score=248.06  Aligned_cols=239  Identities=24%  Similarity=0.304  Sum_probs=196.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++|+++||||++|||++++++|+++|++ |++++|+.++.++..+++...+ .++.++.+|+++++++.++++.+.++
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSDVEDCRRVVAAADEA   81 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999998 9999999887776666664443 46888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||+|........+. +.+.+++.+++|+.+++.+++.+++.|.++  .|++|++||..+..+.++...|+++
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~s  160 (260)
T PRK06198         82 FGRLDALVNAAGLTDRGTILDT-SPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQPFLAAYCAS  160 (260)
T ss_pred             hCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCCCcchhHHH
Confidence            9999999999998765544443 447788999999999999999999999764  3899999999998888889999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++++++.++.++.+. |+|++|+||+++|++.........   ...+.+.+   ...+..++.+|+|+|+.++++++
T Consensus       161 K~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~  237 (260)
T PRK06198        161 KGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFH---GAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLS  237 (260)
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhcc---CCChHHHHHHhccCCccCCcCHHHHHHHHHHHcC
Confidence            999999999999999877 999999999999997432100000   00111111   12233445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.+++++|+.+
T Consensus       238 ~~~~~~~G~~~  248 (260)
T PRK06198        238 DESGLMTGSVI  248 (260)
T ss_pred             hhhCCccCceE
Confidence            99999999864

>PRK07832 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4e-34  Score=248.99  Aligned_cols=234  Identities=24%  Similarity=0.327  Sum_probs=190.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+......+.+|++|+++++++++++.+.++++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999999999998888877777655544456678999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||+|........+ .+.+++++.+++|+.+++.+++.++|.|.++  +|+||++||..+..+.++...|+++|++++
T Consensus        81 ~lv~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~  159 (272)
T PRK07832         81 VVMNIAGISAWGTVDR-LTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLR  159 (272)
T ss_pred             EEEECCCCCCCCcccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHH
Confidence            9999999876655544 3557899999999999999999999999653  389999999999889999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh--cCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI--SLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++.++.|+.++ |+|++|+||+++|++...........   +++..+...  ...+..+|+|+|+.++++++. .+++
T Consensus       160 ~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~-~~~~  235 (272)
T PRK07832        160 GLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDR---EDPRVQKWVDRFRGHAVTPEKAAEKILAGVEK-NRYL  235 (272)
T ss_pred             HHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCc---chhhHHHHHHhcccCCCCHHHHHHHHHHHHhc-CCeE
Confidence            9999999999877 99999999999999876431110000   111111111  123456899999999999965 4676


Q ss_pred             cCCC
Q 042560          283 TQPS  286 (287)
Q Consensus       283 tG~~  286 (287)
                      +++.
T Consensus       236 ~~~~  239 (272)
T PRK07832        236 VYTS  239 (272)
T ss_pred             EecC
Confidence            6653

>PRK05855 short chain dehydrogenase; Validated

Probab=100.00  E-value=4.3e-34  Score=273.18  Aligned_cols=239  Identities=29%  Similarity=0.390  Sum_probs=197.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .....+.+++++||||+||||++++++|+++|++|++++|+.+++++..+.++..+. ++.++.+|++|.++++++++++
T Consensus       308 ~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~  386 (582)
T PRK05855        308 RPRGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWV  386 (582)
T ss_pred             cccccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHH
Confidence            344566889999999999999999999999999999999999998888887766553 6889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||......+.+. +.+++++++++|+.+++.++++++|.|.+++  |+||++||.++..+.++...|
T Consensus       387 ~~~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y  465 (582)
T PRK05855        387 RAEHGVPDIVVNNAGIGMAGGFLDT-SAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPAY  465 (582)
T ss_pred             HHhcCCCcEEEECCccCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCCCCCcHH
Confidence            9999999999999999876665553 4588999999999999999999999997654  799999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh--hcCCCCCCHHHHHHHHHHh
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ--ISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~evA~~i~~l  274 (287)
                      ++||+|++++++.++.|+.+. |+|++|+||+++|+|.+........... .+......  ....+..+|||+|++++++
T Consensus       466 ~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~va~~~~~~  544 (582)
T PRK05855        466 ATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAED-EARRRGRADKLYQRRGYGPEKVAKAIVDA  544 (582)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccch-hhhHHhhhhhhccccCCCHHHHHHHHHHH
Confidence            999999999999999999887 9999999999999987753211110000 01111111  1122334799999999999


Q ss_pred             hccCCcc
Q 042560          275 ACRGDRY  281 (287)
Q Consensus       275 ~~~~~~~  281 (287)
                      ++.+...
T Consensus       545 ~~~~~~~  551 (582)
T PRK05855        545 VKRNKAV  551 (582)
T ss_pred             HHcCCCE
Confidence            9876543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=5e-34  Score=245.87  Aligned_cols=241  Identities=25%  Similarity=0.380  Sum_probs=199.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++|+++||||+++||++++++|+++|++|++++|+.++.++..++++..+ .++..+.+|++|.++++++++++.++++
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999998888777776544 4688999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||+|........+. +.+++++.+++|+.+++.+.+.+++.|++++ +++|++||..+..+.++...|+++|++
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~~k~a  159 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDF-PTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHG  159 (258)
T ss_pred             CCCEEEECCCCCCCCChhhC-CHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCcchhHHHHHH
Confidence            99999999998766655543 3467888999999999999999999997655 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC--ccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhcc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK--LEVDQEIRDV---QISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++++++.++.++.+. |+|++++||+++|++...........  ....+...+.   ......+.+++|+|+.+++++++
T Consensus       160 ~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~  239 (258)
T PRK12429        160 LIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASF  239 (258)
T ss_pred             HHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccccCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCc
Confidence            999999999999877 99999999999999865432211111  1111111111   12223455799999999999998


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      ....++|+.+
T Consensus       240 ~~~~~~g~~~  249 (258)
T PRK12429        240 AAKGVTGQAW  249 (258)
T ss_pred             cccCccCCeE
Confidence            8788888753

>PRK06180 short chain dehydrogenase; Provisional

Probab=100.00  E-value=8.4e-34  Score=247.64  Aligned_cols=235  Identities=24%  Similarity=0.283  Sum_probs=189.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .+|+++||||+||||++++++|+++|++|++++|+.++++...+.    .+.++..+.+|++|.+++.++++.+.+.+++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----HPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999998876554332    2335888999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||||.....+..+. +.+++++.+++|+.+++.+.++++|.|++++ |++|++||..+..+.+++..|+++|+++
T Consensus        79 ~d~vv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~  157 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEES-PLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFAL  157 (277)
T ss_pred             CCEEEECCCccCCcccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCcchhHHHHHHH
Confidence            9999999998766555443 4477899999999999999999999997654 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHH------hhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIR------DVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +++++.++.++++. +++++|+||.++|++................+..      ........+.+|+|+|+++++++++
T Consensus       158 ~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~  237 (277)
T PRK06180        158 EGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVES  237 (277)
T ss_pred             HHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcC
Confidence            99999999999876 9999999999999975432211110110001111      1112334466899999999999986


Q ss_pred             C---CccccCC
Q 042560          278 G---DRYLTQP  285 (287)
Q Consensus       278 ~---~~~itG~  285 (287)
                      +   .+|++|.
T Consensus       238 ~~~~~~~~~g~  248 (277)
T PRK06180        238 DEPPLHLLLGS  248 (277)
T ss_pred             CCCCeeEeccH
Confidence            5   4677764

>PRK07454 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-34  Score=243.83  Aligned_cols=224  Identities=26%  Similarity=0.265  Sum_probs=190.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||++|||++++++|+++|++|++++|+.++.++..+.++..+ .++.++.+|++|.+++.++++++.+++++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999988777777665543 36889999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||+|.....+..+ .+.+++++.+++|+.+++.+.+.++|.|.+++ +++|++||..+..+.+++..|+++|+++
T Consensus        84 id~lv~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~  162 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLE-MPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAAL  162 (241)
T ss_pred             CCEEEECCCccCCCchhh-CCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCccHHHHHHHHH
Confidence            999999999876544433 34477889999999999999999999987654 8999999999988889999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      +.+++.++.++.+. +++++|.||+++|++......             .......++.+|+|+|+.++++++++.+.++
T Consensus       163 ~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~-------------~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~  229 (241)
T PRK07454        163 AAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV-------------QADFDRSAMLSPEQVAQTILHLAQLPPSAVI  229 (241)
T ss_pred             HHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc-------------ccccccccCCCHHHHHHHHHHHHcCCcccee
Confidence            99999999999876 999999999999998542100             0011223567899999999999998877665


Q ss_pred             C
Q 042560          284 Q  284 (287)
Q Consensus       284 G  284 (287)
                      +
T Consensus       230 ~  230 (241)
T PRK07454        230 E  230 (241)
T ss_pred             e
Confidence            5

>PRK05993 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-34  Score=249.58  Aligned_cols=231  Identities=25%  Similarity=0.280  Sum_probs=184.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-C
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-G  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~  124 (287)
                      .+|+++||||+||||++++++|+++|++|++++|+.+.++++.+    .   .+.++.+|++|.++++++++++.+.+ +
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~~~~~~~~~~~~~g   75 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESIAALVAQVLELSGG   75 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999887665432    1   36788999999999999999987766 6


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||||....+...+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++.+.|+++|++
T Consensus        76 ~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  154 (277)
T PRK05993         76 RLDALFNNGAYGQPGAVEDL-PTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFA  154 (277)
T ss_pred             CccEEEECCCcCCCCCcccC-CHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCccchHHHHHHH
Confidence            89999999998877665553 4578899999999999999999999998765 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC----CccchHHHH--------hhhhcCCCCCCHHHHHHH
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG----KLEVDQEIR--------DVQISLLPVQPTEECAKA  270 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~p~evA~~  270 (287)
                      +++++++++.|+.+. |+|++|+||+++|++..........    ......+.+        +.........+||++|+.
T Consensus       155 ~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~  234 (277)
T PRK05993        155 IEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALAAFKRWIDIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAV  234 (277)
T ss_pred             HHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHHHHhhhhccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHH
Confidence            999999999999887 9999999999999987643211000    000000001        011112223479999999


Q ss_pred             HHHhhccCC---ccccC
Q 042560          271 IVNSACRGD---RYLTQ  284 (287)
Q Consensus       271 i~~l~~~~~---~~itG  284 (287)
                      ++..+..+.   .|+.|
T Consensus       235 i~~a~~~~~~~~~~~~~  251 (277)
T PRK05993        235 LLHALTAPRPRPHYRVT  251 (277)
T ss_pred             HHHHHcCCCCCCeeeeC
Confidence            999997653   35554

>PRK07904 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.1e-34  Score=244.99  Aligned_cols=217  Identities=19%  Similarity=0.260  Sum_probs=180.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++||||++|||+++|++|+++| ++|++++|+.++ +++..++++..+..++.++++|++|.++++++++++.+ .
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-~   85 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-G   85 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-c
Confidence            57899999999999999999999995 899999999886 78887777765544689999999999999999998886 4


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|...... ..+.+.+...+.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|++||+
T Consensus        86 g~id~li~~ag~~~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~~~~Y~~sKa  164 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAE-ELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRSNFVYGSTKA  164 (253)
T ss_pred             CCCCEEEEeeecCCchh-hcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCCCcchHHHHH
Confidence            89999999999864321 11111123345799999999999999999998765 89999999999888888899999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      |+.+|++.++.|+.++ ++|++|+||+++|++..+..                  ......+|||+|+.++..+.++...
T Consensus       165 a~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~------------------~~~~~~~~~~~A~~i~~~~~~~~~~  226 (253)
T PRK07904        165 GLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAK------------------EAPLTVDKEDVAKLAVTAVAKGKEL  226 (253)
T ss_pred             HHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCC------------------CCCCCCCHHHHHHHHHHHHHcCCCE
Confidence            9999999999999887 99999999999999875421                  0112347999999999999876554


Q ss_pred             c
Q 042560          282 L  282 (287)
Q Consensus       282 i  282 (287)
                      +
T Consensus       227 ~  227 (253)
T PRK07904        227 V  227 (253)
T ss_pred             E
Confidence            3

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=100.00  E-value=1e-33  Score=242.16  Aligned_cols=228  Identities=22%  Similarity=0.255  Sum_probs=189.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      |+++||||+++||+++|++|+++|++|++++|+.. ..++....... ...++.++++|++|.++++++++++.++++++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF-TEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999854 22222222222 23468899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|.....++.+. +.+++++.+++|+.+++.+++.++|.|++.+ +++|++||..+..+.++.+.|+++|++++
T Consensus        82 d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~  160 (245)
T PRK12824         82 DILVNNAGITRDSVFKRM-SHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMI  160 (245)
T ss_pred             CEEEECCCCCCCCccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCChHHHHHHHHHH
Confidence            999999998766555443 4588999999999999999999999997644 89999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ++++.++.++.+. +++++++||+++|++.....          ++..+.   ..+...+.+|+|+|+++.+++++.+.+
T Consensus       161 ~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~  230 (245)
T PRK12824        161 GFTKALASEGARYGITVNCIAPGYIATPMVEQMG----------PEVLQSIVNQIPMKRLGTPEEIAAAVAFLVSEAAGF  230 (245)
T ss_pred             HHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC----------HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccC
Confidence            9999999999876 99999999999999865321          122222   223334557999999999999988899


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      ++|+.+
T Consensus       231 ~~G~~~  236 (245)
T PRK12824        231 ITGETI  236 (245)
T ss_pred             ccCcEE
Confidence            999863

>PRK08263 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-33  Score=245.64  Aligned_cols=234  Identities=29%  Similarity=0.392  Sum_probs=191.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .+|+++||||+||||++++++|+++|++|++++|+.+.+++..+..    ...+..+++|++|+++++++++.+.+.+++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY----GDRLLPLALDVTDRAAVFAAVETAVEHFGR   77 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999988776654432    235788899999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||+|.....+..+. +.+++++.+++|+.+++.+++.++|.|++++ +++|++||..+..+.++...|+++|+++
T Consensus        78 ~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~  156 (275)
T PRK08263         78 LDIVVNNAGYGLFGMIEEV-TESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWAL  156 (275)
T ss_pred             CCEEEECCCCccccccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCccHHHHHHHHH
Confidence            9999999998866655553 4578999999999999999999999997654 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHH---HhhhhcCCCC-CCHHHHHHHHHHhhccCC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEI---RDVQISLLPV-QPTEECAKAIVNSACRGD  279 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~p~evA~~i~~l~~~~~  279 (287)
                      +++++.++.++++. ++|+.++||+++|++......... .....++.   .........+ .+|+|+|+.++++++.+.
T Consensus       157 ~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~  235 (275)
T PRK08263        157 EGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRAT-PLDAYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAEN  235 (275)
T ss_pred             HHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCC-CchhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCC
Confidence            99999999999877 999999999999998752211111 11111111   2222244455 789999999999998642


Q ss_pred             ---ccccCC
Q 042560          280 ---RYLTQP  285 (287)
Q Consensus       280 ---~~itG~  285 (287)
                         ++++|.
T Consensus       236 ~~~~~~~~~  244 (275)
T PRK08263        236 PPLRLFLGS  244 (275)
T ss_pred             CCeEEEeCc
Confidence               466664

>PRK06196 oxidoreductase; Provisional

Probab=100.00  E-value=1.6e-33  Score=250.28  Aligned_cols=228  Identities=20%  Similarity=0.188  Sum_probs=181.3

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++.     .+.++++|++|.++++++++++.
T Consensus        20 ~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~   94 (315)
T PRK06196         20 AGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFL   94 (315)
T ss_pred             cCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999999888777666553     26788999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~----------  189 (287)
                      ++++++|++|||||.....  .. .+.+.++..+++|+.+++.++++++|.|++++ ++||++||..+..          
T Consensus        95 ~~~~~iD~li~nAg~~~~~--~~-~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~  171 (315)
T PRK06196         95 DSGRRIDILINNAGVMACP--ET-RVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHF  171 (315)
T ss_pred             hcCCCCCEEEECCCCCCCC--Cc-cCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCc
Confidence            9899999999999976432  22 23477899999999999999999999997765 8999999976532          


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh-hhcC-CCCCCH
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV-QISL-LPVQPT  264 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~p  264 (287)
                        +.++...|++||++++.+++.++.++.+. |+|++|+||+++|++.+.......    ........ ..+. ..+++|
T Consensus       172 ~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  247 (315)
T PRK06196        172 TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQ----VALGWVDEHGNPIDPGFKTP  247 (315)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhh----hhhhhhhhhhhhhhhhcCCH
Confidence              33456789999999999999999999877 999999999999998654211000    00000110 0011 135789


Q ss_pred             HHHHHHHHHhhccCCc
Q 042560          265 EECAKAIVNSACRGDR  280 (287)
Q Consensus       265 ~evA~~i~~l~~~~~~  280 (287)
                      +|+|.+++++++.+..
T Consensus       248 ~~~a~~~~~l~~~~~~  263 (315)
T PRK06196        248 AQGAATQVWAATSPQL  263 (315)
T ss_pred             hHHHHHHHHHhcCCcc
Confidence            9999999999976543

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-33  Score=238.51  Aligned_cols=196  Identities=26%  Similarity=0.322  Sum_probs=168.0

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +....+-.|++++|||||.|||++.|++||++|.+|++++|++++++.+.+++++..+..+..+.+|+++.+++-+-+.+
T Consensus        41 ~~~~~~~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~  120 (312)
T KOG1014|consen   41 PKDLKEKLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE  120 (312)
T ss_pred             ecchHHhcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence            33444445799999999999999999999999999999999999999999999988778899999999988873332222


Q ss_pred             HHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCCh
Q 042560          119 TMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~  195 (287)
                      .... ..|.+||||+|...  +..+.+. +.+.+++++++|..+...+++.++|.|.+++ |.|||+||.+|..|.|.++
T Consensus       121 ~l~~-~~VgILVNNvG~~~~~P~~f~~~-~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s  198 (312)
T KOG1014|consen  121 KLAG-LDVGILVNNVGMSYDYPESFLKY-PEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLS  198 (312)
T ss_pred             HhcC-CceEEEEecccccCCCcHHHHhC-chhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHH
Confidence            2221 36788999999987  3334443 3247889999999999999999999997754 9999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGG  236 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~  236 (287)
                      .|+++|+.++.|+++|+.||+.+ |.|.++.|++|.|+|..-
T Consensus       199 ~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~  240 (312)
T KOG1014|consen  199 VYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKY  240 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccccc
Confidence            99999999999999999999988 999999999999999763

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=100.00  E-value=1.7e-33  Score=240.27  Aligned_cols=231  Identities=23%  Similarity=0.271  Sum_probs=191.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      |+++||||++|||++++++|+++|++|+++.| +....++..++....+ .++..+.+|++|+++++++++++.+.++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALG-FDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhC-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999988 5555555555554333 368899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|........+ .+.+++++.++.|+.+++.+.++++|.|++++ +++|++||..+..+.+++..|+++|++++
T Consensus        80 d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~  158 (242)
T TIGR01829        80 DVLVNNAGITRDATFKK-MTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMI  158 (242)
T ss_pred             cEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCcchhHHHHHHHH
Confidence            99999999876554444 34477889999999999999999999997655 89999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG  284 (287)
                      .+++.++.++.+. ++++++.||+++|++......       ...+......+...+.+|+|+|+.+.+++++++.+++|
T Consensus       159 ~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G  231 (242)
T TIGR01829       159 GFTKALAQEGATKGVTVNTISPGYIATDMVMAMRE-------DVLNSIVAQIPVGRLGRPEEIAAAVAFLASEEAGYITG  231 (242)
T ss_pred             HHHHHHHHHhhhhCeEEEEEeeCCCcCccccccch-------HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccC
Confidence            9999999999876 999999999999998653210       00111122234445678999999999999998899999


Q ss_pred             CCC
Q 042560          285 PSW  287 (287)
Q Consensus       285 ~~~  287 (287)
                      +.+
T Consensus       232 ~~~  234 (242)
T TIGR01829       232 ATL  234 (242)
T ss_pred             CEE
Confidence            853

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK12746 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-33  Score=242.01  Aligned_cols=235  Identities=24%  Similarity=0.317  Sum_probs=191.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++++++||||++|||.++|++|+++|++|++. .|+.++.++..+.+...+ .++.++++|++|++++.++++++.++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG-GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999998775 688777766666654433 35888999999999999999999887


Q ss_pred             c------CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          123 F------GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       123 ~------~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +      +++|++|||+|........+. +.+.+++.+++|+.+++.+++.+++.|.+ .|++|++||..+..+.+++..
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~v~~sS~~~~~~~~~~~~  159 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENT-TEEIFDEIMAVNIKAPFFLIQQTLPLLRA-EGRVINISSAEVRLGFTGSIA  159 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhc-CCEEEEECCHHhcCCCCCCcc
Confidence            6      479999999998765544443 44678899999999999999999999865 479999999999888999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+++|++++++++.+++++.+. ++|++++||+++|++.......+.     ............+..+|+|+|+.+.+++
T Consensus       160 Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~dva~~~~~l~  234 (254)
T PRK12746        160 YGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPE-----IRNFATNSSVFGRIGQVEDIADAVAFLA  234 (254)
T ss_pred             hHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChh-----HHHHHHhcCCcCCCCCHHHHHHHHHHHc
Confidence            9999999999999999999877 999999999999998754321110     0111111222345567999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++.+.+++|+.
T Consensus       235 ~~~~~~~~g~~  245 (254)
T PRK12746        235 SSDSRWVTGQI  245 (254)
T ss_pred             CcccCCcCCCE
Confidence            98888888864

>PRK05650 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-33  Score=243.09  Aligned_cols=229  Identities=28%  Similarity=0.384  Sum_probs=191.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+||||++++++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|.++++++++++.++++++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            479999999999999999999999999999999988888877776554 3688899999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      ++|||+|......+.+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++.+.|+++|+++++
T Consensus        80 ~lI~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~  158 (270)
T PRK05650         80 VIVNNAGVASGGFFEEL-SLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVA  158 (270)
T ss_pred             EEEECCCCCCCCCcccC-CHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCchHHHHHHHHHHH
Confidence            99999998876655553 4478899999999999999999999997655 899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          207 LYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       207 ~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      ++++++.|+.+. |++++|+||+++|++.........    ......+... ..+..+|+++|+.++..++++..++.
T Consensus       159 ~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~vA~~i~~~l~~~~~~~~  231 (270)
T PRK05650        159 LSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNP----AMKAQVGKLL-EKSPITAADIADYIYQQVAKGEFLIL  231 (270)
T ss_pred             HHHHHHHHhcccCcEEEEEecCccccCcccccccCch----hHHHHHHHHh-hcCCCCHHHHHHHHHHHHhCCCEEEe
Confidence            999999999877 999999999999998764322111    1111122111 22345799999999999988654443

>PRK07774 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-33  Score=239.93  Aligned_cols=233  Identities=27%  Similarity=0.325  Sum_probs=188.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...+ .++..+.+|++|.++++++++++.+.
T Consensus         2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (250)
T PRK07774          2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSA   80 (250)
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999887777766665443 35778899999999999999999999


Q ss_pred             cCCccEEEEccccCCC---CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPM---CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||+|....   .+..+ .+.+.+++.+++|+.+++.++++++|.|.++ .|++|++||..+..+   ...|+
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---~~~Y~  156 (250)
T PRK07774         81 FGGIDYLVNNAAIYGGMKLDLLIT-VPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY---SNFYG  156 (250)
T ss_pred             hCCCCEEEECCCCcCCCCCCChhh-CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC---ccccH
Confidence            9999999999998643   22222 3456788899999999999999999998654 489999999887643   56899


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|++++++++.+++++... +++++++||+++|++.......     ....... +..+.....+|+|+|+.+++++++
T Consensus       157 ~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~d~a~~~~~~~~~  230 (250)
T PRK07774        157 LAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPK-----EFVADMV-KGIPLSRMGTPEDLVGMCLFLLSD  230 (250)
T ss_pred             HHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCH-----HHHHHHH-hcCCCCCCcCHHHHHHHHHHHhCh
Confidence            99999999999999999876 9999999999999986532110     0111111 122333456899999999999998


Q ss_pred             CCccccCCC
Q 042560          278 GDRYLTQPS  286 (287)
Q Consensus       278 ~~~~itG~~  286 (287)
                      ..+.++|+.
T Consensus       231 ~~~~~~g~~  239 (250)
T PRK07774        231 EASWITGQI  239 (250)
T ss_pred             hhhCcCCCE
Confidence            766777764

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=100.00  E-value=2.6e-33  Score=240.20  Aligned_cols=232  Identities=27%  Similarity=0.418  Sum_probs=189.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++|+++||||++|||.+++++|+++|++|+++.+ +.+..++..+.+...+ .++.++++|++|+++++++++++.+++
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG-HDVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999987654 4566666666665443 468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|........+ .+.+.+++.+++|+.+++.+++.++|.|.++ .+++|++||..+..+.+++..|+++|+
T Consensus        83 ~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~  161 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKK-LNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKA  161 (247)
T ss_pred             CCCCEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCCcchHHHHH
Confidence            99999999999876554433 3457889999999999999999999998654 489999999999888889999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.++.+. ++++.++||+++|++......      . .............+..|||+|+++++++++. ++
T Consensus       162 a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~------~-~~~~~~~~~~~~~~~~~edva~~~~~~~~~~-~~  233 (247)
T PRK12935        162 GMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPE------E-VRQKIVAKIPKKRFGQADEIAKGVVYLCRDG-AY  233 (247)
T ss_pred             HHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccH------H-HHHHHHHhCCCCCCcCHHHHHHHHHHHcCcc-cC
Confidence            9999999999999776 999999999999987543210      0 0111112223334568999999999999764 58


Q ss_pred             ccCCC
Q 042560          282 LTQPS  286 (287)
Q Consensus       282 itG~~  286 (287)
                      ++|+.
T Consensus       234 ~~g~~  238 (247)
T PRK12935        234 ITGQQ  238 (247)
T ss_pred             ccCCE
Confidence            88875

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=100.00  E-value=4.9e-33  Score=238.90  Aligned_cols=226  Identities=22%  Similarity=0.296  Sum_probs=184.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||++|||.+++++|+++|++|++++|+.+++++..+.+    +.++.++.+|++|.++++++++++.++++++|
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   76 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNID   76 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----ccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            36899999999999999999999999999999988776655443    23588899999999999999999999999999


Q ss_pred             EEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||+|.... .+..+ .+.+++++++++|+.+++.+++.++|.|.+++ +++|++||..+..+.++...|+++|++++
T Consensus        77 ~vi~~ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~  155 (248)
T PRK10538         77 VLVNNAGLALGLEPAHK-ASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR  155 (248)
T ss_pred             EEEECCCccCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCCCchhHHHHHHHH
Confidence            99999997542 22222 34578899999999999999999999997655 89999999999888889999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCc-ccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGK-FLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      ++++.++.++.+. |+|++|.||+++|++.... +...      ... ...........+|+|+|++++++++....+.+
T Consensus       156 ~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~  228 (248)
T PRK10538        156 QFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD------DGK-AEKTYQNTVALTPEDVSEAVWWVATLPAHVNI  228 (248)
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc------HHH-HHhhccccCCCCHHHHHHHHHHHhcCCCcccc
Confidence            9999999999887 9999999999985544321 1111      111 11111222335799999999999998888777


Q ss_pred             CC
Q 042560          284 QP  285 (287)
Q Consensus       284 G~  285 (287)
                      ++
T Consensus       229 ~~  230 (248)
T PRK10538        229 NT  230 (248)
T ss_pred             hh
Confidence            65

>PLN00015 protochlorophyllide reductase

Probab=100.00  E-value=1.5e-33  Score=249.70  Aligned_cols=230  Identities=19%  Similarity=0.172  Sum_probs=181.3

Q ss_pred             EEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           51 LITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        51 lVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      +||||++|||++++++|+++| ++|++++|+.++.++..+++... +.++.++++|++|.++++++++++.++++++|++
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP-KDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            699999999999999999999 99999999988887777666432 2368888999999999999999999888999999


Q ss_pred             EEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCC---------------
Q 042560          130 VTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLP---------------  190 (287)
Q Consensus       130 i~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~---------------  190 (287)
                      |||||+.... +..+ .+.+++++.+++|+.+++.+++.++|.|+++   +|+||++||..+..+               
T Consensus        80 InnAG~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~  158 (308)
T PLN00015         80 VCNAAVYLPTAKEPT-FTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL  158 (308)
T ss_pred             EECCCcCCCCCCcCC-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence            9999986432 2223 3457899999999999999999999999765   389999999876421               


Q ss_pred             --------------------CCCChhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcc-cCCCcCCcccCcCCCccc
Q 042560          191 --------------------PPRMSFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLI-ESEITGGKFLNKNGKLEV  247 (287)
Q Consensus       191 --------------------~~~~~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v-~t~~~~~~~~~~~~~~~~  247 (287)
                                          .++..+|++||+|+..+++.+++++.+ + |+|++|+||+| +|+|.+.....    ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~----~~~  234 (308)
T PLN00015        159 RGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPL----FRL  234 (308)
T ss_pred             hhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHH----HHH
Confidence                                124567999999988889999999964 4 99999999999 78887532100    000


Q ss_pred             hHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          248 DQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       248 ~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ....... .....+.+|||.|+.+++++++.+.+.+|+.|
T Consensus       235 ~~~~~~~-~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~  273 (308)
T PLN00015        235 LFPPFQK-YITKGYVSEEEAGKRLAQVVSDPSLTKSGVYW  273 (308)
T ss_pred             HHHHHHH-HHhcccccHHHhhhhhhhhccccccCCCcccc
Confidence            0000111 12223578999999999999988878888764

>PRK06194 hypothetical protein; Provisional

Probab=100.00  E-value=4.6e-33  Score=243.97  Aligned_cols=238  Identities=29%  Similarity=0.383  Sum_probs=190.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+ .++.++.+|++|.++++++++++.+.+
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999999999999888887777765543 368889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-------CEEEEEcCCCCCCCCCCChh
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-------GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-------g~iv~isS~~~~~~~~~~~~  196 (287)
                      +++|++|||||........+ .+.+++++.+++|+.+++.++++++|.|.+++       |++|++||..+..+.++.+.
T Consensus        82 g~id~vi~~Ag~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~  160 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWE-NSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAPPAMGI  160 (287)
T ss_pred             CCCCEEEECCCCCCCCCccc-CCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCcc
Confidence            99999999999977654444 34578899999999999999999999886542       69999999999999899999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCC--C-eEEEEEeCCcccCCCcCCcccCcCCC-----ccchHHHHhhhhc---CCCCCCHH
Q 042560          197 YNASKAAKIALYETLRVEFGG--D-IGITIVTPGLIESEITGGKFLNKNGK-----LEVDQEIRDVQIS---LLPVQPTE  265 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~--~-i~v~~i~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~p~  265 (287)
                      |+++|++++++++.++.+++.  . +|++.+.||+++|++.......+...     ...+.........   .....+++
T Consensus       161 Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  240 (287)
T PRK06194        161 YNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSERNRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAE  240 (287)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccccCchhcccCccccchhhHHHHHHHhhhhccCCCHH
Confidence            999999999999999999863  3 99999999999999876432111100     0001111111111   11124899


Q ss_pred             HHHHHHHHhhccCCcccc
Q 042560          266 ECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       266 evA~~i~~l~~~~~~~it  283 (287)
                      |+|+.++.++.++..++.
T Consensus       241 dva~~i~~~~~~~~~~~~  258 (287)
T PRK06194        241 EVAQLVFDAIRAGRFYIY  258 (287)
T ss_pred             HHHHHHHHHHHcCCeEEE
Confidence            999999998876665554

>PRK09134 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-33  Score=238.95  Aligned_cols=232  Identities=19%  Similarity=0.168  Sum_probs=185.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .++..+|+++||||++|||++++++|+++|++|+++.++ .+..++..+++...+ .++.++.+|++|.++++++++++.
T Consensus         4 ~~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~   82 (258)
T PRK09134          4 MSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALG-RRAVALQADLADEAEVRALVARAS   82 (258)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHHHH
Confidence            334578999999999999999999999999999887664 455666666665443 368889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +.++++|++|||||.....+..+ .+.+++++++++|+.+++.+++++.+.+.++ .|++|+++|..+..+.|++..|++
T Consensus        83 ~~~~~iD~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~~~Y~~  161 (258)
T PRK09134         83 AALGPITLLVNNASLFEYDSAAS-FTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDFLSYTL  161 (258)
T ss_pred             HHcCCCCEEEECCcCCCCCcccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCchHHHH
Confidence            98999999999999876554444 3447889999999999999999999998764 489999999888878888889999


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +|++++++++.++.++.++++|++|+||++.|+....        .....+. ..........+|+|+|++++++++.  
T Consensus       162 sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~--------~~~~~~~-~~~~~~~~~~~~~d~a~~~~~~~~~--  230 (258)
T PRK09134        162 SKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQS--------PEDFARQ-HAATPLGRGSTPEEIAAAVRYLLDA--  230 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccC--------hHHHHHH-HhcCCCCCCcCHHHHHHHHHHHhcC--
Confidence            9999999999999999766999999999998864211        0001111 1111223345799999999999974  


Q ss_pred             ccccCCC
Q 042560          280 RYLTQPS  286 (287)
Q Consensus       280 ~~itG~~  286 (287)
                      .+++|+.
T Consensus       231 ~~~~g~~  237 (258)
T PRK09134        231 PSVTGQM  237 (258)
T ss_pred             CCcCCCE
Confidence            5678864

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=5.3e-33  Score=238.69  Aligned_cols=231  Identities=26%  Similarity=0.343  Sum_probs=189.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++++++||||++|||.++++.|+++|++|++++|+.+++++..++++..+ .++..+++|+++.++++++++.+.+.
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAED   79 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988888777776544 36888999999999999999999988


Q ss_pred             cCCccEEEEccccCCCCCCC--------CCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCC
Q 042560          123 FGRLDHLVTNAGVVPMCLFE--------DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPP  192 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~--------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~  192 (287)
                      ++++|++|||+|........        ...+.+.++.++++|+.+++.+.+.++|.|.++  +|.++++||.. ..+.+
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~-~~~~~  158 (253)
T PRK08217         80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIA-RAGNM  158 (253)
T ss_pred             cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEcccc-ccCCC
Confidence            89999999999975432211        122346678889999999999999999988654  37888998864 56778


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECA  268 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA  268 (287)
                      +...|+++|+|+++++++++.++.++ +++++++||+++|++.....          ++..+   ...+...+.+|+|+|
T Consensus       159 ~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~a  228 (253)
T PRK08217        159 GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMK----------PEALERLEKMIPVGRLGEPEEIA  228 (253)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC----------HHHHHHHHhcCCcCCCcCHHHHH
Confidence            89999999999999999999999876 99999999999999865321          22222   222334456899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +++.++++  +.+++|+.+
T Consensus       229 ~~~~~l~~--~~~~~g~~~  245 (253)
T PRK08217        229 HTVRFIIE--NDYVTGRVL  245 (253)
T ss_pred             HHHHHHHc--CCCcCCcEE
Confidence            99999995  368898753

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=237.94  Aligned_cols=198  Identities=24%  Similarity=0.379  Sum_probs=178.7

Q ss_pred             hhhhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           35 FVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        35 ~~~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      ++..........+|.++|||+.+|+|+.+|++|.++|++|++..-+++..+++..+..   ..+...++.|+++++++++
T Consensus        17 ~~~~~~~~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~---s~rl~t~~LDVT~~esi~~   93 (322)
T KOG1610|consen   17 VRLERQVLDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK---SPRLRTLQLDVTKPESVKE   93 (322)
T ss_pred             HHHhhhcccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc---CCcceeEeeccCCHHHHHH
Confidence            3344456677789999999999999999999999999999999888887777666554   3478888999999999999


Q ss_pred             HHHHHHHhc--CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC
Q 042560          115 FVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP  192 (287)
Q Consensus       115 ~~~~~~~~~--~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~  192 (287)
                      +.+.+++..  .++..+|||||+.......++.+.+++++++++|++|++.+++.++|++++.+||||++||..|..+.|
T Consensus        94 a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p  173 (322)
T KOG1610|consen   94 AAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALP  173 (322)
T ss_pred             HHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCc
Confidence            999999875  359999999998877666667788999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITG  235 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~  235 (287)
                      ..+.|++||+|++.|+.++++|+.+. |+|..|.||..+|++..
T Consensus       174 ~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~  217 (322)
T KOG1610|consen  174 ALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN  217 (322)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence            99999999999999999999999998 99999999999999886

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=100.00  E-value=4.2e-33  Score=269.32  Aligned_cols=246  Identities=23%  Similarity=0.231  Sum_probs=197.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +...+++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++... +..++..+++|++|.++++++++++
T Consensus       408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i  487 (676)
T TIGR02632       408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADV  487 (676)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            445678999999999999999999999999999999999988887777666542 3335788999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....+..+. +.++|+..+++|+.+++.+++.+++.|++++  |+||++||..+..+.++...|
T Consensus       488 ~~~~g~iDilV~nAG~~~~~~~~~~-~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY  566 (676)
T TIGR02632       488 ALAYGGVDIVVNNAGIATSSPFEET-TLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAY  566 (676)
T ss_pred             HHhcCCCcEEEECCCCCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHH
Confidence            9999999999999998765554443 4578999999999999999999999997653  799999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCC--CcCCcccCcCC--CccchHHHHhhhhcCC---CCCCHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESE--ITGGKFLNKNG--KLEVDQEIRDVQISLL---PVQPTEECAK  269 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~p~evA~  269 (287)
                      +++|++++++++.++.++++. |+||+|+||.+.|+  +....+.....  .....++..+......   ...+|||||+
T Consensus       567 ~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~  646 (676)
T TIGR02632       567 SAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAKRTLLKRHIFPADIAE  646 (676)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHH
Confidence            999999999999999999887 99999999999653  32211100000  0000112222222233   3457999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      ++++++++.++++||+.+
T Consensus       647 av~~L~s~~~~~~TG~~i  664 (676)
T TIGR02632       647 AVFFLASSKSEKTTGCII  664 (676)
T ss_pred             HHHHHhCCcccCCcCcEE
Confidence            999999988899999853

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.9e-33  Score=261.38  Aligned_cols=230  Identities=26%  Similarity=0.274  Sum_probs=189.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++++||||++|||++++++|+++|++|+++++..  +.+++..+++      ....+.+|++|.++++++++++.+
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~------~~~~~~~Dv~~~~~~~~~~~~~~~  280 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV------GGTALALDITAPDAPARIAEHLAE  280 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc------CCeEEEEeCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999998843  3333332222      235678999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh-cCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~-~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||+|......+.+. +.+.|++++++|+.+++.+.+.+.+.+. +.+++||++||..+..+.+++..|+++
T Consensus       281 ~~g~id~vi~~AG~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~~~Y~as  359 (450)
T PRK08261        281 RHGGLDIVVHNAGITRDKTLANM-DEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAAS  359 (450)
T ss_pred             hCCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCChHHHHH
Confidence            99999999999998766555443 4578999999999999999999999543 335899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+++++|++.++.++.+. |++|+|+||+++|++......       ...+..+.+....+.+.|+|+|++++||+++.+
T Consensus       360 Kaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~-------~~~~~~~~~~~l~~~~~p~dva~~~~~l~s~~~  432 (450)
T PRK08261        360 KAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPF-------ATREAGRRMNSLQQGGLPVDVAETIAWLASPAS  432 (450)
T ss_pred             HHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccch-------hHHHHHhhcCCcCCCCCHHHHHHHHHHHhChhh
Confidence            999999999999999887 999999999999998654211       112333333344455689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       433 ~~itG~~i  440 (450)
T PRK08261        433 GGVTGNVV  440 (450)
T ss_pred             cCCCCCEE
Confidence            99999863

>PRK09072 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.9e-33  Score=239.95  Aligned_cols=222  Identities=25%  Similarity=0.313  Sum_probs=187.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++++++||||++|||++++++|+++|++|++++|+.+.+++...++. . +.++.++.+|++|.++++++++.+.+ 
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~D~~d~~~~~~~~~~~~~-   77 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y-PGRHRWVVADLTSEAGREAVLARARE-   77 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c-CCceEEEEccCCCHHHHHHHHHHHHh-
Confidence            56789999999999999999999999999999999999888887776662 2 34688999999999999999998876 


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|.....+..+. +.+++++.+++|+.+++.+++.++|.|.+++ |++|++||..+..+.++...|+++|
T Consensus        78 ~~~id~lv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  156 (263)
T PRK09072         78 MGGINVLINNAGVNHFALLEDQ-DPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASK  156 (263)
T ss_pred             cCCCCEEEECCCCCCccccccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCccHHHHHH
Confidence            7899999999998765544443 4477889999999999999999999997764 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++.+. |+|+.++||+++|++......          +....  ...++.+|+|+|+.++++++....
T Consensus       157 ~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~~----------~~~~~--~~~~~~~~~~va~~i~~~~~~~~~  224 (263)
T PRK09072        157 FALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQ----------ALNRA--LGNAMDDPEDVAAAVLQAIEKERA  224 (263)
T ss_pred             HHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhcc----------ccccc--ccCCCCCHHHHHHHHHHHHhCCCC
Confidence            99999999999999877 999999999999987543110          00000  112456899999999999987643

>PRK07060 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-33  Score=238.14  Aligned_cols=229  Identities=27%  Similarity=0.284  Sum_probs=187.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++++++||||+++||+++++.|+++|++|++++|+.++.++..+..      ....+.+|+++.++++++++.    
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~----   74 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET------GCEPLRLDVGDDAAIRAALAA----   74 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------CCeEEEecCCCHHHHHHHHHH----
Confidence            5678999999999999999999999999999999999987766554432      255788999999988887764    


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      .+++|++|||+|.....+..+ .+.+++++.+.+|+.+++.+++++++.+.+++  |++|++||..+..+.++...|+++
T Consensus        75 ~~~~d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~s  153 (245)
T PRK07060         75 AGAFDGLVNCAGIASLESALD-MTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCAS  153 (245)
T ss_pred             hCCCCEEEECCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHH
Confidence            478999999999876554444 34477889999999999999999999887654  799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++.+++.++.++.+. +++++++||+++|++....+....     ..+......+..++.+|+|+|+++++++++++
T Consensus       154 K~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~  228 (245)
T PRK07060        154 KAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQ-----KSGPMLAAIPLGRFAEVDDVAAPILFLLSDAA  228 (245)
T ss_pred             HHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHH-----HHHHHHhcCCCCCCCCHHHHHHHHHHHcCccc
Confidence            999999999999999876 999999999999998653221110     01111122234456689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       229 ~~~~G~~~  236 (245)
T PRK07060        229 SMVSGVSL  236 (245)
T ss_pred             CCccCcEE
Confidence            99999864

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=8.2e-33  Score=236.66  Aligned_cols=236  Identities=31%  Similarity=0.423  Sum_probs=197.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||+++||.++++.|+++|++|+++ +|+.++.++..+.+...+ .++.++.+|++|.++++++++++.+
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999998 999888777777665533 4688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      .++++|++|||+|........+. +.+.+++.+++|+.+++.+.+.+.|.+.+++ +++|++||..+..+.+....|+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~s  158 (247)
T PRK05565         80 KFGKIDILVNNAGISNFGLVTDM-TDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSAS  158 (247)
T ss_pred             HhCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCccHHHHH
Confidence            88999999999998755444443 4477899999999999999999999987654 799999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++.+++.++.++.+. +++++++||+++|++.+......       ........+..+..+|+++|+.+++++++.+
T Consensus       159 K~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~  231 (247)
T PRK05565        159 KGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEED-------KEGLAEEIPLGRLGKPEEIAKVVLFLASDDA  231 (247)
T ss_pred             HHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHH-------HHHHHhcCCCCCCCCHHHHHHHHHHHcCCcc
Confidence            999999999999999776 99999999999999865432110       1111112233445689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      ..++|+.+
T Consensus       232 ~~~~g~~~  239 (247)
T PRK05565        232 SYITGQII  239 (247)
T ss_pred             CCccCcEE
Confidence            99999863

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2e-33  Score=224.15  Aligned_cols=185  Identities=23%  Similarity=0.341  Sum_probs=167.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++.|-+++||||++|||+++|++|.+.|-+|++++|+.+.+++..++.     ..++...||+.|.+++++++++++++
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~-----p~~~t~v~Dv~d~~~~~~lvewLkk~   75 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN-----PEIHTEVCDVADRDSRRELVEWLKKE   75 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC-----cchheeeecccchhhHHHHHHHHHhh
Confidence            5778999999999999999999999999999999999999998876654     24788999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCC-CCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFE-DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      |..++++|||||+...-.+. ....++..++-+++|+.+++++++.++|.+.++ ++.||++||..++.|+...+.||++
T Consensus        76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvYcaT  155 (245)
T COG3967          76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCAT  155 (245)
T ss_pred             CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccchhh
Confidence            99999999999998665444 222345567789999999999999999998877 5999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESE  232 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~  232 (287)
                      |||+..++.+|+..++.. |.|.-+.|-.|+|+
T Consensus       156 KAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         156 KAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             HHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence            999999999999999876 99999999999997

>PRK06924 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-33  Score=239.54  Aligned_cols=234  Identities=18%  Similarity=0.181  Sum_probs=182.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      |+++||||++|||++++++|+++|++|++++|+. +.+++..+    ..+.+++++++|++|.++++++++++.+.++..
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAE----QYNSNLTFHSLDLQDVHELETNFNEILSSIQED   77 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHh----ccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence            6899999999999999999999999999999986 33333222    222468889999999999999999988766532


Q ss_pred             ----cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          127 ----DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       127 ----dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                          +++|+|+|...........+.+++++.+++|+.+++.+++.++|.|++.  .|+||++||..+..+.+++..|+++
T Consensus        78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  157 (251)
T PRK06924         78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSS  157 (251)
T ss_pred             cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhHH
Confidence                2899999986543222223557899999999999999999999999764  3799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |+|++++++.++.|++  +. ++|++|.||+++|++...............+... ...+..++.+|+|+|+.+++++++
T Consensus       158 Kaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dva~~~~~l~~~  236 (251)
T PRK06924        158 KAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFI-TLKEEGKLLSPEYVAKALRNLLET  236 (251)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHH-HHhhcCCcCCHHHHHHHHHHHHhc
Confidence            9999999999999975  34 9999999999999986532211111100011111 222345567899999999999998


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      . ++++|+.+
T Consensus       237 ~-~~~~G~~~  245 (251)
T PRK06924        237 E-DFPNGEVI  245 (251)
T ss_pred             c-cCCCCCEe
Confidence            5 89999863

>PRK12827 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-32  Score=235.44  Aligned_cols=233  Identities=28%  Similarity=0.369  Sum_probs=191.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC----ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR----RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++++++++||||++|||++++++|+++|++|++++|    +.+..++..++....+ .++.++.+|++|.++++++++++
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAG-GKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHH
Confidence            367899999999999999999999999999998765    3444455545554433 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHH-HHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI-PYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||+|.....++.+. +.+++++.+++|+.+++.+++.+. +.+++++ +++|++||..+..+.++...|
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y  160 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAEL-SIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNY  160 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchh
Confidence            9998999999999998776555443 457788999999999999999999 6665544 799999999999898999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|++++.+++.++.++++. +++++++||+++|++....+         ..+......+..++.+|+|+|+.++++++
T Consensus       161 ~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~va~~~~~l~~  231 (249)
T PRK12827        161 AASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAA---------PTEHLLNPVPVQRLGEPDEVAALVAFLVS  231 (249)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccc---------hHHHHHhhCCCcCCcCHHHHHHHHHHHcC
Confidence            999999999999999999876 99999999999999765422         11122222334455689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.+.+++|+.+
T Consensus       232 ~~~~~~~g~~~  242 (249)
T PRK12827        232 DAASYVTGQVI  242 (249)
T ss_pred             cccCCccCcEE
Confidence            98889999863

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=8.9e-33  Score=238.03  Aligned_cols=232  Identities=24%  Similarity=0.298  Sum_probs=187.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|+++||||++|||.+++++|+++|++|++++|+.. ..++..+.++..+ .++.++.+|++|++++.++++++.+.+++
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALG-VEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999998743 4445555554433 36889999999999999999999999999


Q ss_pred             ccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-------CEEEEEcCCCCCCCCCCChh
Q 042560          126 LDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-------GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       126 idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-------g~iv~isS~~~~~~~~~~~~  196 (287)
                      +|++|||+|....  .++.+ .+.+.+++.+++|+.+++.+.+++.+.|.+++       +++|++||..+..+.++...
T Consensus        81 id~vi~~ag~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~  159 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLD-LTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGE  159 (256)
T ss_pred             CCEEEECCccCCCCCCChhh-CCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcc
Confidence            9999999998643  22323 34477889999999999999999999987532       46999999999989899999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+++|++++++++.++.++.++ +++++|+||+++|++.......      ..........+...+.+|+|+|+++.+++
T Consensus       160 Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~a~~i~~l~  233 (256)
T PRK12745        160 YCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAK------YDALIAKGLVPMPRWGEPEDVARAVAALA  233 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchh------HHhhhhhcCCCcCCCcCHHHHHHHHHHHh
Confidence            9999999999999999999876 9999999999999876532100      00111111122334557999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++...+++|+.
T Consensus       234 ~~~~~~~~G~~  244 (256)
T PRK12745        234 SGDLPYSTGQA  244 (256)
T ss_pred             CCcccccCCCE
Confidence            98888999875

>PRK06914 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-32  Score=239.66  Aligned_cols=233  Identities=24%  Similarity=0.302  Sum_probs=189.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |++|+++||||+||||+++++.|+++|++|++++|+.+..++..++....+ +.++.++.+|++|++++++ ++++.+.+
T Consensus         1 ~~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~   79 (280)
T PRK06914          1 MNKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence            467899999999999999999999999999999999888877766655433 3468899999999999999 89998889


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|........+ .+.+++++.+++|+.+++.+++.++|.|++.+ +++|++||..+..+.++...|+++|+
T Consensus        80 ~~id~vv~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~  158 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEE-IPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKY  158 (280)
T ss_pred             CCeeEEEECCcccccCcccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCCchhHHhHH
Confidence            99999999999876655444 34577889999999999999999999997654 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC---ccchHHHHhhh-----hcCCCCCCHHHHHHHHHH
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK---LEVDQEIRDVQ-----ISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~p~evA~~i~~  273 (287)
                      ++++++++++.++.++ |+++.++||+++|++...........   .....+..+..     .....+.+|+|+|+++++
T Consensus       159 ~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  238 (280)
T PRK06914        159 ALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVE  238 (280)
T ss_pred             HHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHH
Confidence            9999999999998887 99999999999999765322110000   00011111111     123446789999999999


Q ss_pred             hhccCC
Q 042560          274 SACRGD  279 (287)
Q Consensus       274 l~~~~~  279 (287)
                      +++++.
T Consensus       239 ~~~~~~  244 (280)
T PRK06914        239 IAESKR  244 (280)
T ss_pred             HHcCCC
Confidence            999764

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=100.00  E-value=1.8e-32  Score=234.69  Aligned_cols=232  Identities=25%  Similarity=0.250  Sum_probs=186.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      |+++||||+++||++++++|+++|++|++ ..|+.+..++...++...+ .++..+++|++|+++++++++++.++++++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAG-GKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCC-CeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999876 4677777777766665543 358889999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCC-ChhhhhhH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPR-MSFYNASK  201 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~-~~~Y~asK  201 (287)
                      |++|||+|...........+.++++..+++|+.+++.+++.+++.+.++    +|++|++||..+..+.++ +..|+++|
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~~~~Y~~sK  160 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASK  160 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCcccchHhHH
Confidence            9999999986443322334456788999999999999999999988654    378999999998888775 46899999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++.+. +++++++||+++|++.....  .    ....+......+..+.++|+|+|+.+++++++.+.
T Consensus       161 ~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~  234 (247)
T PRK09730        161 GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG--E----PGRVDRVKSNIPMQRGGQPEEVAQAIVWLLSDKAS  234 (247)
T ss_pred             HHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC--C----HHHHHHHHhcCCCCCCcCHHHHHHHHHhhcChhhc
Confidence            99999999999999776 99999999999999754311  0    00011111122233345899999999999999888


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      +++|+.
T Consensus       235 ~~~g~~  240 (247)
T PRK09730        235 YVTGSF  240 (247)
T ss_pred             CccCcE
Confidence            999975

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=3.5e-32  Score=233.71  Aligned_cols=235  Identities=25%  Similarity=0.354  Sum_probs=187.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++++++||||+++||++++++|+++|++|++..|+ .+...+....+...+ .++..+.+|+++.+++.++++++.+
T Consensus         2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   80 (252)
T PRK06077          2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENG-GEGIGVLADVSTREGCETLAKATID   80 (252)
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcC-CeeEEEEeccCCHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999887754 444444444554443 3577889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      .++++|++|||+|.....+..+. +.+.+++.+++|+.+++.+++++.|.|++ .|++|++||..+..+.++...|+++|
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~Y~~sK  158 (252)
T PRK06077         81 RYGVADILVNNAGLGLFSPFLNV-DDKLIDKHISTDFKSVIYCSQELAKEMRE-GGAIVNIASVAGIRPAYGLSIYGAMK  158 (252)
T ss_pred             HcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHhHhCHHHHHHHHHHHHHhhc-CcEEEEEcchhccCCCCCchHHHHHH
Confidence            99999999999998766554443 33567889999999999999999999876 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ++++++++.++.++++.++++.+.||+++|++..........   ..++..+.......+.+|||+|+.+++++++  .+
T Consensus       159 ~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~--~~  233 (252)
T PRK06077        159 AAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGM---SEKEFAEKFTLMGKILDPEEVAEFVAAILKI--ES  233 (252)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccc---cHHHHHHhcCcCCCCCCHHHHHHHHHHHhCc--cc
Confidence            999999999999997779999999999999986432211110   0122222222333456899999999999964  34


Q ss_pred             ccCC
Q 042560          282 LTQP  285 (287)
Q Consensus       282 itG~  285 (287)
                      ++|+
T Consensus       234 ~~g~  237 (252)
T PRK06077        234 ITGQ  237 (252)
T ss_pred             cCCC
Confidence            5554

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=4.5e-32  Score=231.46  Aligned_cols=221  Identities=29%  Similarity=0.387  Sum_probs=188.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++++++||||++|||++++++|+++|++|++++|+.++.++..+++...+ .++.++.+|+++.++++++++++.++
T Consensus         3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (239)
T PRK07666          3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNE   81 (239)
T ss_pred             ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999888877777765443 46889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||+|........+. +.+++++.+++|+.+++.+.+.+.|.+.+++ +++|++||..+..+.++...|+++|
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK  160 (239)
T PRK07666         82 LGSIDILINNAGISKFGKFLEL-DPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASK  160 (239)
T ss_pred             cCCccEEEEcCccccCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCCcchHHHH
Confidence            9999999999998765544443 4477889999999999999999999887654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++++.+++.++.++++. ++++.|.||+++|++........              .....+.+|+|+|+.+..+++.+.
T Consensus       161 ~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~--------------~~~~~~~~~~~~a~~~~~~l~~~~  225 (239)
T PRK07666        161 FGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLGLTD--------------GNPDKVMQPEDLAEFIVAQLKLNK  225 (239)
T ss_pred             HHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhccccc--------------cCCCCCCCHHHHHHHHHHHHhCCC
Confidence            99999999999999877 99999999999999765321000              011234579999999999998763

>PRK08267 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-32  Score=235.44  Aligned_cols=218  Identities=28%  Similarity=0.319  Sum_probs=182.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh-cCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH-FGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~~~i  126 (287)
                      |+++||||++|||++++++|+++|++|++++|+.+.+++..+.+.   +.++.++++|++|.+++.++++.+.++ ++++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            689999999999999999999999999999999988777766543   346889999999999999999988776 7899


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||||......+.+. +.+++++.+++|+.+++.+++.+.+.|+++ +++||++||..+..+.++...|+++|++++
T Consensus        79 d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~  157 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDI-PLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVR  157 (260)
T ss_pred             CEEEECCCCCCCCccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCchhhHHHHHHHH
Confidence            999999998776555443 457889999999999999999999999765 489999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++.++.++.+. |++++|.||+++|++.....         .+.............+|+|+|++++.++.++
T Consensus       158 ~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~  222 (260)
T PRK08267        158 GLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS---------NEVDAGSTKRLGVRLTPEDVAEAVWAAVQHP  222 (260)
T ss_pred             HHHHHHHHHhcccCcEEEEEecCCcCCccccccc---------chhhhhhHhhccCCCCHHHHHHHHHHHHhCC
Confidence            9999999999887 99999999999999865310         0011111111222357999999999999643

>PRK06181 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-32  Score=235.40  Aligned_cols=229  Identities=38%  Similarity=0.612  Sum_probs=190.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++||||+||||+++++.|+++|++|++++|+..+.++..+.+...+ .++.++.+|++|.++++++++++.++++++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999999888777777666544 368889999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      |++|||+|........+..+.+.+++.+++|+.+++.+++.+.|.|.++.+++|++||..+..+.++...|+++|+++++
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~  159 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALHG  159 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCccHHHHHHHHHHH
Confidence            99999999876655544324577889999999999999999999998777999999999999899999999999999999


Q ss_pred             HHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          207 LYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       207 ~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      +++.++.++.+. ++++++.||+++|++.+..........      ...-....++.+|+|+|+.++++++...+.+
T Consensus       160 ~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~------~~~~~~~~~~~~~~dva~~i~~~~~~~~~~~  230 (263)
T PRK06181        160 FFDSLRIELADDGVAVTVVCPGFVATDIRKRALDGDGKPL------GKSPMQESKIMSAEECAEAILPAIARRKRLL  230 (263)
T ss_pred             HHHHHHHHhhhcCceEEEEecCccccCcchhhcccccccc------ccccccccCCCCHHHHHHHHHHHhhCCCCEE
Confidence            999999999877 999999999999998765322111000      0000111256789999999999998765544

>PRK08251 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-32  Score=232.34  Aligned_cols=217  Identities=25%  Similarity=0.304  Sum_probs=184.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|+++||||++|||++++++|+++|++|++++|+.++.++..+.+... .+.++.++++|++|.++++++++++.+++++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999998888777666543 2457899999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC-ChhhhhhHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR-MSFYNASKAA  203 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~-~~~Y~asKaa  203 (287)
                      +|++|||+|+....+..+ .+.+.+++.+++|+.+++.+.+.++|.|++.+ +++|++||..+..+.++ ...|+++|++
T Consensus        82 id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a  160 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGT-GKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAG  160 (248)
T ss_pred             CCEEEECCCcCCCCCcCc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCcccHHHHHHH
Confidence            999999999876654433 34466788999999999999999999987644 89999999999888775 6889999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++++.++.++.+. ++|++|+||+++|++.+....                  ...+.+|++.|+.++..++.+...+
T Consensus       161 ~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~------------------~~~~~~~~~~a~~i~~~~~~~~~~~  222 (248)
T PRK08251        161 VASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAKS------------------TPFMVDTETGVKALVKAIEKEPGRA  222 (248)
T ss_pred             HHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcccc------------------CCccCCHHHHHHHHHHHHhcCCCeE
Confidence            999999999999876 999999999999998754210                  1123469999999999998765443

>PRK06179 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-32  Score=237.29  Aligned_cols=223  Identities=28%  Similarity=0.364  Sum_probs=182.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+||||++++++|+++|++|++++|+.++.+.         ...+.++++|++|+++++++++.+.+++++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   73 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP---------IPGVELLELDVTDDASVQAAVDEVIARAGR   73 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999998765432         124788999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||+|........+ .+.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.+....|+++|+++
T Consensus        74 ~d~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  152 (270)
T PRK06179         74 IDVLVNNAGVGLAGAAEE-SSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPAPYMALYAASKHAV  152 (270)
T ss_pred             CCEEEECCCCCCCcCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCCCCccHHHHHHHHH
Confidence            999999999987665544 34578899999999999999999999997754 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccch--HH-HHhhh-hcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVD--QE-IRDVQ-ISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~--~~-~~~~~-~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +++++.++.|+++. |++++|+||+++|++...............  .+ ..... .......+|+++|+.++++++++
T Consensus       153 ~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~  231 (270)
T PRK06179        153 EGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTVVKAALGP  231 (270)
T ss_pred             HHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCC
Confidence            99999999999877 999999999999998764322111100000  00 01111 11223457999999999999864

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=100.00  E-value=3.7e-32  Score=233.13  Aligned_cols=236  Identities=31%  Similarity=0.410  Sum_probs=196.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++++|++++++|+++|++|++++|+.++.++..+.+...+ .++.++.+|++|.++++++++++.+++
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999999888777777766544 358899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y~asK  201 (287)
                      +++|++|||+|.....+..+. +.+++++.++.|+.+++.+.+.++|.|.+++ +++|++||..+. .+.++...|+++|
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~~y~~sK  160 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEM-DDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASK  160 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCCccHHHHHH
Confidence            999999999998766544333 4467889999999999999999999986644 799999999988 7888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.++.+. ++++.+.||.++|+........      ..........+...+.+++|+|+.+++++++..+
T Consensus       161 ~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~  234 (251)
T PRK12826        161 AGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA------QWAEAIAAAIPLGRLGEPEDIAAAVLFLASDEAR  234 (251)
T ss_pred             HHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch------HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccc
Confidence            99999999999999766 9999999999999976432110      0011122222333456899999999999998888


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      +++|+.+
T Consensus       235 ~~~g~~~  241 (251)
T PRK12826        235 YITGQTL  241 (251)
T ss_pred             CcCCcEE
Confidence            9999764

>PRK06197 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.4e-32  Score=239.53  Aligned_cols=233  Identities=20%  Similarity=0.217  Sum_probs=181.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +..++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++... ++.++.++.+|++|.++++++++++
T Consensus        10 ~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~   89 (306)
T PRK06197         10 DIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL   89 (306)
T ss_pred             ccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence            446789999999999999999999999999999999999988877766666543 2346888999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC---------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL---------  189 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~---------  189 (287)
                      .++++++|++|||||.....  .. .+.+.++..+++|+.+++.+++.++|.|++.+ ++||++||..+..         
T Consensus        90 ~~~~~~iD~li~nAg~~~~~--~~-~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~  166 (306)
T PRK06197         90 RAAYPRIDLLINNAGVMYTP--KQ-TTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDL  166 (306)
T ss_pred             HhhCCCCCEEEECCccccCC--Cc-cCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCcccc
Confidence            99999999999999986443  12 24478899999999999999999999997654 7999999986532         


Q ss_pred             ----CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEE--EeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC
Q 042560          190 ----PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ  262 (287)
Q Consensus       190 ----~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~--i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (287)
                          +.++...|++||++++++++.+++++++. ++|++  ++||+++|++.+....       ..........+ ....
T Consensus       167 ~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~-------~~~~~~~~~~~-~~~~  238 (306)
T PRK06197        167 QWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPR-------ALRPVATVLAP-LLAQ  238 (306)
T ss_pred             CcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcH-------HHHHHHHHHHh-hhcC
Confidence                23456789999999999999999999765 66655  5799999998764211       01111111111 1235


Q ss_pred             CHHHHHHHHHHhhccCCccccCC
Q 042560          263 PTEECAKAIVNSACRGDRYLTQP  285 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~~~~itG~  285 (287)
                      +|++-+...++++.++ ++.+|.
T Consensus       239 ~~~~g~~~~~~~~~~~-~~~~g~  260 (306)
T PRK06197        239 SPEMGALPTLRAATDP-AVRGGQ  260 (306)
T ss_pred             CHHHHHHHHHHHhcCC-CcCCCe
Confidence            6888888888777643 445554

>PRK09135 pteridine reductase; Provisional

Probab=100.00  E-value=6.6e-32  Score=231.35  Aligned_cols=235  Identities=23%  Similarity=0.263  Sum_probs=187.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++++++||||+|+||++++++|+++|++|++++|+. ...++..+.+....+..+.++.+|++|.++++++++++.++
T Consensus         3 ~~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          3 TDSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35779999999999999999999999999999999864 44555555554444445888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||+|.....+..+ .+.++++..+++|+.+++.+.+++.|.+.+++|.+++++|..+..+.++...|+++|+
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~  161 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGS-ITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAAKA  161 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhh-CCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCCCchhHHHHHH
Confidence            999999999999876544333 2346788899999999999999999999877789999998888888888999999999


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          203 AKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       203 al~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      +++.+++.++.++.++++++++.||+++|++....+.      ....+......+....++|+|+|+++++++.+ .+++
T Consensus       162 ~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~-~~~~  234 (249)
T PRK09135        162 ALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFD------EEARQAILARTPLKRIGTPEDIAEAVRFLLAD-ASFI  234 (249)
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCC------HHHHHHHHhcCCcCCCcCHHHHHHHHHHHcCc-cccc
Confidence            9999999999999766999999999999997542110      00111111111223356799999999988875 4566


Q ss_pred             cCCC
Q 042560          283 TQPS  286 (287)
Q Consensus       283 tG~~  286 (287)
                      +|+.
T Consensus       235 ~g~~  238 (249)
T PRK09135        235 TGQI  238 (249)
T ss_pred             cCcE
Confidence            7764

>PRK07074 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-32  Score=234.04  Aligned_cols=228  Identities=20%  Similarity=0.262  Sum_probs=187.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||++++++|+++|++|++++|+.++.++..+.+.   ..++..+++|++|.+++.++++++.++++++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG---DARFVPVACDLTDAASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999999888777666552   2358889999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|.....+..+ .+.+++.+.+++|+.+++.+.+++++.+.+++ +++|++||..+..+ .+...|+++|++++
T Consensus        79 d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-~~~~~y~~sK~a~~  156 (257)
T PRK07074         79 DVLVANAGAARAASLHD-TTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-LGHPAYSAAKAGLI  156 (257)
T ss_pred             CEEEECCCCCCCCChhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-CCCcccHHHHHHHH
Confidence            99999999876554443 34477888899999999999999999887654 89999999876543 46778999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      .+++.++.++++. ++|+.++||+++|++.......       .++..+.   ..+...+..|+|+|+++++++++..++
T Consensus       157 ~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~  229 (257)
T PRK07074        157 HYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAA-------NPQVFEELKKWYPLQDFATPDDVANAVLFLASPAARA  229 (257)
T ss_pred             HHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccccc-------ChHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCchhcC
Confidence            9999999999887 9999999999999875431111       1122222   223344567999999999999988889


Q ss_pred             ccCCC
Q 042560          282 LTQPS  286 (287)
Q Consensus       282 itG~~  286 (287)
                      ++|+.
T Consensus       230 ~~g~~  234 (257)
T PRK07074        230 ITGVC  234 (257)
T ss_pred             cCCcE
Confidence            99875

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=100.00  E-value=7.4e-32  Score=230.62  Aligned_cols=236  Identities=30%  Similarity=0.361  Sum_probs=192.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||+|+||++++++|+++|++|+++.|+.. ..++..++++..+ .++..+.+|+++.+++.++++++.+
T Consensus         1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALG-GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999988888655 3455555554433 4688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||+|........+. +.+.+++.++.|+.+++.+.+.+.+.+.+.+ +++|++||..+..+.++...|+++
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~~~y~~s  158 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRM-KEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAAS  158 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCCchhHHH
Confidence            99999999999998766544443 3467889999999999999999999987654 799999999998888999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++++++.++.++.+. +++++++||+++|++......       ..........+.....+|+|+|+.+.+++.+.+
T Consensus       159 k~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~  231 (248)
T PRK05557        159 KAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPE-------DVKEAILAQIPLGRLGQPEEIASAVAFLASDEA  231 (248)
T ss_pred             HHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccCh-------HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccc
Confidence            999999999999999876 999999999999987643210       001111112222334679999999999999888


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      .+++|+.+
T Consensus       232 ~~~~g~~~  239 (248)
T PRK05557        232 AYITGQTL  239 (248)
T ss_pred             CCccccEE
Confidence            89999753

>PRK07102 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.2e-32  Score=231.76  Aligned_cols=217  Identities=24%  Similarity=0.271  Sum_probs=184.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.++.++..+.+...++.++.++++|++|+++++++++++.+   .+|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---LPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---cCC
Confidence            68999999999999999999999999999999998887777776655555789999999999999999988765   469


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      ++|||+|........+ .+.+++.+.+++|+.+++.+.+++.|.|.+++ +++|++||..+..+.++...|+++|+++++
T Consensus        79 ~vv~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  157 (243)
T PRK07102         79 IVLIAVGTLGDQAACE-ADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTA  157 (243)
T ss_pred             EEEECCcCCCCccccc-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCCcccHHHHHHHHH
Confidence            9999999876554433 34567788999999999999999999998654 899999999999898999999999999999


Q ss_pred             HHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCC
Q 042560          207 LYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQP  285 (287)
Q Consensus       207 ~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~  285 (287)
                      +++.++.|+.+. ++|++|+||+++|++..+..                 .+...+.+|+|+|+.++++++++...+..+
T Consensus       158 ~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~~-----------------~~~~~~~~~~~~a~~i~~~~~~~~~~i~~~  220 (243)
T PRK07102        158 FLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGLK-----------------LPGPLTAQPEEVAKDIFRAIEKGKDVIYTP  220 (243)
T ss_pred             HHHHHHHHhhccCcEEEEEecCcccChhhhccC-----------------CCccccCCHHHHHHHHHHHHhCCCCEEEcC
Confidence            999999999877 99999999999999754311                 112235679999999999999876655443

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=100.00  E-value=2.3e-32  Score=242.64  Aligned_cols=227  Identities=20%  Similarity=0.165  Sum_probs=176.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|+++||||++|||++++++|+++| ++|++++|+.++.++..+++... +.++..+.+|++|.++++++++++.++++
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMP-KDSYTIMHLDLGSLDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            48899999999999999999999999 99999999998887777666432 34678889999999999999999988889


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCC-----------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLP-----------  190 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~-----------  190 (287)
                      ++|++|||||+..........+.+++++++++|+.+++.+++.++|.|+++   .|+||++||..+..+           
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~  160 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKAN  160 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccc
Confidence            999999999975432111122447899999999999999999999999765   379999999876421           


Q ss_pred             ----------------------CCCChhhhhhHHHHHHHHHHHHHHhC-CC-eEEEEEeCCcc-cCCCcCCcccCcCCCc
Q 042560          191 ----------------------PPRMSFYNASKAAKIALYETLRVEFG-GD-IGITIVTPGLI-ESEITGGKFLNKNGKL  245 (287)
Q Consensus       191 ----------------------~~~~~~Y~asKaal~~~~~~la~e~~-~~-i~v~~i~PG~v-~t~~~~~~~~~~~~~~  245 (287)
                                            ..++.+|++||+|+..+++.+++++. +. |+|++|+||.+ +|++.+......   .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~---~  237 (314)
T TIGR01289       161 LGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLF---R  237 (314)
T ss_pred             ccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHH---H
Confidence                                  12456799999999999999999985 34 99999999999 699875321000   0


Q ss_pred             cchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          246 EVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ..... ..+.. ...+.+||+.|+.++.++.+.
T Consensus       238 ~~~~~-~~~~~-~~~~~~~~~~a~~l~~~~~~~  268 (314)
T TIGR01289       238 TLFPP-FQKYI-TKGYVSEEEAGERLAQVVSDP  268 (314)
T ss_pred             HHHHH-HHHHH-hccccchhhhhhhhHHhhcCc
Confidence            00001 11111 112467999999999988764

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK05693 short chain dehydrogenase; Provisional

Probab=100.00  E-value=8.9e-32  Score=234.41  Aligned_cols=223  Identities=26%  Similarity=0.303  Sum_probs=180.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+||||++++++|+++|++|++++|+.+.+++..+    .   .+..+.+|++|.++++++++++.+.++++|
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA----A---GFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            689999999999999999999999999999999876654322    1   366788999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      ++|||+|.....+..+. +.+++++.+++|+.+++.+++.++|.|+++.|++|++||..+..+.+....|+++|++++++
T Consensus        75 ~vi~~ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~~~  153 (274)
T PRK05693         75 VLINNAGYGAMGPLLDG-GVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHAL  153 (274)
T ss_pred             EEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCCccHHHHHHHHHHHH
Confidence            99999998766555443 45788999999999999999999999987669999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCc------CCCccchHHHHhhhh--cCCCCCCHHHHHHHHHHhhccC
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNK------NGKLEVDQEIRDVQI--SLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++.++.|+++. |+|++++||+++|++........      ........+......  ......+|+++|+.++..+..+
T Consensus       154 ~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~  233 (274)
T PRK05693        154 SDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQS  233 (274)
T ss_pred             HHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCC
Confidence            99999999877 99999999999999876432111      011111111111111  1122347999999999998754

>PRK07577 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-32  Score=230.99  Aligned_cols=224  Identities=22%  Similarity=0.269  Sum_probs=180.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++|+++||||++|||++++++|+++|++|++++|+....         .   ...++.+|++|.++++++++++.+.+ 
T Consensus         1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~---------~---~~~~~~~D~~~~~~~~~~~~~~~~~~-   67 (234)
T PRK07577          1 MSSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD---------F---PGELFACDLADIEQTAATLAQINEIH-   67 (234)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc---------c---CceEEEeeCCCHHHHHHHHHHHHHhC-
Confidence            3578999999999999999999999999999999986540         0   12467899999999999999988876 


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||+|.....+..+. +.+++++.+++|+.+++.+.+.++|.|++.+ |++|++||.. .++.+....|+++|++
T Consensus        68 ~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~-~~~~~~~~~Y~~sK~a  145 (234)
T PRK07577         68 PVDAIVNNVGIALPQPLGKI-DLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRA-IFGALDRTSYSAAKSA  145 (234)
T ss_pred             CCcEEEECCCCCCCCChHHC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcccc-ccCCCCchHHHHHHHH
Confidence            68999999998766554443 4478889999999999999999999997654 8999999985 4577788999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++++.++.++.+. |++++|+||+++|++.........   ....... ...+..++.+|+|+|+.++++++++..++
T Consensus       146 ~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~a~~~~~l~~~~~~~~  221 (234)
T PRK07577        146 LVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGS---EEEKRVL-ASIPMRRLGTPEEVAAAIAFLLSDDAGFI  221 (234)
T ss_pred             HHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccch---hHHHHHh-hcCCCCCCcCHHHHHHHHHHHhCcccCCc
Confidence            999999999999877 999999999999998653211110   0001111 11223334589999999999999888899


Q ss_pred             cCCCC
Q 042560          283 TQPSW  287 (287)
Q Consensus       283 tG~~~  287 (287)
                      ||+.+
T Consensus       222 ~g~~~  226 (234)
T PRK07577        222 TGQVL  226 (234)
T ss_pred             cceEE
Confidence            99753

>PRK07806 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-31  Score=228.41  Aligned_cols=227  Identities=25%  Similarity=0.263  Sum_probs=179.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||+||||++++++|+++|++|++++|+.+ ..+...++++..+ .++..+++|++|.++++++++++.++
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999754 4555555555433 35788999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----CCCCCChhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----LPPPRMSFY  197 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----~~~~~~~~Y  197 (287)
                      ++++|++|||+|.....       ...+...+++|+.+++.+++.+.|.|.+ +|++|++||..+.     .+.+.+..|
T Consensus        82 ~~~~d~vi~~ag~~~~~-------~~~~~~~~~vn~~~~~~l~~~~~~~~~~-~~~iv~isS~~~~~~~~~~~~~~~~~Y  153 (248)
T PRK07806         82 FGGLDALVLNASGGMES-------GMDEDYAMRLNRDAQRNLARAALPLMPA-GSRVVFVTSHQAHFIPTVKTMPEYEPV  153 (248)
T ss_pred             CCCCcEEEECCCCCCCC-------CCCcceeeEeeeHHHHHHHHHHHhhccC-CceEEEEeCchhhcCccccCCccccHH
Confidence            89999999999864321       1235678899999999999999998864 5799999996543     234557789


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|++++.+++.++.++++. |+||+|.||+++|++...+.....     +....+...+..++.+|+|+|++++++++
T Consensus       154 ~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~dva~~~~~l~~  228 (248)
T PRK07806        154 ARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLN-----PGAIEARREAAGKLYTVSEFAAEVARAVT  228 (248)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCC-----HHHHHHHHhhhcccCCHHHHHHHHHHHhh
Confidence            999999999999999999887 999999999999987653321110     11111222344567789999999999998


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                        +.+++|+.
T Consensus       229 --~~~~~g~~  236 (248)
T PRK07806        229 --APVPSGHI  236 (248)
T ss_pred             --ccccCccE
Confidence              45778874

>PRK12828 short chain dehydrogenase; Provisional

Probab=100.00  E-value=9.1e-32  Score=228.95  Aligned_cols=226  Identities=25%  Similarity=0.286  Sum_probs=189.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||+|+||++++++|+++|++|++++|+.++.++..+++...   .+..+.+|++|.++++++++++.+
T Consensus         2 ~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~   78 (239)
T PRK12828          2 EHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD---ALRIGGIDLVDPQAARRAVDEVNR   78 (239)
T ss_pred             CCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc---CceEEEeecCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999988776665555432   356778999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++||++|........+. +.+++++.+++|+.+++.++++++|.+.+++ +++|++||..+..+.++...|+++
T Consensus        79 ~~~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~s  157 (239)
T PRK12828         79 QFGRLDALVNIAGAFVWGTIADG-DADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAAA  157 (239)
T ss_pred             HhCCcCEEEECCcccCcCChhhC-CHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCCCCcchhHHH
Confidence            99999999999998765443333 4477888999999999999999999987644 899999999998888889999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++.+++.++.++.+. ++++.+.||+++|++.......         +      ...+..+++|+|+.+++++++.+
T Consensus       158 k~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~~---------~------~~~~~~~~~dva~~~~~~l~~~~  222 (239)
T PRK12828        158 KAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMPD---------A------DFSRWVTPEQIAAVIAFLLSDEA  222 (239)
T ss_pred             HHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCCc---------h------hhhcCCCHHHHHHHHHHHhCccc
Confidence            999999999999998776 9999999999999864321100         0      11224579999999999999888


Q ss_pred             ccccCCC
Q 042560          280 RYLTQPS  286 (287)
Q Consensus       280 ~~itG~~  286 (287)
                      .+++|+.
T Consensus       223 ~~~~g~~  229 (239)
T PRK12828        223 QAITGAS  229 (239)
T ss_pred             ccccceE
Confidence            8888875

>PRK07201 short chain dehydrogenase; Provisional

Probab=100.00  E-value=1e-31  Score=260.82  Aligned_cols=224  Identities=29%  Similarity=0.360  Sum_probs=190.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...+ .++.++.+|++|.++++++++++.+
T Consensus       366 ~~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        366 RGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG-GTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999998888887776544 3688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCC-CCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++++|++|||||........+.. +.+++++++++|+.+++.+++.++|.|++++ |+||++||..+..+.++.+.|++
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~  524 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNAPRFSAYVA  524 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCcchHHH
Confidence            999999999999986544332221 2356889999999999999999999997655 89999999999989999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+++++++++++.|+.+. |+||+|+||+++|++.....                .....+..+||++|+.++..+.++
T Consensus       525 sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~~~~~~~~~~~~a~~i~~~~~~~  588 (657)
T PRK07201        525 SKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RYNNVPTISPEEAADMVVRAIVEK  588 (657)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------cccCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999877 99999999999999865310                011234568999999999987655


Q ss_pred             Cccc
Q 042560          279 DRYL  282 (287)
Q Consensus       279 ~~~i  282 (287)
                      ...+
T Consensus       589 ~~~~  592 (657)
T PRK07201        589 PKRI  592 (657)
T ss_pred             CcEE
Confidence            4433

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=100.00  E-value=2e-31  Score=229.01  Aligned_cols=235  Identities=33%  Similarity=0.430  Sum_probs=187.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH--HHHHHHHHHhcCC-CeeEEEeecCCC-HHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ--LREVADQAELMGS-PFALAIPADVSK-VEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~--~~~~~~~~~~~~~-~~~~~~~~D~~~-~~~v~~~~~~  118 (287)
                      +++.+|+++||||++|||+++|++|+++|++|+++.|+.+.  .+...+... ..+ ..+....+|+++ .++++.+++.
T Consensus         1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dvs~~~~~v~~~~~~   79 (251)
T COG1028           1 MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK-EAGGGRAAAVAADVSDDEESVEALVAA   79 (251)
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH-hcCCCcEEEEEecCCCCHHHHHHHHHH
Confidence            35789999999999999999999999999999988887664  344444333 222 257888899998 9999999999


Q ss_pred             HHHhcCCccEEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC-hh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM-SF  196 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~-~~  196 (287)
                      +.+.+|++|++|||||..... +..+. +.+++++.+++|+.+++.+.+.+.|.++++  +||++||..+. +.++. ..
T Consensus        80 ~~~~~g~id~lvnnAg~~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~--~Iv~isS~~~~-~~~~~~~~  155 (251)
T COG1028          80 AEEEFGRIDILVNNAGIAGPDAPLEEL-TEEDWDRVIDVNLLGAFLLTRAALPLMKKQ--RIVNISSVAGL-GGPPGQAA  155 (251)
T ss_pred             HHHHcCCCCEEEECCCCCCCCCChhhC-CHHHHHHHHHHhHHHHHHHHHHHHHhhhhC--eEEEECCchhc-CCCCCcch
Confidence            999999999999999998763 55554 348999999999999999999888888854  99999999999 87774 99


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|+.+. |+|++|+||+++|++........  ... .....+.. +..+...|+++++.+.++.
T Consensus       156 Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~~~~--~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~  231 (251)
T COG1028         156 YAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALESAE--LEA-LKRLAARI-PLGRLGTPEEVAAAVAFLA  231 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhhhhh--hhH-HHHHHhcC-CCCCCcCHHHHHHHHHHHc
Confidence            9999999999999999998887 99999999999999987543222  000 11111111 2225667999999999888


Q ss_pred             ccC-CccccCCC
Q 042560          276 CRG-DRYLTQPS  286 (287)
Q Consensus       276 ~~~-~~~itG~~  286 (287)
                      +.. ..+++|+.
T Consensus       232 ~~~~~~~~~g~~  243 (251)
T COG1028         232 SDEAASYITGQT  243 (251)
T ss_pred             CcchhccccCCE
Confidence            764 66777753

>PRK07775 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.9e-31  Score=229.85  Aligned_cols=230  Identities=26%  Similarity=0.289  Sum_probs=184.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +...|+++||||++|||++++++|+++|++|++++|+.+.+++..+.+...+ .++.++.+|++|++++.++++++.+.+
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG-GEAVAFPLDVTDPDSVKSFVAQAEEAL   85 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            3567899999999999999999999999999999999887776666655444 368888999999999999999999989


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||+|........+. +.+.+++.+++|+.+++.++++++|.|.++ .|++|++||..+..+.++...|+++|+
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  164 (274)
T PRK07775         86 GEIEVLVSGAGDTYFGKLHEI-STEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQRPHMGAYGAAKA  164 (274)
T ss_pred             CCCCEEEECCCcCCCcccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCcchHHHHHH
Confidence            999999999998765444332 346788889999999999999999988654 489999999999888888899999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh--hhcCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +++++++.++.++.+. |++++++||+++|++........   .....+....  ......+..|||+|++++++++.+
T Consensus       165 a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~  240 (274)
T PRK07775        165 GLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEV---IGPMLEDWAKWGQARHDYFLRASDLARAITFVAETP  240 (274)
T ss_pred             HHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhh---hhHHHHHHHHhcccccccccCHHHHHHHHHHHhcCC
Confidence            9999999999999776 99999999999999754321110   0000011111  111233567999999999999864

>PRK12829 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-31  Score=229.21  Aligned_cols=240  Identities=29%  Similarity=0.394  Sum_probs=190.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||+++||++++++|+++|++|++++|+.+..++..+.....   ++..+.+|++|+++++++++++.+.
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~   83 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFDTAVER   83 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999987776655544321   5788999999999999999999999


Q ss_pred             cCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhh
Q 042560          123 FGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       123 ~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++|++|||+|.. ....... .+.+.+.+.++.|+.+++.+.+.+++.+.+.+  ++++++||..+..+.+++..|+.
T Consensus        84 ~~~~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~~  162 (264)
T PRK12829         84 FGGLDVLVNNAGIAGPTGGIDE-ITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAA  162 (264)
T ss_pred             hCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhHH
Confidence            99999999999987 3333333 34477889999999999999999999886543  57889999998888899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccc-hHHHHh---hhhcCCCCCCHHHHHHHHHHh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEV-DQEIRD---VQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +|++++++++.++.++++. ++++++.||+++|++....+......... ......   ...+..++.+++++|++++++
T Consensus       163 ~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l  242 (264)
T PRK12829        163 SKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFL  242 (264)
T ss_pred             HHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999998766 99999999999999875443211100000 011111   112333466899999999999


Q ss_pred             hccCCccccCCC
Q 042560          275 ACRGDRYLTQPS  286 (287)
Q Consensus       275 ~~~~~~~itG~~  286 (287)
                      +++...+++|+.
T Consensus       243 ~~~~~~~~~g~~  254 (264)
T PRK12829        243 ASPAARYITGQA  254 (264)
T ss_pred             cCccccCccCcE
Confidence            987767778874

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.4e-33  Score=216.43  Aligned_cols=227  Identities=24%  Similarity=0.346  Sum_probs=195.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +.+|-+++|||+.+|+|++.+++|+.+|+.|++.+-..++-++.++++    +.++.+.++|++++++++.++..++.+|
T Consensus         6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel----g~~~vf~padvtsekdv~aala~ak~kf   81 (260)
T KOG1199|consen    6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL----GGKVVFTPADVTSEKDVRAALAKAKAKF   81 (260)
T ss_pred             hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh----CCceEEeccccCcHHHHHHHHHHHHhhc
Confidence            458999999999999999999999999999999999888877777776    3579999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCC-----CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCCCCCC
Q 042560          124 GRLDHLVTNAGVVPMCL-----FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPP  191 (287)
Q Consensus       124 ~~idvli~nag~~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~~~~~  191 (287)
                      |++|.+|||||+.....     .....+.|++++.+++|+.+.++.+++..-.|.++       .|.||+..|.+++.+.
T Consensus        82 grld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq  161 (260)
T KOG1199|consen   82 GRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQ  161 (260)
T ss_pred             cceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCc
Confidence            99999999999884322     12234678899999999999999999999888542       2899999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----CCCCCHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----LPVQPTEE  266 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~e  266 (287)
                      .++.+|++||+++.+|+.-+++++... ||++.|.||.++||+....          ++.........    .+++.|.|
T Consensus       162 ~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllssl----------pekv~~fla~~ipfpsrlg~p~e  231 (260)
T KOG1199|consen  162 TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSSL----------PEKVKSFLAQLIPFPSRLGHPHE  231 (260)
T ss_pred             cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhhh----------hHHHHHHHHHhCCCchhcCChHH
Confidence            999999999999999999999999988 9999999999999998753          23333333333    44678999


Q ss_pred             HHHHHHHhhccCCccccCCC
Q 042560          267 CAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       267 vA~~i~~l~~~~~~~itG~~  286 (287)
                      .|..+-...++  -|+||+.
T Consensus       232 yahlvqaiien--p~lngev  249 (260)
T KOG1199|consen  232 YAHLVQAIIEN--PYLNGEV  249 (260)
T ss_pred             HHHHHHHHHhC--cccCCeE
Confidence            99999999876  5888874

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=228.39  Aligned_cols=212  Identities=20%  Similarity=0.192  Sum_probs=166.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++||||++|||++++++|+++|  ..|++..|+....         ....++.++++|+++.++++++.    +++++
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~Dls~~~~~~~~~----~~~~~   67 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD---------FQHDNVQWHALDVTDEAEIKQLS----EQFTQ   67 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc---------cccCceEEEEecCCCHHHHHHHH----HhcCC
Confidence            479999999999999999999985  5666666654321         11236888999999999988753    45689


Q ss_pred             ccEEEEccccCCCCCC-----CCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC---CCCCChh
Q 042560          126 LDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL---PPPRMSF  196 (287)
Q Consensus       126 idvli~nag~~~~~~~-----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~---~~~~~~~  196 (287)
                      +|++|||+|.......     .+..+.+.+.+.+++|+.+++.+++.++|.|++++ ++++++||..+..   +.+++..
T Consensus        68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~~~~~~~  147 (235)
T PRK09009         68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNRLGGWYS  147 (235)
T ss_pred             CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCCCCCcch
Confidence            9999999998754211     11223356788999999999999999999997654 7999998866533   3466789


Q ss_pred             hhhhHHHHHHHHHHHHHHhCC--C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGG--D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~--~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      |+++|+++++|+++++.|+.+  . |+||+|+||+++|++......               ..+...+.+|||+|+.+++
T Consensus       148 Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~~---------------~~~~~~~~~~~~~a~~~~~  212 (235)
T PRK09009        148 YRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQQ---------------NVPKGKLFTPEYVAQCLLG  212 (235)
T ss_pred             hhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchhh---------------ccccCCCCCHHHHHHHHHH
Confidence            999999999999999999875  4 999999999999998753210               1122335689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      ++++.+++++|+.+
T Consensus       213 l~~~~~~~~~g~~~  226 (235)
T PRK09009        213 IIANATPAQSGSFL  226 (235)
T ss_pred             HHHcCChhhCCcEE
Confidence            99999899999853

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=100.00  E-value=5.7e-31  Score=224.84  Aligned_cols=235  Identities=28%  Similarity=0.398  Sum_probs=194.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++++++||||+++||+++++.|+++|++|++++|+.++.+.....++..+ .++.++.+|++|++++.++++++.+.
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG-GEARVLVFDVSDEAAVRALIEAAVEA   79 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999888877777666544 35888899999999999999999988


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++||++|.....+..+. +.+++++.++.|+.+++.+.+++.|.|.+.+ +++|++||..+..+.+....|+.+|
T Consensus        80 ~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk  158 (246)
T PRK05653         80 FGALDILVNNAGITRDALLPRM-SEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAK  158 (246)
T ss_pred             hCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCCcHhHhHH
Confidence            8999999999998766444333 4467888999999999999999999986655 7999999999888888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+++.+++++.+. +++++++||.+.+++.....       ....+......+...+.+|+|+|+.+++++++.+.
T Consensus       159 ~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~  231 (246)
T PRK05653        159 AGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLP-------EEVKAEILKEIPLGRLGQPEEVANAVAFLASDAAS  231 (246)
T ss_pred             HHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhh-------HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhc
Confidence            99999999999999876 99999999999998764310       00011111122233456799999999999998888


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      +++|+.
T Consensus       232 ~~~g~~  237 (246)
T PRK05653        232 YITGQV  237 (246)
T ss_pred             CccCCE
Confidence            888875

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=1.1e-30  Score=223.37  Aligned_cols=233  Identities=27%  Similarity=0.392  Sum_probs=190.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||+|+||++++++|+++|++|++..|+.. ..+...+.....+ .++.++.+|++|.++++++++++.+.
T Consensus         3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALG-RRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-CceEEEECCcCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999888666544 4444545544433 36889999999999999999999988


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++||++|......+.+. +.+.+++.++.|+.+++.+.+.+.+.+++.+ +++|++||..+..+.++...|+.+|
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~y~~sK  160 (249)
T PRK12825         82 FGRIDILVNNAGIFEDKPLADM-SDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAK  160 (249)
T ss_pred             cCCCCEEEECCccCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCchHHHHHH
Confidence            8999999999997665554443 3467889999999999999999999987654 7999999999998888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh--hhcCCCCCCHHHHHHHHHHhhccC
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++++++.++.++.+. ++++.++||.+.|++.......         .....  ..+..+..+++|+|+.+.+++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~  231 (249)
T PRK12825        161 AGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEE---------AREAKDAETPLGRSGTPEDIARAVAFLCSDA  231 (249)
T ss_pred             HHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccch---------hHHhhhccCCCCCCcCHHHHHHHHHHHhCcc
Confidence            99999999999998776 9999999999999986543211         11111  123333557999999999999988


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      +++++|+.+
T Consensus       232 ~~~~~g~~~  240 (249)
T PRK12825        232 SDYITGQVI  240 (249)
T ss_pred             ccCcCCCEE
Confidence            888888764

>PRK08324 short chain dehydrogenase; Validated

Probab=100.00  E-value=4.6e-31  Score=256.21  Aligned_cols=243  Identities=27%  Similarity=0.313  Sum_probs=199.8

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ....++||+++||||+||||+++++.|+++|++|++++|+.+.+++..+++...  .++..+.+|++|.++++++++++.
T Consensus       416 ~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        416 KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            444568999999999999999999999999999999999998887777666443  358899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +.+|++|++|||+|.....+..+. +.+.|++.+++|+.+++.+++.+.+.|++++  |++|++||..+..+.++...|+
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~  572 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEET-SDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYG  572 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHH
Confidence            999999999999998876665554 4588999999999999999999999997753  7999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcc--cCCCcCCcccCcCC-Cccc-hHH---HHhhhhcCCCCCCHHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLI--ESEITGGKFLNKNG-KLEV-DQE---IRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v--~t~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~p~evA~~  270 (287)
                      ++|++++++++.++.++++. |+||+|+||.+  +|++....+..... .... .++   .+.......+...|+|+|++
T Consensus       573 asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a  652 (681)
T PRK08324        573 AAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEA  652 (681)
T ss_pred             HHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHH
Confidence            99999999999999999887 99999999999  88875432211100 0001 111   22222223334579999999


Q ss_pred             HHHhhccCCccccCCC
Q 042560          271 IVNSACRGDRYLTQPS  286 (287)
Q Consensus       271 i~~l~~~~~~~itG~~  286 (287)
                      +++++++..+++||+.
T Consensus       653 ~~~l~s~~~~~~tG~~  668 (681)
T PRK08324        653 VVFLASGLLSKTTGAI  668 (681)
T ss_pred             HHHHhCccccCCcCCE
Confidence            9999988778888875

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.8e-31  Score=230.35  Aligned_cols=228  Identities=25%  Similarity=0.280  Sum_probs=187.0

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-MGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ....++++++++||||++|||+++|++|+++|++|++.+|+.++.++..+.+.. ....++.++++|++|.+++.++.++
T Consensus        28 ~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~  107 (314)
T KOG1208|consen   28 THGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEE  107 (314)
T ss_pred             eccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999888876 4456789999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC-------
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP-------  190 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~-------  190 (287)
                      ..+.++++|++|||||+.....  . .+.|.++..+.+|+.|++.+++.++|.|++.. +|||++||..+...       
T Consensus       108 ~~~~~~~ldvLInNAGV~~~~~--~-~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~  184 (314)
T KOG1208|consen  108 FKKKEGPLDVLINNAGVMAPPF--S-LTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLS  184 (314)
T ss_pred             HHhcCCCccEEEeCcccccCCc--c-cCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhcc
Confidence            9999999999999999987654  2 23478999999999999999999999998765 89999999876110       


Q ss_pred             ------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCH
Q 042560          191 ------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT  264 (287)
Q Consensus       191 ------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  264 (287)
                            .....+|+.||-+...+++.|++++.++|.+++++||.+.|+...+.       .+...-+.... .....++|
T Consensus       185 ~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r~-------~~~~~~l~~~l-~~~~~ks~  256 (314)
T KOG1208|consen  185 GEKAKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSRV-------NLLLRLLAKKL-SWPLTKSP  256 (314)
T ss_pred             chhccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceecc-------hHHHHHHHHHH-HHHhccCH
Confidence                  22334599999999999999999998779999999999999944331       01111122222 22223578


Q ss_pred             HHHHHHHHHhhccC
Q 042560          265 EECAKAIVNSACRG  278 (287)
Q Consensus       265 ~evA~~i~~l~~~~  278 (287)
                      ++-|++.++.+.++
T Consensus       257 ~~ga~t~~~~a~~p  270 (314)
T KOG1208|consen  257 EQGAATTCYAALSP  270 (314)
T ss_pred             HHHhhheehhccCc
Confidence            88888888887754

>PRK07041 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-31  Score=225.86  Aligned_cols=217  Identities=24%  Similarity=0.308  Sum_probs=175.0

Q ss_pred             EEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEEE
Q 042560           51 LITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLV  130 (287)
Q Consensus        51 lVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli  130 (287)
                      +||||++|||++++++|+++|++|++++|+.+..++..+.++.  +.++.++.+|++|++++++++++    .+++|++|
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~li   74 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG--GAPVRTAALDITDEAAVDAFFAE----AGPFDHVV   74 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHh----cCCCCEEE
Confidence            5999999999999999999999999999998877766665542  34588899999999999888775    47899999


Q ss_pred             EccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHH
Q 042560          131 TNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET  210 (287)
Q Consensus       131 ~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~  210 (287)
                      ||+|.....++.+. +.+++++.+++|+.+++.+.+  .+.+. +.|+||++||..+..+.+....|+++|++++++++.
T Consensus        75 ~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~--~~~~~-~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~  150 (230)
T PRK07041         75 ITAADTPGGPVRAL-PLAAAQAAMDSKFWGAYRVAR--AARIA-PGGSLTFVSGFAAVRPSASGVLQGAINAALEALARG  150 (230)
T ss_pred             ECCCCCCCCChhhC-CHHHHHHHHHHHHHHHHHHHh--hhhhc-CCeEEEEECchhhcCCCCcchHHHHHHHHHHHHHHH
Confidence            99998766554443 447889999999999999999  44554 358999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          211 LRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       211 la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      ++.|+.+ +||++++||+++|++........      .....+   ...+..++.+|+|+|+++++++++  .+++|+.
T Consensus       151 la~e~~~-irv~~i~pg~~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~  220 (230)
T PRK07041        151 LALELAP-VRVNTVSPGLVDTPLWSKLAGDA------REAMFAAAAERLPARRVGQPEDVANAILFLAAN--GFTTGST  220 (230)
T ss_pred             HHHHhhC-ceEEEEeecccccHHHHhhhccc------hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcC--CCcCCcE
Confidence            9999976 99999999999999864321110      011111   112333456799999999999975  5888875

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.98  E-value=5.5e-31  Score=213.76  Aligned_cols=232  Identities=21%  Similarity=0.225  Sum_probs=199.4

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..|+||+++|+|-.  ..|++.||+.|.++|+++.++..++ ++++..+++....+ ....++||+++.++++++++++.
T Consensus         2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~-s~~v~~cDV~~d~~i~~~f~~i~   79 (259)
T COG0623           2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELG-SDLVLPCDVTNDESIDALFATIK   79 (259)
T ss_pred             CccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhcc-CCeEEecCCCCHHHHHHHHHHHH
Confidence            35799999999976  6999999999999999999999887 55555555544332 26778999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +++|++|.+||+.|+.+.    +++.+ .+.|.+...+++..++...+++++.|.|.+ +|++|-++=..+.+..|++..
T Consensus        80 ~~~g~lD~lVHsIaFa~k~el~G~~~d-tsre~f~~a~~IS~YS~~~lak~a~~lM~~-ggSiltLtYlgs~r~vPnYNv  157 (259)
T COG0623          80 KKWGKLDGLVHSIAFAPKEELKGDYLD-TSREGFLIAMDISAYSFTALAKAARPLMNN-GGSILTLTYLGSERVVPNYNV  157 (259)
T ss_pred             HhhCcccEEEEEeccCChHHhCCcccc-cCHHHHHhHhhhhHhhHHHHHHHHHHhcCC-CCcEEEEEeccceeecCCCch
Confidence            999999999999999873    44555 455889999999999999999999999986 889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC---CHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~evA~~i~  272 (287)
                      .+.+||+|++-+|.||.+++++ ||||+|.-||++|--....        .....+.+......|++   ++|||+++.+
T Consensus       158 MGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI--------~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~  229 (259)
T COG0623         158 MGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGI--------GDFRKMLKENEANAPLRRNVTIEEVGNTAA  229 (259)
T ss_pred             hHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhcc--------ccHHHHHHHHHhhCCccCCCCHHHhhhhHH
Confidence            9999999999999999999998 9999999999999654432        22345555555666666   6999999999


Q ss_pred             HhhccCCccccCCC
Q 042560          273 NSACRGDRYLTQPS  286 (287)
Q Consensus       273 ~l~~~~~~~itG~~  286 (287)
                      ||+|+-++-+||+.
T Consensus       230 fLlSdLssgiTGei  243 (259)
T COG0623         230 FLLSDLSSGITGEI  243 (259)
T ss_pred             HHhcchhcccccce
Confidence            99999999999985

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.98  E-value=2.2e-31  Score=221.27  Aligned_cols=194  Identities=18%  Similarity=0.251  Sum_probs=163.2

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||++|||++++++|+++ ++|++++|+..                  .+++|++|++++++++++    .+++|+
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~------------------~~~~D~~~~~~~~~~~~~----~~~id~   58 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG------------------DVQVDITDPASIRALFEK----VGKVDA   58 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC------------------ceEecCCChHHHHHHHHh----cCCCCE
Confidence            6999999999999999999999 99999999753                  267999999999988765    478999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY  208 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~  208 (287)
                      +|||+|.....+..+. +.++|++.+++|+.+++.+.+.+.|.|.+ +|+++++||..+..+.+++..|+++|+++++|+
T Consensus        59 lv~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~  136 (199)
T PRK07578         59 VVSAAGKVHFAPLAEM-TDEDFNVGLQSKLMGQVNLVLIGQHYLND-GGSFTLTSGILSDEPIPGGASAATVNGALEGFV  136 (199)
T ss_pred             EEECCCCCCCCchhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEcccccCCCCCCchHHHHHHHHHHHHH
Confidence            9999998765554443 44789999999999999999999999975 589999999999999999999999999999999


Q ss_pred             HHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          209 ETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       209 ~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +.++.|+ +. |+||+|+||+++|++....                ...+.....+|||+|+.+.++++.   +.+|+.|
T Consensus       137 ~~la~e~-~~gi~v~~i~Pg~v~t~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~---~~~g~~~  196 (199)
T PRK07578        137 KAAALEL-PRGIRINVVSPTVLTESLEKYG----------------PFFPGFEPVPAARVALAYVRSVEG---AQTGEVY  196 (199)
T ss_pred             HHHHHHc-cCCeEEEEEcCCcccCchhhhh----------------hcCCCCCCCCHHHHHHHHHHHhcc---ceeeEEe
Confidence            9999999 66 9999999999999864210                001222345799999999999864   5777654

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.98  E-value=2.4e-30  Score=225.59  Aligned_cols=227  Identities=25%  Similarity=0.297  Sum_probs=182.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .|+++||||+||||++++++|+++|++|++++|+.+.+++..+..    ..++.++++|++|.++++++++++.+.++++
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY----GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999999987766554432    2358889999999999999999999988999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|.....+..+. +.+++++.+++|+.+++.+++.++|.|++++ +++|++||..+..+.|+...|+++|++++
T Consensus        78 d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  156 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEEL-SDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIE  156 (276)
T ss_pred             CEEEECCCCCCCcccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCCCchhHHHHHHHH
Confidence            999999998876654443 3467889999999999999999999987654 89999999999888899999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccc---hHHHHhhhhcC--CCCCCHHHHHHHHHHhhccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEV---DQEIRDVQISL--LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++.++.++++. ++++.++||.+.|++..............   ...+.+.....  ...++|++++++++..+..+
T Consensus       157 ~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~  235 (276)
T PRK06482        157 GFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQT  235 (276)
T ss_pred             HHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCC
Confidence            9999999999876 99999999999999865432221111110   11122222111  12357999999999998643

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.98  E-value=1.2e-30  Score=224.43  Aligned_cols=238  Identities=25%  Similarity=0.322  Sum_probs=190.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||+++||++++++|+++|++|++++|+.+..++..+++...+ .++..+.+|++|.++++++++++.+..+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999999999999999999888777777665543 368899999999999999999999988999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||+|........+. +.+++++++..|+.+++.+++.+++.|++.+ +++|++||..+..+.+.+..|+++|++++
T Consensus        80 d~vi~~a~~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~  158 (255)
T TIGR01963        80 DILVNNAGIQHVAPIEEF-PPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLI  158 (255)
T ss_pred             CEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCCchhHHHHHHHH
Confidence            999999998765444333 3467788999999999999999999987655 79999999988888889999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCcc-chHHH----HhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLE-VDQEI----RDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++++.++.++.+. ++++.++||.+.|++....+........ .....    ........++.+++|+|+++++++++..
T Consensus       159 ~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~  238 (255)
T TIGR01963       159 GLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAA  238 (255)
T ss_pred             HHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccc
Confidence            9999999998776 9999999999999975433211110000 01111    1111223345679999999999998765


Q ss_pred             ccccCCC
Q 042560          280 RYLTQPS  286 (287)
Q Consensus       280 ~~itG~~  286 (287)
                      +.++|+.
T Consensus       239 ~~~~g~~  245 (255)
T TIGR01963       239 AGITGQA  245 (255)
T ss_pred             cCccceE
Confidence            5666653

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.98  E-value=2.4e-30  Score=220.54  Aligned_cols=225  Identities=21%  Similarity=0.276  Sum_probs=185.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||.++++.|+++|++|++++|+.++.++..+.....+  ++..+++|+++.++++++++++.+.
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~   78 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKAAKV   78 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999888776655554332  5788999999999999999999888


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-CCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-PPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-~~~~~~~Y~asK  201 (287)
                      ++++|.+|+|+|........+   .+.++++++.|+.+++.+.+.++|.+++ +|++|++||..+.. +.+....|+++|
T Consensus        79 ~~~id~ii~~ag~~~~~~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~~~~~~~Y~~sK  154 (238)
T PRK05786         79 LNAIDGLVVTVGGYVEDTVEE---FSGLEEMLTNHIKIPLYAVNASLRFLKE-GSSIVLVSSMSGIYKASPDQLSYAVAK  154 (238)
T ss_pred             hCCCCEEEEcCCCcCCCchHH---HHHHHHHHHHhchHHHHHHHHHHHHHhc-CCEEEEEecchhcccCCCCchHHHHHH
Confidence            899999999999754433222   2678889999999999999999999865 58999999987743 567788899999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-CCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-LLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++++.+++.++.++.+. +++++|+||+++|++...            .. .+.... ..+..+|+|+|+.+.+++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~------------~~-~~~~~~~~~~~~~~~~va~~~~~~~~~~~  221 (238)
T PRK05786        155 AGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE------------RN-WKKLRKLGDDMAPPEDFAKVIIWLLTDEA  221 (238)
T ss_pred             HHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch------------hh-hhhhccccCCCCCHHHHHHHHHHHhcccc
Confidence            99999999999999876 999999999999986421            00 011111 1234579999999999999888


Q ss_pred             ccccCCC
Q 042560          280 RYLTQPS  286 (287)
Q Consensus       280 ~~itG~~  286 (287)
                      .+++|+.
T Consensus       222 ~~~~g~~  228 (238)
T PRK05786        222 DWVDGVV  228 (238)
T ss_pred             cCccCCE
Confidence            8888864

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.98  E-value=3.1e-30  Score=219.64  Aligned_cols=224  Identities=28%  Similarity=0.328  Sum_probs=188.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |.+++++++||||+|+||++++++|+++|++|++++|++++.++..+.+...  .++..+.+|++|.+++.++++++.+.
T Consensus         2 ~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (237)
T PRK07326          2 MSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAA   79 (237)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999988877777766543  35888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||+|......+.+ .+.+++++.+++|+.+++.+++++++.+++..|++|++||..+..+.++...|+++|+
T Consensus        80 ~~~~d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~  158 (237)
T PRK07326         80 FGGLDVLIANAGVGHFAPVEE-LTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKF  158 (237)
T ss_pred             cCCCCEEEECCCCCCCCchhh-CCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCCCchHHHHHH
Confidence            999999999999876554444 3446788999999999999999999998655689999999999888888999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.++.+. +++++|.||++.|++......         ++       .....+|+|+|+.++++++.+.+.
T Consensus       159 a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~---------~~-------~~~~~~~~d~a~~~~~~l~~~~~~  222 (237)
T PRK07326        159 GLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS---------EK-------DAWKIQPEDIAQLVLDLLKMPPRT  222 (237)
T ss_pred             HHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc---------hh-------hhccCCHHHHHHHHHHHHhCCccc
Confidence            9999999999999876 999999999999986543110         00       011246999999999999987665


Q ss_pred             ccCC
Q 042560          282 LTQP  285 (287)
Q Consensus       282 itG~  285 (287)
                      +.+.
T Consensus       223 ~~~~  226 (237)
T PRK07326        223 LPSK  226 (237)
T ss_pred             cccc
Confidence            5543

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1.1e-30  Score=223.60  Aligned_cols=222  Identities=18%  Similarity=0.147  Sum_probs=171.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH-HHHhc---C
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV-TMEHF---G  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~-~~~~~---~  124 (287)
                      +++||||+||||++++++|+++|++|++++|+..+.  .   .. ..+.++.++++|++|.+++++++++ +.+.+   +
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~---~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~   76 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L---AA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA   76 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h---hh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence            699999999999999999999999999999986541  1   11 1234688999999999999998876 55444   4


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||+|...........+.+.+++.+++|+.+++.+++.+.+.|.+++ |+||++||..+..+.+++..|+++|++
T Consensus        77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a  156 (243)
T PRK07023         77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATKAA  156 (243)
T ss_pred             CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCchHHHHHHHH
Confidence            7999999999875433233335578899999999999999999999987654 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH-HHHhhccC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA-IVNSACRG  278 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~-i~~l~~~~  278 (287)
                      ++++++.++.+ .+. |++++|+||+++|++......... ......+......+..++.+|+|+|+. +.+++++.
T Consensus       157 ~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~~~  231 (243)
T PRK07023        157 LDHHARAVALD-ANRALRIVSLAPGVVDTGMQATIRATDE-ERFPMRERFRELKASGALSTPEDAARRLIAYLLSDD  231 (243)
T ss_pred             HHHHHHHHHhc-CCCCcEEEEecCCccccHHHHHHHhccc-ccchHHHHHHHhhhcCCCCCHHHHHHHHHHHHhccc
Confidence            99999999999 655 999999999999998643211110 001111112223344567789999995 55666554

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.98  E-value=1.1e-30  Score=211.74  Aligned_cols=216  Identities=25%  Similarity=0.278  Sum_probs=168.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEE-EeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVL-VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH-  122 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-  122 (287)
                      .-|.++||||++|||..++++|.+. |-++++ ..|++++..+..+ .......+++.++.|+++.++++.+++++.+- 
T Consensus         2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~-~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iV   80 (249)
T KOG1611|consen    2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELA-LKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIV   80 (249)
T ss_pred             CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHH-HhhccCCceEEEEEecccHHHHHHHHHHHHhhc
Confidence            3455999999999999999999976 556555 4555776422222 22223458999999999999999999999997 


Q ss_pred             -cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC------------CEEEEEcCCCCCC
Q 042560          123 -FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK------------GKIIVVASAAGWL  189 (287)
Q Consensus       123 -~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~------------g~iv~isS~~~~~  189 (287)
                       ..++|++|||||+...-.....++.+.|.+.+++|..+++.+.|+++|++++..            +.|||+||.++-.
T Consensus        81 g~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~  160 (249)
T KOG1611|consen   81 GSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSI  160 (249)
T ss_pred             ccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccccc
Confidence             458999999999986654444455567899999999999999999999997643            3689999887764


Q ss_pred             C---CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHH
Q 042560          190 P---PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTE  265 (287)
Q Consensus       190 ~---~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  265 (287)
                      +   ..++.+|.+||+|+++|+|+++.|++++ |-|..+|||+|+|+|..+-                      ..-+||
T Consensus       161 ~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~----------------------a~ltve  218 (249)
T KOG1611|consen  161 GGFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKK----------------------AALTVE  218 (249)
T ss_pred             CCCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCC----------------------cccchh
Confidence            3   2357899999999999999999999988 9999999999999997521                      123577


Q ss_pred             HHHHHHHHhhccCCccccC
Q 042560          266 ECAKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       266 evA~~i~~l~~~~~~~itG  284 (287)
                      |-+..++.-...-..-=+|
T Consensus       219 eSts~l~~~i~kL~~~hnG  237 (249)
T KOG1611|consen  219 ESTSKLLASINKLKNEHNG  237 (249)
T ss_pred             hhHHHHHHHHHhcCcccCc
Confidence            7777777766654443333

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.97  E-value=2.2e-30  Score=230.83  Aligned_cols=237  Identities=18%  Similarity=0.157  Sum_probs=177.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++... ..++.++.+|++|.++++++++++.+.
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          2 SQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP-PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc-CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            4557899999999999999999999999999999999998888777776432 346888999999999999999998887


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC---CEEEEEcCCCCCC----------
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWL----------  189 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~---g~iv~isS~~~~~----------  189 (287)
                      .+++|++|||||+..........+.+.++..+++|+.+++.+++.++|.|++++   ++||++||.....          
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~  160 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIP  160 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCC
Confidence            788999999999864321111224477899999999999999999999997654   5999999965421          


Q ss_pred             -------------------------CCCCChhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcc-cCCCcCCcccCc
Q 042560          190 -------------------------PPPRMSFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLI-ESEITGGKFLNK  241 (287)
Q Consensus       190 -------------------------~~~~~~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v-~t~~~~~~~~~~  241 (287)
                                               +..+...|+.||.+...+++.+++++.. . |+|++++||.| .|++.+..... 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~-  239 (322)
T PRK07453        161 APADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPL-  239 (322)
T ss_pred             CccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcccccCCHH-
Confidence                                     1123467999999999999999999953 4 99999999999 58876532110 


Q ss_pred             CCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCC
Q 042560          242 NGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQP  285 (287)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~  285 (287)
                         .........+.. .....++++.|+.+++++.++.--.+|.
T Consensus       240 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~  279 (322)
T PRK07453        240 ---FQKLFPWFQKNI-TGGYVSQELAGERVAQVVADPEFAQSGV  279 (322)
T ss_pred             ---HHHHHHHHHHHH-hhceecHHHHhhHHHHhhcCcccCCCCc
Confidence               000000011111 1113468888888888876553334554

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=1.8e-31  Score=214.01  Aligned_cols=184  Identities=33%  Similarity=0.322  Sum_probs=167.7

Q ss_pred             CCCEEEEecCC-ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH-hc
Q 042560           46 AGKVVLITGAS-SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME-HF  123 (287)
Q Consensus        46 ~~k~alVtGa~-~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~  123 (287)
                      ..|.++|||++ ||||.+++++|++.|+.|+.++|+.+....+....      .+.....|+++++++.++..++++ ..
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~------gl~~~kLDV~~~~~V~~v~~evr~~~~   79 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF------GLKPYKLDVSKPEEVVTVSGEVRANPD   79 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh------CCeeEEeccCChHHHHHHHHHHhhCCC
Confidence            46788888877 79999999999999999999999999877766543      378899999999999999999999 67


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      |++|+++||||..-..+..+. +.++.++.+++|++|.+.+++++...+.+.+|.|||++|..+..|.|-.+.|++||||
T Consensus        80 Gkld~L~NNAG~~C~~Pa~d~-~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~iYsAsKAA  158 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCTFPALDA-TIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGSIYSASKAA  158 (289)
T ss_pred             CceEEEEcCCCCCcccccccC-CHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhhhhhHHHHH
Confidence            999999999998766665554 5588999999999999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGG  236 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~  236 (287)
                      +.++++.|+-|+++. |+|..+.||.+.|++..+
T Consensus       159 ihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k  192 (289)
T KOG1209|consen  159 IHAYARTLRLELKPFGVRVINAITGGVATDIADK  192 (289)
T ss_pred             HHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence            999999999999999 999999999999999876

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.1e-30  Score=221.50  Aligned_cols=208  Identities=27%  Similarity=0.334  Sum_probs=171.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||++|||++++++|+++|++|++++|+.+.+++..+.    . .++.++.+|++|.++++++++++..   .+|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~---~~d   73 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDHPGTKAALSQLPF---IPE   73 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCHHHHHHHHHhccc---CCC
Confidence            6899999999999999999999999999999998776655432    1 3578899999999999999887643   479


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      ++|||+|.....+... .+.+++++.+++|+.+++.+++.++|.|.+ ++++|++||..+..+.++...|+++|++++++
T Consensus        74 ~~i~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  151 (240)
T PRK06101         74 LWIFNAGDCEYMDDGK-VDATLMARVFNVNVLGVANCIEGIQPHLSC-GHRVVIVGSIASELALPRAEAYGASKAAVAYF  151 (240)
T ss_pred             EEEEcCcccccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCeEEEEechhhccCCCCCchhhHHHHHHHHH
Confidence            9999999754332222 244678899999999999999999999864 57899999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++.++.|+++. ++++++.||+++|++......                 ......+|+|+|+.++..+..+...+
T Consensus       152 ~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~-----------------~~~~~~~~~~~a~~i~~~i~~~~~~~  210 (240)
T PRK06101        152 ARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF-----------------AMPMIITVEQASQEIRAQLARGKSHI  210 (240)
T ss_pred             HHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC-----------------CCCcccCHHHHHHHHHHHHhcCCCEE
Confidence            99999999877 999999999999998653100                 01113579999999999887764433

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.97  E-value=7.6e-30  Score=217.22  Aligned_cols=228  Identities=29%  Similarity=0.379  Sum_probs=185.7

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++|||++++||.+++++|+++|++|++++|+. +..++..+.++..+ .++..+.+|++|+++++++++.+.++++++|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYG-VKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            58999999999999999999999999999875 45555555555444 35889999999999999999999999999999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      +|||+|........+. +.+.+++.++.|+.+.+.+.+.+.+.+.+. .++++++||..+.++.++...|+++|++++.+
T Consensus        80 vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~~~~y~~~k~a~~~~  158 (239)
T TIGR01830        80 LVNNAGITRDNLLMRM-KEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAGQANYAASKAGVIGF  158 (239)
T ss_pred             EEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCCchhHHHHHHHHHH
Confidence            9999998755443333 346788999999999999999999988654 47999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      ++.++.++... ++++.+.||+++|++.....       ...........+....++++|+|+.+++++.+.+.+++|+.
T Consensus       159 ~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~  231 (239)
T TIGR01830       159 TKSLAKELASRNITVNAVAPGFIDTDMTDKLS-------EKVKKKILSQIPLGRFGTPEEVANAVAFLASDEASYITGQV  231 (239)
T ss_pred             HHHHHHHHhhcCeEEEEEEECCCCChhhhhcC-------hHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCcccCCcCCCE
Confidence            99999998766 99999999999998754311       00111111222334466899999999999988878888875

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=1e-29  Score=215.81  Aligned_cols=223  Identities=30%  Similarity=0.306  Sum_probs=194.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCC-eeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP-FALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +.++|||+++|||+++|+++.++|++|.++.|+..++.++.++++..... .+.+..+|++|-+++...++++++..+.+
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            88999999999999999999999999999999999999999888664322 37789999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      |.+|+|||...++.+.+. +.+.++..+++|+.+.++.+++.++.|++..  |+|+.+||..+..+..++++|+++|+|+
T Consensus       114 d~l~~cAG~~v~g~f~~~-s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~al  192 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDL-SPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFAL  192 (331)
T ss_pred             ceEEEecCcccccccccC-CHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHH
Confidence            999999999999888875 5589999999999999999999999998765  7999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      .+|+..++.|+.++ |+|..+.|+.++||-.+.....+       ++..+.+.......++||+|.+++.-+..+
T Consensus       193 rgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tk-------P~~t~ii~g~ss~~~~e~~a~~~~~~~~rg  260 (331)
T KOG1210|consen  193 RGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTK-------PEETKIIEGGSSVIKCEEMAKAIVKGMKRG  260 (331)
T ss_pred             HHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccC-------chheeeecCCCCCcCHHHHHHHHHhHHhhc
Confidence            99999999999887 99999999999999665433222       222233333444467999999999877554

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.97  E-value=3.6e-30  Score=207.73  Aligned_cols=163  Identities=35%  Similarity=0.484  Sum_probs=149.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC--hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-RLVLVARR--ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |+++||||++|||++++++|+++|+ +|++++|+  .+..+++.++++..+ .++.++++|++++++++++++++.++++
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            6899999999999999999999966 78889999  677788878887655 6899999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ++|++|||+|........+. +.+++++++++|+.+++.+.+.++|   +.+|+||++||..+..|.|+++.|+++|+|+
T Consensus        80 ~ld~li~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~---~~~g~iv~~sS~~~~~~~~~~~~Y~askaal  155 (167)
T PF00106_consen   80 PLDILINNAGIFSDGSLDDL-SEEELERVFRVNLFGPFLLAKALLP---QGGGKIVNISSIAGVRGSPGMSAYSASKAAL  155 (167)
T ss_dssp             SESEEEEECSCTTSBSGGGS-HHHHHHHHHHHHTHHHHHHHHHHHH---HTTEEEEEEEEGGGTSSSTTBHHHHHHHHHH
T ss_pred             cccccccccccccccccccc-cchhhhhccccccceeeeeeehhee---ccccceEEecchhhccCCCCChhHHHHHHHH
Confidence            99999999999986666554 4488999999999999999999999   4579999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 042560          205 IALYETLRVEF  215 (287)
Q Consensus       205 ~~~~~~la~e~  215 (287)
                      ++|+++++.|+
T Consensus       156 ~~~~~~la~e~  166 (167)
T PF00106_consen  156 RGLTQSLAAEL  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08264 short chain dehydrogenase; Validated

Probab=99.97  E-value=4.1e-29  Score=213.00  Aligned_cols=210  Identities=27%  Similarity=0.413  Sum_probs=174.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++++++||||+|+||+++|++|+++|+ +|++++|+.++.++        .+.++.++.+|++|.++++++++.   
T Consensus         2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~---   70 (238)
T PRK08264          2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--------LGPRVVPLQLDVTDPASVAAAAEA---   70 (238)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh--------cCCceEEEEecCCCHHHHHHHHHh---
Confidence            567899999999999999999999999999 99999998876544        223688999999999998887764   


Q ss_pred             hcCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                       .+++|++|||+|.. ......+ .+.+.+.+.+++|+.+++.+.+.+.|.+++. .+++|++||..+..+.++...|++
T Consensus        71 -~~~id~vi~~ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~  148 (238)
T PRK08264         71 -ASDVTILVNNAGIFRTGSLLLE-GDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSA  148 (238)
T ss_pred             -cCCCCEEEECCCcCCCCCcccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCchHhHH
Confidence             46899999999984 3333333 3457888999999999999999999998765 489999999999999899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|++++++++.++.++.+. ++++.+.||.++|++.....                    .+..+|+++|+.++..+...
T Consensus       149 sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~~--------------------~~~~~~~~~a~~~~~~~~~~  208 (238)
T PRK08264        149 SKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGLD--------------------APKASPADVARQILDALEAG  208 (238)
T ss_pred             HHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccCC--------------------cCCCCHHHHHHHHHHHHhCC
Confidence            9999999999999999876 99999999999999854311                    11345788888888777766


Q ss_pred             CccccCC
Q 042560          279 DRYLTQP  285 (287)
Q Consensus       279 ~~~itG~  285 (287)
                      ...+++.
T Consensus       209 ~~~i~~~  215 (238)
T PRK08264        209 DEEVLPD  215 (238)
T ss_pred             CCeEecc
Confidence            5555543

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=4.3e-31  Score=214.17  Aligned_cols=237  Identities=19%  Similarity=0.192  Sum_probs=186.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .++++++||+|.|||...+..+.+.+-.....+++....+  .+.++...++.......|.+...-..++.+..+++.+.
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk   82 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGK   82 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence            4788999999999999999988887765444444333222  11121112244566678888888899999999999999


Q ss_pred             ccEEEEccccCCCCC--CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          126 LDHLVTNAGVVPMCL--FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       126 idvli~nag~~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      .|++|||||...+-.  ..+..+.++|++.++.|+++++.+.+.++|.++++  +|.+||+||.+...|++++++||++|
T Consensus        83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa~yc~~K  162 (253)
T KOG1204|consen   83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSK  162 (253)
T ss_pred             eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHHHhhhhH
Confidence            999999999886533  22355668899999999999999999999999988  49999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ||.++|.+.+|.|-..+++|.+++||++||+|........ .-.+..-.+.+.......+.+|...|+.+.+|+.... +
T Consensus       163 aAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~-~~~p~~l~~f~el~~~~~ll~~~~~a~~l~~L~e~~~-f  240 (253)
T KOG1204|consen  163 AARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETS-RMTPADLKMFKELKESGQLLDPQVTAKVLAKLLEKGD-F  240 (253)
T ss_pred             HHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhcc-CCCHHHHHHHHHHHhcCCcCChhhHHHHHHHHHHhcC-c
Confidence            9999999999999763399999999999999986543222 1112223455556667778899999999999997754 8


Q ss_pred             ccCCC
Q 042560          282 LTQPS  286 (287)
Q Consensus       282 itG~~  286 (287)
                      ++|++
T Consensus       241 ~sG~~  245 (253)
T KOG1204|consen  241 VSGQH  245 (253)
T ss_pred             ccccc
Confidence            99986

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.97  E-value=9.6e-29  Score=213.01  Aligned_cols=224  Identities=21%  Similarity=0.222  Sum_probs=174.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||+||||+++++.|+++|++|++++|+....++..+.....+ .++.++.+|++|.+++.++++      +++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~------~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG-LALRVEKLDLTDAIDRAQAAE------WDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeeCCCHHHHHHHhc------CCC
Confidence            6789999999999999999999999999999999887776666555443 358889999999998877653      489


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++|||||.....+..+ .+.+.+++.+++|+.+++.+.+.+++.+.+.+ |+||++||..+..+.++...|+++|++++
T Consensus        75 d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~  153 (257)
T PRK09291         75 DVLLNNAGIGEAGAVVD-IPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALE  153 (257)
T ss_pred             CEEEECCCcCCCcCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCCcchhHHHHHHHH
Confidence            99999999876655444 34577889999999999999999999887654 89999999999888888999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC--CCCCHHHHHHHHHHhhccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL--PVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++.++.++.+. |++++|+||++.|++..........................  ...+|+|+++.++.++.++
T Consensus       154 ~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  229 (257)
T PRK09291        154 AIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPAD  229 (257)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCC
Confidence            9999999998776 99999999999998765322111000000111111111111  2247999999999887643

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.2e-28  Score=208.64  Aligned_cols=180  Identities=19%  Similarity=0.247  Sum_probs=151.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.++.++..+    .  .++.+..+|++|+++++++++++.+  +++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~--~~~~~~~~D~~d~~~~~~~~~~~~~--~~id   73 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----L--PGVHIEKLDMNDPASLDQLLQRLQG--QRFD   73 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----c--cccceEEcCCCCHHHHHHHHHHhhc--CCCC
Confidence            689999999999999999999999999999999876554322    1  1467788999999999999988754  4899


Q ss_pred             EEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---CCCChhhhhhHHH
Q 042560          128 HLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---PPRMSFYNASKAA  203 (287)
Q Consensus       128 vli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---~~~~~~Y~asKaa  203 (287)
                      ++|||+|..... ......+.+++++.+++|+.+++.+.+.++|.+++..++++++||..+..+   ..++..|+++|++
T Consensus        74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~a  153 (225)
T PRK08177         74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKAA  153 (225)
T ss_pred             EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCCCCCccchHHHHHH
Confidence            999999986432 112223446788999999999999999999999865589999999877543   3356789999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITG  235 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~  235 (287)
                      ++++++.++.++++. |+||+|+||+++|++..
T Consensus       154 ~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~  186 (225)
T PRK08177        154 LNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGG  186 (225)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEcCCceecCCCC
Confidence            999999999999877 99999999999999864

>PRK08017 oxidoreductase; Provisional

Probab=99.96  E-value=3e-28  Score=209.83  Aligned_cols=224  Identities=25%  Similarity=0.303  Sum_probs=179.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-CC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-GR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~~  125 (287)
                      .|+++||||+||||+++++.|+++|++|++++|+.++++...+    .   .+..+.+|++|.+++..+++.+.... ++
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~----~---~~~~~~~D~~~~~~~~~~~~~i~~~~~~~   74 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS----L---GFTGILLDLDDPESVERAADEVIALTDNR   74 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh----C---CCeEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3689999999999999999999999999999999877654322    1   26778999999999999998887754 68


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|.+|||+|.....+..+ .+.+++++.++.|+.+++.+.+.+++.+++.+ +++|++||..+..+.++...|+++|+++
T Consensus        75 ~~~ii~~ag~~~~~~~~~-~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~  153 (256)
T PRK08017         75 LYGLFNNAGFGVYGPLST-ISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYAL  153 (256)
T ss_pred             CeEEEECCCCCCccchhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCCccHHHHHHHHH
Confidence            999999999876544443 34477889999999999999999999987654 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      +.+++.++.++.+. ++++.+.||+++|++.......+.......+.     .......+|||+|+.+..+++++...++
T Consensus       154 ~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~~~~~~~~~~~~~~~  228 (256)
T PRK08017        154 EAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPG-----IAARFTLGPEAVVPKLRHALESPKPKLR  228 (256)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEeCCCcccchhhcccchhhccchhhhH-----HHhhcCCCHHHHHHHHHHHHhCCCCCce
Confidence            99999999998877 99999999999998765432211111110111     1112245799999999999988765554

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.96  E-value=9.3e-29  Score=211.90  Aligned_cols=202  Identities=22%  Similarity=0.185  Sum_probs=153.1

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .|++...+++|+++||||++|||++++++|+++|++|++++|+.....+.   .. ..  ....+.+|++|.+++++   
T Consensus         5 ~~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~---~~-~~--~~~~~~~D~~~~~~~~~---   75 (245)
T PRK12367          5 DPMAQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSES---ND-ES--PNEWIKWECGKEESLDK---   75 (245)
T ss_pred             chhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhh---hc-cC--CCeEEEeeCCCHHHHHH---
Confidence            35667788999999999999999999999999999999999986321111   11 11  13567899999987754   


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCC
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPR  193 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~  193 (287)
                          .++++|++|||||.....   + .+.+++++.+++|+.+++.+++.++|.|.++    ++.+++.+|..+..+ ++
T Consensus        76 ----~~~~iDilVnnAG~~~~~---~-~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~-~~  146 (245)
T PRK12367         76 ----QLASLDVLILNHGINPGG---R-QDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP-AL  146 (245)
T ss_pred             ----hcCCCCEEEECCccCCcC---C-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC-CC
Confidence                346899999999975432   2 2447899999999999999999999999652    234545566666544 46


Q ss_pred             ChhhhhhHHHHHHHH---HHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          194 MSFYNASKAAKIALY---ETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       194 ~~~Y~asKaal~~~~---~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      .+.|++||+|+..+.   +.++.|+.+. ++|+.+.||+++|++..                       ..+.+|||+|+
T Consensus       147 ~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~-----------------------~~~~~~~~vA~  203 (245)
T PRK12367        147 SPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELNP-----------------------IGIMSADFVAK  203 (245)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccCc-----------------------cCCCCHHHHHH
Confidence            778999999986544   4444455565 99999999999998621                       01357999999


Q ss_pred             HHHHhhccCCc
Q 042560          270 AIVNSACRGDR  280 (287)
Q Consensus       270 ~i~~l~~~~~~  280 (287)
                      .++++++.+..
T Consensus       204 ~i~~~~~~~~~  214 (245)
T PRK12367        204 QILDQANLGLY  214 (245)
T ss_pred             HHHHHHhcCCc
Confidence            99999987655

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.96  E-value=4.7e-29  Score=213.42  Aligned_cols=195  Identities=25%  Similarity=0.204  Sum_probs=156.5

Q ss_pred             HHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCC
Q 042560           63 LAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFE  142 (287)
Q Consensus        63 ia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~  142 (287)
                      +|++|+++|++|++++|+.++.+.            ..++++|++|.++++++++++.   +++|++|||||...     
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~~------------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~-----   60 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMTL------------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG-----   60 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhhh------------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC-----
Confidence            478999999999999998765320            2346899999999999988764   68999999999742     


Q ss_pred             CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC---------------------------CCCCCCh
Q 042560          143 DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW---------------------------LPPPRMS  195 (287)
Q Consensus       143 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~---------------------------~~~~~~~  195 (287)
                          .+.+++.+++|+.+++.+++.++|.|.+ +|+||++||..+.                           .+.++..
T Consensus        61 ----~~~~~~~~~vN~~~~~~l~~~~~~~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (241)
T PRK12428         61 ----TAPVELVARVNFLGLRHLTEALLPRMAP-GGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALAT  135 (241)
T ss_pred             ----CCCHHHhhhhchHHHHHHHHHHHHhccC-CcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCccc
Confidence                1457789999999999999999999865 5899999999876                           3566788


Q ss_pred             hhhhhHHHHHHHHHHHH-HHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLR-VEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la-~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      .|++||+|++++++.++ .|++++ |+||+|+||+++|+|........     ..+...+...+..++.+|||+|+.+++
T Consensus       136 ~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~-----~~~~~~~~~~~~~~~~~pe~va~~~~~  210 (241)
T PRK12428        136 GYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSML-----GQERVDSDAKRMGRPATADEQAAVLVF  210 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhh-----hhHhhhhcccccCCCCCHHHHHHHHHH
Confidence            99999999999999999 999887 99999999999999875421100     001111122234456689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      ++++.++++||+.+
T Consensus       211 l~s~~~~~~~G~~i  224 (241)
T PRK12428        211 LCSDAARWINGVNL  224 (241)
T ss_pred             HcChhhcCccCcEE
Confidence            99999999999853

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.6e-27  Score=200.06  Aligned_cols=205  Identities=21%  Similarity=0.211  Sum_probs=163.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+++||++++++|+++|++|++++|+.+..++...    .   .+.++.+|+++.++++++++++.+  +++|
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~----~---~~~~~~~D~~~~~~v~~~~~~~~~--~~~d   72 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA----L---GAEALALDVADPASVAGLAWKLDG--EALD   72 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh----c---cceEEEecCCCHHHHHHHHHHhcC--CCCC
Confidence            579999999999999999999999999999999776654332    1   255789999999999998877643  4799


Q ss_pred             EEEEccccCCCC-CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC---hhhhhhHHH
Q 042560          128 HLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM---SFYNASKAA  203 (287)
Q Consensus       128 vli~nag~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~---~~Y~asKaa  203 (287)
                      ++|||+|..... ......+.+++++.+++|+.+++.++++++|.|.+++|+++++||..+..+....   ..|+++|++
T Consensus        73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~Y~~sK~a  152 (222)
T PRK06953         73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGTTGWLYRASKAA  152 (222)
T ss_pred             EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCCCccccHHhHHH
Confidence            999999986432 2222234578899999999999999999999997767899999998876654322   359999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      ++++++.++.++. .++||+|.||+++|++...                      .+...+++.+..++.++.....-.+
T Consensus       153 ~~~~~~~~~~~~~-~i~v~~v~Pg~i~t~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~  209 (222)
T PRK06953        153 LNDALRAASLQAR-HATCIALHPGWVRTDMGGA----------------------QAALDPAQSVAGMRRVIAQATRRDN  209 (222)
T ss_pred             HHHHHHHHhhhcc-CcEEEEECCCeeecCCCCC----------------------CCCCCHHHHHHHHHHHHHhcCcccC
Confidence            9999999999874 4999999999999998542                      1123578899999988776544444


Q ss_pred             C
Q 042560          284 Q  284 (287)
Q Consensus       284 G  284 (287)
                      |
T Consensus       210 ~  210 (222)
T PRK06953        210 G  210 (222)
T ss_pred             c
Confidence            3

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.96  E-value=5.7e-27  Score=198.10  Aligned_cols=212  Identities=30%  Similarity=0.383  Sum_probs=171.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .|+++||||+|+||++++++|+++ ++|++++|+.++.++..+..     ..+.++.+|++|.+++++++++.    +++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~----~~i   72 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL-----PGATPFPVDLTDPEAIAAAVEQL----GRL   72 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh-----ccceEEecCCCCHHHHHHHHHhc----CCC
Confidence            578999999999999999999999 99999999987765543322     13778899999999988887643    579


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      |++||++|........+ .+.+.+.+.++.|+.+++.+.+.+++.++++.+++|++||..+..+.++...|+++|+++++
T Consensus        73 d~vi~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~~K~a~~~  151 (227)
T PRK08219         73 DVLVHNAGVADLGPVAE-STVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRANPGWGSYAASKFALRA  151 (227)
T ss_pred             CEEEECCCcCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcCCCCchHHHHHHHHHH
Confidence            99999999866544333 24467888999999999999999999998877899999999998888899999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          207 LYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       207 ~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +++.++.++...++++++.||+++|++........           ........+.+|+|+|+.++++++.+.+
T Consensus       152 ~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~dva~~~~~~l~~~~~  214 (227)
T PRK08219        152 LADALREEEPGNVRVTSVHPGRTDTDMQRGLVAQE-----------GGEYDPERYLRPETVAKAVRFAVDAPPD  214 (227)
T ss_pred             HHHHHHHHhcCCceEEEEecCCccchHhhhhhhhh-----------ccccCCCCCCCHHHHHHHHHHHHcCCCC
Confidence            99999988764499999999999988654321100           0011123356799999999999987643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.95  E-value=5.4e-26  Score=206.29  Aligned_cols=200  Identities=19%  Similarity=0.172  Sum_probs=153.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||+||||++++++|+++|++|++++|+.+++++...   ... ..+..+.+|++|++++.+.+      
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~---~~~-~~v~~v~~Dvsd~~~v~~~l------  243 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN---GED-LPVKTLHWQVGQEAALAELL------  243 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hcC-CCeEEEEeeCCCHHHHHHHh------
Confidence            45689999999999999999999999999999999998776543221   111 24677889999998876543      


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-----CEEEEEcCCCCCCCCCCChhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-----GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-----g~iv~isS~~~~~~~~~~~~Y  197 (287)
                       +++|++|||||.....   + .+.+++++.+++|+.+++.+++.++|.|++++     +.+|++|+ ++. +.+..+.|
T Consensus       244 -~~IDiLInnAGi~~~~---~-~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~-~~~~~~~Y  316 (406)
T PRK07424        244 -EKVDILIINHGINVHG---E-RTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEV-NPAFSPLY  316 (406)
T ss_pred             -CCCCEEEECCCcCCCC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-ccc-cCCCchHH
Confidence             5799999999986432   2 34467899999999999999999999997643     24566654 333 33556789


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++||+|+.+++. ++++.. .+.|..+.||+++|++..                       ....+||++|+.+++++++
T Consensus       317 ~ASKaAl~~l~~-l~~~~~-~~~I~~i~~gp~~t~~~~-----------------------~~~~spe~vA~~il~~i~~  371 (406)
T PRK07424        317 ELSKRALGDLVT-LRRLDA-PCVVRKLILGPFKSNLNP-----------------------IGVMSADWVAKQILKLAKR  371 (406)
T ss_pred             HHHHHHHHHHHH-HHHhCC-CCceEEEEeCCCcCCCCc-----------------------CCCCCHHHHHHHHHHHHHC
Confidence            999999999985 444432 266777889999987631                       0134799999999999999


Q ss_pred             CCccccC
Q 042560          278 GDRYLTQ  284 (287)
Q Consensus       278 ~~~~itG  284 (287)
                      +++++.-
T Consensus       372 ~~~~i~v  378 (406)
T PRK07424        372 DFRNIIV  378 (406)
T ss_pred             CCCEEEe
Confidence            8887654

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.92  E-value=5e-24  Score=225.93  Aligned_cols=183  Identities=17%  Similarity=0.127  Sum_probs=155.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCCh-------------------------------------------
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRE-------------------------------------------   81 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~-------------------------------------------   81 (287)
                      ++++++||||++|||+++|++|+++ |++|++++|+.                                           
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5899999999999999999999998 69999999982                                           


Q ss_pred             ----hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchheh
Q 042560           82 ----RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN  157 (287)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n  157 (287)
                          .+.++..+.++..+ .++.++.+|++|.++++++++++.++ +++|++|||||+.....+.+. +.++|++++++|
T Consensus      2076 ~~~~~ei~~~la~l~~~G-~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~-t~e~f~~v~~~n 2152 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAG-ASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDK-TLEEFNAVYGTK 2152 (2582)
T ss_pred             cchhHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccC-CHHHHHHHHHHH
Confidence                11112223333333 46889999999999999999999887 789999999999877666554 558999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          158 FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       158 ~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      +.|.+.+++++.+.+.   ++||++||..+..+.++++.|+++|++++.+++.++.++.. ++|++|+||+++|+|..
T Consensus      2153 v~G~~~Ll~al~~~~~---~~IV~~SSvag~~G~~gqs~YaaAkaaL~~la~~la~~~~~-irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813      2153 VDGLLSLLAALNAENI---KLLALFSSAAGFYGNTGQSDYAMSNDILNKAALQLKALNPS-AKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred             HHHHHHHHHHHHHhCC---CeEEEEechhhcCCCCCcHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEECCeecCCccc
Confidence            9999999888866433   48999999999999999999999999999999999999854 89999999999998853

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.89  E-value=4e-22  Score=161.18  Aligned_cols=175  Identities=23%  Similarity=0.219  Sum_probs=142.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHH---HHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREV---ADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |+++||||++|||.+++++|+++|+ .|++++|+....+..   .+.++..+ .++..+.+|++++++++++++++.+++
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALG-AEVTVVACDVADRAALAAALAAIPARL   79 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999997 688888876543322   23333333 468889999999999999999998888


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||+|.....+..+ .+.+++++.++.|+.+++.+.+.+.+   .+.++++++||..+..+.++...|+++|++
T Consensus        80 ~~id~li~~ag~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~  155 (180)
T smart00822       80 GPLRGVIHAAGVLDDGLLAN-LTPERFAAVLAPKVDGAWNLHELTRD---LPLDFFVLFSSVAGVLGNPGQANYAAANAF  155 (180)
T ss_pred             CCeeEEEEccccCCcccccc-CCHHHHHHhhchHhHHHHHHHHHhcc---CCcceEEEEccHHHhcCCCCchhhHHHHHH
Confidence            99999999999876554444 34477899999999999999998732   234799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCccc
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIE  230 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~  230 (287)
                      ++.+++.++.+   .+++.++.||+++
T Consensus       156 ~~~~~~~~~~~---~~~~~~~~~g~~~  179 (180)
T smart00822      156 LDALAAHRRAR---GLPATSINWGAWA  179 (180)
T ss_pred             HHHHHHHHHhc---CCceEEEeecccc
Confidence            99999876543   2678999999875

It uses NADPH to reduce the keto group to a hydroxy group.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.89  E-value=3.9e-21  Score=178.88  Aligned_cols=216  Identities=14%  Similarity=0.122  Sum_probs=154.8

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-----C---CCeeEEEeecCCCHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-----G---SPFALAIPADVSKVEDC  112 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-----~---~~~~~~~~~D~~~~~~v  112 (287)
                      ......||+++||||+|+||++++++|+++|++|++++|+.++++.+.+++...     +   ..++.++.+|++|.+++
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI  153 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI  153 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence            344457899999999999999999999999999999999998887766655321     1   13578899999999887


Q ss_pred             HHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCC
Q 042560          113 KHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPP  191 (287)
Q Consensus       113 ~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~  191 (287)
                      .+.+       +++|++|||+|....       ...++...+++|+.+..++++++...   +.++||++||..+. .+.
T Consensus       154 ~~aL-------ggiDiVVn~AG~~~~-------~v~d~~~~~~VN~~Gt~nLl~Aa~~a---gVgRIV~VSSiga~~~g~  216 (576)
T PLN03209        154 GPAL-------GNASVVICCIGASEK-------EVFDVTGPYRIDYLATKNLVDAATVA---KVNHFILVTSLGTNKVGF  216 (576)
T ss_pred             HHHh-------cCCCEEEEccccccc-------cccchhhHHHHHHHHHHHHHHHHHHh---CCCEEEEEccchhcccCc
Confidence            6543       579999999987531       11345667888998888888876532   34799999998764 333


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~  270 (287)
                      +.. .|. +|+++..+.+.+..++... |+++.|+||+++|++..... .  ......   ... ....+..+++|||+.
T Consensus       217 p~~-~~~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~-t--~~v~~~---~~d-~~~gr~isreDVA~v  287 (576)
T PLN03209        217 PAA-ILN-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKE-T--HNLTLS---EED-TLFGGQVSNLQVAEL  287 (576)
T ss_pred             ccc-chh-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCcccccc-c--cceeec---ccc-ccCCCccCHHHHHHH
Confidence            322 244 7888888888888888776 99999999999988543210 0  000000   000 112334579999999


Q ss_pred             HHHhhccC-Cccc
Q 042560          271 IVNSACRG-DRYL  282 (287)
Q Consensus       271 i~~l~~~~-~~~i  282 (287)
                      ++++++++ ++++
T Consensus       288 VvfLasd~~as~~  300 (576)
T PLN03209        288 MACMAKNRRLSYC  300 (576)
T ss_pred             HHHHHcCchhccc
Confidence            99999955 3544

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=99.88  E-value=7.7e-22  Score=162.50  Aligned_cols=191  Identities=21%  Similarity=0.224  Sum_probs=162.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-----eEEEEeCChhHHHHHHHHHHhcC---CCeeEEEeecCCCHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-----RLVLVARRERQLREVADQAELMG---SPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-----~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..|+++|||++||||.++|++|.+..-     ++++++|+.++.++..+.+....   ...+.++..|+++..++.++.+
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            468999999999999999999998643     57889999999999888886643   3368899999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCC--------------------------CCCCCcccchhehhhhHHHHHHHHHHH
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDY--------------------------TDITKPAPAMDINFWGSAYGTYFAIPY  171 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~--------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~~  171 (287)
                      ++.+++.++|.++.|||..+..+..+.                          .+-|++..+++.|++|++.+.+.+.|+
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence            999999999999999998865443321                          234667889999999999999999999


Q ss_pred             HhcCC-CEEEEEcCCCCCCC---------CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCC
Q 042560          172 LKQTK-GKIIVVASAAGWLP---------PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGG  236 (287)
Q Consensus       172 l~~~~-g~iv~isS~~~~~~---------~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~  236 (287)
                      +-.++ ..+|++||..+...         ..+...|+.||.+++-+.-.+.+.+.+- +.-+.++||...|.+...
T Consensus       162 l~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~~~~~  237 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNSFSE  237 (341)
T ss_pred             hhcCCCCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecchhhh
Confidence            87655 49999999988643         3456789999999999999999998876 888999999999987654

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.86  E-value=1.1e-19  Score=161.41  Aligned_cols=190  Identities=16%  Similarity=0.094  Sum_probs=139.1

Q ss_pred             CCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeCChhHHH------------HHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           45 VAGKVVLITGASSGIGKH--LAYEYARRRARLVLVARRERQLR------------EVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~a--ia~~L~~~G~~vv~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      --+|++||||+++|||.+  +|+.| +.|++++++++..+..+            ...+.++..+ ..+..+++|+++.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G-~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAG-LYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcC-CceEEEEcCCCCHH
Confidence            357999999999999999  89999 99999988885432211            2333333333 35778899999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCC-------------C-------CCCCCccc-----c------hhehhh
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED-------------Y-------TDITKPAP-----A------MDINFW  159 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~-------------~-------~~~~~~~~-----~------~~~n~~  159 (287)
                      +++++++++.+++|++|++|||+|......+..             .       .+.+++..     .      -+++++
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vM  196 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVM  196 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhh
Confidence            999999999999999999999999884432100             0       00011100     0      112222


Q ss_pred             hH---HHH--HHHHHHHHhcCCCEEEEEcCCCCCCCCCCC--hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccC
Q 042560          160 GS---AYG--TYFAIPYLKQTKGKIIVVASAAGWLPPPRM--SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIES  231 (287)
Q Consensus       160 ~~---~~l--~~~~~~~l~~~~g~iv~isS~~~~~~~~~~--~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t  231 (287)
                      |.   ..+  .....+.|.+ ++++|.+|...+....|.+  ..-+.+|++|+.-++.|+.++++. +|+|++.+|++.|
T Consensus       197 ggedw~~Wi~al~~a~lla~-g~~~va~TY~G~~~t~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~i~~g~~~T  275 (398)
T PRK13656        197 GGEDWELWIDALDEAGVLAE-GAKTVAYSYIGPELTHPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYVSVLKAVVT  275 (398)
T ss_pred             ccchHHHHHHHHHhcccccC-CcEEEEEecCCcceeecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccc
Confidence            22   122  3444455643 6899999999998887776  589999999999999999999988 9999999999999


Q ss_pred             CCcCCc
Q 042560          232 EITGGK  237 (287)
Q Consensus       232 ~~~~~~  237 (287)
                      .-....
T Consensus       276 ~Ass~I  281 (398)
T PRK13656        276 QASSAI  281 (398)
T ss_pred             hhhhcC
Confidence            866543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.85  E-value=8.3e-20  Score=162.91  Aligned_cols=201  Identities=18%  Similarity=0.208  Sum_probs=148.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++|+++||||+|+||++++++|+++|  ++|++.+|+.....+..+..   ...++.++.+|++|.+++.++++     
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~~~~~v~~Dl~d~~~l~~~~~-----   73 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAPCLRFFIGDVRDKERLTRALR-----   73 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHh-----
Confidence            478999999999999999999999986  68999998866544333322   12358889999999999887764     


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                        ++|++||+||..... .    ......+.+++|+.++.++++++.+.   +.+++|++||.....|   ...|+++|+
T Consensus        74 --~iD~Vih~Ag~~~~~-~----~~~~~~~~~~~Nv~g~~~ll~aa~~~---~~~~iV~~SS~~~~~p---~~~Y~~sK~  140 (324)
T TIGR03589        74 --GVDYVVHAAALKQVP-A----AEYNPFECIRTNINGAQNVIDAAIDN---GVKRVVALSTDKAANP---INLYGATKL  140 (324)
T ss_pred             --cCCEEEECcccCCCc-h----hhcCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEeCCCCCCC---CCHHHHHHH
Confidence              589999999975321 1    11233568999999999999998652   2369999999766544   467999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc---CCC---------CCCHHHHHH
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---LLP---------VQPTEECAK  269 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~p~evA~  269 (287)
                      +.+.+++.++.+.... +++++++||.+..+... .          .+.+.+....   ..+         +-.++|+++
T Consensus       141 ~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~-~----------i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~  209 (324)
T TIGR03589       141 ASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS-V----------VPFFKSLKEEGVTELPITDPRMTRFWITLEQGVN  209 (324)
T ss_pred             HHHHHHHHHHhhccccCcEEEEEeecceeCCCCC-c----------HHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHH
Confidence            9999999998877666 99999999999986311 0          0111111110   011         225899999


Q ss_pred             HHHHhhcc
Q 042560          270 AIVNSACR  277 (287)
Q Consensus       270 ~i~~l~~~  277 (287)
                      +++.++..
T Consensus       210 a~~~al~~  217 (324)
T TIGR03589       210 FVLKSLER  217 (324)
T ss_pred             HHHHHHhh
Confidence            99999865

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK06720 hypothetical protein; Provisional

Probab=99.83  E-value=3e-19  Score=144.18  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=116.0

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..|++++|+++||||++|||+++++.|+++|++|++++|+.+..++..+++...+ .+...+.+|+++.++++++++++.
T Consensus        10 ~~~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~v~~~~   88 (169)
T PRK06720         10 MKMKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG-GEALFVSYDMEKQGDWQRVISITL   88 (169)
T ss_pred             cccccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999888777767766444 357788999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--------CEEEEEcCCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--------GKIIVVASAAGW  188 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--------g~iv~isS~~~~  188 (287)
                      +.+|++|++|||||.....+..+..+.++ .+  ..|+.+.+..++.+.+.|.+++        |++..+|+.+..
T Consensus        89 ~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (169)
T PRK06720         89 NAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS  161 (169)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence            99999999999999876554444323233 33  6677777889999998876542        677788876554

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=8.2e-19  Score=156.45  Aligned_cols=211  Identities=18%  Similarity=0.168  Sum_probs=150.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|+++||||+|+||++++++|+++|++|++++|+....++........+ ..++.++.+|++|.++++++++       
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~-------   76 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID-------   76 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc-------
Confidence            57999999999999999999999999999999888765544322222111 2358889999999998887764       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP------------  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~------------  192 (287)
                      ++|++|||||....    . .+.+.+.+.+++|+.++..+++++.+.+  +.+++|++||..+..+..            
T Consensus        77 ~~d~vih~A~~~~~----~-~~~~~~~~~~~~n~~g~~~ll~a~~~~~--~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~  149 (325)
T PLN02989         77 GCETVFHTASPVAI----T-VKTDPQVELINPAVNGTINVLRTCTKVS--SVKRVILTSSMAAVLAPETKLGPNDVVDET  149 (325)
T ss_pred             CCCEEEEeCCCCCC----C-CCCChHHHHHHHHHHHHHHHHHHHHHcC--CceEEEEecchhheecCCccCCCCCccCcC
Confidence            58999999996432    1 1225567889999999999999987753  246999999976543210            


Q ss_pred             ----------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC-
Q 042560          193 ----------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-  261 (287)
Q Consensus       193 ----------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  261 (287)
                                ....|+.+|.+.+.+++.++++++  +.+..+.|+.+..|......   .   .....+.+....+.+. 
T Consensus       150 ~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilR~~~vyGp~~~~~~---~---~~~~~i~~~~~~~~~~~  221 (325)
T PLN02989        150 FFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDNE--IDLIVLNPGLVTGPILQPTL---N---FSVAVIVELMKGKNPFN  221 (325)
T ss_pred             CCCchhHhcccccchHHHHHHHHHHHHHHHHHcC--CeEEEEcCCceeCCCCCCCC---C---chHHHHHHHHcCCCCCC
Confidence                      024699999999999999887765  78889999999988643210   0   0011111111111122 


Q ss_pred             ------CCHHHHHHHHHHhhccC
Q 042560          262 ------QPTEECAKAIVNSACRG  278 (287)
Q Consensus       262 ------~~p~evA~~i~~l~~~~  278 (287)
                            ...+|+|++++.++..+
T Consensus       222 ~~~r~~i~v~Dva~a~~~~l~~~  244 (325)
T PLN02989        222 TTHHRFVDVRDVALAHVKALETP  244 (325)
T ss_pred             CcCcCeeEHHHHHHHHHHHhcCc
Confidence                  23799999999988753

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.83  E-value=4.6e-20  Score=151.00  Aligned_cols=174  Identities=24%  Similarity=0.244  Sum_probs=132.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh---hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA-RLVLVARRE---RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++||||.+|||..+++.|+++|. ++++++|+.   ...++..++++..+ .++.++.+|++|+++++++++++.++++
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g-~~v~~~~~Dv~d~~~v~~~~~~~~~~~~   80 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAG-ARVEYVQCDVTDPEAVAAALAQLRQRFG   80 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT--EEEEEE--TTSHHHHHHHHHTSHTTSS
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCC-CceeeeccCccCHHHHHHHHHHHHhccC
Confidence            789999999999999999999987 899999993   23455667777665 4899999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ++|.+||.+|......+.+. +.++++..+...+.+...+.+.+.+   ..-..+|.+||..+..+.+++..|+++.+.+
T Consensus        81 ~i~gVih~ag~~~~~~~~~~-t~~~~~~~~~~Kv~g~~~L~~~~~~---~~l~~~i~~SSis~~~G~~gq~~YaaAN~~l  156 (181)
T PF08659_consen   81 PIDGVIHAAGVLADAPIQDQ-TPDEFDAVLAPKVRGLWNLHEALEN---RPLDFFILFSSISSLLGGPGQSAYAAANAFL  156 (181)
T ss_dssp             -EEEEEE-------B-GCC---HHHHHHHHHHHHHHHHHHHHHHTT---TTTSEEEEEEEHHHHTT-TTBHHHHHHHHHH
T ss_pred             CcceeeeeeeeecccccccC-CHHHHHHHHhhhhhHHHHHHHHhhc---CCCCeEEEECChhHhccCcchHhHHHHHHHH
Confidence            99999999999877766664 4578888999999998888777644   2236999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEEeCCccc
Q 042560          205 IALYETLRVEFGGDIGITIVTPGLIE  230 (287)
Q Consensus       205 ~~~~~~la~e~~~~i~v~~i~PG~v~  230 (287)
                      +.+++..+.. +  .++.+|..|+.+
T Consensus       157 da~a~~~~~~-g--~~~~sI~wg~W~  179 (181)
T PF08659_consen  157 DALARQRRSR-G--LPAVSINWGAWD  179 (181)
T ss_dssp             HHHHHHHHHT-T--SEEEEEEE-EBS
T ss_pred             HHHHHHHHhC-C--CCEEEEEccccC
Confidence            9999977654 3  456777776654

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.81  E-value=1.8e-18  Score=155.87  Aligned_cols=175  Identities=16%  Similarity=0.113  Sum_probs=133.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++||+++||||+|+||.+++++|+++|++|++++|+..........+..  ..++..+.+|++|.+++.+++++.     
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~-----   74 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL--AKKIEDHFGDIRDAAKLRKAIAEF-----   74 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh--cCCceEEEccCCCHHHHHHHHhhc-----
Confidence            4689999999999999999999999999999999987654333222221  124777899999999998888753     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------CCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------PPP  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------~~~  192 (287)
                      ++|++||+||.....     .+.+++...+++|+.++..+++++.+ . ...+++|++||.....            +..
T Consensus        75 ~~d~vih~A~~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~-~-~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~  147 (349)
T TIGR02622        75 KPEIVFHLAAQPLVR-----KSYADPLETFETNVMGTVNLLEAIRA-I-GSVKAVVNVTSDKCYRNDEWVWGYRETDPLG  147 (349)
T ss_pred             CCCEEEECCcccccc-----cchhCHHHHHHHhHHHHHHHHHHHHh-c-CCCCEEEEEechhhhCCCCCCCCCccCCCCC
Confidence            589999999964321     12245667889999999999998743 1 1136999999863221            123


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCC-----CeEEEEEeCCcccCCC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGG-----DIGITIVTPGLIESEI  233 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~-----~i~v~~i~PG~v~t~~  233 (287)
                      +...|+.+|++.+.+++.++.++.+     .++++.+.|+.+..+.
T Consensus       148 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       148 GHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            4568999999999999999988743     4999999999998863

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.79  E-value=2.1e-17  Score=147.27  Aligned_cols=210  Identities=17%  Similarity=0.143  Sum_probs=146.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      -.||+++||||+|+||.+++++|+++|++|+++.|+....+...+.....+ ..++.++.+|++|.++++++++      
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------   76 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE------   76 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh------
Confidence            468999999999999999999999999999999998765443332222111 2358889999999998877765      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCC-----------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPP-----------  191 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~-----------  191 (287)
                       ++|++||+|+.....      ..+...+.++.|+.+...+++++...  .+-+++|++||.... ++.           
T Consensus        77 -~~d~vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~~~~~~--~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E  147 (322)
T PLN02986         77 -GCDAVFHTASPVFFT------VKDPQTELIDPALKGTINVLNTCKET--PSVKRVILTSSTAAVLFRQPPIEANDVVDE  147 (322)
T ss_pred             -CCCEEEEeCCCcCCC------CCCchhhhhHHHHHHHHHHHHHHHhc--CCccEEEEecchhheecCCccCCCCCCcCc
Confidence             589999999974321      11223457899999999988886432  122699999997643 111           


Q ss_pred             -----C-----CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---
Q 042560          192 -----P-----RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---  258 (287)
Q Consensus       192 -----~-----~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---  258 (287)
                           |     ....|+.+|.+.+.+++.+.++++  +++..++|+.+.+|......   .    ........+...   
T Consensus       148 ~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~--~~~~~lrp~~v~Gp~~~~~~---~----~~~~~~~~~~~g~~~  218 (322)
T PLN02986        148 TFFSDPSLCRETKNWYPLSKILAENAAWEFAKDNG--IDMVVLNPGFICGPLLQPTL---N----FSVELIVDFINGKNL  218 (322)
T ss_pred             ccCCChHHhhccccchHHHHHHHHHHHHHHHHHhC--CeEEEEcccceeCCCCCCCC---C----ccHHHHHHHHcCCCC
Confidence                 0     135699999999999998887764  88999999999998643210   0    001111111111   


Q ss_pred             -----CCCCCHHHHHHHHHHhhccC
Q 042560          259 -----LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 -----~~~~~p~evA~~i~~l~~~~  278 (287)
                           ..+-..+|+|++++.++..+
T Consensus       219 ~~~~~~~~v~v~Dva~a~~~al~~~  243 (322)
T PLN02986        219 FNNRFYRFVDVRDVALAHIKALETP  243 (322)
T ss_pred             CCCcCcceeEHHHHHHHHHHHhcCc
Confidence                 11235999999999998754

>PLN02583 cinnamoyl-CoA reductase

Probab=99.77  E-value=6.5e-17  Score=142.59  Aligned_cols=209  Identities=11%  Similarity=0.011  Sum_probs=142.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH--HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ--LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +-++|+++||||+|+||++++++|+++|++|+++.|+...  .++....+... ..++.++.+|++|.+++.+++.    
T Consensus         3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~-~~~~~~~~~Dl~d~~~~~~~l~----   77 (297)
T PLN02583          3 DESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCE-EERLKVFDVDPLDYHSILDALK----   77 (297)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccC-CCceEEEEecCCCHHHHHHHHc----
Confidence            3367899999999999999999999999999999986432  22222222211 2357888999999988866553    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-C--------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-P--------  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-~--------  192 (287)
                         ..|.++|.++....      .. +.+++.+++|+.++..+++++.+.+  +.++||++||..+.... +        
T Consensus        78 ---~~d~v~~~~~~~~~------~~-~~~~~~~~~nv~gt~~ll~aa~~~~--~v~riV~~SS~~a~~~~~~~~~~~~~~  145 (297)
T PLN02583         78 ---GCSGLFCCFDPPSD------YP-SYDEKMVDVEVRAAHNVLEACAQTD--TIEKVVFTSSLTAVIWRDDNISTQKDV  145 (297)
T ss_pred             ---CCCEEEEeCccCCc------cc-ccHHHHHHHHHHHHHHHHHHHHhcC--CccEEEEecchHheecccccCCCCCCC
Confidence               57888886643211      11 2356789999999999999987753  23699999998654211 0        


Q ss_pred             -----C--------ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC
Q 042560          193 -----R--------MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL  259 (287)
Q Consensus       193 -----~--------~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (287)
                           .        ...|+.||...+.++..++++.+  +++++++|+.+.+|........    .........  ....
T Consensus       146 ~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~g--i~~v~lrp~~v~Gp~~~~~~~~----~~~~~~~~~--~~~~  217 (297)
T PLN02583        146 DERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDRG--VNMVSINAGLLMGPSLTQHNPY----LKGAAQMYE--NGVL  217 (297)
T ss_pred             CcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHhC--CcEEEEcCCcccCCCCCCchhh----hcCCcccCc--ccCc
Confidence                 0        01599999999999988876653  8999999999998864321000    000000000  0011


Q ss_pred             CCCCHHHHHHHHHHhhcc
Q 042560          260 PVQPTEECAKAIVNSACR  277 (287)
Q Consensus       260 ~~~~p~evA~~i~~l~~~  277 (287)
                      .+-..+|+|++++.++..
T Consensus       218 ~~v~V~Dva~a~~~al~~  235 (297)
T PLN02583        218 VTVDVNFLVDAHIRAFED  235 (297)
T ss_pred             ceEEHHHHHHHHHHHhcC
Confidence            233589999999999874

>PLN02650 dihydroflavonol-4-reductase

Probab=99.77  E-value=4.6e-17  Score=146.77  Aligned_cols=212  Identities=15%  Similarity=0.062  Sum_probs=147.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..+|+++||||+|.||.+++++|+++|++|++++|+.+..+.........+ ..++.++.+|++|.+.++++++      
T Consensus         3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------   76 (351)
T PLN02650          3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------   76 (351)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh------
Confidence            457889999999999999999999999999999998766554433222111 1257888999999988877764      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----C-------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP----P-------  192 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~----~-------  192 (287)
                       .+|++||+|+.....      ..+.....+++|+.++..+++++.+..  ..+++|++||.....+.    +       
T Consensus        77 -~~d~ViH~A~~~~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~~~r~v~~SS~~~~~~~~~~~~~~~E~~~  147 (351)
T PLN02650         77 -GCTGVFHVATPMDFE------SKDPENEVIKPTVNGMLSIMKACAKAK--TVRRIVFTSSAGTVNVEEHQKPVYDEDCW  147 (351)
T ss_pred             -CCCEEEEeCCCCCCC------CCCchhhhhhHHHHHHHHHHHHHHhcC--CceEEEEecchhhcccCCCCCCccCcccC
Confidence             479999999864311      112335678999999999999986542  12589999987432210    0       


Q ss_pred             -----------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHH--h-h----
Q 042560          193 -----------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIR--D-V----  254 (287)
Q Consensus       193 -----------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~--~-~----  254 (287)
                                 ....|+.||.+.+.+++.++.+++  ++++.+.|+.+.+|.......  .   .......  . .    
T Consensus       148 ~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~Gp~~~~~~~--~---~~~~~~~~~~~~~~~~  220 (351)
T PLN02650        148 SDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENG--LDFISIIPTLVVGPFISTSMP--P---SLITALSLITGNEAHY  220 (351)
T ss_pred             CchhhhhccccccchHHHHHHHHHHHHHHHHHHcC--CeEEEECCCceECCCCCCCCC--c---cHHHHHHHhcCCcccc
Confidence                       123799999999999999988765  899999999999986432110  0   0000000  0 0    


Q ss_pred             -hhcCCCCCCHHHHHHHHHHhhccC
Q 042560          255 -QISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       255 -~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                       ......+...+|+|++++.++..+
T Consensus       221 ~~~~~r~~v~V~Dva~a~~~~l~~~  245 (351)
T PLN02650        221 SIIKQGQFVHLDDLCNAHIFLFEHP  245 (351)
T ss_pred             CcCCCcceeeHHHHHHHHHHHhcCc
Confidence             001112335999999999999753

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.76  E-value=1.3e-16  Score=143.96  Aligned_cols=176  Identities=15%  Similarity=0.071  Sum_probs=128.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .+++++||||+|+||.+++++|+++|++|++++|+....+.....+..  ..++.++.+|++|.+++.++++       .
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~-------~   79 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDEAVK-------G   79 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHHHHc-------C
Confidence            467899999999999999999999999999999987665544443322  2358889999999988877763       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCc--ccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKP--APAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP------------  191 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~--~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~------------  191 (287)
                      +|++||+|+...........+.+.+  ...++.|+.+...+++++.+..  ..+++|++||.+.....            
T Consensus        80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~--~~~~~v~~SS~~vyg~~~~~~~~~~~~~E  157 (353)
T PLN02896         80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK--TVKRVVFTSSISTLTAKDSNGRWRAVVDE  157 (353)
T ss_pred             CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC--CccEEEEEechhhccccccCCCCCCccCc
Confidence            7999999997654321111111222  3456667788888888875531  13689999996543210            


Q ss_pred             -------------CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          192 -------------PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       192 -------------~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                                   +....|+.||.+.+.+++.++++++  +++..+.|+.+..|..
T Consensus       158 ~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~lR~~~vyGp~~  211 (353)
T PLN02896        158 TCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENG--IDLVSVITTTVAGPFL  211 (353)
T ss_pred             ccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcC--CeEEEEcCCcccCCCc
Confidence                         1123799999999999999888775  8899999988888854

>PLN02214 cinnamoyl-CoA reductase

Probab=99.76  E-value=3e-16  Score=141.02  Aligned_cols=206  Identities=17%  Similarity=0.135  Sum_probs=145.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH-HHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV-ADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+++++++||||+|+||.+++++|+++|++|++++|+.+..... ...+.. ...++.++.+|++|.+++.++++    
T Consensus         6 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~----   80 (342)
T PLN02214          6 ASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEALKAAID----   80 (342)
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHHHHHHHh----
Confidence            345788999999999999999999999999999999986643321 122221 12357888999999998887764    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC---------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP---------  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~---------  192 (287)
                         ++|++||+|+...          +.+.+.++.|+.++..+++++...   +-+++|++||..+.++.+         
T Consensus        81 ---~~d~Vih~A~~~~----------~~~~~~~~~nv~gt~~ll~aa~~~---~v~r~V~~SS~~avyg~~~~~~~~~~~  144 (342)
T PLN02214         81 ---GCDGVFHTASPVT----------DDPEQMVEPAVNGAKFVINAAAEA---KVKRVVITSSIGAVYMDPNRDPEAVVD  144 (342)
T ss_pred             ---cCCEEEEecCCCC----------CCHHHHHHHHHHHHHHHHHHHHhc---CCCEEEEeccceeeeccCCCCCCcccC
Confidence               5899999998631          334567889999999988887542   226999999976543210         


Q ss_pred             ------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC--
Q 042560          193 ------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL--  258 (287)
Q Consensus       193 ------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--  258 (287)
                                  ....|+.+|.+.+.+++.++++++  +++..+.|+.+..|......   ...   ...+.......  
T Consensus       145 E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~g--~~~v~lRp~~vyGp~~~~~~---~~~---~~~~~~~~~g~~~  216 (342)
T PLN02214        145 ESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKG--VDLVVLNPVLVLGPPLQPTI---NAS---LYHVLKYLTGSAK  216 (342)
T ss_pred             cccCCChhhccccccHHHHHHHHHHHHHHHHHHHcC--CcEEEEeCCceECCCCCCCC---Cch---HHHHHHHHcCCcc
Confidence                        124699999999999999888765  78899999999888533110   000   00111110100  


Q ss_pred             ------CCCCCHHHHHHHHHHhhcc
Q 042560          259 ------LPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       259 ------~~~~~p~evA~~i~~l~~~  277 (287)
                            ..+-..+|+|++++.++..
T Consensus       217 ~~~~~~~~~i~V~Dva~a~~~al~~  241 (342)
T PLN02214        217 TYANLTQAYVDVRDVALAHVLVYEA  241 (342)
T ss_pred             cCCCCCcCeeEHHHHHHHHHHHHhC
Confidence                  1122499999999998875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.74  E-value=1.3e-16  Score=143.08  Aligned_cols=173  Identities=16%  Similarity=0.067  Sum_probs=126.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++++++||||+|+||++++++|+++|++|+++.|+.................++.++.+|++|.+++.++++       
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   79 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIA-------   79 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHh-------
Confidence            3578899999999999999999999999999888876543322211111111247888999999988877664       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC--------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP--------------  190 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~--------------  190 (287)
                      ++|++||+|+....      ...+.....+++|+.+...+++++.+..  ..+++|++||.+...+              
T Consensus        80 ~~d~vih~A~~~~~------~~~~~~~~~~~~nv~g~~~ll~a~~~~~--~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~  151 (338)
T PLN00198         80 GCDLVFHVATPVNF------ASEDPENDMIKPAIQGVHNVLKACAKAK--SVKRVILTSSAAAVSINKLSGTGLVMNEKN  151 (338)
T ss_pred             cCCEEEEeCCCCcc------CCCChHHHHHHHHHHHHHHHHHHHHhcC--CccEEEEeecceeeeccCCCCCCceecccc
Confidence            57999999985321      1112234567899999999999875531  2369999999754321              


Q ss_pred             ----------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          191 ----------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       191 ----------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                                .+....|+.||.+.+.+++.++.+++  +.+..+.|+.+..|..
T Consensus       152 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~~R~~~vyGp~~  203 (338)
T PLN00198        152 WTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEENN--IDLITVIPTLMAGPSL  203 (338)
T ss_pred             CCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhcC--ceEEEEeCCceECCCc
Confidence                      11245699999999999999888765  7888999999988853

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.74  E-value=5.7e-17  Score=145.53  Aligned_cols=175  Identities=19%  Similarity=0.096  Sum_probs=125.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHH---hcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAE---LMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.++|+++||||+|+||.+++++|+++|++|++++|+.+... ...+.+.   .....++.++.+|++|.+++.++++..
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            567899999999999999999999999999999998754211 1111111   011235788999999999998888754


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCC--CCC------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAA--GWL------  189 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~--~~~------  189 (287)
                           ++|++||+||......     ..+.....+++|+.++..+++.+.+...+++  -++|++||..  +..      
T Consensus        83 -----~~d~Vih~A~~~~~~~-----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E  152 (340)
T PLN02653         83 -----KPDEVYNLAAQSHVAV-----SFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSE  152 (340)
T ss_pred             -----CCCEEEECCcccchhh-----hhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCC
Confidence                 5899999999754321     1234456778999999999999988765422  2678887752  211      


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCC----eEEEEEeCCc
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGD----IGITIVTPGL  228 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~----i~v~~i~PG~  228 (287)
                        +......|+.||.+.+.+++.++.+++-.    +.+|.+.||.
T Consensus       153 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~  197 (340)
T PLN02653        153 TTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRR  197 (340)
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCC
Confidence              11235679999999999999999887632    3345555654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.73  E-value=1.3e-16  Score=143.93  Aligned_cols=173  Identities=18%  Similarity=0.129  Sum_probs=122.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEE-EEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLV-LVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++++||||+|+||.+++++|.++|++++ +.++.... .............++.++.+|++|.++++++++.     .++
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~   75 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNLMSLAPVAQSERFAFEKVDICDRAELARVFTE-----HQP   75 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cchhhhhhcccCCceEEEECCCcChHHHHHHHhh-----cCC
Confidence            5799999999999999999999998755 44543221 1111100101122577889999999998888764     268


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh------cCCCEEEEEcCCCCCC-----------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK------QTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~------~~~g~iv~isS~~~~~-----------  189 (287)
                      |++||+||.....     .+.+.++..+++|+.++..+++++.+.+.      ++..++|++||..-..           
T Consensus        76 D~Vih~A~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E  150 (355)
T PRK10217         76 DCVMHLAAESHVD-----RSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTE  150 (355)
T ss_pred             CEEEECCcccCcc-----hhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCC
Confidence            9999999975321     12355678999999999999999987542      1124899998853211           


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                        +..+...|+.||.+.+.+++.++++++  +++..+.|+.+..|-
T Consensus       151 ~~~~~p~s~Y~~sK~~~e~~~~~~~~~~~--~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        151 TTPYAPSSPYSASKASSDHLVRAWLRTYG--LPTLITNCSNNYGPY  194 (355)
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHhC--CCeEEEeeeeeeCCC
Confidence              223466899999999999999988876  556666777666553

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.73  E-value=6.2e-16  Score=137.58  Aligned_cols=210  Identities=17%  Similarity=0.113  Sum_probs=143.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++|+++||||+|+||++++++|+++|++|++++|+............... ..++.++.+|++|.+++.++++       
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~-------   75 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD-------   75 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc-------
Confidence            46899999999999999999999999999999987654332222111111 2357889999999988877764       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CC-C-----------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LP-P-----------  191 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~-~-----------  191 (287)
                      ++|++||+|+.....      ..+...+.+++|+.++..+++++....  +.+++|++||.++. ++ .           
T Consensus        76 ~~d~Vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~a~~~~~--~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~  147 (322)
T PLN02662         76 GCEGVFHTASPFYHD------VTDPQAELIDPAVKGTLNVLRSCAKVP--SVKRVVVTSSMAAVAYNGKPLTPDVVVDET  147 (322)
T ss_pred             CCCEEEEeCCcccCC------CCChHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEccCHHHhcCCCcCCCCCCcCCcc
Confidence            579999999864311      101223678999999999999875421  23589999996531 11 0           


Q ss_pred             ----CC-----ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh-----c
Q 042560          192 ----PR-----MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI-----S  257 (287)
Q Consensus       192 ----~~-----~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-----~  257 (287)
                          |.     ...|+.+|.+.+.+++.+.++++  +++..+.|+.+.+|.......      .......+...     +
T Consensus       148 ~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~lRp~~v~Gp~~~~~~~------~~~~~~~~~~~~~~~~~  219 (322)
T PLN02662        148 WFSDPAFCEESKLWYVLSKTLAEEAAWKFAKENG--IDMVTINPAMVIGPLLQPTLN------TSAEAILNLINGAQTFP  219 (322)
T ss_pred             cCCChhHhhcccchHHHHHHHHHHHHHHHHHHcC--CcEEEEeCCcccCCCCCCCCC------chHHHHHHHhcCCccCC
Confidence                10     14699999999999988877765  888999999999885432100      00111111111     1


Q ss_pred             C--CCCCCHHHHHHHHHHhhccC
Q 042560          258 L--LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       258 ~--~~~~~p~evA~~i~~l~~~~  278 (287)
                      .  ..+...+|+|++++.++..+
T Consensus       220 ~~~~~~i~v~Dva~a~~~~~~~~  242 (322)
T PLN02662        220 NASYRWVDVRDVANAHIQAFEIP  242 (322)
T ss_pred             CCCcCeEEHHHHHHHHHHHhcCc
Confidence            0  11235899999999998754

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.72  E-value=3.8e-16  Score=144.73  Aligned_cols=185  Identities=15%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh---H----H---------HHHHHHHHhcCCCeeEEE
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER---Q----L---------REVADQAELMGSPFALAI  102 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~---~----~---------~~~~~~~~~~~~~~~~~~  102 (287)
                      +-.+.++++++++||||+|+||++++++|+++|++|++++|...   .    .         .+..+.+......++.++
T Consensus        39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v  118 (442)
T PLN02572         39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELY  118 (442)
T ss_pred             CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEE
Confidence            34557778999999999999999999999999999999874211   0    0         011111111112358889


Q ss_pred             eecCCCHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEE
Q 042560          103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVV  182 (287)
Q Consensus       103 ~~D~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~i  182 (287)
                      .+|++|.+.++++++..     ++|++||+|+..... . ...+.++++..+++|+.+..++++++...-  .+.++|++
T Consensus       119 ~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~-~-~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g--v~~~~V~~  189 (442)
T PLN02572        119 VGDICDFEFLSEAFKSF-----EPDAVVHFGEQRSAP-Y-SMIDRSRAVFTQHNNVIGTLNVLFAIKEFA--PDCHLVKL  189 (442)
T ss_pred             ECCCCCHHHHHHHHHhC-----CCCEEEECCCcccCh-h-hhcChhhHHHHHHHHHHHHHHHHHHHHHhC--CCccEEEE
Confidence            99999999998888753     689999999764321 1 111223455668899999999999875531  12489999


Q ss_pred             cCCCCCC------------------------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          183 ASAAGWL------------------------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       183 sS~~~~~------------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      ||.....                        +......|+.+|.+.+.+++.++..++  +.+..+.|+.+..+..
T Consensus       190 SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~g--l~~v~lR~~~vyGp~~  263 (442)
T PLN02572        190 GTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRT  263 (442)
T ss_pred             ecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcC--CCEEEEecccccCCCC
Confidence            8874321                        111235799999999999998887765  7888889988888753

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.71  E-value=2.3e-15  Score=130.86  Aligned_cols=212  Identities=18%  Similarity=0.102  Sum_probs=151.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH--HHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV--ADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++++.||||+|.||..++++|+++||+|..+.|++++.+..  ...++.. +.+...+.+|++|+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a-~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA-KERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC-cccceEEeccccccchHHHHHh------
Confidence            688999999999999999999999999999999999884442  3333322 3469999999999999998886      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-CC---------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-PR---------  193 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-~~---------  193 (287)
                       +.|+++|.|........      +.-.+.++..+.|...+++++...=  +-.|+|++||.++..+. +.         
T Consensus        78 -gcdgVfH~Asp~~~~~~------~~e~~li~pav~Gt~nVL~ac~~~~--sVkrvV~TSS~aAv~~~~~~~~~~~vvdE  148 (327)
T KOG1502|consen   78 -GCDGVFHTASPVDFDLE------DPEKELIDPAVKGTKNVLEACKKTK--SVKRVVYTSSTAAVRYNGPNIGENSVVDE  148 (327)
T ss_pred             -CCCEEEEeCccCCCCCC------CcHHhhhhHHHHHHHHHHHHHhccC--CcceEEEeccHHHhccCCcCCCCCccccc
Confidence             68999999987654321      2122688899999999888875431  12699999999987643 11         


Q ss_pred             --C----------hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---
Q 042560          194 --M----------SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---  258 (287)
Q Consensus       194 --~----------~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---  258 (287)
                        +          ..|+.||...+.-+..++.|-+  +....|+||.|-.|.....   .+......-+..+.....   
T Consensus       149 ~~wsd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e~~--~~lv~inP~lV~GP~l~~~---l~~s~~~~l~~i~G~~~~~~n  223 (327)
T KOG1502|consen  149 ESWSDLDFCRCKKLWYALSKTLAEKAAWEFAKENG--LDLVTINPGLVFGPGLQPS---LNSSLNALLKLIKGLAETYPN  223 (327)
T ss_pred             ccCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC--ccEEEecCCceECCCcccc---cchhHHHHHHHHhcccccCCC
Confidence              1          2488888777776666666643  7888999999999976641   111111111122211111   


Q ss_pred             --CCCCCHHHHHHHHHHhhccC
Q 042560          259 --LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 --~~~~~p~evA~~i~~l~~~~  278 (287)
                        .++...+|||++.+++++.+
T Consensus       224 ~~~~~VdVrDVA~AHv~a~E~~  245 (327)
T KOG1502|consen  224 FWLAFVDVRDVALAHVLALEKP  245 (327)
T ss_pred             CceeeEeHHHHHHHHHHHHcCc
Confidence              11235899999999999876

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.70  E-value=4.9e-15  Score=127.44  Aligned_cols=203  Identities=16%  Similarity=0.157  Sum_probs=129.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~  120 (287)
                      .....+++++||||+|+||++++++|+++|++|+++.|+.++.++...    . ...+.++.+|++|. +++   .+.+.
T Consensus        12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~----~-~~~~~~~~~Dl~d~~~~l---~~~~~   83 (251)
T PLN00141         12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP----Q-DPSLQIVRADVTEGSDKL---VEAIG   83 (251)
T ss_pred             cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc----c-CCceEEEEeeCCCCHHHH---HHHhh
Confidence            344567899999999999999999999999999999998876543221    1 12588899999984 322   22221


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC---CCCCCChhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW---LPPPRMSFY  197 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~---~~~~~~~~Y  197 (287)
                         .++|++|+|+|.....     ..    ...+++|..+...+++++.   +.+.+++|++||....   .+.+....|
T Consensus        84 ---~~~d~vi~~~g~~~~~-----~~----~~~~~~n~~~~~~ll~a~~---~~~~~~iV~iSS~~v~g~~~~~~~~~~~  148 (251)
T PLN00141         84 ---DDSDAVICATGFRRSF-----DP----FAPWKVDNFGTVNLVEACR---KAGVTRFILVSSILVNGAAMGQILNPAY  148 (251)
T ss_pred             ---cCCCEEEECCCCCcCC-----CC----CCceeeehHHHHHHHHHHH---HcCCCEEEEEccccccCCCcccccCcch
Confidence               3689999999864211     01    1234678888878777753   2233799999998632   122334557


Q ss_pred             hhhHHHHHHHH-HHHHHH-hCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          198 NASKAAKIALY-ETLRVE-FGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       198 ~asKaal~~~~-~~la~e-~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      ...|.+...+. +..+.+ +... ++++.|+||++.++..........     ...      ...+..+++|+|+.++.+
T Consensus       149 ~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~~~~-----~~~------~~~~~i~~~dvA~~~~~~  217 (251)
T PLN00141        149 IFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIVMEP-----EDT------LYEGSISRDQVAEVAVEA  217 (251)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEEECC-----CCc------cccCcccHHHHHHHHHHH
Confidence            66665444332 322322 3444 999999999998765321110000     000      011234789999999999


Q ss_pred             hccC
Q 042560          275 ACRG  278 (287)
Q Consensus       275 ~~~~  278 (287)
                      +..+
T Consensus       218 ~~~~  221 (251)
T PLN00141        218 LLCP  221 (251)
T ss_pred             hcCh
Confidence            8754

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.70  E-value=6e-16  Score=139.09  Aligned_cols=159  Identities=15%  Similarity=0.101  Sum_probs=114.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-----HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+++||||+|+||.+++++|+++|++|++++|+.+.     ++...+.........+.++.+|++|.+++.++++..   
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~---   77 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI---   77 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC---
Confidence            689999999999999999999999999999997542     222111111111235788999999999998888753   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PP  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~  191 (287)
                        ++|++||+|+......     ..+.....+++|+.++..+++++.+.-.++..++|++||..-..           +.
T Consensus        78 --~~d~ViH~Aa~~~~~~-----~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~  150 (343)
T TIGR01472        78 --KPTEIYNLAAQSHVKV-----SFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF  150 (343)
T ss_pred             --CCCEEEECCcccccch-----hhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC
Confidence              5899999999764321     11233456788999999999988763111123789988853211           12


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~  216 (287)
                      .....|+.||.+.+.+++.++.+++
T Consensus       151 ~p~~~Y~~sK~~~e~~~~~~~~~~~  175 (343)
T TIGR01472       151 YPRSPYAAAKLYAHWITVNYREAYG  175 (343)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhC
Confidence            2456899999999999999988875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN02240 UDP-glucose 4-epimerase

Probab=99.68  E-value=2.6e-15  Score=135.29  Aligned_cols=172  Identities=16%  Similarity=0.163  Sum_probs=122.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh---cCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL---MGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      |++++|+++||||+|++|.+++++|+++|++|++++|......+.......   ....++.++.+|++|.+++.++++. 
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~-   79 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAS-   79 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHh-
Confidence            567899999999999999999999999999999998754322221111211   1123578899999999999888764 


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC---------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL---------  189 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~---------  189 (287)
                          ..+|++||+||.....     .+.+.+.+.++.|+.++..+++++    .+.+ +++|++||.....         
T Consensus        80 ----~~~d~vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~~vyg~~~~~~~~E  146 (352)
T PLN02240         80 ----TRFDAVIHFAGLKAVG-----ESVAKPLLYYDNNLVGTINLLEVM----AKHGCKKLVFSSSATVYGQPEEVPCTE  146 (352)
T ss_pred             ----CCCCEEEEccccCCcc-----ccccCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEEccHHHhCCCCCCCCCC
Confidence                2789999999975322     122456678899999998888764    2333 6899999853211         


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLI  229 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v  229 (287)
                        +......|+.+|.+.+.+++.++.+.. .+++..+.++.+
T Consensus       147 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~~R~~~v  187 (352)
T PLN02240        147 EFPLSATNPYGRTKLFIEEICRDIHASDP-EWKIILLRYFNP  187 (352)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHhcC-CCCEEEEeecCc
Confidence              112356899999999999998876532 255555565433

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.68  E-value=7.3e-15  Score=131.61  Aligned_cols=169  Identities=19%  Similarity=0.168  Sum_probs=118.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|...........+....+.++.++.+|++|.+++.++++.     .++|+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d~   76 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAIDT   76 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCCCE
Confidence            5899999999999999999999999999886533322222222222223467788999999988887753     36999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC-----------CC-CCCh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL-----------PP-PRMS  195 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~-----------~~-~~~~  195 (287)
                      +||+||......     ..+.....+.+|+.++..+++++.    +.+ +++|++||.....           +. ....
T Consensus        77 vvh~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~  147 (338)
T PRK10675         77 VIHFAGLKAVGE-----SVQKPLEYYDNNVNGTLRLISAMR----AANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQS  147 (338)
T ss_pred             EEECCccccccc-----hhhCHHHHHHHHHHHHHHHHHHHH----HcCCCEEEEeccHHhhCCCCCCccccccCCCCCCC
Confidence            999998754321     113344578888988888877643    333 6899999864321           01 2357


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .|+.+|.+.+.+++.++++... +++..+.|+.+..+
T Consensus       148 ~Y~~sK~~~E~~~~~~~~~~~~-~~~~ilR~~~v~g~  183 (338)
T PRK10675        148 PYGKSKLMVEQILTDLQKAQPD-WSIALLRYFNPVGA  183 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCC-CcEEEEEeeeecCC
Confidence            8999999999999999876432 55666666555444

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.66  E-value=1.1e-14  Score=128.97  Aligned_cols=169  Identities=18%  Similarity=0.148  Sum_probs=122.2

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           49 VVLITGASSGIGKHLAYEYARRR--ARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +++||||+|+||.+++++|+++|  .+|++.+|... ...+..+....  ..++.++.+|++|++++.++++..     +
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~-----~   73 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED--NPRYRFVKGDIGDRELVSRLFTEH-----Q   73 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc--CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence            48999999999999999999987  68888876421 11111122211  124778899999999998887642     5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------CCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------PPPR  193 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------~~~~  193 (287)
                      +|++||+|+.....     ...+.++..+++|+.+...+++.+...+.  +.++|++||.....            +...
T Consensus        74 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~  146 (317)
T TIGR01181        74 PDAVVHFAAESHVD-----RSISGPAAFIETNVVGTYTLLEAVRKYWH--EFRFHHISTDEVYGDLEKGDAFTETTPLAP  146 (317)
T ss_pred             CCEEEEcccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHhcCC--CceEEEeeccceeCCCCCCCCcCCCCCCCC
Confidence            89999999975432     12245566789999999998887755432  34799999854211            1123


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      ...|+.+|.+.+.+++.++.+++  +++..+.|+.+..+.
T Consensus       147 ~~~Y~~sK~~~e~~~~~~~~~~~--~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       147 SSPYSASKAASDHLVRAYHRTYG--LPALITRCSNNYGPY  184 (317)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhC--CCeEEEEeccccCCC
Confidence            45799999999999999988766  778888999887764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.65  E-value=1.5e-15  Score=130.89  Aligned_cols=201  Identities=20%  Similarity=0.230  Sum_probs=140.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC-CCee----EEEeecCCCHHHHHHHHHHHHHhc
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG-SPFA----LAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-~~~~----~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++||||+|.||.+++++|++.+. +++++++++.++-+...+++... ..++    .++.+|++|.+.+++++++.    
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~----   76 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY----   76 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence            68999999999999999999986 79999999999988888885432 2223    45689999999998888653    


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                       ++|+++|.|+.-+.+..+     +.+.+.+.+|+.|+.++++++...   +-.++|++|+--+..|   ...|++||..
T Consensus        77 -~pdiVfHaAA~KhVpl~E-----~~p~eav~tNv~GT~nv~~aa~~~---~v~~~v~ISTDKAv~P---tnvmGatKrl  144 (293)
T PF02719_consen   77 -KPDIVFHAAALKHVPLME-----DNPFEAVKTNVLGTQNVAEAAIEH---GVERFVFISTDKAVNP---TNVMGATKRL  144 (293)
T ss_dssp             -T-SEEEE------HHHHC-----CCHHHHHHHHCHHHHHHHHHHHHT---T-SEEEEEEECGCSS-----SHHHHHHHH
T ss_pred             -CCCEEEEChhcCCCChHH-----hCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEccccccCCC---CcHHHHHHHH
Confidence             799999999986544221     456778999999999999998653   2369999999988876   5789999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC-----------CCHHHHHHHH
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-----------QPTEECAKAI  271 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~p~evA~~i  271 (287)
                      .+.++...+...++. .++.+|.=|-|-....-           ..+-+.++.....|+           .+++|.++.+
T Consensus       145 aE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS-----------Vip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lv  213 (293)
T PF02719_consen  145 AEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS-----------VIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLV  213 (293)
T ss_dssp             HHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS-----------CHHHHHHHHHTTSSEEECETT-EEEEE-HHHHHHHH
T ss_pred             HHHHHHHHhhhCCCCCcEEEEEEecceecCCCc-----------HHHHHHHHHHcCCcceeCCCCcEEEEecHHHHHHHH
Confidence            999999999988555 77777777755432111           123334444444443           2689999999


Q ss_pred             HHhhcc
Q 042560          272 VNSACR  277 (287)
Q Consensus       272 ~~l~~~  277 (287)
                      +..+..
T Consensus       214 l~a~~~  219 (293)
T PF02719_consen  214 LQAAAL  219 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887754

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.65  E-value=1.1e-14  Score=131.28  Aligned_cols=169  Identities=18%  Similarity=0.134  Sum_probs=119.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCe-EEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           49 VVLITGASSGIGKHLAYEYARRRAR-LVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +++||||+|+||.+++++|+++|.+ |+.+++..  ...+... .+.  ...++.++.+|++|.+++++++++     .+
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~Dl~d~~~~~~~~~~-----~~   73 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS--DSERYVFEHADICDRAELDRIFAQ-----HQ   73 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc--cCCceEEEEecCCCHHHHHHHHHh-----cC
Confidence            5899999999999999999999986 55555532  1222211 111  123477889999999999888864     27


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc-----C-CCEEEEEcCCCCCC----------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-----T-KGKIIVVASAAGWL----------  189 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-----~-~g~iv~isS~~~~~----------  189 (287)
                      +|++||+||......     +.+..++.+++|+.++..+++++.+.|++     + ..++|++||.....          
T Consensus        74 ~d~vih~A~~~~~~~-----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~  148 (352)
T PRK10084         74 PDAVMHLAAESHVDR-----SITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVEN  148 (352)
T ss_pred             CCEEEECCcccCCcc-----hhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccc
Confidence            999999999753321     12345678999999999999999887632     1 24899998853211          


Q ss_pred             -----------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          190 -----------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       190 -----------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                                 +......|+.+|.+.+.+++.++.+++  +++..+.|+.+..|
T Consensus       149 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~vilr~~~v~Gp  200 (352)
T PRK10084        149 SEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTYG--LPTIVTNCSNNYGP  200 (352)
T ss_pred             cccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHhC--CCEEEEeccceeCC
Confidence                       112346899999999999999988876  34444566666555

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.64  E-value=4.1e-14  Score=129.82  Aligned_cols=171  Identities=19%  Similarity=0.248  Sum_probs=139.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+.||+++||||+|.||.++|+++++.+. ++++.+|++.++.....+++.. +..+..++.+|+.|.+.++++++.. 
T Consensus       246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~-  324 (588)
T COG1086         246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH-  324 (588)
T ss_pred             hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence            456899999999999999999999999987 7889999999988888888764 3357889999999999999988743 


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                          ++|+++|.|+.-+-+..+     ..+.+.+.+|+.|+.++++++...   +-.++|++|+--+..|   ...||++
T Consensus       325 ----kvd~VfHAAA~KHVPl~E-----~nP~Eai~tNV~GT~nv~~aa~~~---~V~~~V~iSTDKAV~P---tNvmGaT  389 (588)
T COG1086         325 ----KVDIVFHAAALKHVPLVE-----YNPEEAIKTNVLGTENVAEAAIKN---GVKKFVLISTDKAVNP---TNVMGAT  389 (588)
T ss_pred             ----CCceEEEhhhhccCcchh-----cCHHHHHHHhhHhHHHHHHHHHHh---CCCEEEEEecCcccCC---chHhhHH
Confidence                699999999986554221     456778999999999999998553   2259999999999877   5679999


Q ss_pred             HHHHHHHHHHHHHHhCC-CeEEEEEeCCcc
Q 042560          201 KAAKIALYETLRVEFGG-DIGITIVTPGLI  229 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~-~i~v~~i~PG~v  229 (287)
                      |...+.++.+++...+. +-++.+|.=|-|
T Consensus       390 Kr~aE~~~~a~~~~~~~~~T~f~~VRFGNV  419 (588)
T COG1086         390 KRLAEKLFQAANRNVSGTGTRFCVVRFGNV  419 (588)
T ss_pred             HHHHHHHHHHHhhccCCCCcEEEEEEecce
Confidence            99999999999987764 234444554433

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.64  E-value=3.5e-14  Score=126.15  Aligned_cols=169  Identities=15%  Similarity=0.122  Sum_probs=121.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||.+++++|.++|++|++++|......+........+  ++..+.+|+++.++++++++.     +++|+
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~-----~~~d~   73 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERIT--RVTFVEGDLRDRELLDRLFEE-----HKIDA   73 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcccc--ceEEEECCCCCHHHHHHHHHh-----CCCcE
Confidence            37999999999999999999999999988764333222222222111  477888999999999888763     47999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||+||......     ..+...+.+..|+.++..+++++..   .+.+++|++||......           ......|
T Consensus        74 vv~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y  145 (328)
T TIGR01179        74 VIHFAGLIAVGE-----SVQDPLKYYRNNVVNTLNLLEAMQQ---TGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPY  145 (328)
T ss_pred             EEECccccCcch-----hhcCchhhhhhhHHHHHHHHHHHHh---cCCCEEEEecchhhcCCCCCCCccccCCCCCCCch
Confidence            999999754321     2234456788899999888877532   22368999888543211           1134679


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      +.+|++.+.+++.++++. .++++..+.|+.+..+-
T Consensus       146 ~~sK~~~e~~~~~~~~~~-~~~~~~ilR~~~v~g~~  180 (328)
T TIGR01179       146 GRSKLMSERILRDLSKAD-PGLSYVILRYFNVAGAD  180 (328)
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCCEEEEecCcccCCC
Confidence            999999999999998762 23788888998877763

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN02686 cinnamoyl-CoA reductase

Probab=99.63  E-value=2.1e-14  Score=130.27  Aligned_cols=211  Identities=12%  Similarity=0.063  Sum_probs=140.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-----CCeeEEEeecCCCHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-----SPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .+.++|+++||||+|+||.+++++|+++|++|+++.|+.+..+.+. .+...+     ...+.++.+|++|.+++.++++
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            4567999999999999999999999999999999888876655442 221111     1247788999999999888775


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC-CCC------
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-WLP------  190 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~-~~~------  190 (287)
                             .+|.+||.++........     .......++|+.+...+++++...  .+-.++|++||..+ .++      
T Consensus       128 -------~~d~V~hlA~~~~~~~~~-----~~~~~~~~~nv~gt~~llea~~~~--~~v~r~V~~SS~~~~vyg~~~~~~  193 (367)
T PLN02686        128 -------GCAGVFHTSAFVDPAGLS-----GYTKSMAELEAKASENVIEACVRT--ESVRKCVFTSSLLACVWRQNYPHD  193 (367)
T ss_pred             -------hccEEEecCeeecccccc-----cccchhhhhhHHHHHHHHHHHHhc--CCccEEEEeccHHHhcccccCCCC
Confidence                   368999988875432211     111234567777777777775431  11258999999631 110      


Q ss_pred             ----------------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh
Q 042560          191 ----------------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV  254 (287)
Q Consensus       191 ----------------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~  254 (287)
                                      ......|+.+|.+.+.+++.++++++  +++++++|+.+.+|......  ..   ... .....
T Consensus       194 ~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--l~~v~lRp~~vyGp~~~~~~--~~---~~~-~~~~g  265 (367)
T PLN02686        194 LPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKG--LKLATICPALVTGPGFFRRN--ST---ATI-AYLKG  265 (367)
T ss_pred             CCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHhcC--ceEEEEcCCceECCCCCCCC--Ch---hHH-HHhcC
Confidence                            00124699999999999998887754  89999999999998532110  00   000 00000


Q ss_pred             ---hhcCC--CCCCHHHHHHHHHHhhc
Q 042560          255 ---QISLL--PVQPTEECAKAIVNSAC  276 (287)
Q Consensus       255 ---~~~~~--~~~~p~evA~~i~~l~~  276 (287)
                         .....  .+-..+|+|++++.++.
T Consensus       266 ~~~~~g~g~~~~v~V~Dva~A~~~al~  292 (367)
T PLN02686        266 AQEMLADGLLATADVERLAEAHVCVYE  292 (367)
T ss_pred             CCccCCCCCcCeEEHHHHHHHHHHHHh
Confidence               00111  12248999999998886

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.63  E-value=4.6e-14  Score=127.16  Aligned_cols=172  Identities=16%  Similarity=0.088  Sum_probs=124.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHH----hcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAE----LMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+++++++||||+|.||.+++++|.++|++|++++|.............    .....++.++.+|+.|.+.+.++++  
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~--   89 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK--   89 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh--
Confidence            3466889999999999999999999999999999986543222222111    1111257788999999888776664  


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--------  190 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--------  190 (287)
                           .+|++||.|+......     ..++....+++|+.++..+++.+..    .+ .++|++||......        
T Consensus        90 -----~~d~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e  155 (348)
T PRK15181         90 -----NVDYVLHQAALGSVPR-----SLKDPIATNSANIDGFLNMLTAARD----AHVSSFTYAASSSTYGDHPDLPKIE  155 (348)
T ss_pred             -----CCCEEEECccccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEeechHhhCCCCCCCCCC
Confidence                 4899999999754321     1133445788999999998887643    33 58999998643211        


Q ss_pred             ---CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          191 ---PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       191 ---~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                         ......|+.+|.+.+.+++.++.+++  +++..+.|+.+..|.
T Consensus       156 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lR~~~vyGp~  199 (348)
T PRK15181        156 ERIGRPLSPYAVTKYVNELYADVFARSYE--FNAIGLRYFNVFGRR  199 (348)
T ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHHhC--CCEEEEEecceeCcC
Confidence               11245799999999999988877754  788888998888874

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.61  E-value=4.7e-14  Score=127.16  Aligned_cols=210  Identities=18%  Similarity=0.142  Sum_probs=133.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHH---HHHHHHHHhcC------C-CeeEEEeecCCCHHH--HHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQL---REVADQAELMG------S-PFALAIPADVSKVED--CKH  114 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~---~~~~~~~~~~~------~-~~~~~~~~D~~~~~~--v~~  114 (287)
                      +++||||+|+||++++++|+++|  ++|+++.|+.+..   +...+.+....      . .++..+.+|++++.-  -..
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48999999999999999999999  6899999976532   22222222111      0 368899999986521  011


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC---
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP---  191 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~---  191 (287)
                      ...++.   ..+|++||||+.....        ..++...+.|+.+...+++.+...   +..+++++||.....+.   
T Consensus        81 ~~~~~~---~~~d~vih~a~~~~~~--------~~~~~~~~~nv~g~~~ll~~a~~~---~~~~~v~iSS~~v~~~~~~~  146 (367)
T TIGR01746        81 EWERLA---ENVDTIVHNGALVNWV--------YPYSELRAANVLGTREVLRLAASG---RAKPLHYVSTISVLAAIDLS  146 (367)
T ss_pred             HHHHHH---hhCCEEEeCCcEeccC--------CcHHHHhhhhhHHHHHHHHHHhhC---CCceEEEEccccccCCcCCC
Confidence            112222   4689999999975321        234556778998888887776431   22469999998654321   


Q ss_pred             -------------CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh----
Q 042560          192 -------------PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV----  254 (287)
Q Consensus       192 -------------~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~----  254 (287)
                                   .....|+.+|.+.+.+++.++..   .++++.+.||.+.++.....+...+    ....+.+.    
T Consensus       147 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---g~~~~i~Rpg~v~G~~~~g~~~~~~----~~~~~~~~~~~~  219 (367)
T TIGR01746       147 TVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASDR---GLPVTIVRPGRILGNSYTGAINSSD----ILWRMVKGCLAL  219 (367)
T ss_pred             CccccccccccccccCCChHHHHHHHHHHHHHHHhc---CCCEEEECCCceeecCCCCCCCchh----HHHHHHHHHHHh
Confidence                         11346999999999988876543   3889999999998863222111110    00111110    


Q ss_pred             -hhcC-----CCCCCHHHHHHHHHHhhccCC
Q 042560          255 -QISL-----LPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       255 -~~~~-----~~~~~p~evA~~i~~l~~~~~  279 (287)
                       ..+.     ..+...+++|++++.++.+..
T Consensus       220 ~~~p~~~~~~~~~~~vddva~ai~~~~~~~~  250 (367)
T TIGR01746       220 GAYPDSPELTEDLTPVDYVARAIVALSSQPA  250 (367)
T ss_pred             CCCCCCCccccCcccHHHHHHHHHHHHhCCC
Confidence             1111     113458999999999987654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PLN02427 UDP-apiose/xylose synthase

Probab=99.61  E-value=8.5e-14  Score=127.16  Aligned_cols=172  Identities=14%  Similarity=0.146  Sum_probs=121.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++.++++||||+|.||.+++++|.++ |++|++++|+.++.+............++.++.+|++|.+.++++++    
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~----   85 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK----   85 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh----
Confidence            3455678999999999999999999998 58999999876654432211100011258899999999988877664    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP----------  191 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~----------  191 (287)
                         .+|++||.|+........     +...+.+..|+.+...+++++..    .+.++|++||.... +.          
T Consensus        86 ---~~d~ViHlAa~~~~~~~~-----~~~~~~~~~n~~gt~~ll~aa~~----~~~r~v~~SS~~vY-g~~~~~~~~e~~  152 (386)
T PLN02427         86 ---MADLTINLAAICTPADYN-----TRPLDTIYSNFIDALPVVKYCSE----NNKRLIHFSTCEVY-GKTIGSFLPKDH  152 (386)
T ss_pred             ---cCCEEEEcccccChhhhh-----hChHHHHHHHHHHHHHHHHHHHh----cCCEEEEEeeeeee-CCCcCCCCCccc
Confidence               479999999975432111     12223456788888887777632    23589999986321 10          


Q ss_pred             C------------------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          192 P------------------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       192 ~------------------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      |                        ....|+.+|.+.+.+++.++..++  +.+..+.|+.+..+.
T Consensus       153 p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilR~~~vyGp~  216 (386)
T PLN02427        153 PLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENG--LEFTIVRPFNWIGPR  216 (386)
T ss_pred             ccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcC--CceEEecccceeCCC
Confidence            0                        123699999999999987766544  788889999988875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.59  E-value=4e-14  Score=125.98  Aligned_cols=160  Identities=17%  Similarity=0.127  Sum_probs=121.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||+++++.|+++|++|++++|+.+.....    .   ...+..+.+|++|.++++++++       .+|
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~---~~~~~~~~~D~~~~~~l~~~~~-------~~d   66 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL----E---GLDVEIVEGDLRDPASLRKAVA-------GCR   66 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc----c---cCCceEEEeeCCCHHHHHHHHh-------CCC
Confidence            3689999999999999999999999999999986653221    1   1247789999999998877764       579


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC---------------
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP---------------  192 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~---------------  192 (287)
                      ++||+++....       ..+.+.+.++.|+.++..+++.+..   .+.+++|++||.....+.+               
T Consensus        67 ~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~  136 (328)
T TIGR03466        67 ALFHVAADYRL-------WAPDPEEMYAANVEGTRNLLRAALE---AGVERVVYTSSVATLGVRGDGTPADETTPSSLDD  136 (328)
T ss_pred             EEEEeceeccc-------CCCCHHHHHHHHHHHHHHHHHHHHH---hCCCeEEEEechhhcCcCCCCCCcCccCCCCccc
Confidence            99999975321       1134566788999998888887653   2236999999975432110               


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      ....|+.+|.+.+.+++.++.+++  +++..+.|+.+..+.
T Consensus       137 ~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~ilR~~~~~G~~  175 (328)
T TIGR03466       137 MIGHYKRSKFLAEQAALEMAAEKG--LPVVIVNPSTPIGPR  175 (328)
T ss_pred             ccChHHHHHHHHHHHHHHHHHhcC--CCEEEEeCCccCCCC
Confidence            134799999999999999887654  778888998887654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.58  E-value=4.8e-14  Score=123.10  Aligned_cols=164  Identities=17%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             EEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           51 LITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        51 lVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      |||||+|.+|.+++++|.++|  ++|.+.+++......  ......  ....++.+|++|.+++.++++       +.|+
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~~--~~~~~~~~Di~d~~~l~~a~~-------g~d~   69 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQKS--GVKEYIQGDITDPESLEEALE-------GVDV   69 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhcc--cceeEEEeccccHHHHHHHhc-------CCce
Confidence            699999999999999999999  688888886654221  111111  123489999999999988875       6799


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---C--------------
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---P--------------  191 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---~--------------  191 (287)
                      +||.|+......      ....++++++|+.|+-++++++...   +-.++|++||.....+   .              
T Consensus        70 V~H~Aa~~~~~~------~~~~~~~~~vNV~GT~nvl~aa~~~---~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~  140 (280)
T PF01073_consen   70 VFHTAAPVPPWG------DYPPEEYYKVNVDGTRNVLEAARKA---GVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPS  140 (280)
T ss_pred             EEEeCccccccC------cccHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEcCcceeEeccCCCCcccCCcCCcccc
Confidence            999999765432      1445678999999999999887542   2369999999876543   0              


Q ss_pred             CCChhhhhhHHHHHHHHHHHHH-HhC--CCeEEEEEeCCcccCCCc
Q 042560          192 PRMSFYNASKAAKIALYETLRV-EFG--GDIGITIVTPGLIESEIT  234 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~-e~~--~~i~v~~i~PG~v~t~~~  234 (287)
                      .....|+.||+..|.++..... ++.  +.++..+|+|..|..|--
T Consensus       141 ~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d  186 (280)
T PF01073_consen  141 SPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGD  186 (280)
T ss_pred             cccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCccc
Confidence            1234799999999999988765 222  238888999999988753

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.57  E-value=1.3e-13  Score=116.96  Aligned_cols=203  Identities=19%  Similarity=0.223  Sum_probs=142.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++||||+|.||.+++++|.++|..|+.+.|+...........      ++.++.+|+.|.+.++++++..     .+|.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~------~~~~~~~dl~~~~~~~~~~~~~-----~~d~v   69 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKL------NVEFVIGDLTDKEQLEKLLEKA-----NIDVV   69 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHT------TEEEEESETTSHHHHHHHHHHH-----TESEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccc------eEEEEEeecccccccccccccc-----CceEE
Confidence            689999999999999999999999888888766543222211      5889999999999999998765     79999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC------------CChhh
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP------------RMSFY  197 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~------------~~~~Y  197 (287)
                      ||.|+.....     ...+.....++.|+.+...+++.+...   +..++|++||... ++.+            ....|
T Consensus        70 i~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~i~~sS~~~-y~~~~~~~~~e~~~~~~~~~Y  140 (236)
T PF01370_consen   70 IHLAAFSSNP-----ESFEDPEEIIEANVQGTRNLLEAAREA---GVKRFIFLSSASV-YGDPDGEPIDEDSPINPLSPY  140 (236)
T ss_dssp             EEEBSSSSHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHH---TTSEEEEEEEGGG-GTSSSSSSBETTSGCCHSSHH
T ss_pred             EEeecccccc-----ccccccccccccccccccccccccccc---ccccccccccccc-ccccccccccccccccccccc
Confidence            9999975311     111344566777777766666665432   2259999999532 2211            24569


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---C---------CHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---Q---------PTE  265 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~p~  265 (287)
                      +.+|...+.+.+.+..+.+  +++..+.|+.+..+...     ..........+........+.   +         ..+
T Consensus       141 ~~~K~~~e~~~~~~~~~~~--~~~~~~R~~~vyG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  213 (236)
T PF01370_consen  141 GASKRAAEELLRDYAKKYG--LRVTILRPPNVYGPGNP-----NNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVD  213 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SEEEEEEESEEESTTSS-----SSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHH
T ss_pred             ccccccccccccccccccc--ccccccccccccccccc-----ccccccccchhhHHhhcCCcccccCCCCCccceEEHH
Confidence            9999999999999988875  78889999999888710     011111223333333322211   1         299


Q ss_pred             HHHHHHHHhhccCC
Q 042560          266 ECAKAIVNSACRGD  279 (287)
Q Consensus       266 evA~~i~~l~~~~~  279 (287)
                      |+|++++.+++.+.
T Consensus       214 D~a~~~~~~~~~~~  227 (236)
T PF01370_consen  214 DLAEAIVAALENPK  227 (236)
T ss_dssp             HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999998765

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.56  E-value=4.8e-13  Score=120.48  Aligned_cols=207  Identities=14%  Similarity=0.128  Sum_probs=132.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC-CHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVS-KVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++||||+|.||.+++++|.++ |++|+.++|+.......    .  +...+.++.+|++ +.+.+.++++       +
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~----~--~~~~~~~~~~Dl~~~~~~~~~~~~-------~   68 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL----V--NHPRMHFFEGDITINKEWIEYHVK-------K   68 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh----c--cCCCeEEEeCCCCCCHHHHHHHHc-------C
Confidence            36999999999999999999986 69999999876543221    1  1124788899998 6665554432       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC--------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP--------------  191 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~--------------  191 (287)
                      +|++||.|+.......     .++....+++|+.+...+++++..    .+.++|++||.....+.              
T Consensus        69 ~d~ViH~aa~~~~~~~-----~~~p~~~~~~n~~~~~~ll~aa~~----~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~  139 (347)
T PRK11908         69 CDVILPLVAIATPATY-----VKQPLRVFELDFEANLPIVRSAVK----YGKHLVFPSTSEVYGMCPDEEFDPEASPLVY  139 (347)
T ss_pred             CCEEEECcccCChHHh-----hcCcHHHHHHHHHHHHHHHHHHHh----cCCeEEEEecceeeccCCCcCcCcccccccc
Confidence            8999999997543211     134456778899998888777643    23589999986322100              


Q ss_pred             ----CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc----------
Q 042560          192 ----PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS----------  257 (287)
Q Consensus       192 ----~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----------  257 (287)
                          +....|+.+|.+.+.+.+.++.+++  +.+..+.|+.+..+..................+......          
T Consensus       140 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~--~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g  217 (347)
T PRK11908        140 GPINKPRWIYACSKQLMDRVIWAYGMEEG--LNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGG  217 (347)
T ss_pred             CcCCCccchHHHHHHHHHHHHHHHHHHcC--CCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCC
Confidence                1123699999999999999887655  556667777766654322111110000001111111111          


Q ss_pred             --CCCCCCHHHHHHHHHHhhccC
Q 042560          258 --LLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       258 --~~~~~~p~evA~~i~~l~~~~  278 (287)
                        ...+...+|+|++++.++..+
T Consensus       218 ~~~r~~i~v~D~a~a~~~~~~~~  240 (347)
T PRK11908        218 SQKRAFTDIDDGIDALMKIIENK  240 (347)
T ss_pred             ceeeccccHHHHHHHHHHHHhCc
Confidence              112335899999999988754

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=2e-13  Score=116.28  Aligned_cols=148  Identities=18%  Similarity=0.159  Sum_probs=116.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      .++|||||.|-||.+++.+|++.|++|++++.-.....+.....+      +.+++.|+.|.+.+++++++-     ++|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~------~~f~~gDi~D~~~L~~vf~~~-----~id   69 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ------FKFYEGDLLDRALLTAVFEEN-----KID   69 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhcc------CceEEeccccHHHHHHHHHhc-----CCC
Confidence            368999999999999999999999999999986554444333221      578999999999998888763     899


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCC------------CC
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPP------------RM  194 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~------------~~  194 (287)
                      .+||-||....+     .+.+.+.+.++.|+.++..+++++.    +.+ ..+| +||.++.++.|            ..
T Consensus        70 aViHFAa~~~Vg-----ESv~~Pl~Yy~NNv~gTl~Ll~am~----~~gv~~~v-FSStAavYG~p~~~PI~E~~~~~p~  139 (329)
T COG1087          70 AVVHFAASISVG-----ESVQNPLKYYDNNVVGTLNLIEAML----QTGVKKFI-FSSTAAVYGEPTTSPISETSPLAPI  139 (329)
T ss_pred             EEEECccccccc-----hhhhCHHHHHhhchHhHHHHHHHHH----HhCCCEEE-EecchhhcCCCCCcccCCCCCCCCC
Confidence            999999986554     2457778899999999998888853    334 3444 55566665543            34


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhC
Q 042560          195 SFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~  216 (287)
                      ..|+.||-..+.+.+.+++.++
T Consensus       140 NPYG~sKlm~E~iL~d~~~a~~  161 (329)
T COG1087         140 NPYGRSKLMSEEILRDAAKANP  161 (329)
T ss_pred             CcchhHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999987

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.53  E-value=8e-13  Score=128.58  Aligned_cols=164  Identities=16%  Similarity=0.179  Sum_probs=119.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHH-HHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVED-CKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-v~~~~~~~~~~~  123 (287)
                      ++++++||||+|.||.+++++|.++ |++|+.++|+.......    .  ...++.++.+|++|.++ +++++       
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~----~--~~~~~~~~~gDl~d~~~~l~~~l-------  380 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF----L--GHPRFHFVEGDISIHSEWIEYHI-------  380 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh----c--CCCceEEEeccccCcHHHHHHHh-------
Confidence            6789999999999999999999986 79999999976543221    1  11247888999998654 33333       


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----C--------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----P--------  190 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----~--------  190 (287)
                      .++|++||.|+.......     .+.....+++|+.+...+++++...    +.++|++||.....     +        
T Consensus       381 ~~~D~ViHlAa~~~~~~~-----~~~~~~~~~~Nv~~t~~ll~a~~~~----~~~~V~~SS~~vyg~~~~~~~~E~~~~~  451 (660)
T PRK08125        381 KKCDVVLPLVAIATPIEY-----TRNPLRVFELDFEENLKIIRYCVKY----NKRIIFPSTSEVYGMCTDKYFDEDTSNL  451 (660)
T ss_pred             cCCCEEEECccccCchhh-----ccCHHHHHHhhHHHHHHHHHHHHhc----CCeEEEEcchhhcCCCCCCCcCcccccc
Confidence            258999999997653211     1233457789999999888887542    35899999963221     0        


Q ss_pred             --CC---CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          191 --PP---RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       191 --~~---~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                        .|   ....|+.+|.+.+.+++.++++++  +++..+.|+.+..|.
T Consensus       452 ~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g--~~~~ilR~~~vyGp~  497 (660)
T PRK08125        452 IVGPINKQRWIYSVSKQLLDRVIWAYGEKEG--LRFTLFRPFNWMGPR  497 (660)
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHHHhcC--CceEEEEEceeeCCC
Confidence              01   123699999999999999887765  677888888887764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.50  E-value=2.5e-12  Score=117.51  Aligned_cols=163  Identities=18%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH--HHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV--ADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++++||||+|+||++++++|.++|++|++++|+..+.+..  .+...... ..+.++.+|++|.+++.++++..   
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~~l~~~~~~~---  133 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKEL-PGAEVVFGDVTDADSLRKVLFSE---  133 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhc-CCceEEEeeCCCHHHHHHHHHHh---
Confidence            3577999999999999999999999999999999987654311  11111111 24788999999999998887643   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      .+++|++|||+|.....          ....+++|+.+...+++++    ++.+ +++|++||.....+   ...|..+|
T Consensus       134 ~~~~D~Vi~~aa~~~~~----------~~~~~~vn~~~~~~ll~aa----~~~gv~r~V~iSS~~v~~p---~~~~~~sK  196 (390)
T PLN02657        134 GDPVDVVVSCLASRTGG----------VKDSWKIDYQATKNSLDAG----REVGAKHFVLLSAICVQKP---LLEFQRAK  196 (390)
T ss_pred             CCCCcEEEECCccCCCC----------CccchhhHHHHHHHHHHHH----HHcCCCEEEEEeeccccCc---chHHHHHH
Confidence            12699999999852211          1233566777776666665    3333 68999999875433   44688899


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      ...+...+.    ....++...+.|+.+..+
T Consensus       197 ~~~E~~l~~----~~~gl~~tIlRp~~~~~~  223 (390)
T PLN02657        197 LKFEAELQA----LDSDFTYSIVRPTAFFKS  223 (390)
T ss_pred             HHHHHHHHh----ccCCCCEEEEccHHHhcc
Confidence            888876654    122388888999876643

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=99.49  E-value=6.5e-12  Score=97.54  Aligned_cols=213  Identities=13%  Similarity=0.102  Sum_probs=149.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--  123 (287)
                      ..++++|-|+-|.+|.+|+..|-.+++-|.-++..+.+-.           +.-..+..|-+=.|+-+.+.+++.+..  
T Consensus         2 sagrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-----------d~sI~V~~~~swtEQe~~v~~~vg~sL~g   70 (236)
T KOG4022|consen    2 SAGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-----------DSSILVDGNKSWTEQEQSVLEQVGSSLQG   70 (236)
T ss_pred             CCceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-----------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence            4567999999999999999999999998887776544211           123344455554566677777777654  


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      .++|.+++-||...-+.-....-...-+-++.-.+++.....+.....++. +|-+-..+.-.+..+.|+...|+++|+|
T Consensus        71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~-GGLL~LtGAkaAl~gTPgMIGYGMAKaA  149 (236)
T KOG4022|consen   71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP-GGLLQLTGAKAALGGTPGMIGYGMAKAA  149 (236)
T ss_pred             cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC-CceeeecccccccCCCCcccchhHHHHH
Confidence            479999999987654432221112333446666666666666666666654 4566666667778899999999999999


Q ss_pred             HHHHHHHHHHHhC---CCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          204 KIALYETLRVEFG---GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       204 l~~~~~~la~e~~---~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +.+++++|+.+-.   +.-.+.+|.|=..||||.++.+...+...+.+               -+++++..+....+.++
T Consensus       150 VHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~ADfssWTP---------------L~fi~e~flkWtt~~~R  214 (236)
T KOG4022|consen  150 VHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPNADFSSWTP---------------LSFISEHFLKWTTETSR  214 (236)
T ss_pred             HHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCCCcccCccc---------------HHHHHHHHHHHhccCCC
Confidence            9999999998743   33667788999999999999776554333322               47777777777776666


Q ss_pred             cccCC
Q 042560          281 YLTQP  285 (287)
Q Consensus       281 ~itG~  285 (287)
                      --+|+
T Consensus       215 PssGs  219 (236)
T KOG4022|consen  215 PSSGS  219 (236)
T ss_pred             CCCCc
Confidence            55543

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.47  E-value=1.7e-12  Score=114.86  Aligned_cols=160  Identities=15%  Similarity=0.130  Sum_probs=108.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH--hcCCcc
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME--HFGRLD  127 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~~id  127 (287)
                      ++||||+|.||++++++|.++|++++++.|+....... ..          ...+|++|..+.+.+++.+.+  .++++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~d   70 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN----------LVDLDIADYMDKEDFLAQIMAGDDFGDIE   70 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh----------hhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence            79999999999999999999999777665554321111 01          123566666666666555443  245799


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSF  196 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~  196 (287)
                      ++||+||.....   .    .+....++.|+.++..+++.+..    .+.++|++||......           ......
T Consensus        71 ~Vih~A~~~~~~---~----~~~~~~~~~n~~~t~~ll~~~~~----~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~  139 (308)
T PRK11150         71 AIFHEGACSSTT---E----WDGKYMMDNNYQYSKELLHYCLE----REIPFLYASSAATYGGRTDDFIEEREYEKPLNV  139 (308)
T ss_pred             EEEECceecCCc---C----CChHHHHHHHHHHHHHHHHHHHH----cCCcEEEEcchHHhCcCCCCCCccCCCCCCCCH
Confidence            999999864422   1    11234678888888888777643    3447999988742211           112457


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      |+.+|.+.+.+++.++.+.+  +.+..+.|+.+..+-
T Consensus       140 Y~~sK~~~E~~~~~~~~~~~--~~~~~lR~~~vyG~~  174 (308)
T PRK11150        140 YGYSKFLFDEYVRQILPEAN--SQICGFRYFNVYGPR  174 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHcC--CCEEEEeeeeecCCC
Confidence            99999999999988876643  677788888777653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.45  E-value=2.7e-12  Score=116.60  Aligned_cols=165  Identities=18%  Similarity=0.083  Sum_probs=117.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+|.||.++++.|.++|++|++++|.......      .. .....++.+|++|.+.+.++++       +
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~------~~-~~~~~~~~~Dl~d~~~~~~~~~-------~   85 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS------ED-MFCHEFHLVDLRVMENCLKVTK-------G   85 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc------cc-cccceEEECCCCCHHHHHHHHh-------C
Confidence            67899999999999999999999999999999986432110      00 0124567899999887666542       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC----------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL----------------  189 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~----------------  189 (287)
                      +|++||.|+.........    ......+..|+.++..+++++...   +-.++|++||.....                
T Consensus        86 ~D~Vih~Aa~~~~~~~~~----~~~~~~~~~N~~~t~nll~aa~~~---~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~  158 (370)
T PLN02695         86 VDHVFNLAADMGGMGFIQ----SNHSVIMYNNTMISFNMLEAARIN---GVKRFFYASSACIYPEFKQLETNVSLKESDA  158 (370)
T ss_pred             CCEEEEcccccCCccccc----cCchhhHHHHHHHHHHHHHHHHHh---CCCEEEEeCchhhcCCccccCcCCCcCcccC
Confidence            799999998654221111    122345667888888887776321   225899999863110                


Q ss_pred             -CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 -PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 -~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                       +......|+.+|.+.+.+++.++..++  +++..+.|+.+..|.
T Consensus       159 ~p~~p~s~Yg~sK~~~E~~~~~~~~~~g--~~~~ilR~~~vyGp~  201 (370)
T PLN02695        159 WPAEPQDAYGLEKLATEELCKHYTKDFG--IECRIGRFHNIYGPF  201 (370)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEEECCccCCC
Confidence             223456899999999999999877765  778888998888774

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.45  E-value=6.4e-12  Score=109.93  Aligned_cols=178  Identities=17%  Similarity=0.158  Sum_probs=122.9

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++||||+|.||.+++++|.++|++|++++|+                      .+|+.+.++++++++.     .++|++
T Consensus         2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------------~~d~~~~~~~~~~~~~-----~~~d~v   54 (287)
T TIGR01214         2 ILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTDPEALERLLRA-----IRPDAV   54 (287)
T ss_pred             EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------------ccCCCCHHHHHHHHHh-----CCCCEE
Confidence            7999999999999999999999999999885                      3799999988888754     268999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhhh
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFYN  198 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y~  198 (287)
                      ||++|......     ........+++|+.+...+++.+..    .+.++|++||.....+           ......|+
T Consensus        55 i~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~  125 (287)
T TIGR01214        55 VNTAAYTDVDG-----AESDPEKAFAVNALAPQNLARAAAR----HGARLVHISTDYVFDGEGKRPYREDDATNPLNVYG  125 (287)
T ss_pred             EECCccccccc-----cccCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEeeeeeecCCCCCCCCCCCCCCCcchhh
Confidence            99999753221     1123455778899888888887643    3358999998642211           11245799


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----------CCCCCHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----------LPVQPTEECA  268 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~evA  268 (287)
                      .+|.+.+.+++.+    .  .++..+.|+.+..+.....+         ...+.+.....          ......+|+|
T Consensus       126 ~~K~~~E~~~~~~----~--~~~~ilR~~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva  190 (287)
T TIGR01214       126 QSKLAGEQAIRAA----G--PNALIVRTSWLYGGGGGRNF---------VRTMLRLAGRGEELRVVDDQIGSPTYAKDLA  190 (287)
T ss_pred             HHHHHHHHHHHHh----C--CCeEEEEeeecccCCCCCCH---------HHHHHHHhhcCCCceEecCCCcCCcCHHHHH
Confidence            9999999888765    2  35678888888776521100         01111111111          1112379999


Q ss_pred             HHHHHhhccC
Q 042560          269 KAIVNSACRG  278 (287)
Q Consensus       269 ~~i~~l~~~~  278 (287)
                      ++++.++..+
T Consensus       191 ~a~~~~~~~~  200 (287)
T TIGR01214       191 RVIAALLQRL  200 (287)
T ss_pred             HHHHHHHhhc
Confidence            9999998753

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.44  E-value=5e-12  Score=107.44  Aligned_cols=163  Identities=22%  Similarity=0.180  Sum_probs=119.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC--eEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA--RLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++|||||.|.||.++++.+.++..  +|+.++. +-..-.+....+..  ..+..++++|+.|.+.+.+++++-     
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv~~DI~D~~~v~~~~~~~-----   73 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED--SPRYRFVQGDICDRELVDRLFKEY-----   73 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhc--CCCceEEeccccCHHHHHHHHHhc-----
Confidence            4689999999999999999999865  4677665 11111112222322  236899999999999998888753     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC--C-----------CCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA--G-----------WLPP  191 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~--~-----------~~~~  191 (287)
                      .+|+++|-|+-.+...     +.+....-+++|+.|++.+++++.....+  -+++.+|.-.  |           ..|.
T Consensus        74 ~~D~VvhfAAESHVDR-----SI~~P~~Fi~TNv~GT~~LLEaar~~~~~--frf~HISTDEVYG~l~~~~~~FtE~tp~  146 (340)
T COG1088          74 QPDAVVHFAAESHVDR-----SIDGPAPFIQTNVVGTYTLLEAARKYWGK--FRFHHISTDEVYGDLGLDDDAFTETTPY  146 (340)
T ss_pred             CCCeEEEechhccccc-----cccChhhhhhcchHHHHHHHHHHHHhccc--ceEEEeccccccccccCCCCCcccCCCC
Confidence            7899999998776442     44556667899999999999998776532  3677777532  1           1244


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTP  226 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~P  226 (287)
                      .+.+.|+||||+.+++++++.+-|+  +.+....+
T Consensus       147 ~PsSPYSASKAasD~lVray~~TYg--lp~~Itrc  179 (340)
T COG1088         147 NPSSPYSASKAASDLLVRAYVRTYG--LPATITRC  179 (340)
T ss_pred             CCCCCcchhhhhHHHHHHHHHHHcC--CceEEecC
Confidence            5678899999999999999999998  44444433

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.2e-11  Score=109.32  Aligned_cols=201  Identities=16%  Similarity=0.118  Sum_probs=135.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc-cE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL-DH  128 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i-dv  128 (287)
                      ++||||+|.||.+++++|.++|++|+.++|.........        ..+..+.+|++|.+...+..+       .. |.
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~-------~~~d~   67 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--------SGVEFVVLDLTDRDLVDELAK-------GVPDA   67 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc--------cccceeeecccchHHHHHHHh-------cCCCE
Confidence            899999999999999999999999999999777644332        246778899998855554443       23 99


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----------CCCh--
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-----------PRMS--  195 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-----------~~~~--  195 (287)
                      +||+|+.........    ......+.+|+.+...+++++..   ....++|+.||.....+.           +..+  
T Consensus        68 vih~aa~~~~~~~~~----~~~~~~~~~nv~gt~~ll~aa~~---~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~  140 (314)
T COG0451          68 VIHLAAQSSVPDSNA----SDPAEFLDVNVDGTLNLLEAARA---AGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLN  140 (314)
T ss_pred             EEEccccCchhhhhh----hCHHHHHHHHHHHHHHHHHHHHH---cCCCeEEEeCCCceECCCCCCCCcccccCCCCCCC
Confidence            999999865432111    12345788999999998888755   234688996664433321           1111  


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC-------------CCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL-------------PVQ  262 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  262 (287)
                      .|+.+|.+.+.+++......+  +.+..+.|+.+..+........     ..............             .+.
T Consensus       141 ~Yg~sK~~~E~~~~~~~~~~~--~~~~ilR~~~vyGp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  213 (314)
T COG0451         141 PYGVSKLAAEQLLRAYARLYG--LPVVILRPFNVYGPGDKPDLSS-----GVVSAFIRQLLKGEPIIVIGGDGSQTRDFV  213 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--CCeEEEeeeeeeCCCCCCCCCc-----CcHHHHHHHHHhCCCcceEeCCCceeEeeE
Confidence            499999999999999998333  7888888887776654432100     00111111111111             122


Q ss_pred             CHHHHHHHHHHhhccCC
Q 042560          263 PTEECAKAIVNSACRGD  279 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~~  279 (287)
                      ..+|+++++..+++...
T Consensus       214 ~v~D~a~~~~~~~~~~~  230 (314)
T COG0451         214 YVDDVADALLLALENPD  230 (314)
T ss_pred             eHHHHHHHHHHHHhCCC
Confidence            38999999999998654

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.43  E-value=5.8e-12  Score=122.96  Aligned_cols=172  Identities=16%  Similarity=0.146  Sum_probs=121.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARR--RARLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .++++++||||+|.||++++++|.++  |++|++++|..  +..+....   .....++.++.+|++|.+.+.+++..  
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~---~~~~~~v~~~~~Dl~d~~~~~~~~~~--   78 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNP---SKSSPNFKFVKGDIASADLVNYLLIT--   78 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhh---cccCCCeEEEECCCCChHHHHHHHhh--
Confidence            46789999999999999999999998  67899888753  22221111   11123588899999998877665432  


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------  189 (287)
                         .++|++||+|+......     ..+.....+++|+.++..+++++...  ....++|++||.....           
T Consensus        79 ---~~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~a~~~~--~~vkr~I~~SS~~vyg~~~~~~~~~~~  148 (668)
T PLN02260         79 ---EGIDTIMHFAAQTHVDN-----SFGNSFEFTKNNIYGTHVLLEACKVT--GQIRRFIHVSTDEVYGETDEDADVGNH  148 (668)
T ss_pred             ---cCCCEEEECCCccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHhc--CCCcEEEEEcchHHhCCCccccccCcc
Confidence               37999999999754321     11233456788998888887776331  1125899999964211           


Q ss_pred             ---CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 ---PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 ---~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                         +......|+.+|.+.+.+++.+..+++  +.+..+.|+.+..+-
T Consensus       149 E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~~--l~~vilR~~~VyGp~  193 (668)
T PLN02260        149 EASQLLPTNPYSATKAGAEMLVMAYGRSYG--LPVITTRGNNVYGPN  193 (668)
T ss_pred             ccCCCCCCCCcHHHHHHHHHHHHHHHHHcC--CCEEEECcccccCcC
Confidence               111245799999999999998887765  677888898887764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.42  E-value=1.2e-11  Score=100.95  Aligned_cols=173  Identities=24%  Similarity=0.292  Sum_probs=121.4

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++|+||+|.+|+.++++|.++|++|.++.|++++.++         ..++.++.+|+.|.+++.+.++       +.|++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---------~~~~~~~~~d~~d~~~~~~al~-------~~d~v   64 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---------SPGVEIIQGDLFDPDSVKAALK-------GADAV   64 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---------CTTEEEEESCTTCHHHHHHHHT-------TSSEE
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---------ccccccceeeehhhhhhhhhhh-------hcchh
Confidence            6899999999999999999999999999999997766         2369999999999988877764       68999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCC---------hhhhh
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRM---------SFYNA  199 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~---------~~Y~a  199 (287)
                      |+++|....                +      ...++.++..+++.+ .++|++||.......+..         ..|..
T Consensus        65 i~~~~~~~~----------------~------~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  122 (183)
T PF13460_consen   65 IHAAGPPPK----------------D------VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYAR  122 (183)
T ss_dssp             EECCHSTTT----------------H------HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHH
T ss_pred             hhhhhhhcc----------------c------ccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHH
Confidence            999975321                0      455566666666555 699999988766543331         34666


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      .|...+.+.+    +  ..++...++|+++..+.........       +    ......+.-+.+|+|+.++.++.+
T Consensus       123 ~~~~~e~~~~----~--~~~~~~ivrp~~~~~~~~~~~~~~~-------~----~~~~~~~~i~~~DvA~~~~~~l~~  183 (183)
T PF13460_consen  123 DKREAEEALR----E--SGLNWTIVRPGWIYGNPSRSYRLIK-------E----GGPQGVNFISREDVAKAIVEALEN  183 (183)
T ss_dssp             HHHHHHHHHH----H--STSEEEEEEESEEEBTTSSSEEEES-------S----TSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHH----h--cCCCEEEEECcEeEeCCCcceeEEe-------c----cCCCCcCcCCHHHHHHHHHHHhCC
Confidence            6655554431    2  1388899999999887533111000       0    000111233589999999998754

...

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.41  E-value=4e-12  Score=109.40  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=119.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.++||||.|-||.+++.+|.++|+.|+++|.=.....+.....+..-  +.++.+++.|+.|.+.+++++++.     
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~-----   76 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEV-----   76 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhc-----
Confidence            5789999999999999999999999999999863332222222222211  347999999999999999999875     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CCC-
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PPP-  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~~-  192 (287)
                      ++|.++|-|+....+     .+++......+.|+.+.+.+++.+...-   -..+|+.||..-.-           +.. 
T Consensus        77 ~fd~V~Hfa~~~~vg-----eS~~~p~~Y~~nNi~gtlnlLe~~~~~~---~~~~V~sssatvYG~p~~ip~te~~~t~~  148 (343)
T KOG1371|consen   77 KFDAVMHFAALAAVG-----ESMENPLSYYHNNIAGTLNLLEVMKAHN---VKALVFSSSATVYGLPTKVPITEEDPTDQ  148 (343)
T ss_pred             CCceEEeehhhhccc-----hhhhCchhheehhhhhHHHHHHHHHHcC---CceEEEecceeeecCcceeeccCcCCCCC
Confidence            599999999987654     2446667889999999999888864432   25777777754321           112 


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~  216 (287)
                      ....|+.+|.+++...+...+.+.
T Consensus       149 p~~pyg~tK~~iE~i~~d~~~~~~  172 (343)
T KOG1371|consen  149 PTNPYGKTKKAIEEIIHDYNKAYG  172 (343)
T ss_pred             CCCcchhhhHHHHHHHHhhhcccc
Confidence            456799999999999999998876

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.40  E-value=6.5e-12  Score=111.19  Aligned_cols=162  Identities=14%  Similarity=0.076  Sum_probs=110.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++||||+|.||.++++.|.++|+ .|++++|+.... .. .+..      ...+..|+++.+.++.+.+.   ..+++|+
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~~------~~~~~~d~~~~~~~~~~~~~---~~~~~D~   69 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNLA------DLVIADYIDKEDFLDRLEKG---AFGKIEA   69 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhhh------heeeeccCcchhHHHHHHhh---ccCCCCE
Confidence            58999999999999999999998 688887754321 11 1110      12456788877666655442   3457999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||+|+....       ..++....+++|+.+...+++.+..    .+.++|++||......           ......|
T Consensus        70 vvh~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y  138 (314)
T TIGR02197        70 IFHQGACSDT-------TETDGEYMMENNYQYSKRLLDWCAE----KGIPFIYASSAATYGDGEAGFREGRELERPLNVY  138 (314)
T ss_pred             EEECccccCc-------cccchHHHHHHHHHHHHHHHHHHHH----hCCcEEEEccHHhcCCCCCCcccccCcCCCCCHH
Confidence            9999996431       1134456788999888888887643    2458999998643210           1145679


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      +.+|.+.+.+++....+....+.+..+.|+.+..+.
T Consensus       139 ~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~  174 (314)
T TIGR02197       139 GYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPR  174 (314)
T ss_pred             HHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCC
Confidence            999999999998754333223566777777776653

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.39  E-value=9.2e-12  Score=115.41  Aligned_cols=163  Identities=16%  Similarity=0.128  Sum_probs=113.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      -++++++||||+|.||.+++++|.++|++|++++|......+.....  ....++..+..|+.+..     +       .
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~--~~~~~~~~i~~D~~~~~-----l-------~  182 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH--FSNPNFELIRHDVVEPI-----L-------L  182 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh--ccCCceEEEECCccChh-----h-------c
Confidence            35789999999999999999999999999999987543222111111  11234777888886642     1       2


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC---------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL---------------  189 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~---------------  189 (287)
                      ++|++||.|+.......     .++..+.+++|+.++..+++++...    +.++|++||.....               
T Consensus       183 ~~D~ViHlAa~~~~~~~-----~~~p~~~~~~Nv~gt~nLleaa~~~----g~r~V~~SS~~VYg~~~~~p~~E~~~~~~  253 (442)
T PLN02206        183 EVDQIYHLACPASPVHY-----KFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQVETYWGNV  253 (442)
T ss_pred             CCCEEEEeeeecchhhh-----hcCHHHHHHHHHHHHHHHHHHHHHh----CCEEEEECChHHhCCCCCCCCCccccccC
Confidence            58999999987543211     1234567889999999988877432    34899999875321               


Q ss_pred             -CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          190 -PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       190 -~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                       |......|+.+|.+.+.+++.+.+.++  +++..+.|+.+..+
T Consensus       254 ~P~~~~s~Y~~SK~~aE~~~~~y~~~~g--~~~~ilR~~~vyGp  295 (442)
T PLN02206        254 NPIGVRSCYDEGKRTAETLTMDYHRGAN--VEVRIARIFNTYGP  295 (442)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHHHhC--CCeEEEEeccccCC
Confidence             111245799999999999988877665  66666777666654

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.38  E-value=1.3e-11  Score=106.11  Aligned_cols=165  Identities=19%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             EecCCChHHHHHHHHHHHcCC--eEEEEeCChhH---HHHHHHHHHhc---------CCCeeEEEeecCCCHH-HH-HHH
Q 042560           52 ITGASSGIGKHLAYEYARRRA--RLVLVARRERQ---LREVADQAELM---------GSPFALAIPADVSKVE-DC-KHF  115 (287)
Q Consensus        52 VtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~---~~~~~~~~~~~---------~~~~~~~~~~D~~~~~-~v-~~~  115 (287)
                      ||||||.+|..+.++|++++.  +|+++.|..+.   .+...+.+...         ...+++++.+|++++. .+ ++.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999987  89999997643   22222211111         1458999999999863 01 112


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC--CCC---
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG--WLP---  190 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~--~~~---  190 (287)
                      ++++.+   .+|++||+|+.....        ..+++..+.|+.|...+++.+..   .+..+++++||...  ...   
T Consensus        81 ~~~L~~---~v~~IiH~Aa~v~~~--------~~~~~~~~~NV~gt~~ll~la~~---~~~~~~~~iSTa~v~~~~~~~~  146 (249)
T PF07993_consen   81 YQELAE---EVDVIIHCAASVNFN--------APYSELRAVNVDGTRNLLRLAAQ---GKRKRFHYISTAYVAGSRPGTI  146 (249)
T ss_dssp             HHHHHH---H--EEEE--SS-SBS---------S--EEHHHHHHHHHHHHHHHTS---SS---EEEEEEGGGTTS-TTT-
T ss_pred             hhcccc---ccceeeecchhhhhc--------ccchhhhhhHHHHHHHHHHHHHh---ccCcceEEeccccccCCCCCcc
Confidence            222222   589999999976542        34556788999999888887742   12248999998311  111   


Q ss_pred             ---------------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          191 ---------------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       191 ---------------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                                     ......|..||...|.+.+..+.+.+  +.+..+.||.+-.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g--~p~~I~Rp~~i~g~  201 (249)
T PF07993_consen  147 EEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHG--LPVTIYRPGIIVGD  201 (249)
T ss_dssp             -SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH-----EEEEEE-EEE-S
T ss_pred             cccccccccccchhhccCCccHHHHHHHHHHHHHHHHhcCC--ceEEEEecCccccc
Confidence                           01234799999999999999998755  77888999988774

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.34  E-value=1.7e-11  Score=108.17  Aligned_cols=131  Identities=16%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|.||.+++++|.++| +|+.++|...                  .+..|++|.+.+.++++..     ++|+
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~------------------~~~~Dl~d~~~~~~~~~~~-----~~D~   57 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST------------------DYCGDFSNPEGVAETVRKI-----RPDV   57 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc------------------cccCCCCCHHHHHHHHHhc-----CCCE
Confidence            59999999999999999999999 7888887521                  1357999999988877642     5899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----C------CCCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----L------PPPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----~------~~~~~~~Y  197 (287)
                      +||+|+......     ..+..+..+.+|+.++..+++++..    .+.++|++||..-.     .      +......|
T Consensus        58 Vih~Aa~~~~~~-----~~~~~~~~~~~N~~~~~~l~~aa~~----~g~~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Y  128 (299)
T PRK09987         58 IVNAAAHTAVDK-----AESEPEFAQLLNATSVEAIAKAANE----VGAWVVHYSTDYVFPGTGDIPWQETDATAPLNVY  128 (299)
T ss_pred             EEECCccCCcch-----hhcCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEccceEECCCCCCCcCCCCCCCCCCHH
Confidence            999999764321     1123345677899998888887643    23588888885321     1      11234579


Q ss_pred             hhhHHHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLR  212 (287)
Q Consensus       198 ~asKaal~~~~~~la  212 (287)
                      +.+|.+.+.+++...
T Consensus       129 g~sK~~~E~~~~~~~  143 (299)
T PRK09987        129 GETKLAGEKALQEHC  143 (299)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999887653

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.34  E-value=8.2e-11  Score=104.68  Aligned_cols=189  Identities=14%  Similarity=0.050  Sum_probs=119.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|.+|++++++|.++|++|.+++|+.++....    ..   ..+.++.+|++|.+++.++++       ++|+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~---~~v~~v~~Dl~d~~~l~~al~-------g~d~   67 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE---WGAELVYGDLSLPETLPPSFK-------GVTA   67 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh---cCCEEEECCCCCHHHHHHHHC-------CCCE
Confidence            699999999999999999999999999999987653221    11   137889999999988876664       5799


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      +||.++...          .+.....++|+.+...+++++.    +.+ .++|++||..+.. . +...|..+|...+.+
T Consensus        68 Vi~~~~~~~----------~~~~~~~~~~~~~~~~l~~aa~----~~gvkr~I~~Ss~~~~~-~-~~~~~~~~K~~~e~~  131 (317)
T CHL00194         68 IIDASTSRP----------SDLYNAKQIDWDGKLALIEAAK----AAKIKRFIFFSILNAEQ-Y-PYIPLMKLKSDIEQK  131 (317)
T ss_pred             EEECCCCCC----------CCccchhhhhHHHHHHHHHHHH----HcCCCEEEEeccccccc-c-CCChHHHHHHHHHHH
Confidence            999875321          1222345677777776666653    333 5999999864431 1 234588889887766


Q ss_pred             HHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC--cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          208 YETLRVEFGGDIGITIVTPGLIESEITGGKFLN--KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       208 ~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      .+    +.+  +....+.|+.+..++.......  .....+..     ........-..+|+|++++.++.++
T Consensus       132 l~----~~~--l~~tilRp~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~v~Dva~~~~~~l~~~  193 (317)
T CHL00194        132 LK----KSG--IPYTIFRLAGFFQGLISQYAIPILEKQPIWIT-----NESTPISYIDTQDAAKFCLKSLSLP  193 (317)
T ss_pred             HH----HcC--CCeEEEeecHHhhhhhhhhhhhhccCCceEec-----CCCCccCccCHHHHHHHHHHHhcCc
Confidence            53    222  6677788875543322111000  00000000     0000112224699999999888643

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.33  E-value=2e-11  Score=107.70  Aligned_cols=148  Identities=16%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             EEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEEE
Q 042560           51 LITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLV  130 (287)
Q Consensus        51 lVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli  130 (287)
                      +||||+|.||.++++.|.+.|+.|+++.+.                     ..+|++|.++++++++.     .++|++|
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~---------------------~~~Dl~~~~~l~~~~~~-----~~~d~Vi   54 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH---------------------KELDLTRQADVEAFFAK-----EKPTYVI   54 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc---------------------ccCCCCCHHHHHHHHhc-----cCCCEEE
Confidence            699999999999999999999987766432                     13799999888887664     2689999


Q ss_pred             EccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------------C-CCC
Q 042560          131 TNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---------------P-PRM  194 (287)
Q Consensus       131 ~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---------------~-~~~  194 (287)
                      |+|+.......    ..+.....++.|+.++..+++.+...   +-+++|++||..-..+               . |..
T Consensus        55 h~A~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~  127 (306)
T PLN02725         55 LAAAKVGGIHA----NMTYPADFIRENLQIQTNVIDAAYRH---GVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTN  127 (306)
T ss_pred             Eeeeeecccch----hhhCcHHHHHHHhHHHHHHHHHHHHc---CCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCc
Confidence            99997432110    11233456788888888887776432   2268999988642111               0 112


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      ..|+.+|.+.+.+.+.+.++++  +++..+.|+.+..+-
T Consensus       128 ~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~R~~~vyG~~  164 (306)
T PLN02725        128 EWYAIAKIAGIKMCQAYRIQYG--WDAISGMPTNLYGPH  164 (306)
T ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCEEEEEecceeCCC
Confidence            3599999999999988877765  788889999888774

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.33  E-value=3.3e-11  Score=111.51  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=112.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+|.||.+++++|.++|++|++++|......+......  +..++.++..|+.+..     +       .+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~--~~~~~~~~~~Di~~~~-----~-------~~  184 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF--GNPRFELIRHDVVEPI-----L-------LE  184 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc--cCCceEEEECcccccc-----c-------cC
Confidence            35689999999999999999999999999999985432221111111  1224677788886542     1       25


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC----------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL----------------  189 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~----------------  189 (287)
                      +|++||.|+.......    . .+....++.|+.+...+++++...    +.++|++||.....                
T Consensus       185 ~D~ViHlAa~~~~~~~----~-~~p~~~~~~Nv~gT~nLleaa~~~----g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~  255 (436)
T PLN02166        185 VDQIYHLACPASPVHY----K-YNPVKTIKTNVMGTLNMLGLAKRV----GARFLLTSTSEVYGDPLEHPQKETYWGNVN  255 (436)
T ss_pred             CCEEEECceeccchhh----c-cCHHHHHHHHHHHHHHHHHHHHHh----CCEEEEECcHHHhCCCCCCCCCccccccCC
Confidence            8999999987543211    1 234567889999998888876542    34899998864211                


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      |......|+.+|.+.+.+++.+.+.++  +++..+.|+.+..+.
T Consensus       256 p~~p~s~Yg~SK~~aE~~~~~y~~~~~--l~~~ilR~~~vYGp~  297 (436)
T PLN02166        256 PIGERSCYDEGKRTAETLAMDYHRGAG--VEVRIARIFNTYGPR  297 (436)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhC--CCeEEEEEccccCCC
Confidence            111245699999999999998877654  566667776666653

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.28  E-value=3.2e-10  Score=110.57  Aligned_cols=163  Identities=18%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             EEEEecCCChHHHHHHHHHH--HcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHH--HHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYA--RRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDC--KHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~--~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v--~~~~~~~~~~~~  124 (287)
                      +++||||+|.||.+++++|.  +.|++|++++|+... ..........+..++..+.+|++|.+.-  .+..+++    .
T Consensus         2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l----~   76 (657)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL----G   76 (657)
T ss_pred             eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----c
Confidence            69999999999999999999  579999999996543 2222222222223688899999985310  1111222    4


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-------------C
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-------------P  191 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-------------~  191 (287)
                      ++|++||+||.....        .......++|+.+...+++.+...   +..++|++||......             .
T Consensus        77 ~~D~Vih~Aa~~~~~--------~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~  145 (657)
T PRK07201         77 DIDHVVHLAAIYDLT--------ADEEAQRAANVDGTRNVVELAERL---QAATFHHVSSIAVAGDYEGVFREDDFDEGQ  145 (657)
T ss_pred             CCCEEEECceeecCC--------CCHHHHHHHHhHHHHHHHHHHHhc---CCCeEEEEeccccccCccCccccccchhhc
Confidence            789999999964321        223446678888887777765321   2368999998754311             1


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .....|+.+|...+.+.+.   .  ..+++..+.|+.+..+
T Consensus       146 ~~~~~Y~~sK~~~E~~~~~---~--~g~~~~ilRp~~v~G~  181 (657)
T PRK07201        146 GLPTPYHRTKFEAEKLVRE---E--CGLPWRVYRPAVVVGD  181 (657)
T ss_pred             CCCCchHHHHHHHHHHHHH---c--CCCcEEEEcCCeeeec
Confidence            1235699999999988763   1  2378888999998765

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=99.26  E-value=1.8e-10  Score=99.85  Aligned_cols=181  Identities=18%  Similarity=0.197  Sum_probs=142.1

Q ss_pred             CCEEEEecC-CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC-
Q 042560           47 GKVVLITGA-SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG-  124 (287)
Q Consensus        47 ~k~alVtGa-~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~-  124 (287)
                      ..+++|.|. +.-+++.+|..|-++|+-|+++..+.++.+...++-    ...+.....|..+..++...+.+..+... 
T Consensus         3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~----~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~   78 (299)
T PF08643_consen    3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED----RPDIRPLWLDDSDPSSIHASLSRFASLLSR   78 (299)
T ss_pred             eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc----CCCCCCcccCCCCCcchHHHHHHHHHHhcC
Confidence            357888885 789999999999999999999999888755443332    23578888888777777777766665443 


Q ss_pred             -------------CccEEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc---CCCEEEE-EcCCC
Q 042560          125 -------------RLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ---TKGKIIV-VASAA  186 (287)
Q Consensus       125 -------------~idvli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~---~~g~iv~-isS~~  186 (287)
                                   ++..+|.-..... .++.+. .+.+.|.+.++.|+..++..++.++|+++.   ++.++|. .-|..
T Consensus        79 p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~-i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~  157 (299)
T PF08643_consen   79 PHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIET-ISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSIS  157 (299)
T ss_pred             CCCCCCCCCCceeEEEEEEEecCCCCCCCCccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchh
Confidence                         2445555444443 344444 455889999999999999999999999987   5566555 55777


Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCC
Q 042560          187 GWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESE  232 (287)
Q Consensus       187 ~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~  232 (287)
                      +....|..+.-....++++++++.|++|+.+. |.|..+..|.++-.
T Consensus       158 ssl~~PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~i~  204 (299)
T PF08643_consen  158 SSLNPPFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLDIG  204 (299)
T ss_pred             hccCCCccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeeccc
Confidence            88888999999999999999999999999977 99999999988876

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>PLN02996 fatty acyl-CoA reductase

Probab=99.26  E-value=2.7e-10  Score=107.05  Aligned_cols=169  Identities=20%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhH---HHHHHHHH---------Hh-c-------CCCeeEE
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQ---LREVADQA---------EL-M-------GSPFALA  101 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~---~~~~~~~~---------~~-~-------~~~~~~~  101 (287)
                      ++||+++||||||.+|..++++|++.+.   +|+++.|....   .+....++         .. .       ...++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            5899999999999999999999998653   67888886431   11111111         01 0       0146899


Q ss_pred             EeecCCC-------HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc
Q 042560          102 IPADVSK-------VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ  174 (287)
Q Consensus       102 ~~~D~~~-------~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~  174 (287)
                      +.+|+++       .+..+++++       .+|++||+|+.....        +..+..+++|+.++..+++.+...  .
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~--------~~~~~~~~~Nv~gt~~ll~~a~~~--~  151 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD--------ERYDVALGINTLGALNVLNFAKKC--V  151 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc--------CCHHHHHHHHHHHHHHHHHHHHhc--C
Confidence            9999984       333444432       589999999976421        345668899999998888876432  1


Q ss_pred             CCCEEEEEcCCCCCCC---------CC-----------------------------------------------------
Q 042560          175 TKGKIIVVASAAGWLP---------PP-----------------------------------------------------  192 (287)
Q Consensus       175 ~~g~iv~isS~~~~~~---------~~-----------------------------------------------------  192 (287)
                      +..++|++||....-.         .+                                                     
T Consensus       152 ~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (491)
T PLN02996        152 KVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHG  231 (491)
T ss_pred             CCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCC
Confidence            1258889888643210         00                                                     


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      ....|+.||++.+.+++..+    .++.+..+.|..+..+..
T Consensus       232 ~pn~Y~~TK~~aE~lv~~~~----~~lpv~i~RP~~V~G~~~  269 (491)
T PLN02996        232 WPNTYVFTKAMGEMLLGNFK----ENLPLVIIRPTMITSTYK  269 (491)
T ss_pred             CCCchHhhHHHHHHHHHHhc----CCCCEEEECCCEeccCCc
Confidence            11359999999999997543    248889999999988753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=2.2e-10  Score=98.49  Aligned_cols=126  Identities=20%  Similarity=0.258  Sum_probs=101.2

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++|||++|-+|.++++.|. .+.+|+.++|..                      +|++|.+.+.+++++.     ++|++
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------------~Ditd~~~v~~~i~~~-----~PDvV   54 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE----------------------LDITDPDAVLEVIRET-----RPDVV   54 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------------ccccChHHHHHHHHhh-----CCCEE
Confidence            8999999999999999999 778999998854                      7999999999999876     79999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhhh
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFYN  198 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y~  198 (287)
                      ||+|++......+     .+.+..+.+|..++.++++++..    .+..+|++|+-.-+-+           ..+...|+
T Consensus        55 In~AAyt~vD~aE-----~~~e~A~~vNa~~~~~lA~aa~~----~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG  125 (281)
T COG1091          55 INAAAYTAVDKAE-----SEPELAFAVNATGAENLARAAAE----VGARLVHISTDYVFDGEKGGPYKETDTPNPLNVYG  125 (281)
T ss_pred             EECcccccccccc-----CCHHHHHHhHHHHHHHHHHHHHH----hCCeEEEeecceEecCCCCCCCCCCCCCCChhhhh
Confidence            9999987654322     34567899999999999998733    3568999997643221           22356899


Q ss_pred             hhHHHHHHHHHHHH
Q 042560          199 ASKAAKIALYETLR  212 (287)
Q Consensus       199 asKaal~~~~~~la  212 (287)
                      .||.+-+..++...
T Consensus       126 ~sKl~GE~~v~~~~  139 (281)
T COG1091         126 RSKLAGEEAVRAAG  139 (281)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999988776654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.17  E-value=5.3e-10  Score=104.24  Aligned_cols=148  Identities=11%  Similarity=-0.010  Sum_probs=105.9

Q ss_pred             EecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEEEE
Q 042560           52 ITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVT  131 (287)
Q Consensus        52 VtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli~  131 (287)
                      |+||++|+|.+++..|.+.|++|+.+.+...+...       ....++..+..|.+..+..+.                 
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~-----------------   98 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA-------GWGDRFGALVFDATGITDPAD-----------------   98 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCeeeecCcccccccc-------CcCCcccEEEEECCCCCCHHH-----------------
Confidence            88888999999999999999999988665441100       000112222233332222111                 


Q ss_pred             ccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHH
Q 042560          132 NAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL  211 (287)
Q Consensus       132 nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~l  211 (287)
                                                +.+.+...+..++.|.+ +|++|+++|..+..+   ...|+++|+++.++++++
T Consensus        99 --------------------------l~~~~~~~~~~l~~l~~-~griv~i~s~~~~~~---~~~~~~akaal~gl~rsl  148 (450)
T PRK08261         99 --------------------------LKALYEFFHPVLRSLAP-CGRVVVLGRPPEAAA---DPAAAAAQRALEGFTRSL  148 (450)
T ss_pred             --------------------------HHHHHHHHHHHHHhccC-CCEEEEEccccccCC---chHHHHHHHHHHHHHHHH
Confidence                                      22445667777787764 589999999877533   456999999999999999


Q ss_pred             HHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          212 RVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       212 a~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      ++|+...++++.|.|++                                 ..++++++++.+++++.+.|++|+.
T Consensus       149 a~E~~~gi~v~~i~~~~---------------------------------~~~~~~~~~~~~l~s~~~a~~~g~~  190 (450)
T PRK08261        149 GKELRRGATAQLVYVAP---------------------------------GAEAGLESTLRFFLSPRSAYVSGQV  190 (450)
T ss_pred             HHHhhcCCEEEEEecCC---------------------------------CCHHHHHHHHHHhcCCccCCccCcE
Confidence            99993339999998874                                 2368899999999999989999874

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.17  E-value=1.9e-10  Score=100.89  Aligned_cols=178  Identities=16%  Similarity=0.162  Sum_probs=115.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|-+|.++.+.|.++|++++.++|+                      ..|++|.+++.+++++.     ++|+
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~----------------------~~dl~d~~~~~~~~~~~-----~pd~   54 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRS----------------------DLDLTDPEAVAKLLEAF-----KPDV   54 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT----------------------CS-TTSHHHHHHHHHHH-------SE
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch----------------------hcCCCCHHHHHHHHHHh-----CCCe
Confidence            58999999999999999999999999999886                      57999999999988765     6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||+||.......+     +..+..+.+|+.++..+++.+.    +.+.++|++||..-+-+           ......|
T Consensus        55 Vin~aa~~~~~~ce-----~~p~~a~~iN~~~~~~la~~~~----~~~~~li~~STd~VFdG~~~~~y~E~d~~~P~~~Y  125 (286)
T PF04321_consen   55 VINCAAYTNVDACE-----KNPEEAYAINVDATKNLAEACK----ERGARLIHISTDYVFDGDKGGPYTEDDPPNPLNVY  125 (286)
T ss_dssp             EEE------HHHHH-----HSHHHHHHHHTHHHHHHHHHHH----HCT-EEEEEEEGGGS-SSTSSSB-TTS----SSHH
T ss_pred             EeccceeecHHhhh-----hChhhhHHHhhHHHHHHHHHHH----HcCCcEEEeeccEEEcCCcccccccCCCCCCCCHH
Confidence            99999986432211     3456688999999988888763    34679999999743211           1235689


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC----------CCHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----------QPTEEC  267 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~p~ev  267 (287)
                      +-+|...+...+..   ..   ....+.++++..+-...          ....+.+......++          ...+|+
T Consensus       126 G~~K~~~E~~v~~~---~~---~~~IlR~~~~~g~~~~~----------~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dl  189 (286)
T PF04321_consen  126 GRSKLEGEQAVRAA---CP---NALILRTSWVYGPSGRN----------FLRWLLRRLRQGEPIKLFDDQYRSPTYVDDL  189 (286)
T ss_dssp             HHHHHHHHHHHHHH----S---SEEEEEE-SEESSSSSS----------HHHHHHHHHHCTSEEEEESSCEE--EEHHHH
T ss_pred             HHHHHHHHHHHHHh---cC---CEEEEecceecccCCCc----------hhhhHHHHHhcCCeeEeeCCceeCCEEHHHH
Confidence            99999999877762   22   23445666665551111          112222222221111          138999


Q ss_pred             HHHHHHhhccC
Q 042560          268 AKAIVNSACRG  278 (287)
Q Consensus       268 A~~i~~l~~~~  278 (287)
                      |+.+..++...
T Consensus       190 A~~i~~l~~~~  200 (286)
T PF04321_consen  190 ARVILELIEKN  200 (286)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02778 3,5-epimerase/4-reductase

Probab=99.10  E-value=1.3e-09  Score=96.10  Aligned_cols=131  Identities=17%  Similarity=0.115  Sum_probs=87.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .++++||||+|.||.++++.|.++|++|+...                         .|+.|.+.+...++.     .++
T Consensus         9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~-------------------------~~~~~~~~v~~~l~~-----~~~   58 (298)
T PLN02778          9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS-------------------------GRLENRASLEADIDA-----VKP   58 (298)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec-------------------------CccCCHHHHHHHHHh-----cCC
Confidence            36799999999999999999999999986432                         234455555444432     268


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC--CC----------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA--GW----------------  188 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~--~~----------------  188 (287)
                      |++||+||....... ++ ..+...+.+++|+.++..+++++...    +-+.+++||.+  +.                
T Consensus        59 D~ViH~Aa~~~~~~~-~~-~~~~p~~~~~~Nv~gt~~ll~aa~~~----gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~  132 (298)
T PLN02778         59 THVFNAAGVTGRPNV-DW-CESHKVETIRANVVGTLTLADVCRER----GLVLTNYATGCIFEYDDAHPLGSGIGFKEED  132 (298)
T ss_pred             CEEEECCcccCCCCc-hh-hhhCHHHHHHHHHHHHHHHHHHHHHh----CCCEEEEecceEeCCCCCCCcccCCCCCcCC
Confidence            999999998653211 11 11345678899999999988887542    22344554432  11                


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHH
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRV  213 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~  213 (287)
                      .+.+....|+.+|.+.+.+++.++.
T Consensus       133 ~p~~~~s~Yg~sK~~~E~~~~~y~~  157 (298)
T PLN02778        133 TPNFTGSFYSKTKAMVEELLKNYEN  157 (298)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHhhc
Confidence            0111235799999999999987653

>PRK05865 hypothetical protein; Provisional

Probab=99.09  E-value=2.4e-09  Score=105.42  Aligned_cols=129  Identities=22%  Similarity=0.191  Sum_probs=97.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|.++|++|++++|+....      .    ...+.++.+|++|.+++.++++       ++|+
T Consensus         2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~----~~~v~~v~gDL~D~~~l~~al~-------~vD~   64 (854)
T PRK05865          2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W----PSSADFIAADIRDATAVESAMT-------GADV   64 (854)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c----ccCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence            599999999999999999999999999999975321      1    1147788999999999887764       4899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      +||+|+....              .+++|+.++..+++++    ++.+ +++|++||..              |.+.+.+
T Consensus        65 VVHlAa~~~~--------------~~~vNv~GT~nLLeAa----~~~gvkr~V~iSS~~--------------K~aaE~l  112 (854)
T PRK05865         65 VAHCAWVRGR--------------NDHINIDGTANVLKAM----AETGTGRIVFTSSGH--------------QPRVEQM  112 (854)
T ss_pred             EEECCCcccc--------------hHHHHHHHHHHHHHHH----HHcCCCeEEEECCcH--------------HHHHHHH
Confidence            9999975321              3567888876665554    4434 6999999853              8777776


Q ss_pred             HHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          208 YETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       208 ~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .+    +++  +.+..+.|+.+..+
T Consensus       113 l~----~~g--l~~vILRp~~VYGP  131 (854)
T PRK05865        113 LA----DCG--LEWVAVRCALIFGR  131 (854)
T ss_pred             HH----HcC--CCEEEEEeceEeCC
Confidence            53    232  77788888887765

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.07  E-value=2.3e-09  Score=87.08  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=71.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+ |+|.++++.|+++|++|++++|+.++.++....+..  ..++..+.+|++|++++.++++.+.++.+++|+
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~--~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT--PESITPLPLDYHDDDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence            68999998 788889999999999999999998877666554432  236888999999999999999999988899999


Q ss_pred             EEEcccc
Q 042560          129 LVTNAGV  135 (287)
Q Consensus       129 li~nag~  135 (287)
                      +|+.+-.
T Consensus        79 lv~~vh~   85 (177)
T PRK08309         79 AVAWIHS   85 (177)
T ss_pred             EEEeccc
Confidence            9987754

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.06  E-value=5.1e-09  Score=91.62  Aligned_cols=180  Identities=11%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC-cc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR-LD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~-id  127 (287)
                      +++||||+|.+|++++++|.++|++|.+.+|+.++...          ..+..+.+|+.|.+++.++++.. +...+ +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~----------~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG----------PNEKHVKFDWLDEDTWDNPFSSD-DGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC----------CCCccccccCCCHHHHHHHHhcc-cCcCCcee
Confidence            37999999999999999999999999999998775321          12556778999999999888643 22334 89


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      .++++++...          +.            ....+.+++..++.+ .++|++||.....+.+       .+...+.
T Consensus        70 ~v~~~~~~~~----------~~------------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~-------~~~~~~~  120 (285)
T TIGR03649        70 AVYLVAPPIP----------DL------------APPMIKFIDFARSKGVRRFVLLSASIIEKGGP-------AMGQVHA  120 (285)
T ss_pred             EEEEeCCCCC----------Ch------------hHHHHHHHHHHHHcCCCEEEEeeccccCCCCc-------hHHHHHH
Confidence            9998876311          10            011233444454444 6999999865443311       2222222


Q ss_pred             HHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC---cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          207 LYETLRVEFGGDIGITIVTPGLIESEITGGKFLN---KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       207 ~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +.+    +. ..+....+.|+++..++...+...   .......     .......++-.++|+|+.++.++.++
T Consensus       121 ~l~----~~-~gi~~tilRp~~f~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~v~~~Dva~~~~~~l~~~  185 (285)
T TIGR03649       121 HLD----SL-GGVEYTVLRPTWFMENFSEEFHVEAIRKENKIYS-----ATGDGKIPFVSADDIARVAYRALTDK  185 (285)
T ss_pred             HHH----hc-cCCCEEEEeccHHhhhhcccccccccccCCeEEe-----cCCCCccCcccHHHHHHHHHHHhcCC
Confidence            222    11 137788899998776543211100   0000000     00112234557999999999998764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.04  E-value=5.4e-09  Score=93.04  Aligned_cols=171  Identities=19%  Similarity=0.106  Sum_probs=120.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +..+++||||+|.+|++++.+|.+.|  .++.+.+..+....-..++. ...+.++..+.+|+.|..++...++      
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-~~~~~~v~~~~~D~~~~~~i~~a~~------   75 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-GFRSGRVTVILGDLLDANSISNAFQ------   75 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-cccCCceeEEecchhhhhhhhhhcc------
Confidence            57899999999999999999999998  68888888765211111111 1123578999999999988877764      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------CC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------PP  191 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------~~  191 (287)
                       +. .++|+|....+.-.     ..+.+..+++|+.|+-.+.+.+...   +..++|++||..-..            |.
T Consensus        76 -~~-~Vvh~aa~~~~~~~-----~~~~~~~~~vNV~gT~nvi~~c~~~---~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~  145 (361)
T KOG1430|consen   76 -GA-VVVHCAASPVPDFV-----ENDRDLAMRVNVNGTLNVIEACKEL---GVKRLIYTSSAYVVFGGEPIINGDESLPY  145 (361)
T ss_pred             -Cc-eEEEeccccCcccc-----ccchhhheeecchhHHHHHHHHHHh---CCCEEEEecCceEEeCCeecccCCCCCCC
Confidence             45 66666655433211     1235568899999987777776443   235899999975432            23


Q ss_pred             CC--ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          192 PR--MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       192 ~~--~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      |.  ...|+.||+-.+.+++..+.  .....-.++.|-.|..|--.
T Consensus       146 p~~~~d~Y~~sKa~aE~~Vl~an~--~~~l~T~aLR~~~IYGpgd~  189 (361)
T KOG1430|consen  146 PLKHIDPYGESKALAEKLVLEANG--SDDLYTCALRPPGIYGPGDK  189 (361)
T ss_pred             ccccccccchHHHHHHHHHHHhcC--CCCeeEEEEccccccCCCCc
Confidence            32  24899999999999988876  22377788888888777443

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.01  E-value=1.7e-08  Score=89.20  Aligned_cols=165  Identities=21%  Similarity=0.252  Sum_probs=117.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChh------HHHHHHH---HHHhcCCCeeEEEeecCCC------HHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARR-RARLVLVARRER------QLREVAD---QAELMGSPFALAIPADVSK------VED  111 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~------~~~~~~~---~~~~~~~~~~~~~~~D~~~------~~~  111 (287)
                      +++++|||||.+|+-+.++|..+ .++|++.-|..+      +++++..   ..+....+++.++..|++.      ...
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            57899999999999999999876 469999988544      2222222   1123455689999999983      344


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP  190 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~  190 (287)
                      .+++.+       .+|.+|||++....        ...+.+....|+.|...+++.+..    .+ ..+.++||.+....
T Consensus        81 ~~~La~-------~vD~I~H~gA~Vn~--------v~pYs~L~~~NVlGT~evlrLa~~----gk~Kp~~yVSsisv~~~  141 (382)
T COG3320          81 WQELAE-------NVDLIIHNAALVNH--------VFPYSELRGANVLGTAEVLRLAAT----GKPKPLHYVSSISVGET  141 (382)
T ss_pred             HHHHhh-------hcceEEecchhhcc--------cCcHHHhcCcchHhHHHHHHHHhc----CCCceeEEEeeeeeccc
Confidence            444443       68999999987643        244556677899999888877633    23 35888988764321


Q ss_pred             --------------------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          191 --------------------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       191 --------------------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                                          ......|+-||-+.+.+++..... +  .++..+.||.+-.+-.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-G--Lpv~I~Rpg~I~gds~  202 (382)
T COG3320         142 EYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-G--LPVTIFRPGYITGDSR  202 (382)
T ss_pred             cccCCCccccccccccccccCccCCCcchhHHHHHHHHHHHhhc-C--CCeEEEecCeeeccCc
Confidence                                112367999999999988877665 4  7888899999876654

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.99  E-value=2.3e-08  Score=95.36  Aligned_cols=125  Identities=20%  Similarity=0.277  Sum_probs=85.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhH---HHHHHHHH---------Hh-cC-------CCeeEE
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQ---LREVADQA---------EL-MG-------SPFALA  101 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~---~~~~~~~~---------~~-~~-------~~~~~~  101 (287)
                      +++|+++||||+|.+|..++++|++.+.   +|+++.|....   .+...+++         +. .+       ..++.+
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            4799999999999999999999998764   67888885432   12221111         11 11       246899


Q ss_pred             EeecCCCHH------HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC
Q 042560          102 IPADVSKVE------DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT  175 (287)
Q Consensus       102 ~~~D~~~~~------~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~  175 (287)
                      +..|+++++      ..+.+.       ..+|++||+|+....       + +.++..+++|+.+...+++.+...  +.
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~-------~~vDiVIH~AA~v~f-------~-~~~~~a~~vNV~GT~nLLelA~~~--~~  259 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIA-------KEVDVIINSAANTTF-------D-ERYDVAIDINTRGPCHLMSFAKKC--KK  259 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHH-------hcCCEEEECcccccc-------c-cCHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence            999999862      333322       258999999997542       1 446677889999998888876542  11


Q ss_pred             CCEEEEEcCCC
Q 042560          176 KGKIIVVASAA  186 (287)
Q Consensus       176 ~g~iv~isS~~  186 (287)
                      ..++|++||..
T Consensus       260 lk~fV~vSTay  270 (605)
T PLN02503        260 LKLFLQVSTAY  270 (605)
T ss_pred             CCeEEEccCce
Confidence            24788888753

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.98  E-value=4e-08  Score=103.50  Aligned_cols=212  Identities=16%  Similarity=0.135  Sum_probs=129.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC----CeEEEEeCChhHHH---HHHHHHHhcC------CCeeEEEeecCCCHHH-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR----ARLVLVARRERQLR---EVADQAELMG------SPFALAIPADVSKVED-  111 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G----~~vv~~~r~~~~~~---~~~~~~~~~~------~~~~~~~~~D~~~~~~-  111 (287)
                      ..++++||||+|.+|.+++++|.+++    .+|+++.|+.....   ...+.....+      ..++.++.+|++++.- 
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35789999999999999999999987    78999999754322   2222111111      1368889999975410 


Q ss_pred             -HHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC
Q 042560          112 -CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP  190 (287)
Q Consensus       112 -v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~  190 (287)
                       -...++++.   ..+|++||||+.....        ..+......|+.+...+++.+...   +..+++++||.....+
T Consensus      1050 l~~~~~~~l~---~~~d~iiH~Aa~~~~~--------~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~v~vSS~~v~~~ 1115 (1389)
T TIGR03443      1050 LSDEKWSDLT---NEVDVIIHNGALVHWV--------YPYSKLRDANVIGTINVLNLCAEG---KAKQFSFVSSTSALDT 1115 (1389)
T ss_pred             cCHHHHHHHH---hcCCEEEECCcEecCc--------cCHHHHHHhHHHHHHHHHHHHHhC---CCceEEEEeCeeecCc
Confidence             011222222   3689999999975421        223334457888888888776421   2258999998643210


Q ss_pred             -----------------C-----------CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcC
Q 042560          191 -----------------P-----------PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKN  242 (287)
Q Consensus       191 -----------------~-----------~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~  242 (287)
                                       .           .....|+.||.+.+.+++..+..   .+.+..+.||.+..+....... ..
T Consensus      1116 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~---g~~~~i~Rpg~v~G~~~~g~~~-~~ 1191 (1389)
T TIGR03443      1116 EYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR---GLRGCIVRPGYVTGDSKTGATN-TD 1191 (1389)
T ss_pred             ccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC---CCCEEEECCCccccCCCcCCCC-ch
Confidence                             0           01245999999999998875442   3888999999997763322110 00


Q ss_pred             CCccchHHHHhhh-----hcC----CCCCCHHHHHHHHHHhhccC
Q 042560          243 GKLEVDQEIRDVQ-----ISL----LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       243 ~~~~~~~~~~~~~-----~~~----~~~~~p~evA~~i~~l~~~~  278 (287)
                      .   ....+.+..     .+.    ..+-..+++|++++.++...
T Consensus      1192 ~---~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~ 1233 (1389)
T TIGR03443      1192 D---FLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNP 1233 (1389)
T ss_pred             h---HHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCC
Confidence            0   011111111     011    11224899999999988643

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.93  E-value=1.5e-09  Score=91.76  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             EEEEecC-CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGA-SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa-~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      +=.||.. +||||+++|++|+++|++|+++++... +       ....     ...+|+++.++++++++++.+.++++|
T Consensus        16 VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l-------~~~~-----~~~~Dv~d~~s~~~l~~~v~~~~g~iD   82 (227)
T TIGR02114        16 VRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA-L-------KPEP-----HPNLSIREIETTKDLLITLKELVQEHD   82 (227)
T ss_pred             ceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh-c-------cccc-----CCcceeecHHHHHHHHHHHHHHcCCCC
Confidence            3455555 679999999999999999999876311 1       0000     135899999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMD  155 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~  155 (287)
                      ++|||||+....+..+. +.++|++++.
T Consensus        83 iLVnnAgv~d~~~~~~~-s~e~~~~~~~  109 (227)
T TIGR02114        83 ILIHSMAVSDYTPVYMT-DLEQVQASDN  109 (227)
T ss_pred             EEEECCEeccccchhhC-CHHHHhhhcc
Confidence            99999998766555443 3466665543

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.92  E-value=1.1e-08  Score=86.73  Aligned_cols=161  Identities=17%  Similarity=0.137  Sum_probs=119.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH---HhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA---ELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+|+|||||-+|--|.=+|+.|.++|+.|.-+.|+.+......-.+   .-....+++.+.+|++|..++.++++++   
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v---   77 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV---   77 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence            3689999999999999999999999999998888644322211011   1123346889999999999999999887   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC--CC---------CCC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA--GW---------LPP  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~--~~---------~~~  191 (287)
                        .+|-++|-++.+..+     .+++++....+++..|...+++++.-+= +.+-++...||..  |.         .|+
T Consensus        78 --~PdEIYNLaAQS~V~-----vSFe~P~~T~~~~~iGtlrlLEaiR~~~-~~~~rfYQAStSE~fG~v~~~pq~E~TPF  149 (345)
T COG1089          78 --QPDEIYNLAAQSHVG-----VSFEQPEYTADVDAIGTLRLLEAIRILG-EKKTRFYQASTSELYGLVQEIPQKETTPF  149 (345)
T ss_pred             --Cchhheecccccccc-----ccccCcceeeeechhHHHHHHHHHHHhC-CcccEEEecccHHhhcCcccCccccCCCC
Confidence              689999999876554     3567777888999999999988874432 2123455444432  11         134


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGG  217 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~  217 (287)
                      .+.+.|+++|.....++...+..|+-
T Consensus       150 yPrSPYAvAKlYa~W~tvNYResYgl  175 (345)
T COG1089         150 YPRSPYAVAKLYAYWITVNYRESYGL  175 (345)
T ss_pred             CCCCHHHHHHHHHHheeeehHhhcCc
Confidence            45788999999999999999888863

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.88  E-value=4e-08  Score=96.09  Aligned_cols=141  Identities=14%  Similarity=0.072  Sum_probs=96.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .++++||||+|-||+++++.|.++|++|..                         ...|++|.+.+.+.++..     ++
T Consensus       380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~-------------------------~~~~l~d~~~v~~~i~~~-----~p  429 (668)
T PLN02260        380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEY-------------------------GKGRLEDRSSLLADIRNV-----KP  429 (668)
T ss_pred             CceEEEECCCchHHHHHHHHHHhCCCeEEe-------------------------eccccccHHHHHHHHHhh-----CC
Confidence            457999999999999999999999988631                         113577887777666543     68


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----------CC-----
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----------LP-----  190 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----------~~-----  190 (287)
                      |++||+|+....... +. ..+.....+++|+.++..+++++...    +.+++++||..-.           .|     
T Consensus       430 d~Vih~Aa~~~~~~~-~~-~~~~~~~~~~~N~~gt~~l~~a~~~~----g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~  503 (668)
T PLN02260        430 THVFNAAGVTGRPNV-DW-CESHKVETIRANVVGTLTLADVCREN----GLLMMNFATGCIFEYDAKHPEGSGIGFKEED  503 (668)
T ss_pred             CEEEECCcccCCCCC-Ch-HHhCHHHHHHHHhHHHHHHHHHHHHc----CCeEEEEcccceecCCcccccccCCCCCcCC
Confidence            999999998643211 11 11345678899999999999987542    3356666553211           01     


Q ss_pred             --CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEe
Q 042560          191 --PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVT  225 (287)
Q Consensus       191 --~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~  225 (287)
                        .+....|+.+|.+.+.+++.+...+.  +|+..+.
T Consensus       504 ~~~~~~~~Yg~sK~~~E~~~~~~~~~~~--~r~~~~~  538 (668)
T PLN02260        504 KPNFTGSFYSKTKAMVEELLREYDNVCT--LRVRMPI  538 (668)
T ss_pred             CCCCCCChhhHHHHHHHHHHHhhhhheE--EEEEEec
Confidence              12236799999999999887642221  5555544

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=98.87  E-value=9.2e-08  Score=81.18  Aligned_cols=202  Identities=13%  Similarity=0.074  Sum_probs=130.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +.+++++||||+|.||.++|.+|..+|..|++++.-....++....+...+  ++..+.-|+..+     ++.       
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~--~fel~~hdv~~p-----l~~-------   90 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHP--NFELIRHDVVEP-----LLK-------   90 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCc--ceeEEEeechhH-----HHH-------
Confidence            356899999999999999999999999999999987666555555543332  355555665543     333       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC--------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP--------------  190 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~--------------  190 (287)
                      .+|.++|-|...++..+     ....-+.+..|..+.......+...    +.+++..|+.. .+|              
T Consensus        91 evD~IyhLAapasp~~y-----~~npvktIktN~igtln~lglakrv----~aR~l~aSTse-VYgdp~~hpq~e~ywg~  160 (350)
T KOG1429|consen   91 EVDQIYHLAAPASPPHY-----KYNPVKTIKTNVIGTLNMLGLAKRV----GARFLLASTSE-VYGDPLVHPQVETYWGN  160 (350)
T ss_pred             HhhhhhhhccCCCCccc-----ccCccceeeecchhhHHHHHHHHHh----CceEEEeeccc-ccCCcccCCCccccccc
Confidence            57899999988766432     2334567788888888777665332    35777766643 222              


Q ss_pred             ---CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC-----
Q 042560          191 ---PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ-----  262 (287)
Q Consensus       191 ---~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  262 (287)
                         ....+.|...|.+.+.|+....++.+-++|+  ..+--+..|.+.-  .+  ..  +-.-+........|+.     
T Consensus       161 vnpigpr~cydegKr~aE~L~~~y~k~~giE~rI--aRifNtyGPrm~~--~d--gr--vvsnf~~q~lr~epltv~g~G  232 (350)
T KOG1429|consen  161 VNPIGPRSCYDEGKRVAETLCYAYHKQEGIEVRI--ARIFNTYGPRMHM--DD--GR--VVSNFIAQALRGEPLTVYGDG  232 (350)
T ss_pred             cCcCCchhhhhHHHHHHHHHHHHhhcccCcEEEE--EeeecccCCcccc--CC--Ch--hhHHHHHHHhcCCCeEEEcCC
Confidence               2246789999999999999998887743333  3333333333220  00  00  0112222333333321     


Q ss_pred             -------CHHHHHHHHHHhhccC
Q 042560          263 -------PTEECAKAIVNSACRG  278 (287)
Q Consensus       263 -------~p~evA~~i~~l~~~~  278 (287)
                             =.+|+.+.++.|+..+
T Consensus       233 ~qtRSF~yvsD~Vegll~Lm~s~  255 (350)
T KOG1429|consen  233 KQTRSFQYVSDLVEGLLRLMESD  255 (350)
T ss_pred             cceEEEEeHHHHHHHHHHHhcCC
Confidence                   1899999999999765

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.87  E-value=1e-07  Score=88.46  Aligned_cols=228  Identities=15%  Similarity=0.068  Sum_probs=137.9

Q ss_pred             ccCCCCCCCCEEEEecCC-ChHHHHHHHHHHHcCCeEEEEeCChhHH-HHHHHHH-Hh--cCCCeeEEEeecCCCHHHHH
Q 042560           39 TINAEDVAGKVVLITGAS-SGIGKHLAYEYARRRARLVLVARRERQL-REVADQA-EL--MGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~-~giG~aia~~L~~~G~~vv~~~r~~~~~-~~~~~~~-~~--~~~~~~~~~~~D~~~~~~v~  113 (287)
                      .++.-...+++++||||+ +.||.+++.+|+..|++|+++..+.++. .+..+.+ ..  .++..+.+++++.++..+++
T Consensus       388 ~p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVd  467 (866)
T COG4982         388 KPNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVD  467 (866)
T ss_pred             CCCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHH
Confidence            356677789999999999 6799999999999999999987765532 2333333 22  23456889999999999999


Q ss_pred             HHHHHHHHhcC--------------CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--C
Q 042560          114 HFVDVTMEHFG--------------RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--G  177 (287)
Q Consensus       114 ~~~~~~~~~~~--------------~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g  177 (287)
                      ++++.+-....              .+|.+|--|.+...+...+..+  .-+..+++-+++...++-.+.++-.+++  +
T Consensus       468 AlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~ags--raE~~~rilLw~V~Rliggl~~~~s~r~v~~  545 (866)
T COG4982         468 ALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGS--RAEFAMRILLWNVLRLIGGLKKQGSSRGVDT  545 (866)
T ss_pred             HHHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCc--hHHHHHHHHHHHHHHHHHHhhhhccccCccc
Confidence            99999876432              2466666666555443333222  1122233333333333333333222222  2


Q ss_pred             --EEEEE-cCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHh--CCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHH
Q 042560          178 --KIIVV-ASAAGWLPPPRMSFYNASKAAKIALYETLRVEF--GGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIR  252 (287)
Q Consensus       178 --~iv~i-sS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~--~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~  252 (287)
                        ++|.= |-..|.  +.+.+.|+-+|++++.+.-.+..|-  +.++.+-.-.-|+++..-   .+..++    ..-+..
T Consensus       546 R~hVVLPgSPNrG~--FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG---LMg~Nd----iiv~ai  616 (866)
T COG4982         546 RLHVVLPGSPNRGM--FGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG---LMGHND----IIVAAI  616 (866)
T ss_pred             ceEEEecCCCCCCc--cCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc---ccCCcc----hhHHHH
Confidence              33332 323333  2357789999999999988887763  333444445667775431   122221    111112


Q ss_pred             hhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          253 DVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       253 ~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++  ....=+++|+|.-++-||+.+.
T Consensus       617 Ek~--GV~tyS~~EmA~~LLgL~saev  641 (866)
T COG4982         617 EKA--GVRTYSTDEMAFNLLGLASAEV  641 (866)
T ss_pred             HHh--CceecCHHHHHHHHHhhccHHH
Confidence            221  1122368999999999998753

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.86  E-value=1.3e-08  Score=88.90  Aligned_cols=196  Identities=11%  Similarity=0.028  Sum_probs=103.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++||||+|.||.++++.|+++|++|++++|+.........         ..  ..|... +..       .+...++|++
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~--~~~~~~-~~~-------~~~~~~~D~V   61 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW---------EG--YKPWAP-LAE-------SEALEGADAV   61 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc---------ee--eecccc-cch-------hhhcCCCCEE
Confidence            5899999999999999999999999999998765432110         00  112221 111       1233579999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--C-EEEEEcCCCCCCCC-----------C-CC
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--G-KIIVVASAAGWLPP-----------P-RM  194 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g-~iv~isS~~~~~~~-----------~-~~  194 (287)
                      ||+||......  .+ ..+.....++.|+.+...+++++..    .+  . .+++.|+. +.++.           + ..
T Consensus        62 vh~a~~~~~~~--~~-~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~~i~~S~~-~~yg~~~~~~~~E~~~~~~~  133 (292)
T TIGR01777        62 INLAGEPIADK--RW-TEERKQEIRDSRIDTTRALVEAIAA----AEQKPKVFISASAV-GYYGTSEDRVFTEEDSPAGD  133 (292)
T ss_pred             EECCCCCcccc--cC-CHHHHHHHHhcccHHHHHHHHHHHh----cCCCceEEEEeeeE-EEeCCCCCCCcCcccCCCCC
Confidence            99999643211  11 1122345667888887776666533    22  2 33333432 22211           0 11


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcC--CCccchHHHHhhhhcCCCCCCHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKN--GKLEVDQEIRDVQISLLPVQPTEECAKAI  271 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~evA~~i  271 (287)
                      ..|+..+...+...+.    +... +.+..+.|+.+..+... ......  .... .............+...+|+|+++
T Consensus       134 ~~~~~~~~~~e~~~~~----~~~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~-~~~~~g~~~~~~~~i~v~Dva~~i  207 (292)
T TIGR01777       134 DFLAELCRDWEEAAQA----AEDLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLG-LGGPLGSGRQWFSWIHIEDLVQLI  207 (292)
T ss_pred             ChHHHHHHHHHHHhhh----chhcCCceEEEeeeeEECCCcc-hhHHHHHHHhcC-cccccCCCCcccccEeHHHHHHHH
Confidence            1233333333333222    2223 88899999998776311 000000  0000 000000000112333589999999


Q ss_pred             HHhhccC
Q 042560          272 VNSACRG  278 (287)
Q Consensus       272 ~~l~~~~  278 (287)
                      ..++..+
T Consensus       208 ~~~l~~~  214 (292)
T TIGR01777       208 LFALENA  214 (292)
T ss_pred             HHHhcCc
Confidence            9998753

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN00016 RNA-binding protein; Provisional

Probab=98.84  E-value=2.2e-07  Score=84.73  Aligned_cols=185  Identities=16%  Similarity=0.107  Sum_probs=110.4

Q ss_pred             CCCCCCCEEEEe----cCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH-------HHHHhcCCCeeEEEeecCCCHH
Q 042560           42 AEDVAGKVVLIT----GASSGIGKHLAYEYARRRARLVLVARRERQLREVA-------DQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        42 ~~~~~~k~alVt----Ga~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      ......++++||    ||+|.||..++++|.++|++|++++|+........       .++..   ..+.++.+|+.|  
T Consensus        47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~---~~v~~v~~D~~d--  121 (378)
T PLN00016         47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSS---AGVKTVWGDPAD--  121 (378)
T ss_pred             hcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhh---cCceEEEecHHH--
Confidence            344456789999    99999999999999999999999999875432211       11111   137788888866  


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL  189 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~  189 (287)
                       +.+++.     ..++|++||+++.          +           ..+    .+.++...++.+ .++|++||.....
T Consensus       122 -~~~~~~-----~~~~d~Vi~~~~~----------~-----------~~~----~~~ll~aa~~~gvkr~V~~SS~~vyg  170 (378)
T PLN00016        122 -VKSKVA-----GAGFDVVYDNNGK----------D-----------LDE----VEPVADWAKSPGLKQFLFCSSAGVYK  170 (378)
T ss_pred             -HHhhhc-----cCCccEEEeCCCC----------C-----------HHH----HHHHHHHHHHcCCCEEEEEccHhhcC
Confidence             333221     1368999998652          0           111    233344444444 6899999875332


Q ss_pred             CCCC--------ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---
Q 042560          190 PPPR--------MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---  258 (287)
Q Consensus       190 ~~~~--------~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---  258 (287)
                      ....        ...+. +|...+.+.+    +.  .+.+..+.|+.+..+......         ...+.......   
T Consensus       171 ~~~~~p~~E~~~~~p~~-sK~~~E~~l~----~~--~l~~~ilRp~~vyG~~~~~~~---------~~~~~~~~~~~~~i  234 (378)
T PLN00016        171 KSDEPPHVEGDAVKPKA-GHLEVEAYLQ----KL--GVNWTSFRPQYIYGPGNNKDC---------EEWFFDRLVRGRPV  234 (378)
T ss_pred             CCCCCCCCCCCcCCCcc-hHHHHHHHHH----Hc--CCCeEEEeceeEECCCCCCch---------HHHHHHHHHcCCce
Confidence            1110        01112 7887776653    22  278888999988876432100         01111111110   


Q ss_pred             ---------CCCCCHHHHHHHHHHhhccC
Q 042560          259 ---------LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 ---------~~~~~p~evA~~i~~l~~~~  278 (287)
                               ..+...+|+|++++.++.++
T Consensus       235 ~~~g~g~~~~~~i~v~Dva~ai~~~l~~~  263 (378)
T PLN00016        235 PIPGSGIQLTQLGHVKDLASMFALVVGNP  263 (378)
T ss_pred             eecCCCCeeeceecHHHHHHHHHHHhcCc
Confidence                     11224899999999998764

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.76  E-value=4.8e-08  Score=89.06  Aligned_cols=83  Identities=31%  Similarity=0.291  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC
Q 042560           43 EDVAGKVVLITGA----------------SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV  106 (287)
Q Consensus        43 ~~~~~k~alVtGa----------------~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~  106 (287)
                      .+++||+++||||                +|++|+++|++|+++|++|++++++.+ ++       . .   .....+|+
T Consensus       184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~-~---~~~~~~dv  251 (399)
T PRK05579        184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T-P---AGVKRIDV  251 (399)
T ss_pred             cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C-C---CCcEEEcc
Confidence            3579999999999                445999999999999999999998753 11       0 1   11245799


Q ss_pred             CCHHHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       107 ~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                      ++.+++.+.++   +.++++|++|||||+....+
T Consensus       252 ~~~~~~~~~v~---~~~~~~DilI~~Aav~d~~~  282 (399)
T PRK05579        252 ESAQEMLDAVL---AALPQADIFIMAAAVADYRP  282 (399)
T ss_pred             CCHHHHHHHHH---HhcCCCCEEEEccccccccc
Confidence            99888766665   45788999999999876544

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=98.74  E-value=6.7e-08  Score=81.90  Aligned_cols=193  Identities=16%  Similarity=0.100  Sum_probs=113.9

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++||||||-||++++.+|.+.|++|.++.|+..+.+....           .   .+...+.+....    .  .++|++
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~-----------~---~v~~~~~~~~~~----~--~~~Dav   60 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH-----------P---NVTLWEGLADAL----T--LGIDAV   60 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC-----------c---cccccchhhhcc----c--CCCCEE
Confidence            5899999999999999999999999999999887543211           0   111112221111    1  169999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCCCCCCCChhhhhhH----HH
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASK----AA  203 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~--~~g~iv~isS~~~~~~~~~~~~Y~asK----aa  203 (287)
                      ||-||..-....  + +.+.-+.+    ..|-+..++.+...+.+  ++.++..=+|..|.++......|.-..    -.
T Consensus        61 INLAG~~I~~rr--W-t~~~K~~i----~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~F  133 (297)
T COG1090          61 INLAGEPIAERR--W-TEKQKEEI----RQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDF  133 (297)
T ss_pred             EECCCCcccccc--C-CHHHHHHH----HHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCCh
Confidence            999997543221  1 11112222    34566777777777653  344555556677777765544443333    34


Q ss_pred             HHHHHHHHHHHhC---C-CeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC---------CHHHHHHH
Q 042560          204 KIALYETLRVEFG---G-DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---------PTEECAKA  270 (287)
Q Consensus       204 l~~~~~~la~e~~---~-~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~evA~~  270 (287)
                      +..+++.|-.+..   . ..||..+.-|.|-.+..-...  +      ..-.++ .....++|         .-||+.++
T Consensus       134 la~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~--~------m~~~fk-~glGG~~GsGrQ~~SWIhieD~v~~  204 (297)
T COG1090         134 LAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALG--K------MLPLFK-LGLGGKLGSGRQWFSWIHIEDLVNA  204 (297)
T ss_pred             HHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchh--h------hcchhh-hccCCccCCCCceeeeeeHHHHHHH
Confidence            5555555554432   2 289999988888765322110  0      000011 11123333         38999999


Q ss_pred             HHHhhccC
Q 042560          271 IVNSACRG  278 (287)
Q Consensus       271 i~~l~~~~  278 (287)
                      |.|++++.
T Consensus       205 I~fll~~~  212 (297)
T COG1090         205 ILFLLENE  212 (297)
T ss_pred             HHHHHhCc
Confidence            99999874

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.69  E-value=1.1e-07  Score=83.50  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCCh---hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRE---RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++++|+++|+|| ||+|++++..|++.|++ |.+++|+.   ++.+++.+++...+. .+....+|+++.+++++.++  
T Consensus       123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~-~~~~~~~d~~~~~~~~~~~~--  198 (289)
T PRK12548        123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVP-ECIVNVYDLNDTEKLKAEIA--  198 (289)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCC-CceeEEechhhhhHHHhhhc--
Confidence            468999999999 69999999999999996 99999986   666777666644332 35556788887766655433  


Q ss_pred             HHhcCCccEEEEccccC
Q 042560          120 MEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       120 ~~~~~~idvli~nag~~  136 (287)
                           ..|++|||....
T Consensus       199 -----~~DilINaTp~G  210 (289)
T PRK12548        199 -----SSDILVNATLVG  210 (289)
T ss_pred             -----cCCEEEEeCCCC
Confidence                 459999999665

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.68  E-value=3.6e-07  Score=77.56  Aligned_cols=192  Identities=14%  Similarity=0.057  Sum_probs=110.0

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++|+||+|.+|+.+++.|.+.+++|.++.|+...  +..++++..+   +..+.+|..|.+++.++++       ++|.+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~g---~~vv~~d~~~~~~l~~al~-------g~d~v   68 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQALG---AEVVEADYDDPESLVAALK-------GVDAV   68 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHTT---TEEEES-TT-HHHHHHHHT-------TCSEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhccc---ceEeecccCCHHHHHHHHc-------CCceE
Confidence            6899999999999999999999999999998743  2233444433   5677999999999888775       78999


Q ss_pred             EEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCC--C--ChhhhhhHHHH
Q 042560          130 VTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPP--R--MSFYNASKAAK  204 (287)
Q Consensus       130 i~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~--~--~~~Y~asKaal  204 (287)
                      +++.+...        + .        .......+++++..    .+ .++|+ ||........  .  ....-..|..+
T Consensus        69 ~~~~~~~~--------~-~--------~~~~~~~li~Aa~~----agVk~~v~-ss~~~~~~~~~~~~p~~~~~~~k~~i  126 (233)
T PF05368_consen   69 FSVTPPSH--------P-S--------ELEQQKNLIDAAKA----AGVKHFVP-SSFGADYDESSGSEPEIPHFDQKAEI  126 (233)
T ss_dssp             EEESSCSC--------C-C--------HHHHHHHHHHHHHH----HT-SEEEE-SEESSGTTTTTTSTTHHHHHHHHHHH
T ss_pred             EeecCcch--------h-h--------hhhhhhhHHHhhhc----cccceEEE-EEecccccccccccccchhhhhhhhh
Confidence            99887533        0 1        11122334444432    23 57774 5544433211  1  12233467666


Q ss_pred             HHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccc-hHHHHhhhhcCCCC-CCHHHHHHHHHHhhccCCcc
Q 042560          205 IALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEV-DQEIRDVQISLLPV-QPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       205 ~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~p~evA~~i~~l~~~~~~~  281 (287)
                      +.+.+..      .+....|.||+........+.......... .-........+... -+++|+|+.++.++.++...
T Consensus       127 e~~l~~~------~i~~t~i~~g~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~  199 (233)
T PF05368_consen  127 EEYLRES------GIPYTIIRPGFFMENLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKH  199 (233)
T ss_dssp             HHHHHHC------TSEBEEEEE-EEHHHHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGT
T ss_pred             hhhhhhc------cccceeccccchhhhhhhhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHh
Confidence            6555443      366778889887665443222100000000 00000000011122 25899999999999886443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.68  E-value=3.1e-07  Score=75.83  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++++++|.||+|++|+++++.|+++|++|++++|+.++.++..+.+....+  .....+|..+.+++.+.++    
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~----   96 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFG--EGVGAVETSDDAARAAAIK----   96 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcC--CcEEEeeCCCHHHHHHHHh----
Confidence            4577899999999999999999999999999999999999888887777653332  3345678888887766653    


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                         +.|++|++.....
T Consensus        97 ---~~diVi~at~~g~  109 (194)
T cd01078          97 ---GADVVFAAGAAGV  109 (194)
T ss_pred             ---cCCEEEECCCCCc
Confidence               4688888776443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.61  E-value=1.6e-06  Score=78.87  Aligned_cols=113  Identities=24%  Similarity=0.235  Sum_probs=77.1

Q ss_pred             CCCCCCEEEEecC---------------CCh-HHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC
Q 042560           43 EDVAGKVVLITGA---------------SSG-IGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV  106 (287)
Q Consensus        43 ~~~~~k~alVtGa---------------~~g-iG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~  106 (287)
                      .+++||+++||||               ||| +|.++|++|..+|++|+++.++....         .+ .  .....|+
T Consensus       181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~---------~~-~--~~~~~~v  248 (390)
T TIGR00521       181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL---------TP-P--GVKSIKV  248 (390)
T ss_pred             cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC---------CC-C--CcEEEEe
Confidence            3479999999999               667 99999999999999999988765421         11 1  1245899


Q ss_pred             CCHHHH-HHHHHHHHHhcCCccEEEEccccCCCCCCCCC-CCCCCcccchhehhhhHHHHHHHHHH
Q 042560          107 SKVEDC-KHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDY-TDITKPAPAMDINFWGSAYGTYFAIP  170 (287)
Q Consensus       107 ~~~~~v-~~~~~~~~~~~~~idvli~nag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~  170 (287)
                      ++.+++ +++.++.   .+++|++|+|||+..+.+.... ...+...+.+.+++...-.+++.+..
T Consensus       249 ~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~  311 (390)
T TIGR00521       249 STAEEMLEAALNEL---AKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRK  311 (390)
T ss_pred             ccHHHHHHHHHHhh---cccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHh
Confidence            998888 5555442   4679999999999866543321 11122223456676666666665543

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK12320 hypothetical protein; Provisional

Probab=98.57  E-value=6.1e-07  Score=86.91  Aligned_cols=174  Identities=14%  Similarity=0.142  Sum_probs=106.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|.||.+++++|.++|++|++++|+....         . ...+.++.+|+++.. +.+++       .++|+
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---------~-~~~ve~v~~Dl~d~~-l~~al-------~~~D~   63 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---------L-DPRVDYVCASLRNPV-LQELA-------GEADA   63 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---------c-cCCceEEEccCCCHH-HHHHh-------cCCCE
Confidence            599999999999999999999999999999865421         0 124778899999873 33332       25899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY  208 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~  208 (287)
                      +||.++....         +    ...+|+.+..++++++    ++.+.++|++||..|.   +  ..|.    ..+.+.
T Consensus        64 VIHLAa~~~~---------~----~~~vNv~Gt~nLleAA----~~~GvRiV~~SS~~G~---~--~~~~----~aE~ll  117 (699)
T PRK12320         64 VIHLAPVDTS---------A----PGGVGITGLAHVANAA----ARAGARLLFVSQAAGR---P--ELYR----QAETLV  117 (699)
T ss_pred             EEEcCccCcc---------c----hhhHHHHHHHHHHHHH----HHcCCeEEEEECCCCC---C--cccc----HHHHHH
Confidence            9999986311         1    1136777777777665    3344589999987432   1  1132    123322


Q ss_pred             HHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC--CCHHHHHHHHHHhhccC
Q 042560          209 ETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV--QPTEECAKAIVNSACRG  278 (287)
Q Consensus       209 ~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~evA~~i~~l~~~~  278 (287)
                          ..+.  +.+..+.|+.+..+......      ......+........|+  --.+|++++++.+++.+
T Consensus       118 ----~~~~--~p~~ILR~~nVYGp~~~~~~------~r~I~~~l~~~~~~~pI~vIyVdDvv~alv~al~~~  177 (699)
T PRK12320        118 ----STGW--APSLVIRIAPPVGRQLDWMV------CRTVATLLRSKVSARPIRVLHLDDLVRFLVLALNTD  177 (699)
T ss_pred             ----HhcC--CCEEEEeCceecCCCCcccH------hHHHHHHHHHHHcCCceEEEEHHHHHHHHHHHHhCC
Confidence                2221  56677777777665221100      00111222222222222  14799999999988653

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.48  E-value=8.5e-07  Score=87.46  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=129.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHH---HHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLRE---VADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..|..+|+||-||.|+.++..|.++|+ .+++++|+.-+.--   ....+++.+ .++.+-.-|++..+..+.++++..+
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~G-VqV~vsT~nitt~~ga~~Li~~s~k 1845 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRG-VQVQVSTSNITTAEGARGLIEESNK 1845 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcC-eEEEEecccchhhhhHHHHHHHhhh
Confidence            578899999999999999999999999 58888887554322   233444443 4677777888888888888877654


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       .+.+-.++|-|.+...+.+++. +.+.+++.-+..+.++.++-+.....-.. -..+|.+||.+.-++..++..|+-+.
T Consensus      1846 -l~~vGGiFnLA~VLRD~LiEnQ-t~knFk~va~pK~~~Ti~LD~~sRe~C~~-LdyFv~FSSvscGRGN~GQtNYG~aN 1922 (2376)
T KOG1202|consen 1846 -LGPVGGIFNLAAVLRDGLIENQ-TPKNFKDVAKPKYSGTINLDRVSREICPE-LDYFVVFSSVSCGRGNAGQTNYGLAN 1922 (2376)
T ss_pred             -cccccchhhHHHHHHhhhhccc-ChhHHHhhhccceeeeeehhhhhhhhCcc-cceEEEEEeecccCCCCcccccchhh
Confidence             4889999999988877767664 55888888888888888766654332111 14899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 042560          202 AAKIALYETLRVEFGGD  218 (287)
Q Consensus       202 aal~~~~~~la~e~~~~  218 (287)
                      ++.+-++..-+.+--+.
T Consensus      1923 S~MERiceqRr~~GfPG 1939 (2376)
T KOG1202|consen 1923 SAMERICEQRRHEGFPG 1939 (2376)
T ss_pred             HHHHHHHHHhhhcCCCc
Confidence            99999988766553333

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=98.45  E-value=1.8e-06  Score=73.39  Aligned_cols=169  Identities=15%  Similarity=0.088  Sum_probs=114.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeC---ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR--ARLVLVAR---RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+.++||||.|.||...+..++..-  ++.+..+-   ...  ....+++..  ..+-.++..|+.++..+.-++..  
T Consensus         5 ~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~~~l~~~~n--~p~ykfv~~di~~~~~~~~~~~~--   78 (331)
T KOG0747|consen    5 KEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--LKNLEPVRN--SPNYKFVEGDIADADLVLYLFET--   78 (331)
T ss_pred             ccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--cchhhhhcc--CCCceEeeccccchHHHHhhhcc--
Confidence            34889999999999999999999874  45544432   111  222233333  34678999999998887776643  


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC------------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW------------  188 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~------------  188 (287)
                         ..+|.++|-|+.......    . -+.-..+..|+.+...+++.+.....  -.++|.+|+..-.            
T Consensus        79 ---~~id~vihfaa~t~vd~s----~-~~~~~~~~nnil~t~~Lle~~~~sg~--i~~fvhvSTdeVYGds~~~~~~~E~  148 (331)
T KOG0747|consen   79 ---EEIDTVIHFAAQTHVDRS----F-GDSFEFTKNNILSTHVLLEAVRVSGN--IRRFVHVSTDEVYGDSDEDAVVGEA  148 (331)
T ss_pred             ---CchhhhhhhHhhhhhhhh----c-CchHHHhcCCchhhhhHHHHHHhccC--eeEEEEecccceecCcccccccccc
Confidence               489999999987654321    1 11123456788888888888755421  1489999875321            


Q ss_pred             -CCCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          189 -LPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       189 -~~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                       .+. +...|+++|+|.+++.+++.+.|+  +.+..+.-+-|..|-
T Consensus       149 s~~n-PtnpyAasKaAaE~~v~Sy~~sy~--lpvv~~R~nnVYGP~  191 (331)
T KOG0747|consen  149 SLLN-PTNPYAASKAAAEMLVRSYGRSYG--LPVVTTRMNNVYGPN  191 (331)
T ss_pred             ccCC-CCCchHHHHHHHHHHHHHHhhccC--CcEEEEeccCccCCC
Confidence             122 245699999999999999999998  556555555555553

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=98.40  E-value=5.8e-06  Score=75.96  Aligned_cols=175  Identities=20%  Similarity=0.237  Sum_probs=111.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhH------HH-----HHHHHHHhc-C--CCeeEEEeecCC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQ------LR-----EVADQAELM-G--SPFALAIPADVS  107 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~------~~-----~~~~~~~~~-~--~~~~~~~~~D~~  107 (287)
                      ++||+++||||+|.+|+-+..+|++.-.   ++++.-|....      ++     ++-+.++.. +  -.++..+.+|++
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            4899999999999999999999998632   67777764221      11     112222222 1  237888889988


Q ss_pred             CHHH-HH-HHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCC
Q 042560          108 KVED-CK-HFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASA  185 (287)
Q Consensus       108 ~~~~-v~-~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~  185 (287)
                      +++- ++ .-.+.+   ...+|++||.|+...+.        |.++..+.+|..|+..+.+.+....+  -...+.+|..
T Consensus        90 ~~~LGis~~D~~~l---~~eV~ivih~AAtvrFd--------e~l~~al~iNt~Gt~~~l~lak~~~~--l~~~vhVSTA  156 (467)
T KOG1221|consen   90 EPDLGISESDLRTL---ADEVNIVIHSAATVRFD--------EPLDVALGINTRGTRNVLQLAKEMVK--LKALVHVSTA  156 (467)
T ss_pred             CcccCCChHHHHHH---HhcCCEEEEeeeeeccc--------hhhhhhhhhhhHhHHHHHHHHHHhhh--hheEEEeehh
Confidence            6632 11 111111   23799999999975532        55677899999999999888866542  2367777766


Q ss_pred             CCC----------CCCCC------------------------------ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEe
Q 042560          186 AGW----------LPPPR------------------------------MSFYNASKAAKIALYETLRVEFGGDIGITIVT  225 (287)
Q Consensus       186 ~~~----------~~~~~------------------------------~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~  225 (287)
                      ...          ++.+.                              ...|.=+||-.+++...-+.+    ..+..++
T Consensus       157 y~n~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~----lPivIiR  232 (467)
T KOG1221|consen  157 YSNCNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAEN----LPLVIIR  232 (467)
T ss_pred             heecccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccC----CCeEEEc
Confidence            443          11110                              224666666666655443333    5677888


Q ss_pred             CCcccCCCcCC
Q 042560          226 PGLIESEITGG  236 (287)
Q Consensus       226 PG~v~t~~~~~  236 (287)
                      |.+|.....+.
T Consensus       233 PsiI~st~~EP  243 (467)
T KOG1221|consen  233 PSIITSTYKEP  243 (467)
T ss_pred             CCceeccccCC
Confidence            88887766554

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.34  E-value=1.8e-06  Score=73.12  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSG-IGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~g-iG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .+-.||+.++| +|+++|++|+++|++|++++|+....        ......+.++.++  +.   ++..+.+.+..+.+
T Consensus        16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~~~~~v~~i~v~--s~---~~m~~~l~~~~~~~   82 (229)
T PRK06732         16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PEPHPNLSIIEIE--NV---DDLLETLEPLVKDH   82 (229)
T ss_pred             CceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CCCCCCeEEEEEe--cH---HHHHHHHHHHhcCC
Confidence            35678877765 99999999999999999998764211        0001134444432  22   22233333344578


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehh
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINF  158 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~  158 (287)
                      |++|||||+....+... .+.+++.+++++|.
T Consensus        83 DivIh~AAvsd~~~~~~-~~~~~~~~~~~v~~  113 (229)
T PRK06732         83 DVLIHSMAVSDYTPVYM-TDLEEVSASDNLNE  113 (229)
T ss_pred             CEEEeCCccCCceehhh-hhhhhhhhhhhhhh
Confidence            99999999976544322 23455666655544

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=3.9e-05  Score=69.47  Aligned_cols=177  Identities=15%  Similarity=0.127  Sum_probs=104.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +....+..+++|+||+|+.|+-+++.|.++|+.|.++-|+.++.+.........  .....+..|.....+...-..+..
T Consensus        73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d--~~~~~v~~~~~~~~d~~~~~~~~~  150 (411)
T KOG1203|consen   73 NNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVD--LGLQNVEADVVTAIDILKKLVEAV  150 (411)
T ss_pred             CCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccc--cccceeeeccccccchhhhhhhhc
Confidence            344556788999999999999999999999999999999988877665511111  123444555554444332222211


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      .  -...+++-++|..+...        +......+.+.+..++.+++..    .+ .++|.+||..+.........+..
T Consensus       151 ~--~~~~~v~~~~ggrp~~e--------d~~~p~~VD~~g~knlvdA~~~----aGvk~~vlv~si~~~~~~~~~~~~~~  216 (411)
T KOG1203|consen  151 P--KGVVIVIKGAGGRPEEE--------DIVTPEKVDYEGTKNLVDACKK----AGVKRVVLVGSIGGTKFNQPPNILLL  216 (411)
T ss_pred             c--ccceeEEecccCCCCcc--------cCCCcceecHHHHHHHHHHHHH----hCCceEEEEEeecCcccCCCchhhhh
Confidence            1  12456666666543321        2333445778888888888722    23 59999999888765443333331


Q ss_pred             hHHHHHHHHHHHH-HHhCCC-eEEEEEeCCcccCCCcC
Q 042560          200 SKAAKIALYETLR-VEFGGD-IGITIVTPGLIESEITG  235 (287)
Q Consensus       200 sKaal~~~~~~la-~e~~~~-i~v~~i~PG~v~t~~~~  235 (287)
                        .....-.+.++ ..+... +.=..|.||..+.+...
T Consensus       217 --~~~~~~~k~~~e~~~~~Sgl~ytiIR~g~~~~~~~~  252 (411)
T KOG1203|consen  217 --NGLVLKAKLKAEKFLQDSGLPYTIIRPGGLEQDTGG  252 (411)
T ss_pred             --hhhhhHHHHhHHHHHHhcCCCcEEEeccccccCCCC
Confidence              11111111222 222233 55567888887776543

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=98.29  E-value=1.1e-05  Score=68.74  Aligned_cols=140  Identities=17%  Similarity=0.135  Sum_probs=94.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+.+|-++-|.||+|.+|+-++.+|++.|.+|++-.|..+.--   .+++..+ -+++.++..|+.|+++++++++   
T Consensus        56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkvmGdLGQvl~~~fd~~DedSIr~vvk---  129 (391)
T KOG2865|consen   56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKVMGDLGQVLFMKFDLRDEDSIRAVVK---  129 (391)
T ss_pred             cccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheeecccccceeeeccCCCCHHHHHHHHH---
Confidence            35667889999999999999999999999999999988654311   1122222 1379999999999999999886   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                          +-+++||-.|--.+..        .+ .--++|..++-.+++.+    ++.+ -++|.+|+..+-  ....+-|=-
T Consensus       130 ----~sNVVINLIGrd~eTk--------nf-~f~Dvn~~~aerlAric----ke~GVerfIhvS~Lgan--v~s~Sr~Lr  190 (391)
T KOG2865|consen  130 ----HSNVVINLIGRDYETK--------NF-SFEDVNVHIAERLARIC----KEAGVERFIHVSCLGAN--VKSPSRMLR  190 (391)
T ss_pred             ----hCcEEEEeeccccccC--------Cc-ccccccchHHHHHHHHH----HhhChhheeehhhcccc--ccChHHHHH
Confidence                4589999999643321        11 12346666665555554    3323 488999887743  222333555


Q ss_pred             hHHHHHH
Q 042560          200 SKAAKIA  206 (287)
Q Consensus       200 sKaal~~  206 (287)
                      +|++-+-
T Consensus       191 sK~~gE~  197 (391)
T KOG2865|consen  191 SKAAGEE  197 (391)
T ss_pred             hhhhhHH
Confidence            5655544

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.26  E-value=3.7e-05  Score=66.44  Aligned_cols=135  Identities=13%  Similarity=0.045  Sum_probs=94.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++||||||.+|.+++++|.++|++|.+..|+.+......        ..+.....|+.+++++...++       ++|.
T Consensus         2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--------~~v~~~~~d~~~~~~l~~a~~-------G~~~   66 (275)
T COG0702           2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--------GGVEVVLGDLRDPKSLVAGAK-------GVDG   66 (275)
T ss_pred             eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--------CCcEEEEeccCCHhHHHHHhc-------cccE
Confidence            5899999999999999999999999999999999876654        248888999999999877764       6788


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY  208 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~  208 (287)
                      +++..+... ... .         .............+...    ....+++.+|...+..  .....|..+|...+...
T Consensus        67 ~~~i~~~~~-~~~-~---------~~~~~~~~~~~~a~~a~----~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~e~~l  129 (275)
T COG0702          67 VLLISGLLD-GSD-A---------FRAVQVTAVVRAAEAAG----AGVKHGVSLSVLGADA--ASPSALARAKAAVEAAL  129 (275)
T ss_pred             EEEEecccc-ccc-c---------hhHHHHHHHHHHHHHhc----CCceEEEEeccCCCCC--CCccHHHHHHHHHHHHH
Confidence            887777543 211 0         11122223333333321    1124677777766543  34667999999888877


Q ss_pred             HHHHHHh
Q 042560          209 ETLRVEF  215 (287)
Q Consensus       209 ~~la~e~  215 (287)
                      +.....+
T Consensus       130 ~~sg~~~  136 (275)
T COG0702         130 RSSGIPY  136 (275)
T ss_pred             HhcCCCe
Confidence            6655443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.22  E-value=7.3e-06  Score=76.50  Aligned_cols=79  Identities=25%  Similarity=0.365  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++|+|+++ +|.++|+.|+++|++|.+++++. +.+++..+++...+   +.++..|..+.            
T Consensus         1 ~~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~------------   64 (450)
T PRK14106          1 MELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG---IELVLGEYPEE------------   64 (450)
T ss_pred             CCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC---CEEEeCCcchh------------
Confidence            367899999999887 99999999999999999999975 44444444444332   55667777651            


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                      ..+..|++|+++|...
T Consensus        65 ~~~~~d~vv~~~g~~~   80 (450)
T PRK14106         65 FLEGVDLVVVSPGVPL   80 (450)
T ss_pred             HhhcCCEEEECCCCCC
Confidence            1257899999999753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.16  E-value=1.5e-05  Score=61.92  Aligned_cols=79  Identities=25%  Similarity=0.347  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++++++|.|| ||.|++++..|.+.|++ +.++.|+.++.+++.+.+   ++..+..+..  .+..   +..     
T Consensus         8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~--~~~~---~~~-----   73 (135)
T PF01488_consen    8 GDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPL--EDLE---EAL-----   73 (135)
T ss_dssp             STGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEG--GGHC---HHH-----
T ss_pred             CCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeH--HHHH---HHH-----
Confidence            3789999999998 89999999999999996 999999999999888887   2223444333  2222   222     


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                        ...|++|++.+...
T Consensus        74 --~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 --QEADIVINATPSGM   87 (135)
T ss_dssp             --HTESEEEE-SSTTS
T ss_pred             --hhCCeEEEecCCCC
Confidence              26799999998653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.05  E-value=2.6e-05  Score=70.46  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +.++|.|+ |++|+.+|..|+++| .+|.+.+|+.+++++..+...    .++...++|+.|.+.+.+++++       .
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~-------~   69 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKD-------F   69 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhc-------C
Confidence            45899999 999999999999999 899999999999887766542    2688999999999988888763       3


Q ss_pred             cEEEEccccCCC
Q 042560          127 DHLVTNAGVVPM  138 (287)
Q Consensus       127 dvli~nag~~~~  138 (287)
                      |++||++.....
T Consensus        70 d~VIn~~p~~~~   81 (389)
T COG1748          70 DLVINAAPPFVD   81 (389)
T ss_pred             CEEEEeCCchhh
Confidence            999999987543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.02  E-value=4.5e-05  Score=60.32  Aligned_cols=77  Identities=27%  Similarity=0.438  Sum_probs=56.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++++++|+|+ |++|.++++.|.+.| .+|.+++|+.++.++..+++....      +..+..+.++.          
T Consensus        16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------   78 (155)
T cd01065          16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG------IAIAYLDLEEL----------   78 (155)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc------cceeecchhhc----------
Confidence            467889999998 899999999999996 789999999888877766653211      12233333322          


Q ss_pred             cCCccEEEEccccCC
Q 042560          123 FGRLDHLVTNAGVVP  137 (287)
Q Consensus       123 ~~~idvli~nag~~~  137 (287)
                      ....|++|++++...
T Consensus        79 ~~~~Dvvi~~~~~~~   93 (155)
T cd01065          79 LAEADLIINTTPVGM   93 (155)
T ss_pred             cccCCEEEeCcCCCC
Confidence            246899999997654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.99  E-value=3.3e-05  Score=70.65  Aligned_cols=76  Identities=22%  Similarity=0.329  Sum_probs=59.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           50 VLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++|.|| |.+|+.+++.|++++-  +|++.+|+.+++++..+.+   ...++...++|+.|.+++.++++       .-|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~l~~~~~-------~~d   69 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---LGDRVEAVQVDVNDPESLAELLR-------GCD   69 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----TTTTEEEEE--TTTHHHHHHHHT-------TSS
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---cccceeEEEEecCCHHHHHHHHh-------cCC
Confidence            689999 9999999999999874  8999999999988877665   33479999999999999888765       449


Q ss_pred             EEEEccccC
Q 042560          128 HLVTNAGVV  136 (287)
Q Consensus       128 vli~nag~~  136 (287)
                      ++||++|..
T Consensus        70 vVin~~gp~   78 (386)
T PF03435_consen   70 VVINCAGPF   78 (386)
T ss_dssp             EEEE-SSGG
T ss_pred             EEEECCccc
Confidence            999999875

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.94  E-value=0.00011  Score=65.46  Aligned_cols=75  Identities=23%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-C-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARR-R-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~-G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .++++|+++||||+|.||..+|++|+++ | .++++++|+..++++..+++..          .|+.   ++.+      
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----------~~i~---~l~~------  211 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----------GKIL---SLEE------  211 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----------ccHH---hHHH------
Confidence            4789999999999999999999999864 5 4899999998887776654421          1222   1222      


Q ss_pred             HhcCCccEEEEccccCC
Q 042560          121 EHFGRLDHLVTNAGVVP  137 (287)
Q Consensus       121 ~~~~~idvli~nag~~~  137 (287)
                       .....|++|+.++...
T Consensus       212 -~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        212 -ALPEADIVVWVASMPK  227 (340)
T ss_pred             -HHccCCEEEECCcCCc
Confidence             2246899999998743

>PRK09620 hypothetical protein; Provisional

Probab=97.91  E-value=2.1e-05  Score=66.50  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCC----------------ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC
Q 042560           45 VAGKVVLITGAS----------------SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        45 ~~~k~alVtGa~----------------~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      ++||+++||+|.                |.+|.++|+.|.++|++|+++++........   .  ........+..|   
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~---~--~~~~~~~~V~s~---   72 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND---I--NNQLELHPFEGI---   72 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc---c--CCceeEEEEecH---
Confidence            479999999987                9999999999999999999887643211100   0  001123333332   


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                       .+..+.+.++.++ ..+|++||.|+...+.+
T Consensus        73 -~d~~~~l~~~~~~-~~~D~VIH~AAvsD~~~  102 (229)
T PRK09620         73 -IDLQDKMKSIITH-EKVDAVIMAAAGSDWVV  102 (229)
T ss_pred             -HHHHHHHHHHhcc-cCCCEEEECccccceec
Confidence             2222233333221 25799999999976554

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.80  E-value=0.00011  Score=64.70  Aligned_cols=80  Identities=23%  Similarity=0.263  Sum_probs=68.6

Q ss_pred             EEEecCCChHHHHHHHHHHH----cCCeEEEEeCChhHHHHHHHHHHhcCCC---eeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           50 VLITGASSGIGKHLAYEYAR----RRARLVLVARRERQLREVADQAELMGSP---FALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~----~G~~vv~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++|.||+|.-|.-+++++.+    .|....+.+||+.++++..+......+.   +..++.+|.+|++++.+.+++.   
T Consensus         8 vVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~---   84 (423)
T KOG2733|consen    8 VVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQA---   84 (423)
T ss_pred             EEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhh---
Confidence            79999999999999999999    7889999999999999998888664421   3348889999999999988754   


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                          .+++|++|..
T Consensus        85 ----~vivN~vGPy   94 (423)
T KOG2733|consen   85 ----RVIVNCVGPY   94 (423)
T ss_pred             ----EEEEeccccc
Confidence                7999999976

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.80  E-value=0.00027  Score=56.73  Aligned_cols=186  Identities=17%  Similarity=0.151  Sum_probs=115.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++.|.||||-.|..++++..++|+.|.++.|+.+++...         ..+...+.|+.|.+++.+.+.       +.|+
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---------~~~~i~q~Difd~~~~a~~l~-------g~Da   65 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---------QGVTILQKDIFDLTSLASDLA-------GHDA   65 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---------ccceeecccccChhhhHhhhc-------CCce
Confidence            577899999999999999999999999999999987543         136688999999998855543       7799


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--------CCCC--hhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--------PPRM--SFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--------~~~~--~~Y  197 (287)
                      +|...|.....      . +.          -.....+++...++..+ .|+++++...+.+-        .|.+  ..|
T Consensus        66 VIsA~~~~~~~------~-~~----------~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~  128 (211)
T COG2910          66 VISAFGAGASD------N-DE----------LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYK  128 (211)
T ss_pred             EEEeccCCCCC------h-hH----------HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHH
Confidence            99998874321      0 11          01222566666666634 78999988776542        2222  235


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC--CcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG--GKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      ..+++..+.+ ..|..+-.  +.-.-+.|.....|--+  .+...++...        .-....---+.+|.|-+++.-+
T Consensus       129 ~~A~~~ae~L-~~Lr~~~~--l~WTfvSPaa~f~PGerTg~yrlggD~ll--------~n~~G~SrIS~aDYAiA~lDe~  197 (211)
T COG2910         129 PEALAQAEFL-DSLRAEKS--LDWTFVSPAAFFEPGERTGNYRLGGDQLL--------VNAKGESRISYADYAIAVLDEL  197 (211)
T ss_pred             HHHHHHHHHH-HHHhhccC--cceEEeCcHHhcCCccccCceEeccceEE--------EcCCCceeeeHHHHHHHHHHHH
Confidence            5556555433 33444422  56666777766655211  1111111000        0001101125788888888877


Q ss_pred             ccC
Q 042560          276 CRG  278 (287)
Q Consensus       276 ~~~  278 (287)
                      .++
T Consensus       198 E~~  200 (211)
T COG2910         198 EKP  200 (211)
T ss_pred             hcc
Confidence            654

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0012  Score=54.89  Aligned_cols=137  Identities=18%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++++|||++|-.|.||.+.+.++|.   +.++.+.                      -.+|+++..+.+++++..     
T Consensus         2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s----------------------kd~DLt~~a~t~~lF~~e-----   54 (315)
T KOG1431|consen    2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS----------------------KDADLTNLADTRALFESE-----   54 (315)
T ss_pred             ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc----------------------ccccccchHHHHHHHhcc-----
Confidence            6899999999999999999999986   3333322                      237999999999999764     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC----------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW----------------  188 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~----------------  188 (287)
                      ++..+||.|+..+---.....+.+-++..+.+|-    +.++.+...=.   ..+++..|.+=+                
T Consensus        55 kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~ind----NVlhsa~e~gv---~K~vsclStCIfPdkt~yPIdEtmvh~g  127 (315)
T KOG1431|consen   55 KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIND----NVLHSAHEHGV---KKVVSCLSTCIFPDKTSYPIDETMVHNG  127 (315)
T ss_pred             CCceeeehHhhhcchhhcCCCchHHHhhcceech----hHHHHHHHhch---hhhhhhcceeecCCCCCCCCCHHHhccC
Confidence            6778888887654221111123333444444332    22222222110   134443333211                


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD  218 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~  218 (287)
                      .|-|.+..|+-+|..+.-..+.++.+++..
T Consensus       128 pphpsN~gYsyAKr~idv~n~aY~~qhg~~  157 (315)
T KOG1431|consen  128 PPHPSNFGYSYAKRMIDVQNQAYRQQHGRD  157 (315)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhCCc
Confidence            123456679999988887779999988754

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=97.75  E-value=0.00053  Score=60.23  Aligned_cols=80  Identities=19%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+|+++++|.+++..+...|++|++++++.++.+... .   .+..    ...|..+.+..+.+.+...  ..+
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~---~g~~----~~~~~~~~~~~~~~~~~~~--~~~  213 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-Q---AGAD----AVFNYRAEDLADRILAATA--GQG  213 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H---cCCC----EEEeCCCcCHHHHHHHHcC--CCc
Confidence            5899999999999999999999999999999999887655442 2   2211    1244454444444433221  136


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++++++|.
T Consensus       214 ~d~vi~~~~~  223 (325)
T cd08253         214 VDVIIEVLAN  223 (325)
T ss_pred             eEEEEECCch
Confidence            9999998863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00023  Score=59.71  Aligned_cols=159  Identities=14%  Similarity=0.064  Sum_probs=104.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH-HHHH----HhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV-ADQA----ELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~-~~~~----~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+++|||-+|-=|.-++.-|+.+|++|.-+-|+.+..... .+++    ....+.....+..|++|...+.+++..+  
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i--  105 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI--  105 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc--
Confidence            46999999999999999999999999998777655543322 2333    2223456788889999999999998876  


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------  189 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------  189 (287)
                         +++-+.|-|+..+..-     +.|-.+-.-++...|.+.++.++..+-.. ++.-.+-.|.+-.+            
T Consensus       106 ---kPtEiYnLaAQSHVkv-----SFdlpeYTAeVdavGtLRlLdAi~~c~l~-~~VrfYQAstSElyGkv~e~PQsE~T  176 (376)
T KOG1372|consen  106 ---KPTEVYNLAAQSHVKV-----SFDLPEYTAEVDAVGTLRLLDAIRACRLT-EKVRFYQASTSELYGKVQEIPQSETT  176 (376)
T ss_pred             ---CchhhhhhhhhcceEE-----EeecccceeeccchhhhhHHHHHHhcCcc-cceeEEecccHhhcccccCCCcccCC
Confidence               5677778777665431     22323334556677888888777654322 22333333333222            


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhC
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~  216 (287)
                      |+...+.|+++|-..-..+-..+..|.
T Consensus       177 PFyPRSPYa~aKmy~~WivvNyREAYn  203 (376)
T KOG1372|consen  177 PFYPRSPYAAAKMYGYWIVVNYREAYN  203 (376)
T ss_pred             CCCCCChhHHhhhhheEEEEEhHHhhc
Confidence            333567899999776555555555553

>PLN00106 malate dehydrogenase

Probab=97.68  E-value=0.00036  Score=62.06  Aligned_cols=150  Identities=15%  Similarity=0.057  Sum_probs=91.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..+++.|+||+|.+|.+++..|+.++.  ++++++.++.  +.....+..... ..  ...++++.+++.+.+       
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~a~Dl~~~~~-~~--~i~~~~~~~d~~~~l-------   84 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGVAADVSHINT-PA--QVRGFLGDDQLGDAL-------   84 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--CeeEchhhhCCc-Cc--eEEEEeCCCCHHHHc-------
Confidence            356899999999999999999997765  7999999772  211112221111 11  223433333333332       


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-------------C
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-------------L  189 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-------------~  189 (287)
                      ...|++|+.||.....      . +.+.+.+..|+..    .+.+.+.+.+.+ .++++++|.-..             .
T Consensus        85 ~~aDiVVitAG~~~~~------g-~~R~dll~~N~~i----~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s  153 (323)
T PLN00106         85 KGADLVIIPAGVPRKP------G-MTRDDLFNINAGI----VKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAG  153 (323)
T ss_pred             CCCCEEEEeCCCCCCC------C-CCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcC
Confidence            4689999999985331      1 3345566666654    455555554433 455555554332             2


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCC
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGD  218 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~  218 (287)
                      +.|....|+.++.-...|-..++.+++-.
T Consensus       154 ~~p~~~viG~~~LDs~Rl~~~lA~~lgv~  182 (323)
T PLN00106        154 VYDPKKLFGVTTLDVVRANTFVAEKKGLD  182 (323)
T ss_pred             CCCcceEEEEecchHHHHHHHHHHHhCCC
Confidence            45667789998866667888888888643

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.67  E-value=0.00017  Score=67.27  Aligned_cols=81  Identities=17%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++|+|+++ +|+++|+.|++.|++|++.+++.....+..+.+...+   +.+...+  +...+   .    . 
T Consensus         1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g---~~~~~~~--~~~~~---~----~-   66 (447)
T PRK02472          1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEG---IKVICGS--HPLEL---L----D-   66 (447)
T ss_pred             CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcC---CEEEeCC--CCHHH---h----c-
Confidence            567899999999976 9999999999999999999987654444444444332   2222211  11111   1    1 


Q ss_pred             cCCccEEEEccccCCC
Q 042560          123 FGRLDHLVTNAGVVPM  138 (287)
Q Consensus       123 ~~~idvli~nag~~~~  138 (287)
                       ..+|++|+++|+...
T Consensus        67 -~~~d~vV~s~gi~~~   81 (447)
T PRK02472         67 -EDFDLMVKNPGIPYT   81 (447)
T ss_pred             -CcCCEEEECCCCCCC
Confidence             148999999998644

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.59  E-value=0.00046  Score=60.30  Aligned_cols=78  Identities=23%  Similarity=0.333  Sum_probs=56.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++|+|+ ||+|++++..|+..| .+|.+++|+.++.+++.+.+....  .+.   .+. +   ..       +
T Consensus       119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~---~~~-~---~~-------~  181 (278)
T PRK00258        119 VDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAE---LDL-E---LQ-------E  181 (278)
T ss_pred             CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--cee---ecc-c---ch-------h
Confidence            3678999999998 899999999999999 699999999998888877664321  011   111 0   11       1


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                      .....|++||+.....
T Consensus       182 ~~~~~DivInaTp~g~  197 (278)
T PRK00258        182 ELADFDLIINATSAGM  197 (278)
T ss_pred             ccccCCEEEECCcCCC
Confidence            1246799999997653

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.58  E-value=0.0007  Score=58.89  Aligned_cols=77  Identities=19%  Similarity=0.309  Sum_probs=56.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..++|+++|+|+ ||+|++++..|++.|++|.+++|+.++.+++.+.+...+.  +.....|     +.         ..
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~--~~~~~~~-----~~---------~~  176 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGE--IQAFSMD-----EL---------PL  176 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCc--eEEechh-----hh---------cc
Confidence            346889999999 6999999999999999999999999888888777654321  2222111     10         11


Q ss_pred             CCccEEEEccccCC
Q 042560          124 GRLDHLVTNAGVVP  137 (287)
Q Consensus       124 ~~idvli~nag~~~  137 (287)
                      ...|++||+.+...
T Consensus       177 ~~~DivInatp~gm  190 (270)
T TIGR00507       177 HRVDLIINATSAGM  190 (270)
T ss_pred             cCccEEEECCCCCC
Confidence            35799999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.56  E-value=0.0017  Score=57.53  Aligned_cols=79  Identities=24%  Similarity=0.335  Sum_probs=57.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++|+|+++++|.+++..+...|+++++++++.++.+.+. .   .+..    ...|..+.+..+.+.+...+  ++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~---~~~~----~~~~~~~~~~~~~~~~~~~~--~~  235 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-E---LGAD----YVIDYRKEDFVREVRELTGK--RG  235 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H---cCCC----eEEecCChHHHHHHHHHhCC--CC
Confidence            5789999999999999999999999999999999887655432 2   2211    22466665555555443322  36


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|++++++|
T Consensus       236 ~d~~i~~~g  244 (342)
T cd08266         236 VDVVVEHVG  244 (342)
T ss_pred             CcEEEECCc
Confidence            999999987

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.41  E-value=0.00095  Score=59.35  Aligned_cols=148  Identities=14%  Similarity=0.050  Sum_probs=86.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++.+++.|+|++|.+|..++..|+.++  .++++++++..  +.....+.....   .....+.+|..+..+.+     
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~--~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l-----   74 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA--PGVAADLSHIDT---PAKVTGYADGELWEKAL-----   74 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC--cccccchhhcCc---CceEEEecCCCchHHHh-----
Confidence            3456689999999999999999999665  48999999322  221112222111   12234555543322222     


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCC-------------C
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAA-------------G  187 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~-------------~  187 (287)
                        ...|++|+++|.....      . +.+.+.+..|+..    ++.+.+.|++.+ .++|+++|.-             .
T Consensus        75 --~gaDvVVitaG~~~~~------~-~tR~dll~~N~~i----~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~  141 (321)
T PTZ00325         75 --RGADLVLICAGVPRKP------G-MTRDDLFNTNAPI----VRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKK  141 (321)
T ss_pred             --CCCCEEEECCCCCCCC------C-CCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhh
Confidence              3679999999974321      1 3344556666544    455555565544 5777777642             2


Q ss_pred             CCCCCCChhhhhhHHHHHH--HHHHHHHHhC
Q 042560          188 WLPPPRMSFYNASKAAKIA--LYETLRVEFG  216 (287)
Q Consensus       188 ~~~~~~~~~Y~asKaal~~--~~~~la~e~~  216 (287)
                      ..+.|....|+.+ . |++  |-..++..++
T Consensus       142 ~sg~p~~~viG~g-~-LDs~R~r~~la~~l~  170 (321)
T PTZ00325        142 AGVYDPRKLFGVT-T-LDVVRARKFVAEALG  170 (321)
T ss_pred             ccCCChhheeech-h-HHHHHHHHHHHHHhC
Confidence            2345666678886 2 554  3345555554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.38  E-value=0.0017  Score=56.55  Aligned_cols=85  Identities=29%  Similarity=0.364  Sum_probs=62.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ....+.+++.++|.|| ||-+++++..|++.|+ +++++.|+.++.+++++.+...+.   .....+..+.+..+     
T Consensus       119 ~~~~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~---~~~~~~~~~~~~~~-----  189 (283)
T COG0169         119 GLPVDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA---AVEAAALADLEGLE-----  189 (283)
T ss_pred             CCCcccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc---cccccccccccccc-----
Confidence            3335668999999999 7999999999999996 799999999999999888865442   11112222222211     


Q ss_pred             HHHhcCCccEEEEccccCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMC  139 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~  139 (287)
                            ..|++||+....-..
T Consensus       190 ------~~dliINaTp~Gm~~  204 (283)
T COG0169         190 ------EADLLINATPVGMAG  204 (283)
T ss_pred             ------ccCEEEECCCCCCCC
Confidence                  469999999776443

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=97.37  E-value=0.0027  Score=50.73  Aligned_cols=159  Identities=18%  Similarity=0.098  Sum_probs=98.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+.++.++|.||+|-.|..+.+++.+.+-  +|+++.|++..-.++        +..+.....|++..++.....    
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at--------~k~v~q~~vDf~Kl~~~a~~~----   81 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT--------DKVVAQVEVDFSKLSQLATNE----   81 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc--------cceeeeEEechHHHHHHHhhh----
Confidence            455778899999999999999999999985  899999975322211        124556667766555443332    


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                         .++|+++++-|......     -.|.+.++ +..+  .+.+++.+    ++++ ..++.+||..+...  ....|--
T Consensus        82 ---qg~dV~FcaLgTTRgka-----Gadgfykv-DhDy--vl~~A~~A----Ke~Gck~fvLvSS~GAd~s--SrFlY~k  144 (238)
T KOG4039|consen   82 ---QGPDVLFCALGTTRGKA-----GADGFYKV-DHDY--VLQLAQAA----KEKGCKTFVLVSSAGADPS--SRFLYMK  144 (238)
T ss_pred             ---cCCceEEEeeccccccc-----ccCceEee-chHH--HHHHHHHH----HhCCCeEEEEEeccCCCcc--cceeeee
Confidence               47899999988653221     11222211 1111  12222222    3333 58999999877633  3556888


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      .|.-++.=+-.|.  +   -++....||++..+...
T Consensus       145 ~KGEvE~~v~eL~--F---~~~~i~RPG~ll~~R~e  175 (238)
T KOG4039|consen  145 MKGEVERDVIELD--F---KHIIILRPGPLLGERTE  175 (238)
T ss_pred             ccchhhhhhhhcc--c---cEEEEecCcceeccccc
Confidence            8876665333222  1   35677899999877665

>PRK06849 hypothetical protein; Provisional

Probab=97.25  E-value=0.0034  Score=57.50  Aligned_cols=84  Identities=18%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +.++++|||++..+|.++++.|.+.|++|++++.+............     ....++..-.+.+...+.+.++.++. +
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d-----~~~~~p~p~~d~~~~~~~L~~i~~~~-~   76 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVD-----GFYTIPSPRWDPDAYIQALLSIVQRE-N   76 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh-----heEEeCCCCCCHHHHHHHHHHHHHHc-C
Confidence            46889999999999999999999999999999998655432222221     12223222334444444444455553 5


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|-....
T Consensus        77 id~vIP~~e~   86 (389)
T PRK06849         77 IDLLIPTCEE   86 (389)
T ss_pred             CCEEEECChH
Confidence            8999988763

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=97.23  E-value=0.0061  Score=67.47  Aligned_cols=178  Identities=11%  Similarity=0.022  Sum_probs=112.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+.++.++|++.+++++.+++.+|.++|..|+++......    .......+ ..+..+...-.|.+++..+++.+....
T Consensus      1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1826 (2582)
T TIGR02813      1752 KQSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSPWVV----SHSASPLA-SAIASVTLGTIDDTSIEAVIKDIEEKT 1826 (2582)
T ss_pred             cccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeeccccc----cccccccc-cccccccccccchHHHHHHHHhhhccc
Confidence            3457888888889999999999999999998877432111    00000000 112233445556778888888887777


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhh-----
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFY-----  197 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y-----  197 (287)
                      +.++.+||-.+....... .... ......-...+...+.+.|++.+.+... .+.++.+++..|..+..+...-     
T Consensus      1827 ~~~~g~i~l~~~~~~~~~-~~~~-~~~~~~~~~~l~~~f~~ak~~~~~l~~~~~~~~~~vsr~~G~~g~~~~~~~~~~~~ 1904 (2582)
T TIGR02813      1827 AQIDGFIHLQPQHKSVAD-KVDA-IELPEAAKQSLMLAFLFAKLLNVKLATNARASFVTVSRIDGGFGYSNGDADSGTQQ 1904 (2582)
T ss_pred             cccceEEEeccccccccc-cccc-cccchhhHHHHHHHHHHHHhhchhhccCCCeEEEEEEecCCccccCCccccccccc
Confidence            889999997765432100 0000 0011111123444566777766655443 3688889998887775432221     


Q ss_pred             ---hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCc
Q 042560          198 ---NASKAAKIALYETLRVEFGGD-IGITIVTPGL  228 (287)
Q Consensus       198 ---~asKaal~~~~~~la~e~~~~-i~v~~i~PG~  228 (287)
                         ....+++.+|+|++++|+..- +|...+.|..
T Consensus      1905 ~~~~~~~a~l~Gl~Ktl~~E~P~~~~r~vDl~~~~ 1939 (2582)
T TIGR02813      1905 VKAELNQAALAGLTKTLNHEWNAVFCRALDLAPKL 1939 (2582)
T ss_pred             cccchhhhhHHHHHHhHHHHCCCCeEEEEeCCCCc
Confidence               345899999999999999766 8888888763

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.16  E-value=0.0017  Score=53.11  Aligned_cols=81  Identities=28%  Similarity=0.303  Sum_probs=50.0

Q ss_pred             CCCCEEEEecCC----------------ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC
Q 042560           45 VAGKVVLITGAS----------------SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        45 ~~~k~alVtGa~----------------~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      ++||+++||+|+                |-.|.++|+.+..+|++|.++..... +..        + ..+..  .++.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~--------p-~~~~~--i~v~s   68 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP--------P-PGVKV--IRVES   68 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------------TTEEE--EE-SS
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc--------c-ccceE--EEecc
Confidence            478899998874                68999999999999999999887642 111        1 12444  44555


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                      .++..+.+.+..+   .-|++|++|++..+.+
T Consensus        69 a~em~~~~~~~~~---~~Di~I~aAAVsDf~p   97 (185)
T PF04127_consen   69 AEEMLEAVKELLP---SADIIIMAAAVSDFRP   97 (185)
T ss_dssp             HHHHHHHHHHHGG---GGSEEEE-SB--SEEE
T ss_pred             hhhhhhhhccccC---cceeEEEecchhheee
Confidence            6665555554443   3499999999986654

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.15  E-value=0.0011  Score=63.13  Aligned_cols=48  Identities=38%  Similarity=0.621  Sum_probs=42.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++
T Consensus       375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            4578999999999 59999999999999999999999988887776654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.13  E-value=0.013  Score=52.46  Aligned_cols=101  Identities=21%  Similarity=0.335  Sum_probs=65.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC--
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG--  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~--  124 (287)
                      |.++||+||+||+|...+.-....|++++++..+.++.+ ..   +..+.+    +..|..+.+    +.+++.+..+  
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~---~~lGAd----~vi~y~~~~----~~~~v~~~t~g~  210 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LL---KELGAD----HVINYREED----FVEQVRELTGGK  210 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HH---HhcCCC----EEEcCCccc----HHHHHHHHcCCC
Confidence            999999999999999988888888988777777776654 32   333332    223333333    3334433332  


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      ++|+++...|...                           ....+..+.+ +|+++.++...+
T Consensus       211 gvDvv~D~vG~~~---------------------------~~~~l~~l~~-~G~lv~ig~~~g  245 (326)
T COG0604         211 GVDVVLDTVGGDT---------------------------FAASLAALAP-GGRLVSIGALSG  245 (326)
T ss_pred             CceEEEECCCHHH---------------------------HHHHHHHhcc-CCEEEEEecCCC
Confidence            5999999888511                           1123334444 489999888775

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.12  E-value=0.014  Score=54.99  Aligned_cols=112  Identities=20%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-------------H
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-------------E  110 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------------~  110 (287)
                      ...+.+++|.|+ |.+|+..+.-+...|++|++++++.++++...+ +   +   ..++..|..+.             +
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l---G---A~~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M---G---AEFLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---C---CeEEEeccccccccccchhhhcchh
Confidence            456899999999 899999999999999999999999988764433 2   2   22232333221             1


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcC
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVAS  184 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS  184 (287)
                      ..++..+...+..+..|++|.++|......                    +..+.+..+..|++ +|+||.++.
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~a--------------------P~lit~~~v~~mkp-GgvIVdvg~  286 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPA--------------------PKLITAEMVASMKP-GSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccC--------------------cchHHHHHHHhcCC-CCEEEEEcc
Confidence            111222222333357999999999743211                    11223555555653 677887765

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.11  E-value=0.0035  Score=51.99  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=42.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      ...+++||+++|.|.+ .+|+.+++.|.+.|++|++.+++.+++++..+.
T Consensus        22 ~~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          22 GTDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            3567899999999995 899999999999999999999998877666553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.09  E-value=0.0035  Score=55.95  Aligned_cols=114  Identities=19%  Similarity=0.110  Sum_probs=64.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC-------CeEEEEeCChhH--HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRR-------ARLVLVARRERQ--LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G-------~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +++||||+|.+|.+++..|+..+       .++++++++...  ++.....+...    ......|+....+..+.    
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~----~~~~~~~~~~~~~~~~~----   75 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC----AFPLLKSVVATTDPEEA----   75 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc----cccccCCceecCCHHHH----
Confidence            58999999999999999999854       589999996532  22111111100    00111233222222222    


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVAS  184 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS  184 (287)
                         ....|++||.||.....      . +.-.+.++.|    ..+.+.+.+.+.+.   ++.++++|.
T Consensus        76 ---l~~aDiVI~tAG~~~~~------~-~~R~~l~~~N----~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          76 ---FKDVDVAILVGAMPRKE------G-MERKDLLKAN----VKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             ---hCCCCEEEEeCCcCCCC------C-CCHHHHHHHH----HHHHHHHHHHHHHhCCCCeEEEEecC
Confidence               24689999999985321      1 1113344444    45566666666554   255666664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.08  E-value=0.0081  Score=53.23  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=69.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcC---CCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMG---SPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++.|.|+ |++|.+++..|+..|  .++++++++.+..+.....+....   ....... .  .+.+.+          
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~--~~~~~l----------   66 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-A--GDYSDC----------   66 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-c--CCHHHh----------
Confidence            36788897 899999999999999  489999999888777766664321   1112221 1  222211          


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVAS  184 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS  184 (287)
                       ..-|++|+++|.....   .    ++=.+.+.    ....+.+...+.+++..  +.++++|.
T Consensus        67 -~~aDIVIitag~~~~~---g----~~R~dll~----~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          67 -KDADIVVITAGAPQKP---G----ETRLDLLE----KNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             -CCCCEEEEccCCCCCC---C----CCHHHHHH----HHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence             3679999999874321   1    11112223    34456666666665543  67777763

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.05  E-value=0.0046  Score=54.13  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=55.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|.++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++.+.+....  .+..    +...++...       .
T Consensus       122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~----~~~~~~~~~-------~  187 (282)
T TIGR01809       122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITR----LEGDSGGLA-------I  187 (282)
T ss_pred             ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--ccee----ccchhhhhh-------c
Confidence            467899999988 8999999999999997 79999999998888877664321  1111    111111111       1


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                      ....|++||+....
T Consensus       188 ~~~~DiVInaTp~g  201 (282)
T TIGR01809       188 EKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCCEEEECCCCC
Confidence            13579999998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.03  E-value=0.0071  Score=52.91  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +.++|.++|.|| ||-|++++..|++.|+ ++.++.|+.++.+++.+.+....+.... ...|   ..+..+..      
T Consensus       124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~-~~~~---~~~~~~~~------  192 (283)
T PRK14027        124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAV-VGVD---ARGIEDVI------  192 (283)
T ss_pred             CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceE-EecC---HhHHHHHH------
Confidence            456899999998 8999999999999998 7889999999988888776543221111 1122   21111111      


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                       ...|++||+....
T Consensus       193 -~~~divINaTp~G  205 (283)
T PRK14027        193 -AAADGVVNATPMG  205 (283)
T ss_pred             -hhcCEEEEcCCCC
Confidence             2479999998654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.01  E-value=0.0067  Score=53.14  Aligned_cols=50  Identities=22%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM   94 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~   94 (287)
                      ++++++++|.|+ ||.|++++..|++.|+ +|.+++|+.++.+++.+.+...
T Consensus       124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~  174 (284)
T PRK12549        124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR  174 (284)
T ss_pred             CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence            567899999998 7899999999999998 7999999999998888877543

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.99  E-value=0.016  Score=49.46  Aligned_cols=104  Identities=22%  Similarity=0.288  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.+++|+|+++ +|.+++..+...|.+|++++++.++.+.. .   ..+..    ...|..+.+..+.+.   ....++
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~---~~g~~----~~~~~~~~~~~~~~~---~~~~~~  201 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-K---ELGAD----HVIDYKEEDLEEELR---LTGGGG  201 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-H---HhCCc----eeccCCcCCHHHHHH---HhcCCC
Confidence            688999999998 99999999888999999999987665443 2   22211    112333333333332   222357


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW  188 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~  188 (287)
                      +|++++++|..                          ...+..+..++ ..|+++.++.....
T Consensus       202 ~d~vi~~~~~~--------------------------~~~~~~~~~l~-~~G~~v~~~~~~~~  237 (271)
T cd05188         202 ADVVIDAVGGP--------------------------ETLAQALRLLR-PGGRIVVVGGTSGG  237 (271)
T ss_pred             CCEEEECCCCH--------------------------HHHHHHHHhcc-cCCEEEEEccCCCC
Confidence            99999988741                          12333444454 36899988876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.96  E-value=0.0042  Score=57.28  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++++++|.|+ ||+|+++++.|++.|+ ++.++.|+.++.+++.+++..     ...+     ..++..+.      
T Consensus       177 ~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~-----~~~~-----~~~~l~~~------  239 (414)
T PRK13940        177 DNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN-----ASAH-----YLSELPQL------  239 (414)
T ss_pred             cCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC-----CeEe-----cHHHHHHH------
Confidence            4578999999999 9999999999999996 799999998887777665421     1111     12222222      


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                       ...-|++|++.+...
T Consensus       240 -l~~aDiVI~aT~a~~  254 (414)
T PRK13940        240 -IKKADIIIAAVNVLE  254 (414)
T ss_pred             -hccCCEEEECcCCCC
Confidence             245799999998643

>PRK14968 putative methyltransferase; Provisional

Probab=96.96  E-value=0.015  Score=47.13  Aligned_cols=122  Identities=22%  Similarity=0.157  Sum_probs=72.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCe--eEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF--ALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++++-.|++.|.   ++..+++++.+++.++++++..+...+.+...+...  +.++.+|..+.         ..+ 
T Consensus        22 ~~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~-   88 (188)
T PRK14968         22 KKGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG-   88 (188)
T ss_pred             cCCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence            367789999988776   566666668999999999988877777665544222  77778886442         111 


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhh---HHHHHHHHHHHHhcCCCEEEEEc
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG---SAYGTYFAIPYLKQTKGKIIVVA  183 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~---~~~l~~~~~~~l~~~~g~iv~is  183 (287)
                       ...|.++.|..+....+.... . +.+...+.....+   .-.+.+.+.+.|++ +|.++++.
T Consensus        89 -~~~d~vi~n~p~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~-gG~~~~~~  148 (188)
T PRK14968         89 -DKFDVILFNPPYLPTEEEEEW-D-DWLNYALSGGKDGREVIDRFLDEVGRYLKP-GGRILLLQ  148 (188)
T ss_pred             -cCceEEEECCCcCCCCchhhh-h-hhhhhhhccCcChHHHHHHHHHHHHHhcCC-CeEEEEEE
Confidence             268999999876543221111 0 1112122222112   22355666666765 56665543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.94  E-value=0.005  Score=55.11  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|..++......|++|+.++++.++.+.+.+.+   +.+    ...|..+.++..+.+.+...  ++
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~----~vi~~~~~~~~~~~i~~~~~--~g  221 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD----DAFNYKEEPDLDAALKRYFP--NG  221 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc----eeEEcCCcccHHHHHHHhCC--CC
Confidence            6899999999999999998887888999999998887755543322   211    11232222233333333222  46


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.+.|
T Consensus       222 vd~v~d~~g  230 (338)
T cd08295         222 IDIYFDNVG  230 (338)
T ss_pred             cEEEEECCC
Confidence            899888776

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.89  E-value=0.011  Score=53.76  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +.++.++|.|+ |.+|+..++.+.+.|++|++++|+.++++......    +..   +..+..+.+.+.+.+       .
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~----g~~---v~~~~~~~~~l~~~l-------~  229 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF----GGR---IHTRYSNAYEIEDAV-------K  229 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc----Cce---eEeccCCHHHHHHHH-------c
Confidence            56778999988 79999999999999999999999988766544332    111   223445555544433       3


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ..|++|++++.
T Consensus       230 ~aDvVI~a~~~  240 (370)
T TIGR00518       230 RADLLIGAVLI  240 (370)
T ss_pred             cCCEEEEcccc
Confidence            57999999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.86  E-value=0.007  Score=52.95  Aligned_cols=80  Identities=23%  Similarity=0.292  Sum_probs=55.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++|+|+++++|.+++..+...|+++++++++.+..+.. +.+   +..    ...|..+.+..+++.+.. . .++
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~---g~~----~~~~~~~~~~~~~~~~~~-~-~~~  208 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL---GAD----VAINYRTEDFAEEVKEAT-G-GRG  208 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc---CCC----EEEeCCchhHHHHHHHHh-C-CCC
Confidence            578999999999999999999999999999999987765544 222   211    223444433333333222 1 146


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++++++|.
T Consensus       209 ~d~vi~~~g~  218 (323)
T cd05276         209 VDVILDMVGG  218 (323)
T ss_pred             eEEEEECCch
Confidence            9999999884

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.86  E-value=0.017  Score=45.10  Aligned_cols=110  Identities=21%  Similarity=0.138  Sum_probs=69.2

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|.||+|.+|.+++..|...+.  ++++++++.+..+....+++..   ...+.....   .+.+.+           
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~-----------   67 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEAL-----------   67 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGGG-----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cccccc-----------
Confidence            578999999999999999999875  7999999988777666555432   222222222   333332           


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ..-|++|..+|.....      . ++-.+.++.|    ..+.+.+.+.+.+..  +.++.+|
T Consensus        68 ~~aDivvitag~~~~~------g-~sR~~ll~~N----~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   68 KDADIVVITAGVPRKP------G-MSRLDLLEAN----AKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             TTESEEEETTSTSSST------T-SSHHHHHHHH----HHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             ccccEEEEeccccccc------c-ccHHHHHHHh----HhHHHHHHHHHHHhCCccEEEEeC
Confidence            3679999999974321      1 2222233433    455566666555432  6666665

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.79  E-value=0.0078  Score=52.78  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE   86 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~   86 (287)
                      .++.|++++|.|. |++|+++++.|...|++|.+.+|+.++.+.
T Consensus       147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR  189 (287)
T ss_pred             CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4778999999999 679999999999999999999999876543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.79  E-value=0.0071  Score=54.51  Aligned_cols=80  Identities=15%  Similarity=0.176  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.||+|++|..++......|++|+.++++.++.+.+.+++   +.+    ...|-.+.+...+.+.+...  ++
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~----~vi~~~~~~~~~~~i~~~~~--~g  228 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFD----EAFNYKEEPDLDAALKRYFP--EG  228 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCC----EEEECCCcccHHHHHHHHCC--CC
Confidence            6899999999999999998888888999999988887755443222   221    11233322233333333222  36


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.++|
T Consensus       229 vD~v~d~vG  237 (348)
T PLN03154        229 IDIYFDNVG  237 (348)
T ss_pred             cEEEEECCC
Confidence            899998877

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.76  E-value=0.029  Score=52.88  Aligned_cols=85  Identities=19%  Similarity=0.111  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC-------------CH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS-------------KV  109 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------------~~  109 (287)
                      -...+.+++|.|+ |.+|...+..+...|++|++++++.++++...+ +   +   ..++..|..             +.
T Consensus       160 g~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l---G---a~~v~v~~~e~g~~~~gYa~~~s~  231 (511)
T TIGR00561       160 GKVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M---G---AEFLELDFKEEGGSGDGYAKVMSE  231 (511)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---C---CeEEeccccccccccccceeecCH
Confidence            3556789999997 899999999999999999999999887554332 2   2   233344432             23


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEcccc
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~  135 (287)
                      +..++..+...++....|++|+++-+
T Consensus       232 ~~~~~~~~~~~e~~~~~DIVI~Tali  257 (511)
T TIGR00561       232 EFIAAEMELFAAQAKEVDIIITTALI  257 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECccc
Confidence            44444455555566789999999944

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.75  E-value=0.013  Score=51.47  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh---hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE---RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .++++|+++|.|| ||-+++++..|+..|+ ++.++.|+.   ++.+++.+.+.......+..  .++.+.+.+.     
T Consensus       120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~-----  191 (288)
T PRK12749        120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDLADQQAFA-----  191 (288)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--echhhhhhhh-----
Confidence            4568899999998 5669999999999997 799999985   46666666553322111222  1221111111     


Q ss_pred             HHHhcCCccEEEEccccC
Q 042560          119 TMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~  136 (287)
                        +.....|++||+....
T Consensus       192 --~~~~~aDivINaTp~G  207 (288)
T PRK12749        192 --EALASADILTNGTKVG  207 (288)
T ss_pred             --hhcccCCEEEECCCCC
Confidence              1224679999987543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.72  E-value=0.0087  Score=53.17  Aligned_cols=80  Identities=14%  Similarity=0.240  Sum_probs=53.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|..++......|++|+.++++.++.+.+. +   .+.+    ...|..+.+...+..+....  ++
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~-~---lGa~----~vi~~~~~~~~~~~~~~~~~--~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK-K---LGFD----VAFNYKTVKSLEETLKKASP--DG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H---cCCC----EEEeccccccHHHHHHHhCC--CC
Confidence            5889999999999999998877788999999998877655442 2   2321    12233332333343333322  36


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.+.|.
T Consensus       208 vdvv~d~~G~  217 (325)
T TIGR02825       208 YDCYFDNVGG  217 (325)
T ss_pred             eEEEEECCCH
Confidence            8999888763

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.70  E-value=0.011  Score=52.40  Aligned_cols=75  Identities=25%  Similarity=0.386  Sum_probs=51.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.+++|+||++++|.++++.+...|++|+++.++.+..+..    ...+..  ..  .|.   ++..+.   + .+..+
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~----~~~~~~--~~--~~~---~~~~~~---~-~~~~~  226 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL----KELGAD--YV--IDG---SKFSED---V-KKLGG  226 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH----HHcCCc--EE--Eec---HHHHHH---H-HhccC
Confidence            578999999999999999999999999999999887665443    222211  11  122   112222   2 22247


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++++++|.
T Consensus       227 ~d~v~~~~g~  236 (332)
T cd08259         227 ADVVIELVGS  236 (332)
T ss_pred             CCEEEECCCh
Confidence            9999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.66  E-value=0.037  Score=49.26  Aligned_cols=115  Identities=14%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ++-+++++.|+|+ |.+|.+++..|+..|.  ++++++++.+.++.....+.....  .++... .  .+.+.       
T Consensus         2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~-------   70 (315)
T PRK00066          2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD-------   70 (315)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH-------
Confidence            3446789999998 9999999999999987  799999998887766666644321  122222 1  22221       


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                          +..-|++|..+|.....   .    +.-.+.+..    ...+.+.+.+.+.+.  ++.++++|
T Consensus        71 ----~~~adivIitag~~~k~---g----~~R~dll~~----N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         71 ----CKDADLVVITAGAPQKP---G----ETRLDLVEK----NLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             ----hCCCCEEEEecCCCCCC---C----CCHHHHHHH----HHHHHHHHHHHHHHhCCCeEEEEcc
Confidence                13679999999974321   1    111123333    345556666666553  36777766

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.66  E-value=0.0054  Score=52.79  Aligned_cols=75  Identities=13%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|+|||+- |+.++++|.++|++|+.+.++....+...+    .+   ...+..+..|.+++.+++++     .++|+
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~----~g---~~~v~~g~l~~~~l~~~l~~-----~~i~~   68 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI----HQ---ALTVHTGALDPQELREFLKR-----HSIDI   68 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc----cC---CceEEECCCCHHHHHHHHHh-----cCCCE
Confidence            5899999998 999999999999999999888765433221    11   22344666677776666543     37899


Q ss_pred             EEEccccC
Q 042560          129 LVTNAGVV  136 (287)
Q Consensus       129 li~nag~~  136 (287)
                      +|..+...
T Consensus        69 VIDAtHPf   76 (256)
T TIGR00715        69 LVDATHPF   76 (256)
T ss_pred             EEEcCCHH
Confidence            99888754

This enzyme was found to be a monomer by gel filtration.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.65  E-value=0.021  Score=51.33  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=56.4

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh---------------------hHHHHHHHHHHhc-CCCe
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE---------------------RQLREVADQAELM-GSPF   98 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~---------------------~~~~~~~~~~~~~-~~~~   98 (287)
                      ...+++++++|.|+ ||+|..+++.|++.|. ++.++|++.                     .+.+.+.+.++.. +..+
T Consensus        19 Q~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~   97 (338)
T PRK12475         19 QRKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE   97 (338)
T ss_pred             HHhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence            45678899999998 7899999999999998 888888863                     2344445555553 3445


Q ss_pred             eEEEeecCCCHHHHHHHHHHHHHhcCCccEEEEcc
Q 042560           99 ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA  133 (287)
Q Consensus        99 ~~~~~~D~~~~~~v~~~~~~~~~~~~~idvli~na  133 (287)
                      +..+..|++ .+.+++++       ...|++|.+.
T Consensus        98 i~~~~~~~~-~~~~~~~~-------~~~DlVid~~  124 (338)
T PRK12475         98 IVPVVTDVT-VEELEELV-------KEVDLIIDAT  124 (338)
T ss_pred             EEEEeccCC-HHHHHHHh-------cCCCEEEEcC
Confidence            666666765 33333332       2457766655

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.65  E-value=0.011  Score=52.97  Aligned_cols=79  Identities=11%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +.+++|+||+|++|.+++......|+ +|+.++++.++.+.+.+++   +.+.    ..|..+ +++.+.+.+...  ++
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~~----vi~~~~-~~~~~~i~~~~~--~g  224 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFDA----AINYKT-DNVAERLRELCP--EG  224 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCcE----EEECCC-CCHHHHHHHHCC--CC
Confidence            38999999999999999887777899 7999988887765544433   2211    123222 223333333322  46


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       225 vd~vid~~g~  234 (345)
T cd08293         225 VDVYFDNVGG  234 (345)
T ss_pred             ceEEEECCCc
Confidence            9999988763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=96.61  E-value=0.0079  Score=50.33  Aligned_cols=149  Identities=23%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHc-CC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARR-RA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~-G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +.+...++|||+-|-+|..+|+.|-.+ |. .|++.+-.+...     .....    --++..|+-|.+++++++-.   
T Consensus        41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~-----~V~~~----GPyIy~DILD~K~L~eIVVn---  108 (366)
T KOG2774|consen   41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPA-----NVTDV----GPYIYLDILDQKSLEEIVVN---  108 (366)
T ss_pred             cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCch-----hhccc----CCchhhhhhccccHHHhhcc---
Confidence            345678999999999999999998765 66 455554332221     11111    22466899999888877642   


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC-CC------CCC--
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-WL------PPP--  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~-~~------~~~--  192 (287)
                        .+||-+||-.+..+.-.     . ...--...+|+.|..++++.+..+    + --+|+-|.-| +.      |.|  
T Consensus       109 --~RIdWL~HfSALLSAvG-----E-~NVpLA~~VNI~GvHNil~vAa~~----k-L~iFVPSTIGAFGPtSPRNPTPdl  175 (366)
T KOG2774|consen  109 --KRIDWLVHFSALLSAVG-----E-TNVPLALQVNIRGVHNILQVAAKH----K-LKVFVPSTIGAFGPTSPRNPTPDL  175 (366)
T ss_pred             --cccceeeeHHHHHHHhc-----c-cCCceeeeecchhhhHHHHHHHHc----C-eeEeecccccccCCCCCCCCCCCe
Confidence              48999999877543321     1 233346788999988888776443    2 3345444433 32      222  


Q ss_pred             ----CChhhhhhHHHHHHHHHHHHHHhCC
Q 042560          193 ----RMSFYNASKAAKIALYETLRVEFGG  217 (287)
Q Consensus       193 ----~~~~Y~asKaal~~~~~~la~e~~~  217 (287)
                          ....|+.||.-.+-+-+.+...++-
T Consensus       176 tIQRPRTIYGVSKVHAEL~GEy~~hrFg~  204 (366)
T KOG2774|consen  176 TIQRPRTIYGVSKVHAELLGEYFNHRFGV  204 (366)
T ss_pred             eeecCceeechhHHHHHHHHHHHHhhcCc
Confidence                2456999999999999999988874

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.59  E-value=0.041  Score=42.42  Aligned_cols=78  Identities=23%  Similarity=0.360  Sum_probs=54.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC-------------------hhHHHHHHHHHHh-cCCCeeEEEeec
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR-------------------ERQLREVADQAEL-MGSPFALAIPAD  105 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~-~~~~~~~~~~~D  105 (287)
                      +++++|.|+ ||+|..+++.|++.|. ++.++|..                   ..+.+.+.+.++. .+..++..+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            567888888 8999999999999998 78888764                   2234555555654 345567777777


Q ss_pred             CCCHHHHHHHHHHHHHhcCCccEEEEcc
Q 042560          106 VSKVEDCKHFVDVTMEHFGRLDHLVTNA  133 (287)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~~~idvli~na  133 (287)
                      + +++...++++       ..|++|.+.
T Consensus        81 ~-~~~~~~~~~~-------~~d~vi~~~  100 (135)
T PF00899_consen   81 I-DEENIEELLK-------DYDIVIDCV  100 (135)
T ss_dssp             C-SHHHHHHHHH-------TSSEEEEES
T ss_pred             c-cccccccccc-------CCCEEEEec
Confidence            7 3444444442       568888765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.57  E-value=0.29  Score=41.79  Aligned_cols=143  Identities=22%  Similarity=0.289  Sum_probs=91.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|--|.||.|..++..+-..|+.++.+..+.++.+.+.+    ++.    -+..|-+.++-+++..+-...  .+
T Consensus       146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ake----nG~----~h~I~y~~eD~v~~V~kiTng--KG  215 (336)
T KOG1197|consen  146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKE----NGA----EHPIDYSTEDYVDEVKKITNG--KG  215 (336)
T ss_pred             CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHh----cCC----cceeeccchhHHHHHHhccCC--CC
Confidence            68999999999999999999999999999999888777654333    222    245677776666555443222  36


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC--------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP--------------  191 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~--------------  191 (287)
                      +|+++-..|.            +.+.               .-+..++ ..|.+|..+-.++..+.              
T Consensus       216 Vd~vyDsvG~------------dt~~---------------~sl~~Lk-~~G~mVSfG~asgl~~p~~l~~ls~k~l~lv  267 (336)
T KOG1197|consen  216 VDAVYDSVGK------------DTFA---------------KSLAALK-PMGKMVSFGNASGLIDPIPLNQLSPKALQLV  267 (336)
T ss_pred             ceeeeccccc------------hhhH---------------HHHHHhc-cCceEEEeccccCCCCCeehhhcChhhhhhc
Confidence            8888777764            1111               1122333 46888887766665432              


Q ss_pred             -CCChhhhhhHHHHHHHHHHHHHHhCCC---eEEEEEeC
Q 042560          192 -PRMSFYNASKAAKIALYETLRVEFGGD---IGITIVTP  226 (287)
Q Consensus       192 -~~~~~Y~asKaal~~~~~~la~e~~~~---i~v~~i~P  226 (287)
                       |....|-....-+..++..+-.++...   ++++.+.|
T Consensus       268 rpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~yp  306 (336)
T KOG1197|consen  268 RPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYP  306 (336)
T ss_pred             cHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecc
Confidence             223446666666666555555554432   67776665

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.0076  Score=52.90  Aligned_cols=78  Identities=17%  Similarity=0.143  Sum_probs=60.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ..-.+|-||+|--|.-+|++|+++|.+..+.+||..+++.+.+.+..+    ...+  ++.+++.+++.+       .+.
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~----~~~~--p~~~p~~~~~~~-------~~~   72 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPE----AAVF--PLGVPAALEAMA-------SRT   72 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCcc----cccc--CCCCHHHHHHHH-------hcc
Confidence            345899999999999999999999999999999999999888777332    2233  333355544444       367


Q ss_pred             cEEEEccccCC
Q 042560          127 DHLVTNAGVVP  137 (287)
Q Consensus       127 dvli~nag~~~  137 (287)
                      ++|+||+|...
T Consensus        73 ~VVlncvGPyt   83 (382)
T COG3268          73 QVVLNCVGPYT   83 (382)
T ss_pred             eEEEecccccc
Confidence            99999999763

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.55  E-value=0.12  Score=44.89  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ...+++..++|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus        25 ~~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         25 LQLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HHHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45668888999987 7999999999999994 88888765

>cd00704 MDH Malate dehydrogenase

Probab=96.54  E-value=0.016  Score=51.76  Aligned_cols=109  Identities=21%  Similarity=0.146  Sum_probs=64.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHH--H--HH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA-------RLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDC--K--HF  115 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v--~--~~  115 (287)
                      ++.|+||+|.+|..++..|+..|.       ++++.++++  +.++               ....|+.|....  .  ..
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~---------------g~~~Dl~d~~~~~~~~~~i   66 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE---------------GVVMELQDCAFPLLKGVVI   66 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc---------------eeeeehhhhcccccCCcEE
Confidence            579999999999999999998663       499999976  3322               233344333100  0  00


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--C-CEEEEEc
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--K-GKIIVVA  183 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~-g~iv~is  183 (287)
                      .....+.....|++|+.||.....      . +.-.+.+.    ....+.+.+.+.+.+.  + +.++++|
T Consensus        67 ~~~~~~~~~~aDiVVitAG~~~~~------g-~tR~dll~----~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          67 TTDPEEAFKDVDVAILVGAFPRKP------G-MERADLLR----KNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             ecChHHHhCCCCEEEEeCCCCCCc------C-CcHHHHHH----HhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            011122335789999999974321      1 11122333    3456777777777654  2 4555655

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.53  E-value=0.031  Score=47.28  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC-------------------hhHHHHHHHHHHhcC-CCeeEE
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR-------------------ERQLREVADQAELMG-SPFALA  101 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~-~~~~~~  101 (287)
                      .++++++++|.|+ ||+|..+++.|++.|. ++.++|..                   ..+.+.+.+.++..+ ..++..
T Consensus        17 ~~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4667889999996 8999999999999998 67777543                   223444555555533 335556


Q ss_pred             EeecCCCHHHHHHHHHHHHHhcCCccEEEEccc
Q 042560          102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG  134 (287)
Q Consensus       102 ~~~D~~~~~~v~~~~~~~~~~~~~idvli~nag  134 (287)
                      +..+++ .+...+++       ...|++|.+..
T Consensus        96 ~~~~i~-~~~~~~~~-------~~~DvVi~~~d  120 (228)
T cd00757          96 YNERLD-AENAEELI-------AGYDLVLDCTD  120 (228)
T ss_pred             ecceeC-HHHHHHHH-------hCCCEEEEcCC
Confidence            555553 23333332       24688777653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.51  E-value=0.014  Score=49.41  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      +.++|.|+ |-.|..+|+.|.+.|++|++++++++..++..+..     .....+.+|-+|++.++++-      ....|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~~~L~~ag------i~~aD   68 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-----LDTHVVIGDATDEDVLEEAG------IDDAD   68 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-----cceEEEEecCCCHHHHHhcC------CCcCC
Confidence            35677777 78999999999999999999999999987744421     13777889999887776651      12567


Q ss_pred             EEEEcccc
Q 042560          128 HLVTNAGV  135 (287)
Q Consensus       128 vli~nag~  135 (287)
                      ++|-..|.
T Consensus        69 ~vva~t~~   76 (225)
T COG0569          69 AVVAATGN   76 (225)
T ss_pred             EEEEeeCC
Confidence            77766664

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.51  E-value=0.11  Score=44.14  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      .+++.+++|.|. ||+|..+++.|++.|. ++.++|..
T Consensus         8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            457788999988 7999999999999998 78888765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.48  E-value=0.039  Score=45.79  Aligned_cols=38  Identities=29%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..++++++++|.|+ ||+|..+++.|++.|. ++.++|++
T Consensus        16 q~kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        16 QQRLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHHhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence            35678899999996 7999999999999998 88888876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.46  E-value=0.0095  Score=47.90  Aligned_cols=42  Identities=33%  Similarity=0.472  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL   84 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~   84 (287)
                      .++.||+++|.|++.-.|..+++.|.++|++|.++.|+.+++
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l   81 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL   81 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH
Confidence            578999999999976689999999999999999999985443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.43  E-value=0.024  Score=52.97  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |.+.+|+++|+|.+ ++|.++|+.|+++|++|.+.+.+.....  .++++... ..+.+...+.. ..    ..      
T Consensus         1 ~~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~~~~--~~~l~~~~-~gi~~~~g~~~-~~----~~------   65 (445)
T PRK04308          1 MTFQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELKPER--VAQIGKMF-DGLVFYTGRLK-DA----LD------   65 (445)
T ss_pred             CCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCCchh--HHHHhhcc-CCcEEEeCCCC-HH----HH------
Confidence            44678999999986 9999999999999999999987654311  12232211 11333332211 11    11      


Q ss_pred             cCCccEEEEccccCCC
Q 042560          123 FGRLDHLVTNAGVVPM  138 (287)
Q Consensus       123 ~~~idvli~nag~~~~  138 (287)
                       ...|.+|..+|+.+.
T Consensus        66 -~~~d~vv~spgi~~~   80 (445)
T PRK04308         66 -NGFDILALSPGISER   80 (445)
T ss_pred             -hCCCEEEECCCCCCC
Confidence             257999999998643

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=96.43  E-value=0.0043  Score=42.30  Aligned_cols=38  Identities=32%  Similarity=0.446  Sum_probs=23.5

Q ss_pred             CCCCC-CEEEEecCCChHHHH--HHHHHHHcCCeEEEEeCCh
Q 042560           43 EDVAG-KVVLITGASSGIGKH--LAYEYARRRARLVLVARRE   81 (287)
Q Consensus        43 ~~~~~-k~alVtGa~~giG~a--ia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+.| |++||+|+|+|.|++  |+..| ..|++.+-++...
T Consensus        34 ~~~~GpK~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fEk   74 (78)
T PF12242_consen   34 GKINGPKKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFEK   74 (78)
T ss_dssp             ---TS-SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE---
T ss_pred             CCCCCCceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeecc
Confidence            33355 899999999999999  55555 6678877776543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.39  E-value=0.052  Score=46.49  Aligned_cols=38  Identities=26%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ...+++++++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus        27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35678899999999 9999999999999997 77787764

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.38  E-value=0.029  Score=50.57  Aligned_cols=82  Identities=21%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      --+|+.+||.||+||.|.+.+.-....|+..+++.++.++.+ +   .+..+.+    ...|..+++-+++..+..   .
T Consensus       155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-l---~k~lGAd----~vvdy~~~~~~e~~kk~~---~  223 (347)
T KOG1198|consen  155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-L---VKKLGAD----EVVDYKDENVVELIKKYT---G  223 (347)
T ss_pred             cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-H---HHHcCCc----EeecCCCHHHHHHHHhhc---C
Confidence            336889999999999999999888888965555555555433 2   2233322    345767644443333222   5


Q ss_pred             CCccEEEEccccC
Q 042560          124 GRLDHLVTNAGVV  136 (287)
Q Consensus       124 ~~idvli~nag~~  136 (287)
                      +++|+++-++|..
T Consensus       224 ~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  224 KGVDVVLDCVGGS  236 (347)
T ss_pred             CCccEEEECCCCC
Confidence            6899999999973

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.38  E-value=0.071  Score=47.57  Aligned_cols=146  Identities=18%  Similarity=0.083  Sum_probs=89.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCChhH--HHHHHHHHHhcC---CCeeEEEeecCCCHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-------RLVLVARRERQ--LREVADQAELMG---SPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~~~--~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~  114 (287)
                      .+++.|+||+|.+|.+++..|+.+|.       ++++.+.++..  ++..+..+....   ..++..   .-.+.+    
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i---~~~~~~----   74 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI---TDDPNV----   74 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE---ecCcHH----
Confidence            35789999999999999999998875       69999985432  333333332211   001111   111111    


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCC----
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAG----  187 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~----  187 (287)
                             ....-|++|.+||.....   .    +.=.+.+.    ....+.+.+.+.+.+.   .+.++++|.-.-    
T Consensus        75 -------~~~daDivvitaG~~~k~---g----~tR~dll~----~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~  136 (322)
T cd01338          75 -------AFKDADWALLVGAKPRGP---G----MERADLLK----ANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNAL  136 (322)
T ss_pred             -------HhCCCCEEEEeCCCCCCC---C----CcHHHHHH----HHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHH
Confidence                   124679999999974321   1    11112333    3446677777776543   355666653211    


Q ss_pred             ----CCC-CCCChhhhhhHHHHHHHHHHHHHHhCC
Q 042560          188 ----WLP-PPRMSFYNASKAAKIALYETLRVEFGG  217 (287)
Q Consensus       188 ----~~~-~~~~~~Y~asKaal~~~~~~la~e~~~  217 (287)
                          ..+ .|....|+.++.--..|...+++.++-
T Consensus       137 ~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv  171 (322)
T cd01338         137 IAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGV  171 (322)
T ss_pred             HHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCc
Confidence                122 566778999999999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.37  E-value=0.024  Score=50.52  Aligned_cols=73  Identities=21%  Similarity=0.309  Sum_probs=52.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+|++ |+|...+.-....|++|++.+|++++++...+.    +.+    +..|-+|++..+++.+       .
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GAd----~~i~~~~~~~~~~~~~-------~  229 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GAD----HVINSSDSDALEAVKE-------I  229 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CCc----EEEEcCCchhhHHhHh-------h
Confidence            69999999998 999877776666999999999999987654432    222    2234345555444432       2


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      .|+++.+++
T Consensus       230 ~d~ii~tv~  238 (339)
T COG1064         230 ADAIIDTVG  238 (339)
T ss_pred             CcEEEECCC
Confidence            799999887

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.35  E-value=0.011  Score=55.78  Aligned_cols=48  Identities=27%  Similarity=0.379  Sum_probs=41.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      .++++++++|+|+ ||+|++++..|++.|++|++++|+.++.++..+..
T Consensus       328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~  375 (477)
T PRK09310        328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASRC  375 (477)
T ss_pred             CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            3568899999997 69999999999999999999999988777665543

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=96.33  E-value=0.046  Score=45.76  Aligned_cols=215  Identities=16%  Similarity=0.032  Sum_probs=106.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH-HHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV-ADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ...+.|+++.+|+.+|.+.-..|+.++=++|+....... ...-.   +..+.....+-.+..+-..+++++......+-
T Consensus         4 k~~vfgg~gflg~~ic~~a~~sgy~vvsvsrsgas~~snkid~~~---dve~e~tlvlggnpfsgs~vlk~A~~vv~svg   80 (283)
T KOG4288|consen    4 KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGASPHSNKIDDKQ---DVEVEWTLVLGGNPFSGSEVLKNATNVVHSVG   80 (283)
T ss_pred             cceeecccccchhhhhHHHHhcCceEEEeccccCCCcCCCCcchh---hhhHHHHhhhcCCCcchHHHHHHHHhhceeee
Confidence            457899999999999999999999999998864331000 00000   00011122344556666666666655433333


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcc-------------------------------cchhehhhhHHHHHHHHHHHHhcCC
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPA-------------------------------PAMDINFWGSAYGTYFAIPYLKQTK  176 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~-------------------------------~~~~~n~~~~~~l~~~~~~~l~~~~  176 (287)
                      ++--|---   .....+.+...|.                               .+-++|=.......++..   +.+-
T Consensus        81 ilsen~~k---~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfgn~~~m~~ing~ani~a~kaa~---~~gv  154 (283)
T KOG4288|consen   81 ILSENENK---QTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFGNIILMDRINGTANINAVKAAA---KAGV  154 (283)
T ss_pred             EeecccCc---chhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCccchHHHHHhccHhhHHHHHHHH---HcCC
Confidence            33322110   0000111111111                               111112212222222211   1112


Q ss_pred             CEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccc--hHHHHhh
Q 042560          177 GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEV--DQEIRDV  254 (287)
Q Consensus       177 g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~--~~~~~~~  254 (287)
                      .+++++|-...-.+.--...|=-+|.+.+.-   +-..++  .|=..+.||++...  +...+.+......  +-+..-+
T Consensus       155 ~~fvyISa~d~~~~~~i~rGY~~gKR~AE~E---ll~~~~--~rgiilRPGFiyg~--R~v~g~~~pL~~vg~pl~~~~~  227 (283)
T KOG4288|consen  155 PRFVYISAHDFGLPPLIPRGYIEGKREAEAE---LLKKFR--FRGIILRPGFIYGT--RNVGGIKSPLHTVGEPLEMVLK  227 (283)
T ss_pred             ceEEEEEhhhcCCCCccchhhhccchHHHHH---HHHhcC--CCceeeccceeecc--cccCcccccHHhhhhhHHHHHH
Confidence            6899999776633322233688888777652   222222  45567899999876  3332222111111  1111112


Q ss_pred             hhc----C--------CCCCCHHHHHHHHHHhhccCC
Q 042560          255 QIS----L--------LPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       255 ~~~----~--------~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ...    +        .|....|+||.+++..++|++
T Consensus       228 ~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~  264 (283)
T KOG4288|consen  228 FALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPD  264 (283)
T ss_pred             hhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCC
Confidence            211    1        112248999999999998873

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.27  E-value=0.027  Score=49.39  Aligned_cols=79  Identities=23%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++|+|+++++|.+++..+...|++|+++.++.+..+.. ...   +-.    ...+..+.+..+.+.+.. . .++
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~---g~~----~~~~~~~~~~~~~~~~~~-~-~~~  208 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL---GAD----IAINYREEDFVEVVKAET-G-GKG  208 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---CCc----EEEecCchhHHHHHHHHc-C-CCC
Confidence            678999999999999999999999999999999887765432 222   211    112333333333322221 1 135


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|++++++|
T Consensus       209 ~d~~i~~~~  217 (325)
T TIGR02824       209 VDVILDIVG  217 (325)
T ss_pred             eEEEEECCc
Confidence            999999887

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.26  E-value=0.028  Score=49.59  Aligned_cols=42  Identities=26%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      -.+.+++++|.|. |++|++++..|.+.|++|.+++|+.++.+
T Consensus       148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4567999999998 67999999999999999999999977643

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.23  E-value=0.03  Score=51.94  Aligned_cols=47  Identities=28%  Similarity=0.494  Sum_probs=40.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA   91 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~   91 (287)
                      ++.+++++|.|+ |.+|..+++.|...|+ +|++++|+.++.++..+.+
T Consensus       179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~  226 (423)
T PRK00045        179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF  226 (423)
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence            468899999988 9999999999999998 7999999988877666553

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.22  E-value=0.02  Score=50.10  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=35.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ...+++||.++|.|+++-.|+.++..|.++|++|.++.|+.
T Consensus       153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            34578999999999988899999999999999998887743

>PRK05086 malate dehydrogenase; Provisional

Probab=96.20  E-value=0.054  Score=48.14  Aligned_cols=114  Identities=20%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHH-c--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYAR-R--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~-~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++++|.||+|++|.+++..|.. .  +..+++.++++.. +...-.+....  ....+..  .+.+++.+.       ..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~~~~--~~~~i~~--~~~~d~~~~-------l~   68 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLSHIP--TAVKIKG--FSGEDPTPA-------LE   68 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhhcCC--CCceEEE--eCCCCHHHH-------cC
Confidence            4689999999999999998855 2  4478888887442 11111111111  0111221  111121111       13


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVAS  184 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS  184 (287)
                      ..|++|.++|......       +.-.+.+..|.    .+.+.+.+.|.+.+ .++|.+.|
T Consensus        69 ~~DiVIitaG~~~~~~-------~~R~dll~~N~----~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         69 GADVVLISAGVARKPG-------MDRSDLFNVNA----GIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCCEEEEcCCCCCCCC-------CCHHHHHHHHH----HHHHHHHHHHHHhCCCeEEEEcc
Confidence            5899999999754321       11122344444    45556666665543 45555544

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.18  E-value=0.031  Score=49.94  Aligned_cols=111  Identities=18%  Similarity=0.062  Sum_probs=65.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHH--HHH--H
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA-------RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCK--HFV--D  117 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~--~~~--~  117 (287)
                      ++.|+||+|.+|.+++..|+.+|.       .++++++++...             .......|+.|.....  ...  .
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-------------~a~g~~~Dl~d~~~~~~~~~~~~~   67 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-------------VLEGVVMELMDCAFPLLDGVVPTH   67 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-------------ccceeEeehhcccchhcCceeccC
Confidence            378999999999999999998654       599999865531             0122334444433110  000  0


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--C-CEEEEEc
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--K-GKIIVVA  183 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~-g~iv~is  183 (287)
                      ...+.....|++|+.||.....      . +...+.+..    ...+.+.+.+.+.+.  + +.++++|
T Consensus        68 ~~~~~~~~aDiVVitAG~~~~~------~-~tr~~ll~~----N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        68 DPAVAFTDVDVAILVGAFPRKE------G-MERRDLLSK----NVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             ChHHHhCCCCEEEEcCCCCCCC------C-CcHHHHHHH----HHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            1122335789999999974321      1 223344444    456677777777654  2 5666665

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK04148 hypothetical protein; Provisional

Probab=96.17  E-value=0.016  Score=44.64  Aligned_cols=55  Identities=11%  Similarity=0.078  Sum_probs=44.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      +++.+++.|.+  .|.++|..|++.|++|++++.++...+...+.       .+.++..|+.++
T Consensus        16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p   70 (134)
T PRK04148         16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNP   70 (134)
T ss_pred             cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCC
Confidence            56789999997  78888999999999999999999976655443       256777887754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.17  E-value=0.028  Score=41.86  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=52.0

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      ++|.|. +.+|+.+++.|.+.+.+|++++++++..++..+.       ...++.+|.++++.++++-      ..+.+.+
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~------i~~a~~v   66 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAG------IEKADAV   66 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTT------GGCESEE
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcC------ccccCEE
Confidence            467777 5899999999999777999999999987665442       2668889999988876652      1356666


Q ss_pred             EEccc
Q 042560          130 VTNAG  134 (287)
Q Consensus       130 i~nag  134 (287)
                      |....
T Consensus        67 v~~~~   71 (116)
T PF02254_consen   67 VILTD   71 (116)
T ss_dssp             EEESS
T ss_pred             EEccC
Confidence            65553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02602 lactate dehydrogenase

Probab=96.15  E-value=0.14  Score=46.13  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++.|+|+ |.+|.++|..|+..|.  ++++++.+++.++.....+....  .... .+..+ .|.+.           .
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~-~i~~~-~dy~~-----------~  103 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRT-KILAS-TDYAV-----------T  103 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCC-EEEeC-CCHHH-----------h
Confidence            68999997 8999999999998875  79999998877665555553321  1111 12111 22221           1


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                      ..-|++|..||.....   .    +.=.+.+.    ....+.+.+.+.+.+.  ++.++++|.
T Consensus       104 ~daDiVVitAG~~~k~---g----~tR~dll~----~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        104 AGSDLCIVTAGARQIP---G----ESRLNLLQ----RNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCCCEEEECCCCCCCc---C----CCHHHHHH----HHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            3569999999974321   1    11112222    3445666666666554  367777773

>PRK08223 hypothetical protein; Validated

Probab=96.12  E-value=0.046  Score=47.71  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..++++.+++|.|+ ||+|..++..|++.|. ++.++|.+
T Consensus        22 Q~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         22 QQRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45678889999998 7999999999999998 78888775

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.11  E-value=0.039  Score=51.13  Aligned_cols=47  Identities=21%  Similarity=0.442  Sum_probs=40.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQA   91 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~   91 (287)
                      ++++++++|.|+ |.+|..+++.|.+.| .+|++++|+.++.++..+.+
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~  224 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL  224 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            478899999998 999999999999999 68999999988776665543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.10  E-value=0.067  Score=48.10  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..++++++++|.|+ ||+|..++..|++.|. ++.+++++
T Consensus        19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         19 QQKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45678889999999 8999999999999998 89999875

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.09  E-value=0.033  Score=50.96  Aligned_cols=75  Identities=19%  Similarity=0.324  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++++++|.|| |-+|.-+|+.|+++|. +++++.|+.++.+++++++.           ++....+++....     
T Consensus       174 ~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----------~~~~~l~el~~~l-----  236 (414)
T COG0373         174 GSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----------AEAVALEELLEAL-----  236 (414)
T ss_pred             cccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----------CeeecHHHHHHhh-----
Confidence            3489999999999 7899999999999995 88999999999998888763           2222233333333     


Q ss_pred             hcCCccEEEEccccC
Q 042560          122 HFGRLDHLVTNAGVV  136 (287)
Q Consensus       122 ~~~~idvli~nag~~  136 (287)
                        ...|++|.+.|..
T Consensus       237 --~~~DvVissTsa~  249 (414)
T COG0373         237 --AEADVVISSTSAP  249 (414)
T ss_pred             --hhCCEEEEecCCC
Confidence              3568888887754

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.08  E-value=0.038  Score=48.51  Aligned_cols=80  Identities=18%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++|+|+++++|.+++..+...|+++++++++.++.+.+ ...   +-.  ..  .|....+..+.+.+ ... ..+
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~---g~~--~~--~~~~~~~~~~~~~~-~~~-~~~  213 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LAL---GAA--HV--IVTDEEDLVAEVLR-ITG-GKG  213 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc---CCC--EE--EecCCccHHHHHHH-HhC-CCC
Confidence            578999999999999999999999999999999887765544 221   211  11  23222222222222 211 136


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++++++|.
T Consensus       214 ~d~vi~~~~~  223 (328)
T cd08268         214 VDVVFDPVGG  223 (328)
T ss_pred             ceEEEECCch
Confidence            8999998873

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.04  E-value=0.072  Score=40.50  Aligned_cols=76  Identities=21%  Similarity=0.337  Sum_probs=55.3

Q ss_pred             EEEEecCCChHHHHHHHHHHH-cCCeEE-EEeCCh----------------------hHHHHHHHHHHhcCCCeeEEEee
Q 042560           49 VVLITGASSGIGKHLAYEYAR-RRARLV-LVARRE----------------------RQLREVADQAELMGSPFALAIPA  104 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~-~G~~vv-~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  104 (287)
                      .+.|.|++|-+|+.+++.+.+ .+.+++ .++|+.                      ..+++..+.    . +    +..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~----~-D----VvI   72 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE----A-D----VVI   72 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------S----EEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc----C-C----EEE
Confidence            478999999999999999999 677765 456665                      223333222    1 1    668


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCccEEEEcccc
Q 042560          105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       105 D~~~~~~v~~~~~~~~~~~~~idvli~nag~  135 (287)
                      |+|.++.+.+.++...+.  ++.+++-+.|.
T Consensus        73 DfT~p~~~~~~~~~~~~~--g~~~ViGTTG~  101 (124)
T PF01113_consen   73 DFTNPDAVYDNLEYALKH--GVPLVIGTTGF  101 (124)
T ss_dssp             EES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred             EcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence            999999999999988876  78899988886

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.03  E-value=0.039  Score=48.82  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=51.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.||+|++|.+++......|++|+.++++.++.+.+.+    .+..    ...|..+.+..++ +.+...  ++
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~~~-v~~~~~--~g  211 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLEEA-LKEAAP--DG  211 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHH-HHHHCC--CC
Confidence            58899999999999999888888889999999988876554432    2221    1123333322222 222222  46


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.+.|
T Consensus       212 vd~vld~~g  220 (329)
T cd08294         212 IDCYFDNVG  220 (329)
T ss_pred             cEEEEECCC
Confidence            899888776

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.02  E-value=0.063  Score=49.00  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..+++++++|.|+ ||+|..+++.|++.|. ++.+++++
T Consensus       131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4567888999977 8999999999999998 78888886

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.01  E-value=0.068  Score=44.27  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=35.0

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ....+++.++++|.|+ ||+|..++..|++.|. +++++|++
T Consensus        14 ~~q~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        14 KIVQKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHHHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3456678899999999 7999999999999998 79999887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=95.99  E-value=0.052  Score=48.05  Aligned_cols=80  Identities=16%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.+++|.|+++++|.+++..+...|++|+.++++.++.+...+.+   +..    ...|..+.+..+++ .+...  ++
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~----~~~~~~~~~~~~~v-~~~~~--~~  214 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD----AAINYKTPDLAEAL-KEAAP--DG  214 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc----eEEecCChhHHHHH-HHhcc--CC
Confidence            5789999999999999999999999999999998887655443322   211    11232333322222 22221  46


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       215 ~d~vi~~~g~  224 (329)
T cd05288         215 IDVYFDNVGG  224 (329)
T ss_pred             ceEEEEcchH
Confidence            9999988763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.99  E-value=0.085  Score=44.11  Aligned_cols=39  Identities=33%  Similarity=0.383  Sum_probs=33.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ...++++++++|.|+ ||+|..+++.|++.|. ++.++|.+
T Consensus        22 ~q~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         22 LLEKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            356678889999997 8999999999999998 58888876

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=95.94  E-value=0.015  Score=54.38  Aligned_cols=81  Identities=21%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             CCCCCEEEEecCC----------------ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           44 DVAGKVVLITGAS----------------SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        44 ~~~~k~alVtGa~----------------~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      +++||.++||+|.                |-.|.++|+.+..+|++|.+++-... +.        .+ ..+..+  ++.
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~--------~p-~~v~~i--~V~  320 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA--------DP-QGVKVI--HVE  320 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC--------CC-CCceEE--Eec
Confidence            5899999999874                57999999999999999999874332 10        11 124443  333


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                      +.++..+.   +.+.+. .|++|++|++..+.+
T Consensus       321 ta~eM~~a---v~~~~~-~Di~I~aAAVaDyrp  349 (475)
T PRK13982        321 SARQMLAA---VEAALP-ADIAIFAAAVADWRV  349 (475)
T ss_pred             CHHHHHHH---HHhhCC-CCEEEEeccccceee
Confidence            44444444   444433 699999999986654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.93  E-value=0.053  Score=48.18  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=52.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +.+++++|.|+ |.+|+.+++.|...|+ +|.+++|+.++.++.++++.    .  ...     +.++..+.+       
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g----~--~~~-----~~~~~~~~l-------  236 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG----G--NAV-----PLDELLELL-------  236 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC----C--eEE-----eHHHHHHHH-------
Confidence            78999999998 9999999999998774 78899999888777666541    1  111     222333322       


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      ...|++|.+.+.
T Consensus       237 ~~aDvVi~at~~  248 (311)
T cd05213         237 NEADVVISATGA  248 (311)
T ss_pred             hcCCEEEECCCC
Confidence            246999999875

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.93  E-value=0.048  Score=48.91  Aligned_cols=76  Identities=22%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|++++|+|+ |++|...+..+...|+ +|+++++++++++.+ .+   .+..    ...|..+. ++.+    ..+..+
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~---lGa~----~vi~~~~~-~~~~----~~~~~g  234 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-RE---MGAD----KLVNPQND-DLDH----YKAEKG  234 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HH---cCCc----EEecCCcc-cHHH----HhccCC
Confidence            6889999986 8999999988878898 688899988776533 22   2322    12343332 2322    222235


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      .+|++|.++|.
T Consensus       235 ~~D~vid~~G~  245 (343)
T PRK09880        235 YFDVSFEVSGH  245 (343)
T ss_pred             CCCEEEECCCC
Confidence            68999998873

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.89  E-value=0.043  Score=51.20  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDC  112 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v  112 (287)
                      .++|.|+ |.+|+++++.|.++|.+|++++++++..++..+..      .+..+.+|.++.+.+
T Consensus         2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------~~~~~~gd~~~~~~l   58 (453)
T PRK09496          2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------DVRTVVGNGSSPDVL   58 (453)
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------CEEEEEeCCCCHHHH
Confidence            5788887 99999999999999999999999988876654311      244455565554443

>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]

Probab=95.80  E-value=0.096  Score=45.29  Aligned_cols=90  Identities=21%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             CCCEEEEecCCChHHHHH--HHHHHHcCCeEEEEeC-------Chh----HHHHHHHHHHhcCCCeeEEEeecCCCHHHH
Q 042560           46 AGKVVLITGASSGIGKHL--AYEYARRRARLVLVAR-------RER----QLREVADQAELMGSPFALAIPADVSKVEDC  112 (287)
Q Consensus        46 ~~k~alVtGa~~giG~ai--a~~L~~~G~~vv~~~r-------~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v  112 (287)
                      -.|.+||.|||+|.|++.  +..|. .|+..+-+.-       ++.    -......+...+-+-...-+..|.-+.+.-
T Consensus        40 gPKkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS~e~k  118 (398)
T COG3007          40 GPKKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFSDEMK  118 (398)
T ss_pred             CCceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhhHHHH
Confidence            458899999999999874  33333 4555444321       110    011122223233334567788998888888


Q ss_pred             HHHHHHHHHhcCCccEEEEccccC
Q 042560          113 KHFVDVTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       113 ~~~~~~~~~~~~~idvli~nag~~  136 (287)
                      +..++.+++.+|++|.+|+.-+..
T Consensus       119 ~kvIe~Ik~~~g~vDlvvYSlAsp  142 (398)
T COG3007         119 QKVIEAIKQDFGKVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHhhccccEEEEeccCc
Confidence            889999999999999998876544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.77  E-value=0.13  Score=43.87  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..+++.+++|.|+ ||+|..+++.|++.|. ++.++|.+
T Consensus        20 ~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        20 EALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4677889999988 7999999999999997 78888765

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.76  E-value=0.11  Score=44.97  Aligned_cols=79  Identities=28%  Similarity=0.337  Sum_probs=51.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcC----CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           50 VLITGASSGIGKHLAYEYARRR----ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G----~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +.|.||+|.+|..++..|+..|    .+++++|.++++++....+++......   ....++-.++..+.       ...
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~---~~~~i~~~~d~~~~-------~~~   70 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL---ADIKVSITDDPYEA-------FKD   70 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc---cCcEEEECCchHHH-------hCC
Confidence            4689998899999999999999    689999999887776666654432111   01111111111111       135


Q ss_pred             ccEEEEccccCCC
Q 042560          126 LDHLVTNAGVVPM  138 (287)
Q Consensus       126 idvli~nag~~~~  138 (287)
                      -|++|..+|....
T Consensus        71 aDiVv~t~~~~~~   83 (263)
T cd00650          71 ADVVIITAGVGRK   83 (263)
T ss_pred             CCEEEECCCCCCC
Confidence            7999999987543

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN00203 glutamyl-tRNA reductase

Probab=95.74  E-value=0.057  Score=51.29  Aligned_cols=47  Identities=26%  Similarity=0.429  Sum_probs=41.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA   91 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~   91 (287)
                      ++.+++++|.|+ |++|..+++.|...|+ +|+++.|+.++.+.+.+.+
T Consensus       263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            478999999999 9999999999999997 7999999998887776654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.73  E-value=0.13  Score=46.47  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..++++++++|.|+ ||+|..+++.|+..|. ++.+++..
T Consensus        23 q~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         23 QQSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35678899999998 8999999999999998 78887764

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.66  E-value=0.14  Score=46.60  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ...+++.+++|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus        36 q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         36 QERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46678889999998 7999999999999997 78888765

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.63  E-value=0.16  Score=39.40  Aligned_cols=30  Identities=30%  Similarity=0.594  Sum_probs=26.4

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus         2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            678887 8999999999999998 68888765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=95.60  E-value=0.11  Score=46.10  Aligned_cols=112  Identities=20%  Similarity=0.148  Sum_probs=63.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCCh--hHHHHHHHHHHhc---CCCeeEEEeecCC-CHHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRE--RQLREVADQAELM---GSPFALAIPADVS-KVEDCKHFVDVTM  120 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~--~~~~~~~~~~~~~---~~~~~~~~~~D~~-~~~~v~~~~~~~~  120 (287)
                      ++.|+||+|.+|..++..|+..|.  +|++++++.  +.++.....+...   .+...   ....+ |.+   .      
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~---~i~~~~d~~---~------   69 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA---EIKISSDLS---D------   69 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc---EEEECCCHH---H------
Confidence            689999999999999999999986  599999954  4443333222211   01011   11111 211   1      


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASA  185 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~  185 (287)
                        ...-|++|.++|.....      . +.-.+.+..|+    .+++.+.+.+.+.  ++.++++++.
T Consensus        70 --l~~aDiViitag~p~~~------~-~~r~dl~~~n~----~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          70 --VAGSDIVIITAGVPRKE------G-MSRLDLAKKNA----KIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             --hCCCCEEEEecCCCCCC------C-CCHHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEeCCc
Confidence              13679999999874321      1 11122333343    4455555555443  3677777764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.57  E-value=0.083  Score=50.91  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..+++.+++|.|+ ||+|-.+++.|++.|. ++.+++..
T Consensus       334 ekL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       334 ERYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            7788999999998 8999999999999998 67787753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=95.55  E-value=0.073  Score=46.87  Aligned_cols=80  Identities=21%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .+.+++|+|+++++|.+++..+...|++|+.++++.++.+.+ +.   .+..    ...|..+.+..+.+.+. .. ..+
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~---~g~~----~~~~~~~~~~~~~~~~~-~~-~~~  211 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RA---LGAD----VAVDYTRPDWPDQVREA-LG-GGG  211 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HH---cCCC----EEEecCCccHHHHHHHH-cC-CCC
Confidence            478899999999999999999999999999999888775543 22   2211    11233333333332221 11 125


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++++.|.
T Consensus       212 ~d~vl~~~g~  221 (324)
T cd08244         212 VTVVLDGVGG  221 (324)
T ss_pred             ceEEEECCCh
Confidence            8999988763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.49  E-value=0.081  Score=54.08  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=60.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-Ce-------------EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-AR-------------LVLVARRERQLREVADQAELMGSPFALAIPADVSKVED  111 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~-------------vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  111 (287)
                      +.|.++|.|| |.+|+..++.|++.+ ++             |.+++++.+..+++.+..     ..+..++.|++|.++
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-----~~~~~v~lDv~D~e~  641 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-----ENAEAVQLDVSDSES  641 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-----CCCceEEeecCCHHH
Confidence            4678999998 999999999999863 33             778888888777666543     136678899999988


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccC
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~nag~~  136 (287)
                      +.++++       .+|++|++....
T Consensus       642 L~~~v~-------~~DaVIsalP~~  659 (1042)
T PLN02819        642 LLKYVS-------QVDVVISLLPAS  659 (1042)
T ss_pred             HHHhhc-------CCCEEEECCCch
Confidence            777654       489999998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.47  E-value=0.13  Score=48.43  Aligned_cols=79  Identities=24%  Similarity=0.201  Sum_probs=52.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++.++|.|+ |++|.++|+.|.++|++|.+++++... .+...+.++..+   +.+...+-..             .
T Consensus        13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g---v~~~~~~~~~-------------~   75 (480)
T PRK01438         13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG---ATVRLGPGPT-------------L   75 (480)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC---CEEEECCCcc-------------c
Confidence            457889999997 779999999999999999999866543 333334444433   3333222111             0


Q ss_pred             cCCccEEEEccccCCCC
Q 042560          123 FGRLDHLVTNAGVVPMC  139 (287)
Q Consensus       123 ~~~idvli~nag~~~~~  139 (287)
                      ....|.+|..+|+.+..
T Consensus        76 ~~~~D~Vv~s~Gi~~~~   92 (480)
T PRK01438         76 PEDTDLVVTSPGWRPDA   92 (480)
T ss_pred             cCCCCEEEECCCcCCCC
Confidence            13579999999986543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.46  E-value=0.28  Score=47.30  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=52.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|.|. |.+|+.++++|.++|.++++++.++++.++..+    .   ....+.+|.+|++..+++-      ..+.|.
T Consensus       419 hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~------i~~a~~  484 (558)
T PRK10669        419 HALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAH------LDCARW  484 (558)
T ss_pred             CEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcC------ccccCE
Confidence            4666666 789999999999999999999999988766543    1   2667889999987765542      124565


Q ss_pred             EEEcc
Q 042560          129 LVTNA  133 (287)
Q Consensus       129 li~na  133 (287)
                      ++-..
T Consensus       485 viv~~  489 (558)
T PRK10669        485 LLLTI  489 (558)
T ss_pred             EEEEc
Confidence            55444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.44  E-value=0.058  Score=43.87  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL   93 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~   93 (287)
                      ++.|.|| |-+|+++|..++..|++|.+.+++.+.+++..+.++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~   44 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER   44 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence            4678888 9999999999999999999999999988777666543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.43  E-value=0.048  Score=42.42  Aligned_cols=44  Identities=27%  Similarity=0.313  Sum_probs=38.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL   84 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~   84 (287)
                      ...+++||.++|.|.+.-.|+.++..|.++|++|.++.++...+
T Consensus        22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l   65 (140)
T cd05212          22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQL   65 (140)
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCH
Confidence            34588999999999999999999999999999999998655433

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.41  E-value=0.091  Score=46.87  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|+|+ |++|..++..+...|++ |++++++.++.+.+ .++   +..    ...|..+.+ .+++.+ ... ..
T Consensus       163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~---ga~----~~i~~~~~~-~~~~~~-~~~-~~  230 (339)
T cd08239         163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL---GAD----FVINSGQDD-VQEIRE-LTS-GA  230 (339)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCC----EEEcCCcch-HHHHHH-HhC-CC
Confidence            4889999986 89999999988889998 99998888775543 322   211    223444333 333322 211 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.+.|.
T Consensus       231 ~~d~vid~~g~  241 (339)
T cd08239         231 GADVAIECSGN  241 (339)
T ss_pred             CCCEEEECCCC
Confidence            68999988874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=95.38  E-value=0.12  Score=46.88  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      .|.+++|.|+ |++|...+......|+ +|+.++++.++++.+ .++   +..    ...|..+ .+++.+.+.++..  
T Consensus       185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~---Ga~----~~i~~~~~~~~~~~~v~~~~~--  253 (368)
T TIGR02818       185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKL---GAT----DCVNPNDYDKPIQEVIVEITD--  253 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh---CCC----eEEcccccchhHHHHHHHHhC--
Confidence            5889999986 8999999888888898 799999988876544 222   211    1224332 2233333333332  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       254 ~g~d~vid~~G~  265 (368)
T TIGR02818       254 GGVDYSFECIGN  265 (368)
T ss_pred             CCCCEEEECCCC
Confidence            368999999874

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=95.37  E-value=0.1  Score=45.93  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+++++|.+++......|++++++.++.++.+.+.+ .   +..  .  ..+..+.+ ..+.+.+.... .+
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~---g~~--~--~~~~~~~~-~~~~i~~~~~~-~~  208 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-L---GIG--P--VVSTEQPG-WQDKVREAAGG-AP  208 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-c---CCC--E--EEcCCCch-HHHHHHHHhCC-CC
Confidence            57899999999999999999988999999999888877555433 1   211  1  12323222 22222222211 25


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       209 ~d~v~d~~g~  218 (324)
T cd08292         209 ISVALDSVGG  218 (324)
T ss_pred             CcEEEECCCC
Confidence            8999988773

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.37  E-value=0.15  Score=42.18  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ...+++++++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus        16 Q~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          16 QKRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35567888999986 6699999999999998 67788754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.35  E-value=0.21  Score=41.32  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..+++.+++|.|++ |+|..+++.|+..|. ++.++|.+
T Consensus        15 ~~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence            45577889999885 599999999999998 58888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.34  E-value=0.23  Score=35.01  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARR-RARLVLVAR   79 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r   79 (287)
                      .++++++++|.|+ |+.|+.++..|.+. +.++.+++|
T Consensus        19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            5678999999999 99999999999998 557778777

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=95.31  E-value=0.088  Score=45.88  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .|.+++|++|+|..|.-+..----+|++|+-+.-+.++.+-+.+++   +-+    ...|-..+ ++.+.+.+..-  .+
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD----~~idyk~~-d~~~~L~~a~P--~G  219 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFD----AGIDYKAE-DFAQALKEACP--KG  219 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCc----eeeecCcc-cHHHHHHHHCC--CC
Confidence            4999999999999997554433347999999999888876555544   212    22344433 34444433332  47


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      ||+++-|+|.
T Consensus       220 IDvyfeNVGg  229 (340)
T COG2130         220 IDVYFENVGG  229 (340)
T ss_pred             eEEEEEcCCc
Confidence            9999999996

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.29  E-value=0.18  Score=41.84  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+++||.++|.|| |.+|...++.|.+.|++|.+++++.
T Consensus         5 ~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          5 MIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            35789999999999 8999999999999999999998764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.25  E-value=0.42  Score=42.45  Aligned_cols=113  Identities=16%  Similarity=0.070  Sum_probs=68.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..++.|.|+ |.+|.++|..|+..|.  ++++++.+.+.++.....+.....  .......  -+|.+.           
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~--~~dy~~-----------   68 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA--DKDYSV-----------   68 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE--CCCHHH-----------
Confidence            347899997 9999999999998875  799999988776655555543220  1111111  122222           


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVAS  184 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS  184 (287)
                      ...-|++|.++|.....   .    +.=.+.+..    ...+.+.+.+.+.+..  +.++++|.
T Consensus        69 ~~~adivvitaG~~~k~---g----~~R~dll~~----N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          69 TANSKVVIVTAGARQNE---G----ESRLDLVQR----NVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             hCCCCEEEECCCCCCCC---C----CCHHHHHHH----HHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            13679999999975331   1    111122333    3455666666665543  67777774

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.23  E-value=0.15  Score=41.27  Aligned_cols=46  Identities=22%  Similarity=0.277  Sum_probs=39.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      ......+.|+++.|.|. |.||+++|+.|...|++|+..+|+.....
T Consensus        28 ~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   28 RFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             TTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             CCCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence            45667889999999987 89999999999999999999999888654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.22  E-value=0.25  Score=39.92  Aligned_cols=31  Identities=39%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARRE   81 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~   81 (287)
                      ++|.|+ ||+|..+++.|++.|. ++.++|.+.
T Consensus         2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            678886 8999999999999998 699998865

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.22  E-value=0.19  Score=45.61  Aligned_cols=79  Identities=13%  Similarity=0.176  Sum_probs=53.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +++|...+..+...|+ +|+.++++.++++.+ .+   .+.+    ...|..+. +++.+.+.+...  
T Consensus       186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~---lGa~----~~i~~~~~~~~~~~~v~~~~~--  254 (368)
T cd08300         186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KK---FGAT----DCVNPKDHDKPIQQVLVEMTD--  254 (368)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HH---cCCC----EEEcccccchHHHHHHHHHhC--
Confidence            5899999985 8999999998888999 699999998876643 22   2221    12343332 234444444433  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.++|.
T Consensus       255 ~g~d~vid~~g~  266 (368)
T cd08300         255 GGVDYTFECIGN  266 (368)
T ss_pred             CCCcEEEECCCC
Confidence            368999998873

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.19  E-value=0.26  Score=39.27  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=45.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-C-----CCeeEEEeecCCCHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-G-----SPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~-----~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ++-+.|- |-.|..+|++|.+.|++|.+.+|++++.+++.+.-... .     -.....+..-+.+.+++++++..
T Consensus         3 ~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~   77 (163)
T PF03446_consen    3 KIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFG   77 (163)
T ss_dssp             EEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHC
T ss_pred             EEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhh
Confidence            4566776 79999999999999999999999998877765421000 0     00123444455666777776665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=95.18  E-value=0.18  Score=44.65  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|+ ||+|-.+++.|+..|. ++.++|.+
T Consensus         2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D   32 (312)
T cd01489           2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD   32 (312)
T ss_pred             EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            678887 8999999999999998 67787764

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.18  E-value=0.11  Score=48.56  Aligned_cols=77  Identities=22%  Similarity=0.255  Sum_probs=57.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ...+.++|.|+ |.+|+.+++.|.+.|.+|++++++++..++..++.     ..+..+..|.++.+.++++-      ..
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~------~~  296 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEG------ID  296 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcC------Cc
Confidence            45788999999 99999999999999999999999988776655432     13556788998877654431      13


Q ss_pred             CccEEEEcc
Q 042560          125 RLDHLVTNA  133 (287)
Q Consensus       125 ~idvli~na  133 (287)
                      ..|.+|...
T Consensus       297 ~a~~vi~~~  305 (453)
T PRK09496        297 EADAFIALT  305 (453)
T ss_pred             cCCEEEECC
Confidence            456666544

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=95.16  E-value=0.17  Score=44.89  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++++||++++|..++......|++|+.++++.++.+.+.+    .+..  .+  .|..+.+..+++ .+.... .++
T Consensus       144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~~--i~~~~~~~~~~v-~~~~~~-~~~  213 (324)
T cd08291         144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE--YV--LNSSDPDFLEDL-KELIAK-LNA  213 (324)
T ss_pred             CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EE--EECCCccHHHHH-HHHhCC-CCC
Confidence            4555556999999999887777789999999998876554432    2322  11  233332222222 222211 368


Q ss_pred             cEEEEccc
Q 042560          127 DHLVTNAG  134 (287)
Q Consensus       127 dvli~nag  134 (287)
                      |+++.+.|
T Consensus       214 d~vid~~g  221 (324)
T cd08291         214 TIFFDAVG  221 (324)
T ss_pred             cEEEECCC
Confidence            99998887

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.08  E-value=0.096  Score=46.02  Aligned_cols=46  Identities=22%  Similarity=0.372  Sum_probs=39.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ..+++||.+.|.|.++-+|+.++..|.++|++|.++.++...+++.
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~  199 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKAL  199 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHH
Confidence            4588999999999999999999999999999999997766554443

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=95.08  E-value=0.17  Score=46.62  Aligned_cols=87  Identities=11%  Similarity=0.035  Sum_probs=51.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhHHHHHHHHHHhcC---CCeeEEEeecCCCHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQLREVADQAELMG---SPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .|.+++|.|++|++|...+..+...|+   +|++++++.++++...+......   +  +.....|..+.++..+.+.+.
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G--a~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG--IELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC--ceEEEECCCccccHHHHHHHH
Confidence            578999999999999998776666553   79999999888765544211000   1  111223433322333333332


Q ss_pred             HHhcCCccEEEEcccc
Q 042560          120 MEHFGRLDHLVTNAGV  135 (287)
Q Consensus       120 ~~~~~~idvli~nag~  135 (287)
                      .. ..++|++|.++|.
T Consensus       253 t~-g~g~D~vid~~g~  267 (410)
T cd08238         253 TG-GQGFDDVFVFVPV  267 (410)
T ss_pred             hC-CCCCCEEEEcCCC
Confidence            22 1258888887763

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.08  E-value=0.078  Score=44.52  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      ++.|.||+|.+|.++++.|++.|++|.+.+|+.++.++..+.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~   43 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK   43 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH
Confidence            478999999999999999999999999999998887766554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=95.07  E-value=0.13  Score=44.85  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|+|+++++|.+++..+...|++|+.++++.+..+..
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  180 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA  180 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999887665543

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.06  E-value=0.42  Score=39.70  Aligned_cols=39  Identities=21%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+++||.++|.|| |..|..-++.|.+.|++|.+++.+..
T Consensus         5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             EEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            4688999999998 78999999999999999999987654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=94.99  E-value=0.19  Score=43.95  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +|.+++|.|+++++|.+++......|++|+.+.++.++.+.+
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  183 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL  183 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999998887665433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.99  E-value=0.08  Score=46.23  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+++||.++|.|.+.-.|+.++..|.++|++|.++.++.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            3478999999999999999999999999999999887754

>PRK14851 hypothetical protein; Provisional

Probab=94.96  E-value=0.23  Score=48.82  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC-------------------hhHHHHHHHHHHh-cCCCeeE
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR-------------------ERQLREVADQAEL-MGSPFAL  100 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~-~~~~~~~  100 (287)
                      ...+++.+++|.|+ ||+|..++..|++.|. ++.++|.+                   ..+.+...+.+.. ++..++.
T Consensus        38 Q~kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~  116 (679)
T PRK14851         38 QERLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEIT  116 (679)
T ss_pred             HHHHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEE
Confidence            35678999999995 7999999999999997 67777643                   2344444555544 3344666


Q ss_pred             EEeecCCCHHHHHHHH
Q 042560          101 AIPADVSKVEDCKHFV  116 (287)
Q Consensus       101 ~~~~D~~~~~~v~~~~  116 (287)
                      .+...++ .+.+.+++
T Consensus       117 ~~~~~i~-~~n~~~~l  131 (679)
T PRK14851        117 PFPAGIN-ADNMDAFL  131 (679)
T ss_pred             EEecCCC-hHHHHHHH
Confidence            6666665 33444443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.95  E-value=0.17  Score=40.24  Aligned_cols=85  Identities=19%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH--H-------HhcCCCeeEEEeecCCCHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ--A-------ELMGSPFALAIPADVSKVEDC  112 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~--~-------~~~~~~~~~~~~~D~~~~~~v  112 (287)
                      ..+++||.++|.|| |.+|...++.|.+.|++|.+++...  .++..+.  +       +...-.....+.+ .++.+++
T Consensus         8 ~l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~--~~~l~~l~~i~~~~~~~~~~dl~~a~lVia-aT~d~e~   83 (157)
T PRK06719          8 MFNLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEI--CKEMKELPYITWKQKTFSNDDIKDAHLIYA-ATNQHAV   83 (157)
T ss_pred             EEEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCcc--CHHHHhccCcEEEecccChhcCCCceEEEE-CCCCHHH
Confidence            46789999999998 7899999999999999999886432  2222110  0       0000011233323 4666777


Q ss_pred             HHHHHHHHHhcCCccEEEEccc
Q 042560          113 KHFVDVTMEHFGRLDHLVTNAG  134 (287)
Q Consensus       113 ~~~~~~~~~~~~~idvli~nag  134 (287)
                      +..+.+..++.    .++|++.
T Consensus        84 N~~i~~~a~~~----~~vn~~d  101 (157)
T PRK06719         84 NMMVKQAAHDF----QWVNVVS  101 (157)
T ss_pred             HHHHHHHHHHC----CcEEECC
Confidence            77776665542    3666664

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=94.94  E-value=0.24  Score=43.75  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +|.+++|.|+++++|.+++..+...|++++++.++.++.+.+
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  181 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC  181 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999988888887765544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.90  E-value=0.34  Score=41.13  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=25.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         2 VlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D   32 (234)
T cd01484           2 VLLVGA-GGIGCELLKNLALMGFGQIHVIDMD   32 (234)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            577775 8999999999999998 78888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN02740 Alcohol dehydrogenase-like

Probab=94.89  E-value=0.2  Score=45.75  Aligned_cols=79  Identities=20%  Similarity=0.202  Sum_probs=52.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|++++++.++++.+. +   .+..  .  ..|..+. +...+.+.+...  
T Consensus       198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~---~Ga~--~--~i~~~~~~~~~~~~v~~~~~--  266 (381)
T PLN02740        198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-E---MGIT--D--FINPKDSDKPVHERIREMTG--  266 (381)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-H---cCCc--E--EEecccccchHHHHHHHHhC--
Confidence            6889999986 8999999988888999 6999999887765442 2   2221  1  2243332 223333333332  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +.+|+++.++|.
T Consensus       267 ~g~dvvid~~G~  278 (381)
T PLN02740        267 GGVDYSFECAGN  278 (381)
T ss_pred             CCCCEEEECCCC
Confidence            268999999884

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=94.89  E-value=0.17  Score=44.47  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.+++|.|+++++|.+++..+...|++++++.++.++.+.+ .+   .+-+    ...|..+.+..+++ .+... ..+
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~---~g~~----~~~~~~~~~~~~~~-~~~~~-~~~  207 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KA---LGAD----EVIDSSPEDLAQRV-KEATG-GAG  207 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-Hh---cCCC----EEecccchhHHHHH-HHHhc-CCC
Confidence            678999999999999999999999999999998887765433 22   2211    12232322222222 22211 135


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.+.|
T Consensus       208 ~d~vl~~~g  216 (323)
T cd05282         208 ARLALDAVG  216 (323)
T ss_pred             ceEEEECCC
Confidence            899988886

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=94.86  E-value=0.18  Score=44.84  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ++++++|.|+++++|.+++......|++++++.++.+
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP  182 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            5899999999999999999999999999988887664

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=94.83  E-value=0.15  Score=45.11  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++..++|.|+++++|.+++......|++|+++.++.++.+.+ ..   .+..  ..  .|..+ .+..+.+.+...  +.
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~---~g~~--~v--~~~~~-~~~~~~~~~~~~--~~  207 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KS---LGCD--RP--INYKT-EDLGEVLKKEYP--KG  207 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HH---cCCc--eE--EeCCC-ccHHHHHHHhcC--CC
Confidence            578999999999999999888888999999999887765544 22   2211  11  22222 222233322222  36


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++++.|
T Consensus       208 vd~v~~~~g  216 (329)
T cd08250         208 VDVVYESVG  216 (329)
T ss_pred             CeEEEECCc
Confidence            899988776

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=94.82  E-value=0.19  Score=43.64  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=36.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +|.+++|.|+++++|.+++......|++|+.++++.++.+.+
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  177 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA  177 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            678999999999999999999999999999998887765543

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.82  E-value=0.29  Score=43.95  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=36.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +|.+++|.|+ |++|...+......|++|+++++++++++.+
T Consensus       166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            5899999999 9999999888888999999999988876544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.81  E-value=0.57  Score=43.00  Aligned_cols=59  Identities=17%  Similarity=0.089  Sum_probs=42.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      ...++|.|. +.+|+.++++|.++|.++++++.+..  +    +...   .....+..|.+|++.++++
T Consensus       240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~--~----~~~~---~g~~vI~GD~td~e~L~~A  298 (393)
T PRK10537        240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGL--E----HRLP---DDADLIPGDSSDSAVLKKA  298 (393)
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchh--h----hhcc---CCCcEEEeCCCCHHHHHhc
Confidence            456888887 57999999999999999888876521  1    1111   1356788999998877655

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.74  E-value=0.61  Score=40.36  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++..|+++|.-...+.+......+|+.++.++..++...+.....+..++.++..|+.+..          -..+.
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~----------~~~~~  146 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP----------VADNS  146 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC----------CCCCc
Confidence            58899999998876443333333333479999999998887776665544446777777753321          01246


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.|..
T Consensus       147 fD~Vi~~~v  155 (272)
T PRK11873        147 VDVIISNCV  155 (272)
T ss_pred             eeEEEEcCc
Confidence            899987754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.71  E-value=0.093  Score=45.65  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA   91 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~   91 (287)
                      ++.++|.|| ||-+++++..|++.|+ +|.+++|+.++.+++.+.+
T Consensus       122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            568999997 8999999999999998 6999999998887766543

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.71  E-value=0.31  Score=44.80  Aligned_cols=37  Identities=24%  Similarity=0.298  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      .++++.+++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus        38 ~~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence            4567888999998 7999999999999998 67777653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.69  E-value=0.55  Score=43.79  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.|.||.|++|.++++.|.+.|++|.+++|+.+..++.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~   40 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV   40 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH
Confidence            588999999999999999999999999999987765443

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=94.63  E-value=0.44  Score=44.30  Aligned_cols=112  Identities=21%  Similarity=0.114  Sum_probs=70.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc-------CC--eEEEEeCChhHHHHHHHHHHhcC---CCeeEEEeecCCCHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARR-------RA--RLVLVARRERQLREVADQAELMG---SPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~-------G~--~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~  115 (287)
                      -++.|+|++|.+|.+++..|+..       |.  ++++++++.+.++...-+++...   ..++.+ ..  .+.+.    
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i-~~--~~ye~----  173 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI-GI--DPYEV----  173 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE-ec--CCHHH----
Confidence            46899999999999999999988       65  79999999998877766664421   011211 11  22222    


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc-C--CCEEEEEcC
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-T--KGKIIVVAS  184 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~--~g~iv~isS  184 (287)
                             +..-|++|..+|.....      . ++=.+.++.|    ..+.+...+.+.+ .  ++.+|++|.
T Consensus       174 -------~kdaDiVVitAG~prkp------G-~tR~dLl~~N----~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        174 -------FQDAEWALLIGAKPRGP------G-MERADLLDIN----GQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             -------hCcCCEEEECCCCCCCC------C-CCHHHHHHHH----HHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence                   24679999999974221      1 1112233433    4566777777766 2  366666663

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.58  E-value=0.26  Score=43.93  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|.|+++++|.+++..+.+.|++|+++.+++++.+..
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  206 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA  206 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999988765533

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=94.56  E-value=0.29  Score=44.34  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=51.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +++|...+......|+ +|++++++.++.+.+ ++   .+..    ...|..+. +++.+.+.+...  
T Consensus       187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~---~Ga~----~~i~~~~~~~~~~~~v~~~~~--  255 (369)
T cd08301         187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KK---FGVT----EFVNPKDHDKPVQEVIAEMTG--  255 (369)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HH---cCCc----eEEcccccchhHHHHHHHHhC--
Confidence            6889999986 8999998888888898 799999988765543 22   2221    11233321 234444444433  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +.+|+++.+.|.
T Consensus       256 ~~~d~vid~~G~  267 (369)
T cd08301         256 GGVDYSFECTGN  267 (369)
T ss_pred             CCCCEEEECCCC
Confidence            368999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.55  E-value=0.13  Score=36.77  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CCChHHHHHHHHHHHcC---CeEEEE-eCChhHHHHHHHHH
Q 042560           55 ASSGIGKHLAYEYARRR---ARLVLV-ARRERQLREVADQA   91 (287)
Q Consensus        55 a~~giG~aia~~L~~~G---~~vv~~-~r~~~~~~~~~~~~   91 (287)
                      |+|.+|.++++.|.+.|   .+|.+. +|++++.++..++.
T Consensus         6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~   46 (96)
T PF03807_consen    6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY   46 (96)
T ss_dssp             STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence            66999999999999999   899855 99999888776654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.54  E-value=0.26  Score=44.03  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=34.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR   79 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r   79 (287)
                      ...+.||++-|.|. |.||+++++++...|++|+..++
T Consensus       137 g~el~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~  173 (324)
T COG0111         137 GTELAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDP  173 (324)
T ss_pred             cccccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECC
Confidence            34678999999998 89999999999999999999999

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.53  E-value=0.59  Score=41.66  Aligned_cols=114  Identities=19%  Similarity=0.105  Sum_probs=65.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +.+++.|.|| |.+|..++..++..| +++++++.+.+..+.....+...   .+.... +.. -+|.+.   +      
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~-~~d~~~---l------   71 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILG-TNNYED---I------   71 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-EEe-CCCHHH---h------
Confidence            5678999997 889999999999999 68999999876544322212111   111111 111 122221   1      


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                        ..-|++|.++|......       ..-.+.+..|.    .+.+.+.+.+.+.  ++.++++|.
T Consensus        72 --~~ADiVVitag~~~~~g-------~~r~dll~~n~----~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         72 --KDSDVVVITAGVQRKEE-------MTREDLLTING----KIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             --CCCCEEEECCCCCCCCC-------CCHHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence              35699999998643211       11122333343    4556666666543  255677654

>PRK07411 hypothetical protein; Validated

Probab=94.52  E-value=0.3  Score=44.85  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ..++++.+++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        33 q~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         33 QKRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HHHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35678889999998 7999999999999998 77777654

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.48  E-value=0.23  Score=44.91  Aligned_cols=74  Identities=15%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .|++++|.|+ |++|..++......|++|++++.+.++..+..+++   +..    ...|..+.+.+.+       ..+.
T Consensus       183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---Ga~----~vi~~~~~~~~~~-------~~~~  247 (360)
T PLN02586        183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---GAD----SFLVSTDPEKMKA-------AIGT  247 (360)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---CCc----EEEcCCCHHHHHh-------hcCC
Confidence            6889999775 89999998888888999988887766544333322   211    1123333322221       1235


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|++|.++|
T Consensus       248 ~D~vid~~g  256 (360)
T PLN02586        248 MDYIIDTVS  256 (360)
T ss_pred             CCEEEECCC
Confidence            899988887

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=94.46  E-value=0.41  Score=42.72  Aligned_cols=75  Identities=23%  Similarity=0.335  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+|+++++|.+++......|++|+.+.++ ++.+ ...+   .+..    ...|..+.+..+.+    .. .++
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~-~~~~---~g~~----~~~~~~~~~~~~~l----~~-~~~  227 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIP-LVKS---LGAD----DVIDYNNEDFEEEL----TE-RGK  227 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHH-HHHH---hCCc----eEEECCChhHHHHH----Hh-cCC
Confidence            58999999999999999999988999998887764 2222 2222   2211    12333333332222    22 246


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++++.|
T Consensus       228 vd~vi~~~g  236 (350)
T cd08248         228 FDVILDTVG  236 (350)
T ss_pred             CCEEEECCC
Confidence            899988876

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.45  E-value=0.29  Score=44.12  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+......|++ |+.++++.++.+.+ ++   .+.+    ...|..+++..+++ .+... ..
T Consensus       176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~---~Ga~----~~i~~~~~~~~~~i-~~~~~-~~  244 (358)
T TIGR03451       176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-RE---FGAT----HTVNSSGTDPVEAI-RALTG-GF  244 (358)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HH---cCCc----eEEcCCCcCHHHHH-HHHhC-CC
Confidence            5889999985 89999998888888985 88888887775544 22   2221    12243333222222 22211 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|+++.++|.
T Consensus       245 g~d~vid~~g~  255 (358)
T TIGR03451       245 GADVVIDAVGR  255 (358)
T ss_pred             CCCEEEECCCC
Confidence            58999988873

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=94.44  E-value=0.34  Score=42.76  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      .+.+++|.|+++++|.+++......|++|++++++.++.+..
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            367999999999999999999889999999999988775544

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK14967 putative methyltransferase; Provisional

Probab=94.42  E-value=1.7  Score=36.39  Aligned_cols=77  Identities=30%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++..++-.|+++|.   ++..+++.|+ +|+.++.++..++...+..+..+. ++.++..|+.+.      .     ..+
T Consensus        36 ~~~~vLDlGcG~G~---~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~------~-----~~~  100 (223)
T PRK14967         36 PGRRVLDLCTGSGA---LAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA------V-----EFR  100 (223)
T ss_pred             CCCeEEEecCCHHH---HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh------c-----cCC
Confidence            46789999988755   3445556676 899999999888766666554432 466776776431      1     124


Q ss_pred             CccEEEEccccCC
Q 042560          125 RLDHLVTNAGVVP  137 (287)
Q Consensus       125 ~idvli~nag~~~  137 (287)
                      +.|+++.|..+..
T Consensus       101 ~fD~Vi~npPy~~  113 (223)
T PRK14967        101 PFDVVVSNPPYVP  113 (223)
T ss_pred             CeeEEEECCCCCC
Confidence            7899999987643

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=94.42  E-value=0.42  Score=41.92  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=25.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|+ ||+|-++++.|+..|. ++.++|.+
T Consensus         2 VlVVGa-GGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           2 ILVIGA-GGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence            677775 7999999999999998 67777653

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.41  E-value=0.3  Score=44.52  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=48.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .|.+++|.|+ |++|...+......|++|++++++.++..+..++   .+-+    ...|..+.+.+.       +..+.
T Consensus       178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~---lGa~----~~i~~~~~~~v~-------~~~~~  242 (375)
T PLN02178        178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR---LGAD----SFLVTTDSQKMK-------EAVGT  242 (375)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh---CCCc----EEEcCcCHHHHH-------HhhCC
Confidence            6889999986 8999999888888899999988876553333322   2221    112333322222       11246


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       243 ~D~vid~~G~  252 (375)
T PLN02178        243 MDFIIDTVSA  252 (375)
T ss_pred             CcEEEECCCc
Confidence            8999998874

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.39  E-value=0.18  Score=44.24  Aligned_cols=79  Identities=23%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      -+++||.++|.|-++-.|+.+|..|.++|++|.++. |+.+ +++..+        +..++..=+.+.+.++..+     
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~e~~~--------~ADIVIsavg~~~~v~~~~-----  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LPAVCR--------RADILVAAVGRPEMVKGDW-----  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HHHHHh--------cCCEEEEecCChhhcchhe-----
Confidence            378999999999999999999999999999999994 6542 332222        1223334445555444432     


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                        -+...+|-..|+..
T Consensus       220 --lk~GavVIDvGin~  233 (296)
T PRK14188        220 --IKPGATVIDVGINR  233 (296)
T ss_pred             --ecCCCEEEEcCCcc
Confidence              13345666667654

>PRK08328 hypothetical protein; Provisional

Probab=94.39  E-value=0.15  Score=43.19  Aligned_cols=41  Identities=24%  Similarity=0.471  Sum_probs=34.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQ   83 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~   83 (287)
                      ..++++++++|.|+ ||+|.++++.|++.|. ++.++|...-+
T Consensus        22 q~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         22 QEKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             HHHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            45667888999998 7999999999999998 78888775443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.36  E-value=0.28  Score=44.50  Aligned_cols=78  Identities=21%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ +++|...+..+...|+ +|+++++++++++-+ .++   +..    ...|..+++-.++ +.+...  +
T Consensus       191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~---Ga~----~~i~~~~~~~~~~-i~~~~~--~  258 (371)
T cd08281         191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL---GAT----ATVNAGDPNAVEQ-VRELTG--G  258 (371)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc---CCc----eEeCCCchhHHHH-HHHHhC--C
Confidence            5789999985 8999998888778899 688898888876533 222   211    1234333322222 222222  3


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       259 g~d~vid~~G~  269 (371)
T cd08281         259 GVDYAFEMAGS  269 (371)
T ss_pred             CCCEEEECCCC
Confidence            68999998874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=94.34  E-value=0.35  Score=44.37  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      ++.+++|.|+++++|.+++..+...|+++++++++.++.+
T Consensus       189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~  228 (398)
T TIGR01751       189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAE  228 (398)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            5789999999999999999888889999888887776544

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.30  E-value=0.089  Score=41.88  Aligned_cols=45  Identities=29%  Similarity=0.462  Sum_probs=34.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE   86 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~   86 (287)
                      ..+++||.++|.|.+.-+|+.++..|.++|++|.++......+++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~   75 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE   75 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc
Confidence            446899999999999999999999999999999988776655443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.29  E-value=0.37  Score=40.72  Aligned_cols=79  Identities=22%  Similarity=0.144  Sum_probs=56.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ...++.|+.++=.|+++|   .++..+|+.|++|...|-++..++....+....+- .     .|-     .....+++.
T Consensus        54 ~~~~l~g~~vLDvGCGgG---~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-~-----i~y-----~~~~~edl~  119 (243)
T COG2227          54 LRFDLPGLRVLDVGCGGG---ILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-N-----IDY-----RQATVEDLA  119 (243)
T ss_pred             cccCCCCCeEEEecCCcc---HhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-c-----ccc-----hhhhHHHHH
Confidence            334489999999999999   69999999999999999999998877666554431 1     221     122333444


Q ss_pred             HhcCCccEEEEcc
Q 042560          121 EHFGRLDHLVTNA  133 (287)
Q Consensus       121 ~~~~~idvli~na  133 (287)
                      +..++.|++++.=
T Consensus       120 ~~~~~FDvV~cmE  132 (243)
T COG2227         120 SAGGQFDVVTCME  132 (243)
T ss_pred             hcCCCccEEEEhh
Confidence            4447889987654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.29  E-value=1.8  Score=42.26  Aligned_cols=42  Identities=10%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      .+.++|.|. |-+|+.+++.|.++|.++++++.+++..++..+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~  441 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK  441 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence            356778777 789999999999999999999999998776644

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=94.28  E-value=0.23  Score=44.02  Aligned_cols=42  Identities=31%  Similarity=0.460  Sum_probs=37.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|.|+++.+|.+++..+...|+++++++++.++.+..
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~  203 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV  203 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999999999999999999999999999988776554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=94.19  E-value=4.5  Score=37.22  Aligned_cols=157  Identities=15%  Similarity=0.110  Sum_probs=88.2

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSG-IGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~g-iG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++.++=.|+++| ++.+.    +..|+ +|+.++.++..++.+.+.++.++-  .++.++..|+.+      ..++..+
T Consensus       220 ~g~rVLDlfsgtG~~~l~a----a~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~------~l~~~~~  289 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSA----LMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK------LLRTYRD  289 (396)
T ss_pred             CCCeEEEeccCCCHHHHHH----HhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH------HHHHHHh
Confidence            5777777766644 44332    23465 899999999999888777766552  367888888632      2222222


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ..++.|++|.|+-......       +    .+.....+.-.+.+.+.+.+++ +|.++..| .++...          .
T Consensus       290 ~~~~fDlVilDPP~f~~~k-------~----~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~s-cs~~~~----------~  346 (396)
T PRK15128        290 RGEKFDVIVMDPPKFVENK-------S----QLMGACRGYKDINMLAIQLLNP-GGILLTFS-CSGLMT----------S  346 (396)
T ss_pred             cCCCCCEEEECCCCCCCCh-------H----HHHHHHHHHHHHHHHHHHHcCC-CeEEEEEe-CCCcCC----------H
Confidence            2347899998886532210       1    1111122333455566666653 45555444 333322          3


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      .....+....+.+.+.++++.....-+-|-|...
T Consensus       347 ~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP~~~  380 (396)
T PRK15128        347 DLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIA  380 (396)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEEEcCCCCCCCCCC
Confidence            4444555555566555577776655455555443

>PRK14852 hypothetical protein; Provisional

Probab=94.13  E-value=0.4  Score=48.62  Aligned_cols=72  Identities=19%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC-------------------hhHHHHHHHHHHh-cCCCeeE
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR-------------------ERQLREVADQAEL-MGSPFAL  100 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~-~~~~~~~  100 (287)
                      ..++++.+++|.|. ||+|..+++.|+..|. ++.++|.+                   ..+.+...+.++. ++..++.
T Consensus       327 Q~kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~  405 (989)
T PRK14852        327 QRRLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIR  405 (989)
T ss_pred             HHHHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEE
Confidence            35778899999995 7999999999999997 67776643                   2344445555544 3344566


Q ss_pred             EEeecCCCHHHHHHH
Q 042560          101 AIPADVSKVEDCKHF  115 (287)
Q Consensus       101 ~~~~D~~~~~~v~~~  115 (287)
                      .+...++ .+.++++
T Consensus       406 ~~~~~I~-~en~~~f  419 (989)
T PRK14852        406 SFPEGVA-AETIDAF  419 (989)
T ss_pred             EEecCCC-HHHHHHH
Confidence            6655553 3444443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.13  E-value=0.31  Score=36.78  Aligned_cols=90  Identities=23%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--CCccEEEEcccc
Q 042560           58 GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--GRLDHLVTNAGV  135 (287)
Q Consensus        58 giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--~~idvli~nag~  135 (287)
                      |+|...+.-+...|++|+++++++++.+.+.+    .+..    ...|-++.+    +.+++.+..  .++|++|.++|.
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~----~~~~~~~~~----~~~~i~~~~~~~~~d~vid~~g~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD----HVIDYSDDD----FVEQIRELTGGRGVDVVIDCVGS   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES----EEEETTTSS----HHHHHHHHTTTSSEEEEEESSSS
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc----ccccccccc----cccccccccccccceEEEEecCc
Confidence            68999888888899999999999888654332    2311    224444443    333334433  369999999983


Q ss_pred             CCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Q 042560          136 VPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA  186 (287)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~  186 (287)
                      .                          ...+..+..+++ +|++++++...
T Consensus        69 ~--------------------------~~~~~~~~~l~~-~G~~v~vg~~~   92 (130)
T PF00107_consen   69 G--------------------------DTLQEAIKLLRP-GGRIVVVGVYG   92 (130)
T ss_dssp             H--------------------------HHHHHHHHHEEE-EEEEEEESSTS
T ss_pred             H--------------------------HHHHHHHHHhcc-CCEEEEEEccC
Confidence            1                          122333344443 68999988765

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.12  E-value=0.056  Score=39.63  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      .+++||.++|.|+ |..|..-++.|.+.|++|.+++...
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence            4689999999999 8999999999999999999999986

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=94.10  E-value=0.48  Score=43.26  Aligned_cols=42  Identities=31%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|+|+++++|.+++......|+++++++++.++.+.+
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~  234 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC  234 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            578999999999999999988888999998888877765544

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.10  E-value=0.7  Score=41.26  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=36.9

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ....++.||++-|.|- |.||+++|+++...|++|+..+|++.
T Consensus       139 ~~~~~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~  180 (324)
T COG1052         139 LLGFDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN  180 (324)
T ss_pred             ccccCCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            3446789999999997 89999999999999999999998763

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=94.09  E-value=0.41  Score=42.91  Aligned_cols=79  Identities=22%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|++++|.|+ +++|..++..+...|+ +|++++++.++.+.+ .++   +.+    ...|..+.+-.+++. +... .+
T Consensus       172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~---ga~----~~i~~~~~~~~~~l~-~~~~-~~  240 (351)
T cd08233         172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL---GAT----IVLDPTEVDVVAEVR-KLTG-GG  240 (351)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh---CCC----EEECCCccCHHHHHH-HHhC-CC
Confidence            6889999985 7999999998889999 788888887775533 222   221    123444333222222 2111 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|+++.++|.
T Consensus       241 ~~d~vid~~g~  251 (351)
T cd08233         241 GVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEECCCC
Confidence            49999999873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.08  E-value=0.3  Score=43.98  Aligned_cols=74  Identities=24%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARR---ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +|++++|+|+ |++|...+..+...|++|++++|+   +++.+ ..   +..+.   ..  .|..+ +++.+ .    +.
T Consensus       172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~-~~---~~~Ga---~~--v~~~~-~~~~~-~----~~  235 (355)
T cd08230         172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD-IV---EELGA---TY--VNSSK-TPVAE-V----KL  235 (355)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH-HH---HHcCC---EE--ecCCc-cchhh-h----hh
Confidence            6889999986 999999998777789999999984   44433 22   22232   22  23332 22222 1    11


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                      .+.+|++|.++|.
T Consensus       236 ~~~~d~vid~~g~  248 (355)
T cd08230         236 VGEFDLIIEATGV  248 (355)
T ss_pred             cCCCCEEEECcCC
Confidence            2478999999873

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.08  E-value=1.8  Score=38.69  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=67.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH-Hh--cCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA-EL--MGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~-~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ++.+++.|.|| |.+|.+++..++..|. ++++++.+++..+...... ..  .......+. . .+|.+.         
T Consensus         4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~-~~d~~~---------   71 (321)
T PTZ00082          4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-G-TNNYED---------   71 (321)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-E-CCCHHH---------
Confidence            35578999996 7799999999999995 8999999887543221111 11  111111221 1 122221         


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASA  185 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~  185 (287)
                        ...-|++|.++|....... ...++ .-.+.+..|    ..+.+.+.+.+.+..  +.++++|.-
T Consensus        72 --l~~aDiVI~tag~~~~~~~-~~~~~-~r~~~l~~n----~~i~~~i~~~i~~~~p~a~~iv~sNP  130 (321)
T PTZ00082         72 --IAGSDVVIVTAGLTKRPGK-SDKEW-NRDDLLPLN----AKIMDEVAEGIKKYCPNAFVIVITNP  130 (321)
T ss_pred             --hCCCCEEEECCCCCCCCCC-CcCCC-CHHHHHHHH----HHHHHHHHHHHHHHCCCeEEEEecCc
Confidence              1356999999997543211 00010 112223333    346666777665533  567776643

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.07  E-value=0.74  Score=41.24  Aligned_cols=40  Identities=25%  Similarity=0.224  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..+.|+++.|.|. |.||+++|+.|...|++|+..+|+...
T Consensus       142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            4689999999987 779999999999999999999998654

>PLN02827 Alcohol dehydrogenase-like

Probab=94.05  E-value=0.42  Score=43.57  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ |++|...+......|++ |++++++.++.+.+ .+   .+..    ...|..+. ++..+.+.+...  
T Consensus       193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~---lGa~----~~i~~~~~~~~~~~~v~~~~~--  261 (378)
T PLN02827        193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KT---FGVT----DFINPNDLSEPIQQVIKRMTG--  261 (378)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HH---cCCc----EEEcccccchHHHHHHHHHhC--
Confidence            6899999986 89999998888888985 77777777665433 22   2211    11333321 234443443332  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.++|.
T Consensus       262 ~g~d~vid~~G~  273 (378)
T PLN02827        262 GGADYSFECVGD  273 (378)
T ss_pred             CCCCEEEECCCC
Confidence            368999999874

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=94.04  E-value=0.38  Score=41.98  Aligned_cols=80  Identities=18%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|++++|.||+|..|. ++-+|++ .|+.|+-..-+.++..-+..+.   +.+    ...|--++.++++++.+...  .
T Consensus       153 ~geTv~VSaAsGAvGq-l~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~---G~d----~afNYK~e~~~~~aL~r~~P--~  222 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQ-LVGQFAKLMGCYVVGSAGSKEKVDLLKTKF---GFD----DAFNYKEESDLSAALKRCFP--E  222 (343)
T ss_pred             CCCEEEEeeccchhHH-HHHHHHHhcCCEEEEecCChhhhhhhHhcc---CCc----cceeccCccCHHHHHHHhCC--C
Confidence            6799999999999996 5556666 5999998888888765444433   111    11233444455555554322  3


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      +||+.+-|+|.
T Consensus       223 GIDiYfeNVGG  233 (343)
T KOG1196|consen  223 GIDIYFENVGG  233 (343)
T ss_pred             cceEEEeccCc
Confidence            79999999996

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.04  E-value=0.16  Score=46.87  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      .+.|++++|.|+ |.||+.++..+...|++|+++++++.+++..
T Consensus       199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A  241 (413)
T cd00401         199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQA  241 (413)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence            468999999999 5899999999999999999999988775543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.01  E-value=1.2  Score=40.28  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  123 (287)
                      .+.+++|+|+ |-||+..+..+...|+ +|+++++++++++-..+..    +  ...+ .+...+    ....++.+.. 
T Consensus       168 ~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~----g--~~~~-~~~~~~----~~~~~~~~~t~  235 (350)
T COG1063         168 PGGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG----G--ADVV-VNPSED----DAGAEILELTG  235 (350)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC----C--CeEe-ecCccc----cHHHHHHHHhC
Confidence            4448999998 7899998887778887 6777788888876554422    1  1111 222221    1222222222 


Q ss_pred             C-CccEEEEccc
Q 042560          124 G-RLDHLVTNAG  134 (287)
Q Consensus       124 ~-~idvli~nag  134 (287)
                      | ..|++|=++|
T Consensus       236 g~g~D~vie~~G  247 (350)
T COG1063         236 GRGADVVIEAVG  247 (350)
T ss_pred             CCCCCEEEECCC
Confidence            3 5999999999

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.98  E-value=0.67  Score=39.60  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC-----------CeEEEEeCC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRR-----------ARLVLVARR   80 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G-----------~~vv~~~r~   80 (287)
                      .+..+++|.|+ ||+|..+++.|++.|           .++.++|..
T Consensus         9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736         9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            36778999998 899999999999874           278888765

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=93.98  E-value=0.48  Score=43.07  Aligned_cols=79  Identities=14%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      ++.+++|.| ++++|.+++..+...|+ +|++++++.++.+.+ .++   +-.    ...+..+. ++..+.+.+...  
T Consensus       190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~l---Ga~----~~i~~~~~~~~~~~~v~~~~~--  258 (373)
T cd08299         190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KEL---GAT----ECINPQDYKKPIQEVLTEMTD--  258 (373)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---CCc----eEecccccchhHHHHHHHHhC--
Confidence            578899996 58999999999999999 799999988776554 222   211    11222221 123333333322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +.+|+++.++|.
T Consensus       259 ~~~d~vld~~g~  270 (373)
T cd08299         259 GGVDFSFEVIGR  270 (373)
T ss_pred             CCCeEEEECCCC
Confidence            368999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.98  E-value=2.9  Score=40.74  Aligned_cols=59  Identities=15%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      ..++|.|. |-+|+.+++.|.++|.++++++.+++..++..+    .+   ...+..|.++++..++
T Consensus       401 ~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~~~L~~  459 (601)
T PRK03659        401 PQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQLELLRA  459 (601)
T ss_pred             CCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCHHHHHh
Confidence            45777775 889999999999999999999999998776543    11   3456677776655443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.96  E-value=0.86  Score=40.24  Aligned_cols=109  Identities=21%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             EEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           51 LITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        51 lVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .|.|+ |++|.+++..|+..|  .++++++++.+..+.....+.....  ........  .|.+.           ...-
T Consensus         2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~~-----------l~~a   67 (300)
T cd00300           2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYAD-----------AADA   67 (300)
T ss_pred             EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHHH-----------hCCC
Confidence            57787 679999999999998  5899999998877766665544321  11111111  22111           1367


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                      |++|.++|.....      . +.-...+    .....+.+.+.+.+++.  ++.++++|.
T Consensus        68 DiVIitag~p~~~------~-~~R~~l~----~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          68 DIVVITAGAPRKP------G-ETRLDLI----NRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CEEEEcCCCCCCC------C-CCHHHHH----HHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            9999999874321      1 1111122    23445667777766654  367777773

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.94  E-value=1.6  Score=39.76  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=66.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.| ++++|..++..+...|. +++.+++++++.+.+.+    .++  ...  .+..+.++..+.+.+... ..
T Consensus       184 ~g~~VlV~g-~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~----~~~--~~v--i~~~~~~~~~~~l~~~~~-~~  253 (386)
T cd08283         184 PGDTVAVWG-CGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS----HLG--AET--INFEEVDDVVEALRELTG-GR  253 (386)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC--cEE--EcCCcchHHHHHHHHHcC-CC
Confidence            577899996 58999999888888998 58888888776554333    212  122  233332222222222211 12


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA  186 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~  186 (287)
                      .+|+++.+.|.-.....     +....+..-++..........+.+.+++ +|+++.++...
T Consensus       254 ~~D~vld~vg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~iv~~g~~~  309 (386)
T cd08283         254 GPDVCIDAVGMEAHGSP-----LHKAEQALLKLETDRPDALREAIQAVRK-GGTVSIIGVYG  309 (386)
T ss_pred             CCCEEEECCCCcccccc-----cccccccccccccCchHHHHHHHHHhcc-CCEEEEEcCCC
Confidence            69999999874221100     0011011100111112234455555654 68999987543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.94  E-value=0.42  Score=42.04  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|+ ||+|-.+|+.|+..|. ++.+++..
T Consensus         2 VLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           2 CLLLGA-GTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence            677777 7999999999999998 67777654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.92  E-value=0.15  Score=47.14  Aligned_cols=41  Identities=27%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      .+.|++++|.|. |.||+.++..+...|++|+++++++.+..
T Consensus       209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~  249 (425)
T PRK05476        209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICAL  249 (425)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhH
Confidence            478999999998 68999999999999999999999876643

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=93.88  E-value=0.46  Score=42.96  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +++|...+......|+ +|+.++++.++.+.+ +++   +-.  .+  .|..+. +.+.+.+.+...  
T Consensus       184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~---ga~--~~--i~~~~~~~~~~~~~~~~~~--  252 (365)
T cd08277         184 PGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF---GAT--DF--INPKDSDKPVSEVIREMTG--  252 (365)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---CCC--cE--eccccccchHHHHHHHHhC--
Confidence            5889999975 8999999888888899 688999887775544 222   211  11  222221 122223333322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.++|.
T Consensus       253 ~g~d~vid~~g~  264 (365)
T cd08277         253 GGVDYSFECTGN  264 (365)
T ss_pred             CCCCEEEECCCC
Confidence            468999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.88  E-value=0.23  Score=39.51  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL   84 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~   84 (287)
                      ..+.||+++|.|= |.+|+.+|+.|...|++|.++..++-+.
T Consensus        19 ~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~a   59 (162)
T PF00670_consen   19 LMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRA   59 (162)
T ss_dssp             S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHH
T ss_pred             eeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHH
Confidence            5678999999998 8999999999999999999999987653

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.87  E-value=0.93  Score=40.03  Aligned_cols=40  Identities=30%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVA   88 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~   88 (287)
                      +++.|.|| |-+|..++..++..|. +|++++++++.++...
T Consensus         3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~   43 (307)
T PRK06223          3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKA   43 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHH
Confidence            46889999 8889999999999875 9999999887665433

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.80  E-value=0.15  Score=38.90  Aligned_cols=90  Identities=19%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcC-------CCeeEEEeecCCCHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMG-------SPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..-++-|.|+ |-.|.++++.|.+.|+.|..+ +|+.+..+++.+.+....       -.....+..-+.| +.+..+++
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va~   86 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVAE   86 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHHH
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHHH
Confidence            3456888898 889999999999999998876 566555555544431110       0123333334343 37788888


Q ss_pred             HHHHh--cCCccEEEEccccCC
Q 042560          118 VTMEH--FGRLDHLVTNAGVVP  137 (287)
Q Consensus       118 ~~~~~--~~~idvli~nag~~~  137 (287)
                      ++...  ..+=.+++|+.|-.+
T Consensus        87 ~La~~~~~~~g~iVvHtSGa~~  108 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTSGALG  108 (127)
T ss_dssp             HHHCC--S-TT-EEEES-SS--
T ss_pred             HHHHhccCCCCcEEEECCCCCh
Confidence            88765  333358999999754

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=93.79  E-value=0.57  Score=42.14  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLR   85 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~   85 (287)
                      ++.+++|+| ++++|.+++..+...|+ +|++++++.++.+
T Consensus       177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            688999997 59999999988888899 8998988777654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.73  E-value=0.39  Score=41.67  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLR   85 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~   85 (287)
                      ++++++|.|+ |++|...+..+...|++ |++++++.++++
T Consensus       120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366       120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            7889999987 89999998888888996 888877776654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.73  E-value=0.6  Score=41.71  Aligned_cols=94  Identities=14%  Similarity=0.061  Sum_probs=56.4

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH-------H-hcCCCeeEEEeecCCCHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA-------E-LMGSPFALAIPADVSKVED  111 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~-------~-~~~~~~~~~~~~D~~~~~~  111 (287)
                      .+...+++|++.|.|. |.+|.++|+.|.+.|.+|++..|+..+..+.....       . ......+..+.  +-+.. 
T Consensus        10 ~~~~~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLa--VPd~~-   85 (330)
T PRK05479         10 ADLSLIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMIL--LPDEV-   85 (330)
T ss_pred             CChhhhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEc--CCHHH-
Confidence            4556678999999987 57999999999999999988777644332222111       0 00111233322  22233 


Q ss_pred             HHHHH-HHHHHhcCCccEEEEccccCC
Q 042560          112 CKHFV-DVTMEHFGRLDHLVTNAGVVP  137 (287)
Q Consensus       112 v~~~~-~~~~~~~~~idvli~nag~~~  137 (287)
                      ...++ +++.....+=.++++++|+..
T Consensus        86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i  112 (330)
T PRK05479         86 QAEVYEEEIEPNLKEGAALAFAHGFNI  112 (330)
T ss_pred             HHHHHHHHHHhcCCCCCEEEECCCCCh
Confidence            35555 556554333246788888763

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=93.67  E-value=0.74  Score=40.93  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH---------HHHHhcCCCeeEEEeecCCCHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA---------DQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      .+...++||++.|.|- |.+|+++|++|...|++|++..|.....+...         ++....  ..+..+.  +.+++
T Consensus         9 ~~~~~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~--ADVV~ll--LPd~~   83 (335)
T PRK13403          9 ANVELLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRT--AQVVQML--LPDEQ   83 (335)
T ss_pred             CChhhhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhc--CCEEEEe--CCChH
Confidence            4567789999999998 88999999999999999988877533322111         111111  1233322  23344


Q ss_pred             HHHHHH-HHHHHhcCCccEEEEccccCCC
Q 042560          111 DCKHFV-DVTMEHFGRLDHLVTNAGVVPM  138 (287)
Q Consensus       111 ~v~~~~-~~~~~~~~~idvli~nag~~~~  138 (287)
                      + ..++ +++.....+=.++++..|++..
T Consensus        84 t-~~V~~~eil~~MK~GaiL~f~hgfni~  111 (335)
T PRK13403         84 Q-AHVYKAEVEENLREGQMLLFSHGFNIH  111 (335)
T ss_pred             H-HHHHHHHHHhcCCCCCEEEECCCccee
Confidence            4 4444 3455555555688888887743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
2jah_A	247	Biochemical And Structural Analysis Of The Clavulan		6e-15
2jap_A	247	Clavulanic Acid Dehydrogenase: Structural And Bioch		9e-15
4bb5_A	292	Free-Wilson And Structural Approaches To Co-Optimis		3e-14
4bb6_A	292	Free-Wilson And Structural Approaches To Co-Optimis		3e-14
3pdj_A	273	Crystal Structure Of Human 11-Beta-Hydroxysteroid D		4e-14
1xu7_A	286	Crystal Structure Of The Interface Open Conformatio		5e-14
3d5q_A	272	Crystal Structure Of 11b-Hsd1 In Complex With Triaz		5e-14
2rbe_A	275	The Discovery Of 2-Anilinothiazolones As 11beta-Hsd		5e-14
2irw_A	264	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		5e-14
2ilt_A	275	Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W		6e-14
3ch6_A	286	Crystal Structure Of 11beta-Hsd1 Double Mutant (L26		6e-14
2bel_A	283	Structure Of Human 11-Beta-Hydroxysteroid Dehydroge		6e-14
4hfr_A	272	Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In		7e-14
3lz6_A	263	Guinea Pig 11beta Hydroxysteroid Dehydrogenase With		2e-13
3dwf_A	276	Crystal Structure Of The Guinea Pig 11beta-Hydroxys		2e-13
1xse_A	295	Crystal Structure Of Guinea Pig 11beta-Hydroxystero		2e-13
3g49_A	277	N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-		3e-13
2uvd_A	246	The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier		4e-13
1y5m_A	276	The Crystal Structure Of Murine 11b-Hydroxysteroid		6e-13
3gmd_A	264	Structure-Based Design Of 7-Azaindole-Pyrrolidines		8e-13
3o4r_A	261	Crystal Structure Of Human DehydrogenaseREDUCTASE (		2e-12
1g6k_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant E		2e-12
3tfo_A	264	Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car		2e-12
1gco_A	261	Crystal Structure Of Glucose Dehydrogenase Complexe		4e-12
1gee_A	261	Crystal Structure Of Glucose Dehydrogenase Mutant Q		4e-12
2ztu_A	260	T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C		5e-12
1wmb_A	260	Crystal Structure Of Nad Dependent D-3-Hydroxybutyl		6e-12
2ztm_A	260	T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L		6e-12
1rwb_A	261	Cooperative Effect Of Two Surface Amino Acid Mutati		1e-11
4dml_A	269	3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn		2e-11
4fn4_A	254	Short-chain Nad(h)-dependent Dehydrogenase/reductas		8e-11
3ay6_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		9e-11
3ay7_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		1e-10
3aus_A	269	Crystal Structure Of Bacillus Megaterium Glucose De		1e-10
2hq1_A	247	Crystal Structure Of Orf 1438 A Putative GlucoseRIB		2e-10
1bdb_A	277	Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From		2e-10
1yde_A	270	Crystal Structure Of Human Retinal Short-Chain Dehy		2e-10
2cfc_A	250	Structural Basis For Stereo Selectivity In The (R)-		3e-10
2ae2_A	260	Tropinone Reductase-Ii Complexed With Nadp+ And Pse		7e-10
1ipe_A	259	Tropinone Reductase-Ii Complexed With Nadph Length		8e-10
2y93_A	281	Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2		8e-10
3nug_A	247	Crystal Structure Of Wild Type Tetrameric Pyridoxal		2e-09
2zat_A	260	Crystal Structure Of A Mammalian Reductase Length =		3e-09
3rku_A	287	Substrate Fingerprint And The Structure Of Nadp+ De		4e-09
3rih_A	293	Crystal Structure Of A Putative Short Chain Dehydro		5e-09
3v8b_A	283	Crystal Structure Of A 3-Ketoacyl-Acp Reductase Fro		6e-09
1edo_A	244	The X-Ray Structure Of Beta-Keto Acyl Carrier Prote		9e-09
3rsh_A	251	Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc		1e-08
3tzh_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-08
3sj7_A	252	Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F		1e-08
2ew8_A	249	Crystal Structure Of The (s)-specific 1-phenylethan		2e-08
2hsd_A	253	The Refined Three-Dimensional Structure Of 3alpha,2		2e-08
1hdc_A	254	Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste		2e-08
3imf_A	257	1.99 Angstrom Resolution Crystal Structure Of A Sho		2e-08
3kzv_A	254	The Crystal Structure Of A Cytoplasmic Protein With		2e-08
3tsc_A	277	Crystal Structure Of Short Chain Dehydrogenase Map_		2e-08
3r1i_A	276	Crystal Structure Of A Short-Chain Type Dehydrogena		3e-08
3ndr_A	247	Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro		3e-08
2ehd_A	234	Crystal Structure Analysis Of Oxidoreductase Length		3e-08
3o38_A	266	Crystal Structure Of A Short Chain Dehydrogenase Fr		3e-08
3osu_A	246	Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro		3e-08
3tzc_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		3e-08
4iqg_C	271	Crystal Structure Of Bpro0239 Oxidoreductase From P		4e-08
3emk_A	246	2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		4e-08
3enn_A	249	2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN		5e-08
2ph3_A	245	Crystal Structure Of 3-oxoacyl-[acyl Carrier Protei		5e-08
2yz7_A	260	X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F		6e-08
3tzk_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		7e-08
3pk0_A	262	Crystal Structure Of Short-Chain DehydrogenaseREDUC		8e-08
3u09_A	251	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		1e-07
3pgx_A	280	Crystal Structure Of A Putative Carveol Dehydrogena		1e-07
2gdz_A	267	Crystal Structure Of 15-Hydroxyprostaglandin Dehydr		1e-07
1ae1_A	273	Tropinone Reductase-I Complex With Nadp Length = 27		2e-07
3ucx_A	264	The Structure Of A Short Chain Dehydrogenase From M		2e-07
1vl8_A	267	Crystal Structure Of Gluconate 5-dehydrogenase (tm0		2e-07
1geg_A	256	Cryatal Structure Analysis Of Meso-2,3-Butanediol D		2e-07
3n74_A	261	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		2e-07
3qiv_A	253	Crystal Structure Of A Putative Short-Chain Dehydro		3e-07
1hxh_A	253	Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID D		4e-07
2dtd_A	264	Structure Of Thermoplasma Acidophilum Aldohexose De		4e-07
2zk7_A	257	Structure Of A C-Terminal Deletion Mutant Of Thermo		5e-07
1i01_A	244	Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr		5e-07
3f9i_A	249	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		6e-07
4gkb_A	258	Crystal Structure Of A Short Chain Dehydrogenase Ho		7e-07
1nff_A	260	Crystal Structure Of Rv2002 Gene Product From Mycob		7e-07
2nm0_A	253	Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl		8e-07
2bgk_A	278	X-Ray Structure Of Apo-Secoisolariciresinol Dehydro		8e-07
3oec_A	317	Crystal Structure Of Carveol Dehydrogenase From Myc		8e-07
4e3z_A	272	Crystal Structure Of A Oxidoreductase From Rhizobiu		1e-06
3tjr_A	301	Crystal Structure Of A Rv0851c Ortholog Short Chain		1e-06
3ak4_A	263	Crystal Structure Of Nadh-Dependent Quinuclidinone		1e-06
1q7c_A	244	The Structure Of Betaketoacyl-[acp] Reductase Y151f		2e-06
1h5q_A	265	Mannitol Dehydrogenase From Agaricus Bisporus Lengt		2e-06
3is3_A	270	Crystal Structure Of 17beta-Hydroxysteroid Dehydrog		2e-06
1nfr_A	260	Rv2002 Gene Product From Mycobacterium Tuberculosis		2e-06
3m1a_A	281	The Crystal Structure Of A Short-Chain Dehydrogenas		3e-06
1zem_A	262	Crystal Structure Of Nad+-Bound Xylitol Dehydrogena		3e-06
1spx_A	278	Crystal Structure Of Glucose Dehydrogenase Of Caeno		3e-06
4e6p_A	259	Crystal Structure Of A Probable Sorbitol Dehydrogen		3e-06
3op4_A	248	Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr		4e-06
2c07_A	285	Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng		4e-06
3sx2_A	278	Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Ca		4e-06
2bd0_A	244	Chlorobium Tepidum Sepiapterin Reductase Complexed		4e-06
3ftp_A	270	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		4e-06
4b79_A	242	The Aeropath Project And Pseudomonas Aeruginosa Hig		4e-06
3gvc_A	277	Crystal Structure Of Probable Short-Chain Dehydroge		5e-06
3v2g_A	271	Crystal Structure Of A DehydrogenaseREDUCTASE FROM		6e-06
4iin_A	271	Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car		6e-06
3itd_A	270	Crystal Structure Of An Inactive 17beta-Hydroxyster		6e-06
3v2h_A	281	The Crystal Structure Of D-Beta-Hydroxybutyrate Deh		6e-06
3uve_A	286	Crystal Structure Of Carveol Dehydrogenase ((+)-Tra		7e-06
1ybv_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		7e-06
3ged_A	247	Fingerprint And Structural Analysis Of A Apo Scor E		7e-06
1doh_A	283	Structure Of Trihydroxynaphthalene Reductase In Com		7e-06
3u5t_A	267	The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr		8e-06
3ioy_A	319	Structure Of Putative Short-Chain Dehydrogenase (Sa		9e-06
3uf0_A	273	Crystal Structure Of A Putative Nad(P) Dependent Gl		1e-05
1iy8_A	267	Crystal Structure Of Levodione Reductase Length = 2		1e-05
1xkq_A	280	Crystal Structure Of Short-Chain DehydrogenaseREDUC		2e-05
3oml_A	613	Structure Of Full-Length Peroxisomal Multifunctiona		2e-05
1yb1_A	272	Crystal Structure Of Human 17-Beta-Hydroxysteroid D		2e-05
1ja9_A	274	Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalen		2e-05
2b4q_A	276	Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex		2e-05
3i3o_A	291	2.06 Angstrom Resolution Crystal Structure Of A Sho		3e-05
1xhl_A	297	Crystal Structure Of Putative Tropinone Reductase-I		4e-05
3ijr_A	291	2.05 Angstrom Resolution Crystal Structure Of A Sho		4e-05
3ctm_A	279	Crystal Structure Of A Carbonyl Reductase From Cand		4e-05
3awd_A	260	Crystal Structure Of Gox2181 Length = 260		5e-05
2nwq_A	272	Short Chain Dehydrogenase From Pseudomonas Aerugino		5e-05
2fwm_X	250	Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodih		5e-05
3u0b_A	454	Crystal Structure Of An Oxidoreductase From Mycobac		7e-05
1zbq_A	327	Crystal Structure Of Human 17-beta-hydroxysteroid D		8e-05
3vtz_A	269	Structure Of Thermoplasma Volcanium Aldohexose Dehy		8e-05
4da9_A	280	Crystal Structure Of Putative Short-Chain Dehydroge		8e-05
4dyv_A	272	Crystal Structure Of A Short-Chain DehydrogenaseRED		9e-05
1k2w_A	256	Crystal Structure Of Sorbitol Dehydrogenase From R.		9e-05
3i4f_A	264	Structure Of Putative 3-oxoacyl-reductase From Baci		1e-04
3uwr_A	286	Crystal Structure Of Carveol Dehydrogenase From Myc		1e-04
1xg5_A	279	Structure Of Human Putative Dehydrogenase Mgc4172 I		1e-04
1zjy_A	251	Structure Of R-Specific Alcohol Dehydrogenase (Muta		1e-04
1nxq_A	251	Crystal Structure Of R-Alcohol Dehydrogenase (Radh)		1e-04
1a27_A	289	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		2e-04
3t7c_A	299	Crystal Structure Of Carveol Dehydrogenase From Myc		2e-04
1fdu_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		2e-04
1gz6_A	319	(3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat		2e-04
1fdw_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M		2e-04
1fds_A	327	Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C		2e-04
4fw8_A	454	Crystal Structure Of Fabg4 Complexed With Coenzyme		3e-04
3v1t_C	462	Crystal Structure Of A Putative Ketoacyl Reductase		3e-04
1equ_A	327	Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin		3e-04
3m1l_A	432	Crystal Strucutre Of A C-Terminal Trunacted Mutant		3e-04
3q6i_A	446	Crystal Structure Of Fabg4 And Coenzyme Binary Comp		3e-04
3lls_A	475	Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote		3e-04
2q2q_A	255	Structure Of D-3-Hydroxybutyrate Dehydrogenase From		3e-04
2d1y_A	256	Crystal Structure Of Tt0321 From Thermus Thermophil		3e-04
2ntn_A	267	Crystal Structure Of Maba-c60v/g139a/s144l Length =		3e-04
1yxm_A	303	Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa		3e-04
3un1_A	260	Crystal Structure Of An Oxidoreductase From Sinorhi		4e-04
1uls_A	245	Crystal Structure Of Tt0140 From Thermus Thermophil		5e-04
4eso_A	255	Crystal Structure Of A Putative Oxidoreductase Prot		8e-04
3vc7_A	254	Crystal Structure Of A Putative Oxidoreductase From		8e-04
1uzm_A	247	Maba From Mycobacterium Tuberculosis Length = 247		8e-04
1iol_A	327	Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com		9e-04

>pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 99/229 (43%), Gaps = 6/229 (2%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV LITGASSGIG+                           D+    G+   + +  DV
Sbjct: 7   GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHV-LELDV 65
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +     V  T+E  G LD LV NAG+  +   ED  D T     +D N  G  Y T 
Sbjct: 66  ADRQGVDAAVASTVEALGGLDILVNNAGIXLLGPVED-ADTTDWTRXIDTNLLGLXYXTR 124
Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVT 225
            A+P+L ++KG ++  +S AG +     + Y A+K    A  ETLR E     + + ++ 
Sbjct: 125 AALPHLLRSKGTVVQXSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIE 184
Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS 274
           PG  ++E+  G   +   K   +Q I   QI  L  Q   E  +  V +
Sbjct: 185 PGTTDTELR-GHITHTATKEXYEQRIS--QIRKLQAQDIAEAVRYAVTA 230

>pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 6/229 (2%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV LITGASSGIG+                           D+    G+   + +  DV
Sbjct: 7   GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHV-LELDV 65
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +     V  T+E  G LD LV NAG++ +   ED  D T     +D N  G  Y T 
Sbjct: 66  ADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVED-ADTTDWTRMIDTNLLGLMYMTR 124
Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVT 225
            A+P+L ++KG ++ ++S AG +     + Y A+K    A  ETLR E     + + ++ 
Sbjct: 125 AALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIE 184
Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS 274
           PG  ++E+ G   +      E+  E R  QI  L  Q   E  +  V +
Sbjct: 185 PGTTDTELRG--HITHTATKEM-YEQRISQIRKLQAQDIAEAVRYAVTA 230

>pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 23/251 (9%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 30  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 89
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 90  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 147
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 148 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFALDGFFSSIRKEYSVSRVN 207
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-SACR 277
           + IT+   GLI++E T  K ++               I  +   P EECA  I+   A R
Sbjct: 208 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIKGGALR 252
Query: 278 GDR-YLTQPSW 287
            +  Y     W
Sbjct: 253 QEEVYYDSSRW 263

>pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 23/251 (9%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 30  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 89
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 90  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 147
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 148 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFALDGFFSSIRKEYSVSRVN 207
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-SACR 277
           + IT+   GLI++E T  K ++               I  +   P EECA  I+   A R
Sbjct: 208 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIKGGALR 252
Query: 278 GDR-YLTQPSW 287
            +  Y     W
Sbjct: 253 QEEVYYDSSRW 263

>pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase 1 (11b-Hsd1) In Complex With 4,4-Disubstituted Cyclohexylbenzamide Inhibitor Length = 273

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 11  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 70
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 71  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 128
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 129 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 188
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 189 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 228

>pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of Tetrameric 11b-hsd1 Length = 286

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 24  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 83
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 84  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 141
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 142 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 201
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 202 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 241

>pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole Inhibitor Length = 272

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 101/234 (43%), Gaps = 21/234 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 10  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 69
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 70  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 127
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 128 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 187
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
           + IT+   GLI++E T  K ++               I  +   P EECA  I+
Sbjct: 188 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEII 226

>pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1 Inhibitors Length = 275

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 13  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 72
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 73  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 130
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 131 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 190
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 191 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 230

>pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Ether Inhibitor Length = 264

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 5   EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 64
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 65  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 122
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 123 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 182
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 183 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 222

>pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Sulfone Inhibitor Length = 275

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 20  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 79
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 80  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 137
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 138 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 197
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 198 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 237

>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r, F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3- Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone Length = 286

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 23/251 (9%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 24  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 83
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 84  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 141
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 142 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 201
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-SACR 277
           + IT+   GLI++E T  K ++               I  +   P EECA  I+   A R
Sbjct: 202 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIKGGALR 246
Query: 278 GDR-YLTQPSW 287
            +  Y     W
Sbjct: 247 QEEVYYDSSRW 257

>pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In Complex With Nadp And Carbenoxolone Length = 283

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 27  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 86
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 87  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 144
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 145 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVN 204
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E T  K ++               I  +   P EECA  I+ 
Sbjct: 205 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIK 244

>pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In Complex With An Orally Bioavailable Acidic Inhibitor Azd4017. Length = 272

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 23/251 (9%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                                +G+  A  I
Sbjct: 10  EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYI 69
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + FV    +  G LD L+ N      + LF D  DI     +M++NF   
Sbjct: 70  AGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD--DIHHVRKSMEVNFLSY 127
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG---GD 218
              T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+     +
Sbjct: 128 VVLTVAALPMLKQSNGSIVVVSSLAGKVAYPLVAAYSASKFALDGFFSSIRKEYSVSRVN 187
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-SACR 277
           + IT+   GLI++E T  K ++               I  +   P EECA  I+   A R
Sbjct: 188 VSITLCVLGLIDTE-TAMKAVSG--------------IVHMQAAPKEECALEIIKGGALR 232
Query: 278 GDR-YLTQPSW 287
            +  Y     W
Sbjct: 233 QEEVYYDSSRW 243

>pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 29/254 (11%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 5   EMLQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYI 64
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
              +  +   + FV       G LD L+ N  +     F  + +I     +M++NF    
Sbjct: 65  AGSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTF-FHGEIDNVRKSMEVNFHSFV 123
Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDI 219
             +  A+P L Q++G I VV+S AG +  P ++ Y+ASK A    + TLR EF     ++
Sbjct: 124 VLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKFALDGFFSTLRSEFLVNKVNV 183
Query: 220 GITIVTPGLIESEI----TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-S 274
            IT+   GLI++E     T G +L                    P  P EECA  I+  +
Sbjct: 184 SITLCILGLIDTETAIKATSGIYLG-------------------PASPKEECALEIIKGT 224
Query: 275 ACRGDR-YLTQPSW 287
           A R D  Y     W
Sbjct: 225 ALRQDEMYYVGSRW 238

>pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 29/254 (11%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 7   EMLQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYI 66
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
              +  +   + FV       G LD L+ N  +     F  + +I     +M++NF    
Sbjct: 67  AGSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTF-FHGEIDNVRKSMEVNFHSFV 125
Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDI 219
             +  A+P L Q++G I VV+S AG +  P ++ Y+ASK A    + TLR EF     ++
Sbjct: 126 VLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKFALDGFFSTLRSEFLVNKVNV 185
Query: 220 GITIVTPGLIESEI----TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-S 274
            IT+   GLI++E     T G +L                    P  P EECA  I+  +
Sbjct: 186 SITLCILGLIDTETAIKATSGIYLG-------------------PASPKEECALEIIKGT 226
Query: 275 ACRGDR-YLTQPSW 287
           A R D  Y     W
Sbjct: 227 ALRQDEMYYVGSRW 240

>pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 29/254 (11%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 28  EMLQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYI 87
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
              +  +   + FV       G LD L+ N  +     F  + +I     +M++NF    
Sbjct: 88  AGSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTF-FHGEIDNVRKSMEVNFHSFV 146
Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDI 219
             +  A+P L Q++G I VV+S AG +  P ++ Y+ASK A    + TLR EF     ++
Sbjct: 147 VLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKFALDGFFSTLRSEFLVNKVNV 206
Query: 220 GITIVTPGLIESEI----TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-S 274
            IT+   GLI++E     T G +L                    P  P EECA  I+  +
Sbjct: 207 SITLCILGLIDTETAIKATSGIYLG-------------------PASPKEECALEIIKGT 247
Query: 275 ACRGDR-YLTQPSW 287
           A R D  Y     W
Sbjct: 248 ALRQDEMYYVGSRW 261

>pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 29/254 (11%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 7   EMLQGKKVIVTGASKGIGREIAYHLAKMGAHVVVTARSKEALQKVVARCLELGAASAHYI 66
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
              +  +   + FV       G LD L+ N  +     F  + +I     +M++NF    
Sbjct: 67  AGSMEDMTFAEEFVAEAGNLMGGLDMLILNHVLYNRLTF-FHGEIDNVRKSMEVNFHSFV 125
Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDI 219
             +  A+P L Q++G I VV+S AG +  P ++ Y+ASK A    + TLR EF     ++
Sbjct: 126 VLSVAAMPMLMQSQGSIAVVSSVAGKITYPLIAPYSASKFALDGFFSTLRSEFLVNKVNV 185
Query: 220 GITIVTPGLIESEI----TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN-S 274
            IT+   GLI++E     T G +L                    P  P EECA  I+  +
Sbjct: 186 SITLCILGLIDTETAIKATSGIYLG-------------------PASPKEECALEIIKGT 226
Query: 275 ACRGDR-YLTQPSW 287
           A R D  Y     W
Sbjct: 227 ALRQDEMYYVGSRW 240

>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 26/247 (10%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXX-XXXXXXXXXXXDQAELMGSPFALAIPAD 105
           GKV L+TGAS GIG+                            D+ + +GS  A+A+ AD
Sbjct: 4   GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD-AIAVRAD 62
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP----MCLFEDYTDITKPAPAMDINFWGS 161
           V+  ED  + V  T++ FG++D LV NAGV      M + E+  D       ++ N  G 
Sbjct: 63  VANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWD-----TVINTNLKGV 117
Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
              T     + ++Q  G+I+ +AS  G    P  + Y A+KA  I L +T   E    +I
Sbjct: 118 FLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNI 177
Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP---TEECAKAIVNSAC 276
            +  + PG I +++T    L++N K E+        + L+P       ++ A A+   A 
Sbjct: 178 TVNAIAPGFIATDMT--DVLDENIKAEM--------LKLIPAAQFGEAQDIANAVTFFAS 227
Query: 277 RGDRYLT 283
              +Y+T
Sbjct: 228 DQSKYIT 234

>pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid Dehydrogenase: An Important Therapeutic Target For Diabetes Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 14  EMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYI 73
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + F+    +  G LD L+ N      + LF D  DI      M++NF   
Sbjct: 74  AGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHD--DIHSVRRVMEVNFLSY 131
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGD 218
              +  A+P LKQ+ G I V++S AG +  P ++ Y+ASK A    + T+R E      +
Sbjct: 132 VVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVN 191
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E            ++    I + Q S     P EECA  I+ 
Sbjct: 192 VSITLCVLGLIDTETA----------MKEISGIINAQAS-----PKEECALEIIK 231

>pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I Length = 264

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 21/235 (8%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E + GK V++TGAS GIG+                            +   +G+  A  I
Sbjct: 5   EMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYI 64
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-GVVPMCLFEDYTDITKPAPAMDINFWGS 161
              +  +   + F+    +  G LD L+ N      + LF D  DI      M++NF   
Sbjct: 65  AGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHD--DIHSVRRVMEVNFLSY 122
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGD 218
              +  A+P LKQ+ G I V++S AG +  P ++ Y+ASK A    + T+R E      +
Sbjct: 123 VVMSTAALPMLKQSNGSIAVISSLAGKVTYPMVAPYSASKFALDGFFSTIRTELYITKVN 182
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN 273
           + IT+   GLI++E            ++    I + Q S     P EECA  I+ 
Sbjct: 183 VSITLCVLGLIDTETA----------MKAVSGIVNAQAS-----PKEECALEIIK 222

>pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAY 163
           V K ED +  V   ++  G +D LV+NA V P   F    D+T+      +DIN    A 
Sbjct: 73  VGKAEDRERLVATAVKLHGGIDILVSNAAVNP--FFGSIMDVTEEVWDKTLDINVKAPAL 130
Query: 164 GTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGI 221
            T   +P + K+  G +++V+S A + P P  S YN SK A + L +TL +E    +I +
Sbjct: 131 MTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRV 190
Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD-R 280
             + PGLI++  +   +++K  +  + + +R  ++     +P E+CA  IV+  C  D  
Sbjct: 191 NCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLG----EP-EDCA-GIVSFLCSEDAS 244
Query: 281 YLT 283
           Y+T
Sbjct: 245 YIT 247

>pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXX-XXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +D+ GKVV+ITG+S+G+GK                            ++ + +G   A+A
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIA 61
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFE-DYTDITKPAPAMDINFW 159
           +  DV+   D  + V   ++ FG+LD ++ NAG+  P+   E   +D  K    +D N  
Sbjct: 62  VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLANPVSSHEMSLSDWNK---VIDTNLT 118
Query: 160 GSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           G+  G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+  
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAP 178
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
             I +  + PG I + I   KF +   + +V+  I
Sbjct: 179 KGIRVNNIGPGAINTPINAEKFADPEQRADVESMI 213

>pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 4/189 (2%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KV+LITGAS GIG+                            +    G   ALA   DV+
Sbjct: 5   KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGT-ALAQVLDVT 63
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
                  F    ++ +GR+D LV NAGV+P+        + +    +D+N  G  +G   
Sbjct: 64  DRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLA-AVKVDEWERMIDVNIKGVLWGIGA 122
Query: 168 AIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTP 226
            +P ++ Q  G+II + S       P  + Y A+K A  A+ + LR E   +I +T V P
Sbjct: 123 VLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE-STNIRVTCVNP 181
Query: 227 GLIESEITG 235
           G++ESE+ G
Sbjct: 182 GVVESELAG 190

>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXX-XXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +D+ GKVV+ITG+S+G+GK                            ++ + +G   A+A
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIA 61
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFE-DYTDITKPAPAMDINFW 159
           +  DV+   D  + V   ++ FG+LD ++ NAG+  P+   E   +D  K    +D N  
Sbjct: 62  VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNK---VIDTNLT 118
Query: 160 GSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           G+  G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+  
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAP 178
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
             I +  + PG I + I   KF +   + +V+  I
Sbjct: 179 KGIRVNNIGPGAINTPINAEKFADPEQRADVESMI 213

>pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXX-XXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +D+ GKVV+ITG+S+G+GK                            ++ + +G   A+A
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIA 61
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFE-DYTDITKPAPAMDINFW 159
           +  DV+   D  + V   ++ FG+LD ++ NAG+  P+   E   +D  K    +D N  
Sbjct: 62  VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNK---VIDTNLT 118
Query: 160 GSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           G+  G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+  
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAP 178
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
             I +  + PG I + I   KF +   + +V+  I
Sbjct: 179 KGIRVNNIGPGAINTPINAEKFADPEQRADVESMI 213

>pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 106/248 (42%), Gaps = 38/248 (15%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP--- 103
           GKV ++TG++SGIG                            D AE+      LA     
Sbjct: 4   GKVAVVTGSTSGIG--------LGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV 55
Query: 104 ------ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
                 AD+SK E  +  VD  +   GR+D LV NAG+    L ED+    K    + +N
Sbjct: 56  KVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFP-TEKWDAILALN 114
Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                +GT  A+P++ KQ  G+II +ASA G +     S Y A+K   +   +   +E  
Sbjct: 115 LSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETA 174
Query: 217 GDIGIT--IVTPG-----LIESEITGGKFLNKNGKLEVDQE------IRDVQISLLPVQP 263
           G  GIT   + PG     L+E +I+      KNG   VDQE      + + Q SL  V P
Sbjct: 175 GQ-GITANAICPGWVRAPLVEKQIS--ALAEKNG---VDQETAARELLSEKQPSLQFVTP 228
Query: 264 TEECAKAI 271
            +    A+
Sbjct: 229 EQLGGTAV 236

>pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 106/248 (42%), Gaps = 38/248 (15%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP--- 103
           GKV ++TG++SGIG                            D AE+      LA     
Sbjct: 4   GKVAVVTGSTSGIG--------LGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV 55
Query: 104 ------ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
                 AD+SK E  +  VD  +   GR+D LV NAG+    L ED+    K    + +N
Sbjct: 56  KVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFP-TEKWDAILALN 114
Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                +GT  A+P++ KQ  G+II +ASA G +     S Y A+K   +   +   +E  
Sbjct: 115 LSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETA 174
Query: 217 GDIGIT--IVTPG-----LIESEITGGKFLNKNGKLEVDQE------IRDVQISLLPVQP 263
           G  GIT   + PG     L+E +I+      KNG   VDQE      + + Q SL  V P
Sbjct: 175 GQ-GITANAICPGWVRTPLVEKQIS--ALAEKNG---VDQETAARELLSEKQPSLQFVTP 228
Query: 264 TEECAKAI 271
            +    A+
Sbjct: 229 EQLGGTAV 236

>pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 106/248 (42%), Gaps = 38/248 (15%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP--- 103
           GKV ++TG++SGIG                            D AE+      LA     
Sbjct: 4   GKVAVVTGSTSGIG--------LGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV 55
Query: 104 ------ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
                 AD+SK E  +  VD  +   GR+D LV NAG+    L ED+    K    + +N
Sbjct: 56  KVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFP-TEKWDAILALN 114
Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                +GT  A+P++ KQ  G+II +ASA G +     S Y A+K   +   +   +E  
Sbjct: 115 LSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETA 174
Query: 217 GDIGIT--IVTPG-----LIESEITGGKFLNKNGKLEVDQE------IRDVQISLLPVQP 263
           G  GIT   + PG     L+E +I+      KNG   VDQE      + + Q SL  V P
Sbjct: 175 GQ-GITANAICPGWVRSPLVEKQIS--ALAEKNG---VDQETAARELLSEKQPSLQFVTP 228
Query: 264 TEECAKAI 271
            +    A+
Sbjct: 229 EQLGGTAV 236

>pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXX-XXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +D+ GKVV+ITG+S+G+GK                            ++ + +G   A+A
Sbjct: 3   KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIA 61
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFE-DYTDITKPAPAMDINFW 159
           +  DV+   D  + V   ++ FG+LD ++ NAG+  P+   E   +D  K    +D N  
Sbjct: 62  VKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNK---VIDTNLT 118
Query: 160 GSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           G+  G+  AI Y  +   KG +I ++S    +P P    Y ASK     + +TL +E+  
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTKTLALEYAP 178
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
             I +  + PG I + I   KF +   + +V+  I
Sbjct: 179 KGIRVNNIGPGAINTPINAEKFADPEQRADVESMI 213

>pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 15/195 (7%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           ++ L+TGAS GIG+                             A       A A+ ADVS
Sbjct: 29  RIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVS 88
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
           +  + +      +E +GRLD LV NAG+    L      +D+  +      +D+N  G  
Sbjct: 89  QESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSV------LDLNLGGVF 142
Query: 163 YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             +  A    LKQ  G+II +AS  G +  P  + Y+A+KA  I L +T+  E     GI
Sbjct: 143 LCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASR-GI 201
Query: 222 TI--VTPGLIESEIT 234
           T+  V PG I +++T
Sbjct: 202 TVNAVAPGFIATDMT 216

>pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 84/198 (42%), Gaps = 13/198 (6%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           + +  KVV++TGA SGIG+                            +   MG    L +
Sbjct: 3   QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEV-LGV 61
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNA----GVVPMCLFEDYTDITKPAPAMDINF 158
            ADVSK +D + FV  T E + R+D L  NA    GV P+    D          + +N 
Sbjct: 62  KADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDEL----WERVLAVNL 117
Query: 159 WGSAYGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           + + Y +   IP  LKQ KG I+  AS AG       + Y  +K   I L  ++   + G
Sbjct: 118 YSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHY-G 176
Query: 218 DIGITIVT--PGLIESEI 233
           D GI  V   PG +++ I
Sbjct: 177 DQGIRAVAVLPGTVKTNI 194

>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 6/212 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+  KVV+ITG S+G+G+                            +        A+ + 
Sbjct: 12  DLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQ 71
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSA 162
            DV+K ED  + V   ++ FG LD ++ NAGV  P+   E   D       +D N  G+ 
Sbjct: 72  GDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAF 129
Query: 163 YGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDI 219
            G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+    I
Sbjct: 130 LGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 189
Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
            +  + PG + + I   KF +   + +V+  I
Sbjct: 190 RVNNIGPGAMNTPINAEKFADPVQRADVESMI 221

>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 6/212 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+  KVV+ITG S+G+G+                            +        A+ + 
Sbjct: 12  DLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQ 71
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSA 162
            DV+K ED  + V   ++ FG LD ++ NAGV  P+   E   D       +D N  G+ 
Sbjct: 72  GDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAF 129
Query: 163 YGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDI 219
            G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+    I
Sbjct: 130 LGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 189
Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
            +  + PG + + I   KF +   + +V+  I
Sbjct: 190 RVNNIGPGAMNTPINAEKFADPVQRADVESMI 221

>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 6/212 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+  KVV+ITG S+G+G+                            +        A+ + 
Sbjct: 12  DLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQ 71
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSA 162
            DV+K ED  + V   ++ FG LD ++ NAGV  P+   E   D       +D N  G+ 
Sbjct: 72  GDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLD--NWNKVIDTNLTGAF 129
Query: 163 YGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDI 219
            G+  AI Y  +   KG +I ++S    +P P    Y ASK     + ETL +E+    I
Sbjct: 130 LGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 189
Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEI 251
            +  + PG + + I   KF +   + +V+  I
Sbjct: 190 RVNNIGPGAMNTPINAEKFADPVQRADVESMI 221

>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 15/196 (7%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GK  ++TG+S G+GK                            +         +    DV
Sbjct: 5   GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDV 64
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
              ED ++ V   M+ FGR+D LV NAG+    L      +D+ D+      ++ N   S
Sbjct: 65  KNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDV------LNTNLK-S 117
Query: 162 AYGTYFAIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
           AY    A+    LKQ  GKII + S AG +     + Y ASKA  I   +++  EF    
Sbjct: 118 AYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKG 177
Query: 219 IGITIVTPGLIESEIT 234
           I    V PG+I++++T
Sbjct: 178 IYCNAVAPGIIKTDMT 193

>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From Pseudomonas Sp. Lb400 Length = 277

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 96/246 (39%), Gaps = 23/246 (9%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           G+ VLITG +SG+G+                            + E       L I  DV
Sbjct: 5   GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLA----ELETDHGDNVLGIVGDV 60
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMD--------I 156
             +ED K      +  FG++D L+ NAG+       DY+   +  P  ++D        I
Sbjct: 61  RSLEDQKQAASRCVARFGKIDTLIPNAGIW------DYSTALVDLPEESLDAAFDEVFHI 114
Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           N  G  +     +P L  ++G +I   S AG+ P      Y A+K A + L   L  E  
Sbjct: 115 NVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELA 174
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVN 273
             + +  V  G I S++ G   L    K      + D+  S+LP+      EE   A V 
Sbjct: 175 PYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVF 234
Query: 274 SACRGD 279
            A RGD
Sbjct: 235 FATRGD 240

>pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain DehydrogenaseREDUCTASE 3 Length = 270

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDI 156
           P A+ I  DV++ +D K  V  T+  FGRLD +V NAG  P     + T        +++
Sbjct: 54  PGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLEL 113
Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE-- 214
           N  G+   T  A+PYL++++G +I ++S  G +   +   Y A+K A  A+ + L ++  
Sbjct: 114 NLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDES 173
Query: 215 -FGGDIGITIVTPGLI 229
            +G  + +  ++PG I
Sbjct: 174 PYG--VRVNCISPGNI 187

>pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV--PMCLFEDYTDITKPAPAMDIN 157
           L + ADV+   D    +  TME FG +D LV NAG+           T + +    M +N
Sbjct: 55  LRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVN 114
Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G   G    +P+ L Q  G I+ +AS A  +  P  S Y  SK A + L +++ V++ 
Sbjct: 115 VRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYA 174
Query: 217 GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQ-EIRDVQISLLP 260
           G  I    V PG+IE+ +T         +  +DQ E+RD  ++ +P
Sbjct: 175 GSGIRCNAVCPGMIETPMT---------QWRLDQPELRDQVLARIP 211

>pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 5/193 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ G   L+TG S GIG                             Q    G     ++ 
Sbjct: 6   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASV- 64
Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            D+S   + +  ++    HF G+L+ LV NAG+V     +DYT +   +  M INF  + 
Sbjct: 65  CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYT-VEDYSLIMSINFEAAY 123
Query: 163 YGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +  A P+LK + +G ++ ++S +G L  P  + Y A+K A   L   L  E+  D I 
Sbjct: 124 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIR 183
Query: 221 ITIVTPGLIESEI 233
           +  V PG+I + +
Sbjct: 184 VNGVGPGVIATSL 196

>pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 5/193 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ G   L+TG S GIG                             Q    G     ++ 
Sbjct: 5   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASV- 63
Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            D+S   + +  ++    HF G+L+ LV NAG+V     +DYT +   +  M INF  + 
Sbjct: 64  CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYT-VEDYSLIMSINFEAAY 122
Query: 163 YGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +  A P+LK + +G ++ ++S +G L  P  + Y A+K A   L   L  E+  D I 
Sbjct: 123 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIR 182
Query: 221 ITIVTPGLIESEI 233
           +  V PG+I + +
Sbjct: 183 VNGVGPGVIATSL 195

>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3- Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-356. Length = 281

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 21/245 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           G+V LITG +SG+G+                            + E+     A+ +  DV
Sbjct: 5   GEVALITGGASGLGR----ALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDV 60
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC-----LFEDYTDITKPAPAMD----IN 157
             ++D K   +  +  FG++D L+ NAG+         L ED  D      A D    +N
Sbjct: 61  RSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKID-----AAFDDIFHVN 115
Query: 158 FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             G  +     +P L  ++G ++   S AG+ P      Y A+K A + L   +  E   
Sbjct: 116 VKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP 175
Query: 218 DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNS 274
            + +  V PG + +++ G   L  + +      + D+  S+LP+      EE   A V  
Sbjct: 176 HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235
Query: 275 ACRGD 279
           A RGD
Sbjct: 236 ATRGD 240

>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 8/193 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E +AGK  L+TGA+ GIGK                                +G   A AI
Sbjct: 2   ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS---IGKK-ARAI 57
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            AD+S     K          G +D LV NA +VP   ++D  D+      +D+N  G+ 
Sbjct: 58  AADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDV-DLDHWRKIIDVNLTGTF 116
Query: 163 YGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
             T      ++     G++I +AS   +   P M+ Y A+K   I     L  E G  +I
Sbjct: 117 IVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNI 176
Query: 220 GITIVTPGLIESE 232
               VTPGLIES+
Sbjct: 177 TANAVTPGLIESD 189

>pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAY 163
           V K ED +  V + +   G +D LV+NA V P   F +  D T+      + +N   +  
Sbjct: 72  VGKAEDRERLVAMAVNLHGGVDILVSNAAVNP--FFGNIIDATEEVWDKILHVNVKATVL 129
Query: 164 GTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGI 221
            T   +P + K+  G +++V+S   + P P +  YN SK A + L + L VE    +I +
Sbjct: 130 MTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRV 189
Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD-R 280
             + PGLI++  +   +++K  K  + + +R  ++      P E+CA  IV+  C  D  
Sbjct: 190 NCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLG----NP-EDCA-GIVSFLCSEDAS 243
Query: 281 YLT 283
           Y+T
Sbjct: 244 YIT 246

>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 42  AEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           AE +A K VLITGAS+GIGK                           +  + +   F  A
Sbjct: 28  AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNA 87
Query: 102 ----IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG------VVPMCLFEDYTDITKPA 151
                  D+++ E  K F++   + F  +D LV NAG       V     ED  D+    
Sbjct: 88  KVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDV---- 143
Query: 152 PAMDINFWGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
              D N       T   +P  + +  G I+ + S AG    P  S Y ASK A  A  ++
Sbjct: 144 --FDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDS 201
Query: 211 LRVEF-GGDIGITIVTPGLIESEIT 234
           LR E     I + ++ PGL+E+E +
Sbjct: 202 LRKELINTKIRVILIAPGLVETEFS 226

>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 6/193 (3%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D++ + VL+TG + GIG+                            +   +G+   + + 
Sbjct: 38  DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVR 97
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS    C       ++ FG LD +  NAG+ P    +  T   + +  +D+N  G+ Y
Sbjct: 98  LDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTP-EQLSEVLDVNVKGTVY 156
Query: 164 GTYFAI-PYLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGGDIGI 221
                + P     +G++I+ +S  G +   P  S Y ASKAA++    T  +E     G+
Sbjct: 157 TVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIEL-APRGV 215
Query: 222 TI--VTPGLIESE 232
           T+  + PG I +E
Sbjct: 216 TVNAILPGNILTE 228

>pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From Sinorhizobium Meliloti 1021 Length = 283

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 10/247 (4%)
Query: 49  VVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPF-ALAIPADVS 107
           V LITGA SGIG+                           D  E++G+   A+A+ ADVS
Sbjct: 30  VALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVAD--EIVGAGGQAIALEADVS 87
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
                ++ V   +  FG LD +V NAG+  +    D     +    + +N  G+    + 
Sbjct: 88  DELQXRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHL 147
Query: 168 AIPYLKQTKGKIIVVASAAGW---LPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITI 223
            +PYLKQ  G  IVV S+         P  + Y A+KAA++A+ + L +E G   I +  
Sbjct: 148 TVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNA 207
Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP--TEECAKAIVNSACRGDRY 281
           V PG IE+ I+    L    +  +  E    Q+ +   QP  +E+ A+ I        R+
Sbjct: 208 VCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARH 267
Query: 282 LT-QPSW 287
           +T  P W
Sbjct: 268 VTGSPVW 274

>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 5/189 (2%)
Query: 49  VVLITGASSGIGKHXXXXXXXXXXXXXXX-XXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           VV++TGAS GIGK                             Q E  G   A+    DVS
Sbjct: 3   VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQ-AITFGGDVS 61
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
           K  D +  +   ++ +G +D +V NAG+    L       ++    +D+N  G    T  
Sbjct: 62  KEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKK-SQWDEVIDLNLTGVFLCTQA 120
Query: 168 AIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITIVT 225
           A    +K+ KG+II +AS  G +     + Y A+KA  I   +T   E    +I + +V 
Sbjct: 121 ATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVC 180
Query: 226 PGLIESEIT 234
           PG I S++T
Sbjct: 181 PGFIASDMT 189

>pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 9   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL--- 65
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NAG+    L      E+++DI      M+ N 
Sbjct: 66  -NVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDI------METNL 118
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+    +K+ +G+II V S  G +     + Y A+KA  I   +++  E  
Sbjct: 119 T-SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVA 177
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE+++T  K LN
Sbjct: 178 SR-GVTVNTVAPGFIETDMT--KALN 200

>pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 9   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL--- 65
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NAG+    L      E+++DI      M+ N 
Sbjct: 66  -NVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDI------METNL 118
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+    +K+ +G+II V S  G +     + Y A+KA  I   +++  E  
Sbjct: 119 T-SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVA 177
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE+++T  K LN
Sbjct: 178 SR-GVTVNTVAPGAIETDMT--KALN 200

>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 15/195 (7%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           K  L+TGAS GIG+                            +        + AI A+V+
Sbjct: 11  KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVA 70
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
             ++ K  +   +  FG LD LV NAG+    L      +++ D+      +D N  G  
Sbjct: 71  DADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDV------IDTNLKGVF 124
Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
                A P  L+Q  G II ++S  G +  P  + Y A+KA  I L ++   E     GI
Sbjct: 125 NCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASR-GI 183
Query: 222 TI--VTPGLIESEIT 234
           T+  V PG I S++T
Sbjct: 184 TVNAVAPGFIVSDMT 198

>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW 159
           L +  DVS+  D + F    +  FGR D LV NAG+ P+  F++ T   +     +IN  
Sbjct: 57  LTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELT-FEQWKKTFEINVD 115
Query: 160 GSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
                    +P +K+   G+II + S   WL     + Y ++KAA I     L  + G D
Sbjct: 116 SGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKD 175
Query: 219 IGITI--VTPGLIESEIT 234
            GIT+  + P L+ +  T
Sbjct: 176 -GITVNAIAPSLVRTATT 192

>pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+  ED +  V    E FG +D LV NAG +   +F +   + +    ++IN  G   G
Sbjct: 59  DVTIEEDWQRVVAYAREEFGSVDGLVNNAG-ISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 165 TYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
               IP +K   G  IV ++SAAG +     S Y ASK     L +   VE G D I + 
Sbjct: 118 MKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVN 177
Query: 223 IVTPGLIESEIT 234
            V PG+  + +T
Sbjct: 178 SVHPGMTYTPMT 189

>pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV+  ED +  V    E FG +D LV NAG +   +F +   + +    ++IN  G   G
Sbjct: 59  DVTIEEDWQRVVAYAREEFGSVDGLVNNAG-ISTGMFLETESVERFRKVVEINLTGVFIG 117
Query: 165 TYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
               IP +K   G  IV ++SAAG +     S Y ASK     L +   VE G D I + 
Sbjct: 118 MKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVN 177
Query: 223 IVTPGLIESEIT 234
            V PG+  + +T
Sbjct: 178 SVHPGMTYTPMT 189

>pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' Length = 257

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW 159
           L +  DV   +D +  ++   E FGR+D L+ NA    +C          PA  + +N W
Sbjct: 58  LTVQXDVRNTDDIQKXIEQIDEKFGRIDILINNAAGNFIC----------PAEDLSVNGW 107
Query: 160 GSA-----YGTYFAIPYL------KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
            S       GT++    +      K  KG II   +   W   P +    A+KA  +A  
Sbjct: 108 NSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINXVATYAWDAGPGVIHSAAAKAGVLAXT 167
Query: 209 ETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV 261
           +TL VE+G   GI +  + PG IE   TGG       KL + +E     I  +P+
Sbjct: 168 KTLAVEWGRKYGIRVNAIAPGPIER--TGGA-----DKLWISEEXAKRTIQSVPL 215

>pdb|3KZV|A Chain A, The Crystal Structure Of A Cytoplasmic Protein With Unknown Function From Saccharomyces Cerevisiae Length = 254

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 3/187 (1%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV+L+TG S GIGK                            + E  G  F   +  D+
Sbjct: 2   GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLK-EKYGDRF-FYVVGDI 59
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           ++    K  V+  ++  G++D LV NAGV+      +  D+       DINF+       
Sbjct: 60  TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVG 119
Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTP 226
            A+P LK+T G ++ V+S A  +       Y +SKAA      TL  E    +    V P
Sbjct: 120 IALPELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE-ERQVKAIAVAP 178
Query: 227 GLIESEI 233
           G++++++
Sbjct: 179 GIVDTDM 185

>pdb|3TSC|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Map_2410 From Mycobacterium Paratuberculosis Bound To Nad Length = 277

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFW 159
           D    +  +  VD  +   GRLD +V NAGV     +     ED+ D+      MDIN  
Sbjct: 81  DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDV------MDINVT 134
Query: 160 GSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           G+        P + +    G II+++SAAG    P M  Y ASK A   L      E G 
Sbjct: 135 GTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLARAFAAELGK 194
Query: 218 -DIGITIVTPGLIESEITGGKFLNKNGK-LEVDQEIRDVQISLLP--VQPTEECAKAIVN 273
             I +  V PG + + +  G  +   G+ +E + ++  V    LP  V   E+ A  +  
Sbjct: 195 HSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCW 254
Query: 274 SACRGDRYLT 283
            A    R +T
Sbjct: 255 LASDESRKVT 264

>pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 7/195 (3%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D++GK  LITGAS+GIGK                           D+   +G   AL I 
Sbjct: 29  DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK-ALPIR 87
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV++ +  +  +D      G +D  V NAG+V +    D   + +     D N  G   
Sbjct: 88  CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMP-LEEFQRIQDTNVTGVFL 146
Query: 164 GTYFAIPYL--KQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVEFG-GD 218
               A   +  +   G II  AS +G +   P ++S Y  SKAA + L + + VE     
Sbjct: 147 TAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQ 206
Query: 219 IGITIVTPGLIESEI 233
           I +  V+PG I +E+
Sbjct: 207 IRVNSVSPGYIRTEL 221

>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 8/193 (4%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E +AGK  L+TGA+ GIGK                                +G   A AI
Sbjct: 2   ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS---IGKK-ARAI 57
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            AD+S     K          G +D LV NA +VP   ++D  D+      +D+N  G+ 
Sbjct: 58  AADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDV-DLDHWRKIIDVNLTGTF 116
Query: 163 YGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
             T       +     G++I +AS   +   P  + Y A+K   I     L  E G  +I
Sbjct: 117 IVTRAGTDQXRAAGKAGRVISIASNTFFAGTPNXAAYVAAKGGVIGFTRALATELGKYNI 176
Query: 220 GITIVTPGLIESE 232
               VTPGLIES+
Sbjct: 177 TANAVTPGLIESD 189

>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 8/188 (4%)
Query: 50  VLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSKV 109
           VLITGAS GIG+                             AEL G   AL +P DV + 
Sbjct: 8   VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA--AELEG---ALPLPGDVREE 62
Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI 169
            D    V    E FG L  LV NAGV  M    + T + +    +D N  G+  G   A+
Sbjct: 63  GDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELT-LEEWRLVLDTNLTGAFLGIRHAV 121
Query: 170 P-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGITIVTPG 227
           P  L++  G I+ V S AG  P    + YNASK   + L     ++    ++ +  V PG
Sbjct: 122 PALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPG 181
Query: 228 LIESEITG 235
            +++   G
Sbjct: 182 SVDTGFAG 189

>pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 266

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 81/207 (39%), Gaps = 14/207 (6%)
Query: 47  GKVVLITGAS-SGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           GKVVL+T A+ +GIG                            DQ   +G     A+  D
Sbjct: 22  GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCD 81
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+  E     +  T+E  GRLD LV NAG+       D TD  +    +++        T
Sbjct: 82  VTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTD-EEWDRVLNVTLTSVMRAT 140
Query: 166 YFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL---RVEFGGDIG 220
             A+ Y +     G I+  AS  GW      S Y A+KA  +AL        VEFG  + 
Sbjct: 141 RAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFG--VR 198
Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEV 247
           I  V+P +        KFL K    E+
Sbjct: 199 INAVSPSIARH-----KFLEKTSSSEL 220

>pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 15/195 (7%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           K  L+TGAS GIG+                            +        + AI A+V+
Sbjct: 5   KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVA 64
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
             ++ K  +   +  FG LD LV NAG+    L      +++ D+      +D N  G  
Sbjct: 65  DADEVKAXIKEVVSQFGSLDVLVNNAGITRDNLLXRXKEQEWDDV------IDTNLKGVF 118
Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
                A P  L+Q  G II ++S  G +  P  + Y A+KA  I L ++   E     GI
Sbjct: 119 NCIQKATPQXLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASR-GI 177
Query: 222 TI--VTPGLIESEIT 234
           T+  V PG I S+ T
Sbjct: 178 TVNAVAPGFIVSDXT 192

>pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 9   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL--- 65
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NAG+    L      E+++DI      M+ N 
Sbjct: 66  -NVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDI------METNL 118
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+    +K+ +G+II V S  G +     + + A+KA  I   +++  E  
Sbjct: 119 T-SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANFAAAKAGVIGFTKSMAREVA 177
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE+++T  K LN
Sbjct: 178 SR-GVTVNTVAPGFIETDMT--KALN 200

>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 90/237 (37%), Gaps = 24/237 (10%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KVVLITG S GIG                             +        ALA+ ADV+
Sbjct: 26  KVVLITGGSRGIGAASALLAARQGYAVAVNYASNSAAADEVVRQIREAGGQALAVQADVA 85
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
           K  +     +      GRL  LV NAGVV      D   + +     +IN +GS      
Sbjct: 86  KEREVLAXFETVDAQLGRLSALVNNAGVVDQTTRVDGITLERLQRXFEINVFGSFLCARE 145
Query: 168 AIPYLKQ----TKGKIIVVASAAGWLPPPRMSF-YNASKAA----KIALYETLRVEFGGD 218
           A+         + G I+ V+SAA  L  P     Y A+K A     + L + +  E    
Sbjct: 146 AVKRXSTRYGGSGGSIVNVSSAAARLGSPGQYVDYAAAKGAIDTFTLGLAKEVATE---G 202
Query: 219 IGITIVTPGLIESEI-TGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIV 272
           I +  V PG+IE++I   G   N+          RDV  Q+         E A+AIV
Sbjct: 203 IRVNAVRPGIIETDIHASGGLPNR---------ARDVAPQVPXQRAGTAREVAEAIV 250

>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+ G+  L+TGA+ G+G+                             AEL    F    P
Sbjct: 4   DLTGRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELA--AELGERIFVF--P 59
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           A++S  E  K       E  G +D LV NAG+    LF   +D    A  + +N   S +
Sbjct: 60  ANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDA-VLTVNLT-SVF 117
Query: 164 GTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
                +  P +++  G+II + S  G    P  + Y ASKA  I   ++L  E    ++ 
Sbjct: 118 NLTRELTHPMMRRRNGRIINITSIVGVTGNPGQANYCASKAGLIGFSKSLAQEIASRNVT 177
Query: 221 ITIVTPGLIESEITG 235
           +  + PG IES +TG
Sbjct: 178 VNCIAPGFIESAMTG 192

>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+ G+  L+TGA+ G+G+                             AEL    F    P
Sbjct: 7   DLTGRKALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELA--AELGERIFVF--P 62
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           A++S  E  K       E  G +D LV NAG+    LF   +D    A  + +N   S +
Sbjct: 63  ANLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDA-VLTVNLT-SVF 120
Query: 164 GTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
                +  P +++  G+II + S  G    P  + Y ASKA  I   ++L  E    ++ 
Sbjct: 121 NLTRELTHPMMRRRNGRIINITSIVGVTGNPGQANYCASKAGLIGFSKSLAQEIASRNVT 180
Query: 221 ITIVTPGLIESEITG 235
           +  + PG IES +TG
Sbjct: 181 VNCIAPGFIESAMTG 195

>pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein] Reductase Ttha0415 From Thermus Thermophilus Length = 245

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 95  GSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM 154
           GSP    + A++ + E     V    E  G LD LV NAG+    L     D    A  +
Sbjct: 50  GSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEA-VL 108
Query: 155 DINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           + N       T  A+  + + + G+I+ + S  G L  P  + Y ASKA  I     +  
Sbjct: 109 EANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAK 168
Query: 214 EFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEEC 267
           E+    GIT+  V PG IE+E+T            + QE+++  +  +P     +P EE 
Sbjct: 169 EY-AQRGITVNAVAPGFIETEMT----------ERLPQEVKEAYLKQIPAGRFGRP-EEV 216
Query: 268 AKAI 271
           A+A+
Sbjct: 217 AEAV 220

>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           + AD+S  +  + F+    E  G LD LV NAG+      E++  + K    + +N    
Sbjct: 60  LNADLSDAQATRDFIAKAAEALGGLDILVNNAGIQHTAPIEEFP-VDKWNAIIALNLSAV 118
Query: 162 AYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
            +GT  A+P + KQ  G+II +ASA G +     S Y A+K   + L +   +E  G  G
Sbjct: 119 FHGTAAALPIMQKQGWGRIINIASAHGLVASVNKSAYVAAKHGVVGLTKVTALENAGK-G 177
Query: 221 ITI--VTPG-----LIESEITGGKFLNKNGKLEVDQEIRDV----QISLLPVQPTEECAK 269
           IT   + PG     L+E +I   + +++   ++++   R++    Q SL  V P +    
Sbjct: 178 ITCNAICPGWVRTPLVEKQI---EAISQQKGIDIEAAARELLAEKQPSLQFVTPEQLGGA 234
Query: 270 AIVNSACRGDR 280
           A+  S+   D+
Sbjct: 235 AVFLSSAAADQ 245

>pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 9   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL--- 65
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NA +    L      E+++DI      M+ N 
Sbjct: 66  -NVTNPESIEAVLKAITDEFGGVDILVNNAAITRDNLLMRMKEEEWSDI------METNL 118
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+    +K+ +G+II V S  G +     + Y A+KA  I   +++  E  
Sbjct: 119 T-SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVA 177
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE+++T  K LN
Sbjct: 178 SR-GVTVNTVAPGFIETDMT--KALN 200

>pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 12/196 (6%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+ G+ V++TG + GIG+                              + +GS   + + 
Sbjct: 7   DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS    C       +E FG +D +  NAGV P     D    T     ++  F  +  
Sbjct: 67  TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFP-----DAPLATMTPEQLNGIFAVNVN 121
Query: 164 GTYFAI-----PYLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFG- 216
           GT++A+       +    G++++ +S  G +   P  S Y A+KAA++    T  +E   
Sbjct: 122 GTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
Query: 217 GDIGITIVTPGLIESE 232
             I +  + PG I +E
Sbjct: 182 HKITVNAIMPGNIMTE 197

>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 9   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL--- 65
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NA +    L      E+++DI      M+ N 
Sbjct: 66  -NVTNPESIEAVLKAITDEFGGVDILVNNADITRDNLLMRMKEEEWSDI------METNL 118
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+    +K+ +G+II V S  G +     + Y A+KA  I   +++  E  
Sbjct: 119 T-SIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVA 177
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE+++T  K LN
Sbjct: 178 SR-GVTVNTVAPGFIETDMT--KALN 200

>pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From Mycobacterium Paratuberculosis Bound To Nicotinamide Adenine Dinucleotide Length = 280

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV      +  V   ME FGRLD +V NAGV+      + TD  +    + +N  G+   
Sbjct: 85  DVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTD-EQWDTVIGVNLTGTWRT 143
Query: 165 TYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
               +P + +    G I+VV+S+AG    P    Y+ASK    AL  TL +E G
Sbjct: 144 LRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELG 197

>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 80/203 (39%), Gaps = 23/203 (11%)
Query: 42  AEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXX----XXXXXXXXXXXXXDQAELMGSP 97
           A  V GKV L+TGA+ GIG+                               +Q E   + 
Sbjct: 2   AHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTL 61
Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
           F   I  DV+  +  +      ++HFGRLD LV NAGV     +E           + IN
Sbjct: 62  F---IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWE---------KTLQIN 109
Query: 158 FWGSAYGTYFAIPYL-KQTKGK---IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
                 GTY  + Y+ KQ  G+   II ++S AG +P  +   Y ASK   +    +  +
Sbjct: 110 LVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAL 169
Query: 214 E---FGGDIGITIVTPGLIESEI 233
                   + +  + PG + + I
Sbjct: 170 AANLMNSGVRLNAICPGFVNTAI 192

>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +S+ E  K    V     G+L+ LV NAGVV     +D+T+       M  NF  + + +
Sbjct: 80  LSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTE-KDYNIIMGTNFEAAYHLS 138
Query: 166 YFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
             A P LK ++ G +I ++S AG+   P +S Y+ASK A   + ++L  E+  D I +  
Sbjct: 139 QIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNS 198
Query: 224 VTPGLI 229
           V PG+I
Sbjct: 199 VAPGVI 204

>pdb|3UCX|A Chain A, The Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 264

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
           AL++  D++      H VD TM+ +GR+D ++ NA  VP       T       A+++  
Sbjct: 62  ALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTV 121
Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-G 217
           +G+        P L+++KG ++ V S        +   Y  +K+A +A+ +TL  E G  
Sbjct: 122 FGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEK 181
Query: 218 DIGITIVTPGLIESEITGGKFLNKNGK 244
            I +  V PG I        F ++ GK
Sbjct: 182 GIRVNSVLPGYIWGGTLKSYFEHQAGK 208

>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+ G+V L+TG S G+G                             +         +A  
Sbjct: 18  DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS  E+ K  ++   E FG+LD +V  AG+      E++  + +    +++N +G+ Y
Sbjct: 78  CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFP-LDEFRQVIEVNLFGTYY 136
Query: 164 GTYFAIPYLKQTKG-KIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
               A   L+++    II + S     +  P +S Y ASK    +L + L  E+G   I 
Sbjct: 137 VCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIR 196
Query: 221 ITIVTPGLIESEITGGKF 238
           + ++ PG   +++T   F
Sbjct: 197 VNVIAPGWYRTKMTEAVF 214

>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 9/189 (4%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KV L+TGA  GIGK                            +    G   A+A+  DVS
Sbjct: 3   KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVS 61
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSAYGTY 166
             +     V+   +  G  D +V NAGV P    E  T +I       +IN  G  +G  
Sbjct: 62  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVD--KVYNINVKGVIWGIQ 119
Query: 167 FAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI- 223
            A+   K+    GKII   S AG +  P ++ Y++SK A   L +T   +    +GIT+ 
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDL-APLGITVN 178
Query: 224 -VTPGLIES 231
              PG++++
Sbjct: 179 GYCPGIVKT 187

>pdb|3N74|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Brucella Melitensis Length = 261

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 9/174 (5%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV LITGA SG G+                            +        ALA+ AD+
Sbjct: 9   GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAVAADI 64
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           SK  D    V+  +  FG++D LV NAG+       +  +  +    + +N  G    T 
Sbjct: 65  SKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTS 124
Query: 167 FAIPYLKQTKGK-----IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
             IP+ K+   K     I+ VAS     P P +++YNA+K   +++ + L +E 
Sbjct: 125 KLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIEL 178

>pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 14/192 (7%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KV ++TG+  GIG+                            Q    G   A+++  DVS
Sbjct: 10  KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGT-AISVAVDVS 68
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP---APAMDINFWGSAYG 164
             E  K   D T+  FG +D+LV NA +       D+     P      M +N  G+ + 
Sbjct: 69  DPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKL-DFLLTIDPEYYKKFMSVNLDGALWC 127
Query: 165 TYFAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
           T     Y K TK   G I+  +S A WL     ++Y  +K     L + L  E GG +I 
Sbjct: 128 TRAV--YKKMTKRGGGAIVNQSSTAAWLYS---NYYGLAKVGINGLTQQLSRELGGRNIR 182
Query: 221 ITIVTPGLIESE 232
           I  + PG I++E
Sbjct: 183 INAIAPGPIDTE 194

>pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID Dehydrogenase Length = 253

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 15/166 (9%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV L+TG +SG+G                              AEL     ++ +  DV
Sbjct: 6   GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA--AEL--GERSMFVRHDV 61
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-----PMCLFEDYTDITKPAPAMDINFWGS 161
           S   D    +       G L+ LV NAG++          ED++ + K      IN    
Sbjct: 62  SSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLK------INTESV 115
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
             G    I  +K+T G II +AS + WLP  + + Y+ASKAA  AL
Sbjct: 116 FIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSAL 161

>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+  KVV++TGAS GIG+                           D  E         I 
Sbjct: 5   DLRDKVVIVTGASMGIGR--------AIAERFVDEGSKVIDLSIHDPGEAKYD----HIE 52
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  +  K  +D   + +G +  LV NAG+      E  + + +    +D+N +G  Y
Sbjct: 53  CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMS-MGEWRRIIDVNLFGYYY 111
Query: 164 GTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
            + FAIPY+ +++   IV ++S    +     S Y  SK A I L +++ +++   +   
Sbjct: 112 ASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCN 171
Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQE 250
            V P  I++ +     + K  +LEV  +
Sbjct: 172 AVCPATIDTPL-----VRKAAELEVGSD 194

>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+  KVV++TGAS GIG+                           D  E         I 
Sbjct: 12  DLRDKVVIVTGASMGIGR--------AIAERFVDEGSKVIDLSIHDPGEAKYD----HIE 59
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  +  K  +D   + +G +  LV NAG+      E  + + +    +D+N +G  Y
Sbjct: 60  CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMS-MGEWRRIIDVNLFGYYY 118
Query: 164 GTYFAIPYLKQTKG-KIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
            + FAIPY+ +++   I+ ++S    +     S Y  SK A I L +++ +++   +   
Sbjct: 119 ASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCN 178
Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQE 250
            V P  I++ +     + K  +LEV  +
Sbjct: 179 AVCPATIDTPL-----VRKAAELEVGSD 201

>pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI--PA 104
           GK+ L+TGAS GIG+                           D     G    L +  PA
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPA 64
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFW 159
            +  V      ++     FG +D LV NAG+    L      E++ DI      ++ N  
Sbjct: 65  SIESV------LEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDI------IETNLS 112
Query: 160 GSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            S +    A+    +K+  G+II + S  G +     + Y A+KA  I   ++L  E   
Sbjct: 113 -SVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVAS 171
Query: 218 -DIGITIVTPGLIESEIT 234
             I + +V PG IE+++T
Sbjct: 172 RGITVNVVAPGFIETDMT 189

>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 19/197 (9%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D+ GK  LITGASSGIG                            ++ + +G+       
Sbjct: 11  DLTGKTSLITGASSGIGS-------AIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYT 63
Query: 104 ADVSKV---EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
            +V  +   E+C + +  T      LD LV NAG+    L     D       +DIN   
Sbjct: 64  IEVCNLANKEECSNLISKT----SNLDILVCNAGITSDTLAIRMKD-QDFDKVIDINLKA 118
Query: 161 SAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
           +      AI  + Q + G+II ++S  G    P  + Y ASKA  I + ++L  E     
Sbjct: 119 NFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATR- 177
Query: 220 GITI--VTPGLIESEIT 234
           GIT+  V PG I+S++T
Sbjct: 178 GITVNAVAPGFIKSDMT 194

>pdb|4GKB|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog (Target Efi- 505321) From Burkholderia Multivorans, Unliganded Structure Length = 258

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 96  SPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD 155
            P A  +P ++     C+  V  T+  FGRLD LV NAGV      +   D    +   +
Sbjct: 54  QPRATYLPVELQDDAQCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERN 113
Query: 156 -INFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
            I+++  A   ++ +P+LK T+G I+ ++S          S Y ASK A++AL
Sbjct: 114 LIHYYAMA---HYCVPHLKATRGAIVNISSKTAVTGQGNTSGYCASKGAQLAL 163

>pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV++    K  VD  +  FG L  LV NAG++ +   EDY  +T+    +D+N  G   G
Sbjct: 61  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYA-LTEWQRILDVNLTGVFLG 119
Query: 165 TYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGIT 222
               +  +K+  +G II ++S  G         Y A+K A   L ++  +E G   I + 
Sbjct: 120 IRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVN 179
Query: 223 IVTPGLIESEIT 234
            + PGL+++ +T
Sbjct: 180 SIHPGLVKTPMT 191

>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAM 154
           LA+  D++  E  +       E  G ++ L+ NAGV    L      ED+T +      +
Sbjct: 62  LAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSV------V 115
Query: 155 DINFWGSAYGTYFA-IPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           + N  G+      A    L+  KG++++++S  G L     + Y ASKA  +    +L  
Sbjct: 116 ETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLAR 175
Query: 214 EFGG-DIGITIVTPGLIESEIT 234
           E G  +I   +V PG +++++T
Sbjct: 176 ELGSRNITFNVVAPGFVDTDMT 197

>pdb|2BGK|A Chain A, X-Ray Structure Of Apo-Secoisolariciresinol Dehydrogenase Length = 278

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 13/198 (6%)
Query: 94  MGSPFALA-IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV---PMCLFEDYTDITK 149
           +GSP  ++ +  DV+K ED ++ VD T+   G+LD +  N GV+   P  + E   +  K
Sbjct: 60  IGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFK 119
Query: 150 PAPAMDINFWGS-AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKIAL 207
               MDIN +G+     + A   +   KG I+  AS + +     +S  Y A+K A + L
Sbjct: 120 --RVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGL 177
Query: 208 YETLRVEFGG-DIGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRDVQISLLPVQPTE 265
             +L  E G   I +  V+P ++ S +    F   + ++ E+  +  +++ +LL     E
Sbjct: 178 TTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRA---E 234
Query: 266 ECAKAIVNSACRGDRYLT 283
           + A A+   A    +Y++
Sbjct: 235 DVADAVAYLAGDESKYVS 252

>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW 159
           +A  ADV  +   +  VD  +  FG +D LV+N G+         TD  + +  +  N  
Sbjct: 110 IARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTD-QQWSDILQTNLI 168
Query: 160 GSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           G+ +     +P +  +   G +I V+S  G    P  S Y ASK     L  +L  E G 
Sbjct: 169 GAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLMLSLANEVGR 228
Query: 218 -DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD------VQISLLP---VQPTEEC 267
            +I +  V PG + +E+   + L K     ++   R+       Q++LLP   V+P E+ 
Sbjct: 229 HNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLPIPWVEP-EDV 287
Query: 268 AKAIVNSACRGDRYL 282
           + A+   A    RY+
Sbjct: 288 SNAVAWLASDEARYI 302

>pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 71/194 (36%), Gaps = 12/194 (6%)
Query: 49  VVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVSK 108
           VVL+TG S GIG                              A       A+AIP DV  
Sbjct: 28  VVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN 87
Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFA 168
             D           FGRLD LV NAG+V      D   + +    + +N  GS      A
Sbjct: 88  AADIAAXFSAVDRQFGRLDGLVNNAGIVDYPQRVDEXSVERIERXLRVNVTGSILCAAEA 147
Query: 169 IPYLKQ----TKGKIIVVASAAGWLPPPRMSF-YNASKAA----KIALYETLRVEFGGDI 219
           +    +      G I+ V+S A  L        Y ASKAA     I L   +  E    I
Sbjct: 148 VRRXSRLYSGQGGAIVNVSSXAAILGSATQYVDYAASKAAIDTFTIGLAREVAAE---GI 204
Query: 220 GITIVTPGLIESEI 233
            +  V PG+IE+++
Sbjct: 205 RVNAVRPGIIETDL 218

>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 21/198 (10%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQA--ELMGSPF-ALAIP 103
           G+  ++TG +SGIG                            +QA   L G  F A  + 
Sbjct: 31  GRAAVVTGGASGIG----LATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVV 86
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV---PMCLF--EDYTDITKPAPAMDINF 158
            DV  +++     D      G +D + +NAG+V   P+     +D+  +      +DI+ 
Sbjct: 87  CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWV------IDIDL 140
Query: 159 WGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           WGS +     +P L  + T G I   AS AG +P   +  Y  +K   + L ETL  E  
Sbjct: 141 WGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVK 200
Query: 217 -GDIGITIVTPGLIESEI 233
              IG++++ P ++E+++
Sbjct: 201 PNGIGVSVLCPMVVETKL 218

>pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 20/251 (7%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           D++G+  ++TG S GIG                               E  G     A+ 
Sbjct: 9   DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGG----FAVE 64
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+K       +   ++  G  D L  NAGV  M    D TD        D NF  +A 
Sbjct: 65  VDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITD-----EEWDFNFDVNAR 119
Query: 164 GTYFAIP------YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           G + A            TKG I+  AS A  +  P ++ Y+ASK A     + L  E   
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAP 179
Query: 217 GDIGITIVTPGLIESEITGGKFL-NKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIV 272
            +I +  V PG +++ +   + +     +    + +R   +SL P   ++  E+ A  +V
Sbjct: 180 KNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVV 239
Query: 273 NSACRGDRYLT 283
             A    R++T
Sbjct: 240 FLASDAARFMT 250

>pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI--PA 104
           GK+ L+TGAS GIG+                           D     G    L +  PA
Sbjct: 5   GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPA 64
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFW 159
            +  V      ++     FG +D LV NAG+    L      E++ DI      ++ N  
Sbjct: 65  SIESV------LEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDI------IETNLS 112
Query: 160 GSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            S +    A+    +K+  G+II + S  G +     + + A+KA  I   ++L  E   
Sbjct: 113 -SVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANFAAAKAGLIGFSKSLAREVAS 171
Query: 218 -DIGITIVTPGLIESEIT 234
             I + +V PG IE+++T
Sbjct: 172 RGITVNVVAPGFIETDMT 189

>pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 92  ELMGSPFALAIPA---DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDIT 148
           E +G  F +   A   DVS  +     +       G +  L+ NAGV    + +  T++T
Sbjct: 56  EKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGV---SVVKPATELT 112
Query: 149 KP--APAMDINFWGSAYGTYFAIPYL---KQTKGKIIVVASAAGWLPPPR-------MSF 196
               A   D+N +G  + T  A+  L   KQ KG I+V +S +  +             F
Sbjct: 113 HEDFAFVYDVNVFG-VFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVF 171
Query: 197 YNASKAAKIALYETLRVEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ 255
           YN+SKAA   L + L  E+    I +  ++PG          ++N +    +D++IRD Q
Sbjct: 172 YNSSKAACSNLVKGLAAEWASAGIRVNALSPG----------YVNTDQTAHMDKKIRDHQ 221
Query: 256 ISLLPV----QPTEECAKAIV 272
            S +P+    QP E   +AI+
Sbjct: 222 ASNIPLNRFAQPEEMTGQAIL 242

>pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 12/187 (6%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXX-XXXXXXXXXXXDQAELMGSPFALAIPAD 105
           GKV L+TG+  GIG                              + + +GS  A+AI AD
Sbjct: 18  GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSD-AIAIKAD 76
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           + +V +     D  + HFG LD  V+N+GVV     +D T+        D  F  +  G 
Sbjct: 77  IRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTE-----EEFDRVFSLNTRGQ 131
Query: 166 YFAI--PYLKQTKGKIIVVASA--AGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
           +F     Y   T+G  IV+ S+  +     P+ S Y+ SK A  +       + G   I 
Sbjct: 132 FFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKIT 191
Query: 221 ITIVTPG 227
           +  V PG
Sbjct: 192 VNAVAPG 198

>pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           DV++    K  VD  +  FG L  LV NAG++ +   EDY  +T+    +D+N  G   G
Sbjct: 61  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYA-LTEWQRILDVNLTGVFLG 119
Query: 165 TYFAI-PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGIT 222
               + P  +  +G II ++S  G         Y A+K A   L ++  +E G   I + 
Sbjct: 120 IRAVVKPXKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVN 179
Query: 223 IVTPGLIESEIT 234
            + PGL+++  T
Sbjct: 180 SIHPGLVKTPXT 191

>pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXX----XXXXXDQAELMGSPFALA 101
           + KV L+TGASSG G+                               D+AE        A
Sbjct: 4   SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAE--------A 55
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           I  DV+  E         +  +GR+D LV NAG   +  FE+ T+  +     +++ +G 
Sbjct: 56  ISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTE-RELRDLFELHVFGP 114
Query: 162 AYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGG 217
           A  T   +P  ++   G ++ ++S  G L     S Y+A+KAA   L E L  E   FG 
Sbjct: 115 ARLTRALLPQXRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFG- 173
Query: 218 DIGITIVTPGLIESEITG 235
            I + IV PG   + + G
Sbjct: 174 -IKVLIVEPGAFRTNLFG 190

>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase Length = 262

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAY 163
           DV+  E     VD  +  FG++D L  NAG        +DY      A  + IN  G A+
Sbjct: 64  DVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPS-DDFARVLTINVTG-AF 121
Query: 164 GTYFAIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
               A+    + Q  G+I+  AS AG   PP M+ Y  SK A IAL ET  ++    +I 
Sbjct: 122 HVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIR 181
Query: 221 ITIVTPGLI 229
           +  ++PG +
Sbjct: 182 VNAISPGYM 190

>pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 7/191 (3%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQ--AELMGSPFALAIP 103
           A KV +ITG+S+GIG+                            Q  A  +      ++ 
Sbjct: 5   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG-VVPMCLFEDYT--DITKPAPAMDINFWG 160
           ADV+        +  T+  FG+LD LV NAG  +P    +  T   I      +++N   
Sbjct: 65  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 124
Query: 161 SAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGD 218
               T  A+P+L  TKG+I+ ++S A+G    P   +Y+ +KAA         ++     
Sbjct: 125 VIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHG 184
Query: 219 IGITIVTPGLI 229
           I +  ++PGL+
Sbjct: 185 IRVNSISPGLV 195

>pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GK  LITG++ GIG+                            QA     P A A+  DV
Sbjct: 8   GKSALITGSARGIGR----AFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQXDV 63
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           ++ +     +  T+EH G LD LV NA +  +       +IT+   + +  F  +  GT 
Sbjct: 64  TRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPI---VEITR--ESYEKLFAINVAGTL 118
Query: 167 FAIPYLKQTK------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDI 219
           F +    +        GKII  AS AG      ++ Y A+KAA I+L ++  ++     I
Sbjct: 119 FTLQAAARQXIAQGRGGKIINXASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRI 178
Query: 220 GITIVTPGLIESE 232
            +  + PG+++ E
Sbjct: 179 NVNAIAPGVVDGE 191

>pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 84/206 (40%), Gaps = 23/206 (11%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK                           D     G   AL   
Sbjct: 6   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGXAL--- 62
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NAG+    L      E+++DI       + N 
Sbjct: 63  -NVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLXRXKEEEWSDI------XETNL 115
Query: 159 WGSAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             S +    A+     K+ +G+II V S  G       + Y A+KA  I   ++   E  
Sbjct: 116 T-SIFRLSKAVLRGXXKKRQGRIINVGSVVGTXGNAGQANYAAAKAGVIGFTKSXAREV- 173
Query: 217 GDIGITI--VTPGLIESEITGGKFLN 240
              G+T+  V PG IE++ T  K LN
Sbjct: 174 ASRGVTVNTVAPGFIETDXT--KALN 197

>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 14/194 (7%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KV L+TGA  GIG+                           D+ +  G   +     DVS
Sbjct: 45  KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESS-GYAGDVS 103
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
           K E+    ++  +     +D LV NAG+    LF     +++ D+ +       N     
Sbjct: 104 KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRT------NLNSLF 157
Query: 163 YGTY-FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
           Y T   +   +    G+II ++S  G       + Y++SKA  I   ++L  E    +I 
Sbjct: 158 YITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNIT 217
Query: 221 ITIVTPGLIESEIT 234
           +  + PG I S++T
Sbjct: 218 VNAIAPGFISSDMT 231

>pdb|3SX2|A Chain A, Crystal Structure Of A Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Paratuberculosis In Complex With Nad Length = 278

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED-YTDITKPAPAMDINF 158
           +A  ADV   E     +   ++  GRLD +V NAG+ PM   +D + D+      +D+N 
Sbjct: 77  VARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDV------IDVNL 130
Query: 159 WGSAYGTYFAIPYL--KQTKGKIIVVASAAGWL----PPPRMSFYNASKAAKIALYETLR 212
            G  +    AIP L  + T G I++++S+AG        P    Y A+K   + L     
Sbjct: 131 TGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVVGLMRVYA 190
Query: 213 VEFGGD-IGITIVTPGLIESEITGGKFLNK-NGKLEVDQEIRDVQISLLPVQ--PTEECA 268
               G  I +  + P  +E+ +   +F  +   K+    +      + +PV+    E+ A
Sbjct: 191 NLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVA 250
Query: 269 KAIVNSACRGDRYLT 283
            A+        RY+T
Sbjct: 251 NAVAWLVSDQARYIT 265

>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With Nadp And Sepiapterin Length = 244

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           I AD+S + D +      +E +G +D LV NAGV       D T+        D     +
Sbjct: 63  ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTE-----EDFDYTMNTN 117
Query: 162 AYGTYFAIPYL-----KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV-EF 215
             GT+F    L     +Q  G I  + S A        S Y  SK  +  L ET+R+   
Sbjct: 118 LKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYAR 177
Query: 216 GGDIGITIVTPGLIESEITG 235
             ++ IT V PG + + + G
Sbjct: 178 KCNVRITDVQPGAVYTPMWG 197

>pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 22/200 (11%)
Query: 48  KVVLITGASSGIGKHXX---XXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPA 104
           +V ++TGAS GIG+                               QA L G    L    
Sbjct: 29  QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVL---- 84
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV----VPMCLFEDYTDITKPAPAMDINFWG 160
           +V+        V+ T++ FG L+ LV NAG+    + M + +D  D       +D N   
Sbjct: 85  NVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWD-----AVIDTNLK- 138
Query: 161 SAYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           + +    A+  P +K   G+I+ + S  G    P    Y A+KA    +   L  E  G 
Sbjct: 139 AVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREI-GS 197
Query: 219 IGITI--VTPGLIESEITGG 236
            GIT+  V PG I++++T G
Sbjct: 198 RGITVNCVAPGFIDTDMTKG 217

>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa High-throughput Crystallographic Studies For Assessment Of Potential Targets In Early Stage Drug Discovery. Length = 242

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 81/206 (39%), Gaps = 43/206 (20%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           AG+ VL+TG SSGIG                              AEL     AL + AD
Sbjct: 10  AGQQVLVTGGSSGIGAAIAMQF-----------------------AELGAEVVALGLDAD 46
Query: 106 VSKVEDCKH------FVDVT--------MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA 151
              V   +H       +D+T         E   RLD LV NAG+      E+Y D+    
Sbjct: 47  --GVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISRD--REEY-DLATFE 101
Query: 152 PAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
             + +N   +   +  A P L Q  G I+ +AS            Y+ASK A + L  +L
Sbjct: 102 RVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSL 161
Query: 212 RVEFGGD-IGITIVTPGLIESEITGG 236
             E+  + I +  + PG I++ +  G
Sbjct: 162 ACEYAAERIRVNAIAPGWIDTPLGAG 187

>pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 6/178 (3%)
Query: 39  TINAEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPF 98
           ++N  D+AGKV ++TGA +GIG                             +        
Sbjct: 21  SMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCG 76
Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
           A A   DVS  +     VD  +  FG +D LV NAGVV +    D T +      + IN 
Sbjct: 77  AAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTT-VEDFDRVIAINL 135
Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
            G+   T  A P + ++  G I+ ++S AG +       Y  SKA  I L      E 
Sbjct: 136 RGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAEL 193

>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 12/194 (6%)
Query: 45  VAGKVVLITGASSGIG----KHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFAL 100
           +AGK   +TG S GIG    K                           +QA       A+
Sbjct: 29  LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA----GGRAV 84
Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
           AI AD    E  +  +  T+E  G LD LV +AG+      E+ T +        +NF  
Sbjct: 85  AIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETT-VADFDEVXAVNFRA 143
Query: 161 SAYGTYFAIPYLKQTKGKIIVVASA-AGWLPPPRMSFYNASKAAKIALYETLRVEFG-GD 218
                  A  +L    G+II + S  A  +P P +S Y+ASKAA   L + L  + G   
Sbjct: 144 PFVAIRSASRHLGD-GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRG 202
Query: 219 IGITIVTPGLIESE 232
           I + IV PG  +++
Sbjct: 203 ITVNIVHPGSTDTD 216

>pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 41  NAEDVAGKVVLITGASSGIGKHXXXXXXXXXXXX-XXXXXXXXXXXXXXDQAELMGSPFA 99
           NA    GK VLITGAS GIG                             ++ E  G   A
Sbjct: 23  NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAA 82
Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL-----FEDYTDITKPAPAM 154
           + I  D +   D    +   ++  G L +LV NAGVV   L      ED+  +      +
Sbjct: 83  V-IKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHV------I 135
Query: 155 DINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           D N   +  G   A+  + +++ G ++ VAS  G       + Y+ASK   IA+ ++   
Sbjct: 136 DNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAY 195
Query: 214 EFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE-IRDVQISLLPVQPTEECAKAI 271
           E    +I    VTPG IE++      +N N K E+  + ++++ ++ L     +E A+A+
Sbjct: 196 EGALRNIRFNSVTPGFIETD------MNANLKDELKADYVKNIPLNRLG--SAKEVAEAV 247

>pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 12/187 (6%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXX-XXXXXXXXXXXDQAELMGSPFALAIPAD 105
           GKV L+TG+  GIG                              + + +GS  A+AI AD
Sbjct: 18  GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSD-AIAIKAD 76
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           + +V +     D  + HFG LD  V+N+GVV     +D T+        D  F  +  G 
Sbjct: 77  IRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTE-----EEFDRVFSLNTRGQ 131
Query: 166 YFAI--PYLKQTKGKIIVVASA--AGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
           +F     Y   T+G  IV+ S+  +     P+ S ++ SK A  +       + G   I 
Sbjct: 132 FFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLFSGSKGAVDSFVRIFSKDCGDKKIT 191
Query: 221 ITIVTPG 227
           +  V PG
Sbjct: 192 VNAVAPG 198

>pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 89  DQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDIT 148
           D+   + S   L  PAD +K  +         + FG  D LV NAGV  +   ED+    
Sbjct: 68  DEVAGLSSGTVLHHPADXTKPSEIADXXAXVADRFGGADILVNNAGVQFVEKIEDF---- 123
Query: 149 KPAPAMD----INFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA 203
            P    D    +N   S +    AIP  K+   G+II +ASA G +  P  S Y A+K  
Sbjct: 124 -PVEQWDRIIAVNLSSSFHTIRGAIPPXKKKGWGRIINIASAHGLVASPFKSAYVAAKHG 182
Query: 204 KIALYETLRVEFGGDIGITI--VTPG-----LIESEI 233
              L +T+ +E   + G+T+  + PG     L+E +I
Sbjct: 183 IXGLTKTVALEV-AESGVTVNSICPGYVLTPLVEKQI 218

>pdb|3UVE|A Chain A, Crystal Structure Of Carveol Dehydrogenase ((+)-Trans-Carveol Dehydrogenase) From Mycobacterium Avium Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 72/195 (36%), Gaps = 29/195 (14%)
Query: 45  VAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPA 104
           V GKV  +TGA+ G G+                           D A    +P  LA  A
Sbjct: 9   VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68
Query: 105 DVSK------------VED---CKHFVDVTMEHFGRLDHLVTNAGV------VPMCLFED 143
           D+ K            V D    K  VD  +E  GRLD +V NAG+      +     ED
Sbjct: 69  DLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEED 128
Query: 144 YTDITKPAPAMDINFWGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASK 201
           +T++      +DIN  G        +P++      G II+ +S  G    P    Y A+K
Sbjct: 129 WTEM------IDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAK 182
Query: 202 AAKIALYETLRVEFG 216
              + L     VE G
Sbjct: 183 HGVVGLMRAFGVELG 197

>pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 8/191 (4%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV L+TGA  GIG+                             A       A  + A+V
Sbjct: 29  GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANV 88
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAYG 164
             VED     +  ++ FG+LD + +N+GVV    F    D+T         IN  G  + 
Sbjct: 89  GVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS---FGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
              A  +L +  G++I++ S  G     P+ + Y+ SK A       + ++     I + 
Sbjct: 146 AREAYKHL-EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVN 204
Query: 223 IVTPGLIESEI 233
           +V PG I++++
Sbjct: 205 VVAPGGIKTDM 215

>pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme From Clostridium Thermocellum Length = 247

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA-----GVVPMCLFEDYTDITKPA 151
           P       DV+     K FV+  ME   R+D LV NA     G++   L+E++  I    
Sbjct: 47  PNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYI---- 102
Query: 152 PAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
             + +        +      L + KG+II +AS   +   P    Y ++K   +AL   L
Sbjct: 103 --LSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHAL 160
Query: 212 RVEFGGDIGITIVTPGLI 229
            +  G D+ +  + PG I
Sbjct: 161 AMSLGPDVLVNCIAPGWI 178

>pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 8/191 (4%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV L+TGA  GIG+                             A       A  + A+V
Sbjct: 29  GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANV 88
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAYG 164
             VED     +  ++ FG+LD + +N+GVV    F    D+T         IN  G  + 
Sbjct: 89  GVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS---FGHVKDVTPEEFDRVFTINTRGQFFV 145
Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
              A  +L +  G++I++ S  G     P+ + Y+ SK A       + ++     I + 
Sbjct: 146 AREAYKHL-EIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVN 204
Query: 223 IVTPGLIESEI 233
           +V PG I++++
Sbjct: 205 VVAPGGIKTDM 215

>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 84/217 (38%), Gaps = 14/217 (6%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXX-XXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           KV ++TGAS GIG                              + E  G   AL   ADV
Sbjct: 28  KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGK-ALTAQADV 86
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           S     +       E FG +D LV NAG+ P+    +  D       + +N  G+ + T 
Sbjct: 87  SDPAAVRRLFATAEEAFGGVDVLVNNAGIXPLTTIAETGDAVFD-RVIAVNLKGT-FNTL 144
Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDIGITIVT 225
                  +  G+II  +++   L  P    Y A+KA   A    L  E  G DI +  V 
Sbjct: 145 REAAQRLRVGGRIINXSTSQVGLLHPSYGIYAAAKAGVEAXTHVLSKELRGRDITVNAVA 204
Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ 262
           PG   +++    FL   GK +   E+RD    L P++
Sbjct: 205 PGPTATDL----FL--EGKSD---EVRDRFAKLAPLE 232

>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 20/205 (9%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGS-PFALA 101
           +D AG+   +TG ++G+G                               E  GS P  + 
Sbjct: 4   KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-----VPMCLFEDYTDITKPAPAMDI 156
           +  DV+  E  K   D     FG +  L  NAGV     +    ++D+  +      + +
Sbjct: 64  VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWL------LGV 117
Query: 157 NFWGSAYGTYFAIPYL-------KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYE 209
           N  G   G    +P +       +Q  G ++  AS A +L       YN +K A   L E
Sbjct: 118 NLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSE 177
Query: 210 TLRVE-FGGDIGITIVTPGLIESEI 233
           +L       +IG++++ PGL++S I
Sbjct: 178 SLHYSLLKYEIGVSVLCPGLVKSYI 202

>pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
Query: 45  VAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPA 104
           +AG+  ++TGA SGIG+                           + A+  GS  A A+ A
Sbjct: 29  LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGS--AEAVVA 86
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF---WGS 161
           D++ +E   +  +  +    R+D LV NAG++     E+ + + +    + +N    W  
Sbjct: 87  DLADLEGAANVAE-ELAATRRVDVLVNNAGIIARAPAEEVS-LGRWREVLTVNLDAAW-- 142
Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
                F    L    G+I+ +AS   +     ++ Y ASK A + L   L  E+ G  +G
Sbjct: 143 VLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVG 202
Query: 221 ITIVTPGLI 229
           +  + PG +
Sbjct: 203 VNALAPGYV 211

>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 5/186 (2%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFA--LAIPAD 105
           +VVLITG  SG+G+                             A L  +P A  L   AD
Sbjct: 14  RVVLITGGGSGLGR-ATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVAD 72
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           VS     + +V  T E FGR+D    NAG+       +     +    + IN  G   G 
Sbjct: 73  VSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGL 132
Query: 166 YFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGITI 223
              +  ++ Q  G ++  AS  G       S Y A+K   + L     VE+G   I I  
Sbjct: 133 EKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINA 192
Query: 224 VTPGLI 229
           + PG I
Sbjct: 193 IAPGAI 198

>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG-VVPMCLFEDYTD--ITKPAPAMDIN 157
           ++ ADV+  +     ++ T++ FG++D LV NAG  +P       TD  I      + +N
Sbjct: 62  SVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLN 121
Query: 158 FWGSAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVE-- 214
                  T    P+L  +KG+I+ V+S  AG    P   +Y  +KAA      +  ++  
Sbjct: 122 LQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLA 181
Query: 215 -FGGDIGITIVTPGLIESEIT 234
            FG  I +  V+PG++E+  T
Sbjct: 182 KFG--IRVNSVSPGMVETGFT 200

>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-----MCLFEDYTDITKPAPAMDINF 158
           AD + V D    ++  ++ FGR+D LV NAG++          +D+  +       D++ 
Sbjct: 81  ADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVN------DVHL 134
Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            GS   T  A PY+ KQ  G+II+ +S +G         Y A+K   I L  T+ +E
Sbjct: 135 KGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIE 191

>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 5/175 (2%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           + V G++VLITGA  GIG+                            + + +G+     +
Sbjct: 27  KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV 86
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC-LFEDYTDITKPAPAMDINFWGS 161
             D S  ED            G +  LV NAGVV    LF   T   +     ++N    
Sbjct: 87  -VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFA--TQDPQIEKTFEVNVLAH 143
Query: 162 AYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
            + T   +P + K   G I+ VASAAG +  P +  Y +SK A +  ++TL  E 
Sbjct: 144 FWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDEL 198

>pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene Reductase In Complex With Nadph And Pyroquilon Length = 274

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
            +AI AD+SK  +     D  + HFG LD +++N+G+   C   D  ++T+     D  F
Sbjct: 73  GVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWC---DELEVTQ--ELFDKVF 127
Query: 159 WGSAYGTYF-AIPYLKQTK--GKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVE 214
             +  G +F A   LK  +  G+II+ +S A  +   P  + Y  SKAA         V+
Sbjct: 128 NLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVD 187
Query: 215 FGGDIGITI--VTPGLIESEI 233
            G   G+T+  + PG +++++
Sbjct: 188 CGAK-GVTVNCIAPGGVKTDM 207

>pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 11/212 (5%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP 103
            +AG++ L+TG S GIG+                            +    G     AIP
Sbjct: 26  SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGD--CQAIP 83
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           AD+S     +       E   RLD LV NAG       E Y  ++     M +N      
Sbjct: 84  ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYP-VSGWEKVMQLNVTSVFS 142
Query: 164 GTYFAIPYLKQTK-----GKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGG 217
                +P L+++       ++I + S AG       ++ Y  SKAA   L   L  E  G
Sbjct: 143 CIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVG 202
Query: 218 D-IGITIVTPGLIESEITGGKFLNKNGKLEVD 248
           + I + ++ PG   S +T     N    LE D
Sbjct: 203 EHINVNVIAPGRFPSRMT-RHIANDPQALEAD 233

>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 98/247 (39%), Gaps = 16/247 (6%)
Query: 42  AEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +E + GK VLITG  SGIG+                            Q         + 
Sbjct: 42  SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVL 101
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYTDITKPAPAMDINFWG 160
           +P D+S  + CK  V  T+   G L+ LV N A   P    E Y    +      IN + 
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLE-YITAEQLEKTFRINIFS 160
Query: 161 SAYGTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLR---VEFG 216
             + T  A+ +LKQ  G +I+  AS   +     +  Y+A+K A +A   +L    V+ G
Sbjct: 161 YFHVTKAALSHLKQ--GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKG 218
Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC 276
             I +  V PG I + +    F  K    +V Q   +V +   P QP  E A A V  A 
Sbjct: 219 --IRVNGVAPGPIWTPLIPSSFDEK----KVSQFGSNVPMQ-RPGQPY-ELAPAYVYLAS 270
Query: 277 RGDRYLT 283
               Y+T
Sbjct: 271 SDSSYVT 277

>pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 19/202 (9%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFAL--AIP 103
           +GK V+ITG+S+GIG+                            Q    G P     A+ 
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP----APAMDINFW 159
           ADV++       ++ T+  FG++D LV NAG     L +   +  +P         +NF 
Sbjct: 85  ADVTEASGQDDIINTTLAKFGKIDILVNNAGA---NLADGTANTDQPVELYQKTFKLNFQ 141
Query: 160 GSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR------V 213
                T     +L +TKG+I+ V+S      P   S Y     AK AL +  R      +
Sbjct: 142 AVIEMTQKTKEHLIKTKGEIVNVSSIVAG--PQAHSGYPYYACAKAALDQYTRCTAIDLI 199
Query: 214 EFGGDIGITIVTPGLIESEITG 235
           + G  + +  V+PG + +   G
Sbjct: 200 QHG--VRVNSVSPGAVATGFMG 219

>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 77/193 (39%), Gaps = 10/193 (5%)
Query: 42  AEDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALA 101
           +E + GK VLITG  SGIG+                            Q         + 
Sbjct: 42  SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVL 101
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTN-AGVVPMCLFEDYTDITKPAPAMDINFWG 160
           +P D+S  + CK  V  T+   G L+ LV N A   P    E Y    +      IN + 
Sbjct: 102 LPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLE-YITAEQLEKTFRINIFS 160
Query: 161 SAYGTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLR---VEFG 216
             + T  A+ +LKQ  G +I+  AS   +     +  Y+A+K A +A   +L    V+ G
Sbjct: 161 YFHVTKAALSHLKQ--GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKG 218
Query: 217 GDIGITIVTPGLI 229
             I +  V PG I
Sbjct: 219 --IRVNGVAPGPI 229

>pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida Parapsilosis With Anti-Prelog Stereo-Specificity Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 25/202 (12%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFAL---AIP 103
           GKV  +TG+S GIG                            ++AE +   + +   A  
Sbjct: 34  GKVASVTGSSGGIG----WAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYK 89
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV----PMCLFEDYTDITKPAPAMDINFW 159
            ++S  +  +  +    + FG +D  V NAGV     P    ++Y    K   ++D+N  
Sbjct: 90  CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKII-SVDLN-- 146
Query: 160 GSAYGTYFAIP-----YLKQTKGKIIVVASAAGWLP--PPRMSFYNASKAAKIALYETLR 212
               G Y+        + K  KG +I+ +S +G +   P   + YN +KAA   L ++L 
Sbjct: 147 ----GVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLA 202
Query: 213 VEFGGDIGITIVTPGLIESEIT 234
           +E+     +  ++PG I+++IT
Sbjct: 203 IEWAPFARVNTISPGYIDTDIT 224

>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWG--- 160
           DV+  E  ++ V    E  GR+D LV  AG+ +     ED TD  +    +DIN  G   
Sbjct: 70  DVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTD-GQWLKQVDINLNGMFR 128
Query: 161 --SAYGTYFAIPYLKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVEFG 216
              A G       L+Q +G I+ + S +G +   P + + YNASKA       +L  E+ 
Sbjct: 129 SCQAVGRIM----LEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWA 184
Query: 217 -GDIGITIVTPGLIESEIT 234
              I    V P  IE+ +T
Sbjct: 185 PHGIRANAVAPTYIETTLT 203

>pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 10/184 (5%)
Query: 91  AELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP 150
            EL      L +  DV         VD   E F  L  L+ NAG+          D+   
Sbjct: 63  GELSAKTRVLPLTLDVRDRAAXSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDW 122
Query: 151 APAMDINFWGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
              +D N  G  Y T   +P L        I+ + S AG  P P    Y  +KA      
Sbjct: 123 DTXVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFS 182
Query: 209 ETLRVEFGG-DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEEC 267
             LR +  G  + +T + PGL ESE +  +F     + +             P+QP E+ 
Sbjct: 183 LNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYD------KTYAGAHPIQP-EDI 235
Query: 268 AKAI 271
           A+ I
Sbjct: 236 AETI 239

>pdb|2FWM|X Chain X, Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodihydroxy Benzoate Dehydrogenase Length = 250

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 20/195 (10%)
Query: 44  DVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGS-PFALAI 102
           D +GK V +TGA  GIG                            DQA      PFA  +
Sbjct: 4   DFSGKNVWVTGAGKGIG-----------YATALAFVEAGAKVTGFDQAFTQEQYPFATEV 52
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGS 161
             DV+            +    RLD LV  AG++ M   +  + +  +   A+++   G 
Sbjct: 53  -MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNV---GG 108
Query: 162 AYGTYFAI--PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
           A+  +      + +Q  G I+ VAS A   P   MS Y ASKAA  +L  ++ +E  G  
Sbjct: 109 AFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSG 168
Query: 219 IGITIVTPGLIESEI 233
           +   +V+PG  ++++
Sbjct: 169 VRCNVVSPGSTDTDM 183

>pdb|3U0B|A Chain A, Crystal Structure Of An Oxidoreductase From Mycobacterium Smegmatis Length = 454

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                               ++ G+   L + AD 
Sbjct: 213 GKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADD 272
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +   H   VT  H G++D LV NAG+    L  +          MD   W +     
Sbjct: 273 AVDKITAH---VTEHHGGKVDILVNNAGITRDKLLAN----------MDEKRWDAVIAVN 319
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P  + T+           G++I ++S AG       + Y  +KA  I L E L    
Sbjct: 320 LLAPQ-RLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALAPVL 378
Query: 216 GGDIGITI--VTPGLIESEIT 234
             D GITI  V PG IE+++T
Sbjct: 379 -ADKGITINAVAPGFIETKMT 398

>pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid Dehydrogenase Type 4 In Complex With Nad Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
           A+   VE+ +  V   ++ FGR+D +V NAG++    F     ED+  I +      ++ 
Sbjct: 92  ANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHR------VHL 145
Query: 159 WGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            GS   T  A  ++K+ K G+II+ +SA+G       + Y+A+K   + L  +L +E
Sbjct: 146 RGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIE 202

>pdb|3VTZ|A Chain A, Structure Of Thermoplasma Volcanium Aldohexose Dehydrogenase Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 24/217 (11%)
Query: 43  EDVAGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI 102
           E+   KV ++TG SSGIG                            D  ++         
Sbjct: 10  EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI--------- 60
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV---VPMCLFEDYTDITKPAPAMDINFW 159
             DV+  E+ K  V+ T + +GR+D LV NAG+    P+ L    T+I +    +D+N  
Sbjct: 61  --DVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTP--TEIWR--RIIDVNVN 114
Query: 160 GSAYGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           GS     + IP  L    G II +AS   +      + Y  SK A + L  ++ +++   
Sbjct: 115 GSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAPK 174
Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ 255
           I    V PG I + +     + K  K+EV ++   V+
Sbjct: 175 IRCNAVCPGTIMTPM-----VIKAAKMEVGEDENAVE 206

>pdb|4DA9|A Chain A, Crystal Structure Of Putative Short-Chain DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 13/166 (7%)
Query: 91  AELMG-SPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITK 149
           AEL G     + + AD++ +   +  VD  +  FGR+D LV NAG+  + + +D+ D+ K
Sbjct: 72  AELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASI-VRDDFLDL-K 129
Query: 150 PA---PAMDINFWGSAYGTYFAIPYLKQTKGK----IIVVASAAGWLPPPRMSFYNASKA 202
           P      + +N  G+ + T   +     +  +    II + S +     P    Y  SKA
Sbjct: 130 PENFDTIVGVNLRGTVFFTQAVLKAXLASDARASRSIINITSVSAVXTSPERLDYCXSKA 189
Query: 203 AKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLE 246
              A  + L +    + GI +  V PG+I S+ T       +G +E
Sbjct: 190 GLAAFSQGLALRL-AETGIAVFEVRPGIIRSDXTAAVSGKYDGLIE 234

>pdb|4DYV|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SDR FROM Xanthobacter Autotrophicus Py2 Length = 272

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 9/171 (5%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           K+ ++TGA SG+G+                           + A  +G   AL +P DV+
Sbjct: 29  KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQ---ETAAEIGDD-ALCVPTDVT 84
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
             +  +     T+E FGR+D L  NAG   P    ED T   +    +D N  G    T 
Sbjct: 85  DPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPXEDLT-FAQWKQVVDTNLTGPFLCTQ 143
Query: 167 FAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            A    K  +   G+II   S +   P P  + Y A+K A   L ++  ++
Sbjct: 144 EAFRVXKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLD 194

>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 16/193 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GK  LITG++ GIG+                             AE+   P A AI  DV
Sbjct: 5   GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA--AEI--GPAACAIALDV 60
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +        V   ++ +G +D LV NA +  +       +IT+ +   D  F  +  GT 
Sbjct: 61  TDQASIDRCVAELLDRWGSIDILVNNAALFDLAPI---VEITRES--YDRLFAINVSGTL 115
Query: 167 FAIPYLKQT------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-GGDI 219
           F +  + +        GKII +AS AG      +  Y A+KAA I+L ++  +      I
Sbjct: 116 FMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGI 175
Query: 220 GITIVTPGLIESE 232
            +  + PG+++ E
Sbjct: 176 NVNAIAPGVVDGE 188

>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG--VVPMCLFEDYTDITKPAPAMDINFW 159
           + ADV+K ED    V+  M HFG++D L+ NAG  V       DY +  +    +  N  
Sbjct: 62  VQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEE-DEWNEMIQGNLT 120
Query: 160 GSAYGTYFAIPYL-KQTKGKIIVVA-----SAAGWLPPPRMSFYNASKAAKIALYETLRV 213
              +     +P + KQ  G+II        SA GW+     S + A+K   ++L +T+  
Sbjct: 121 AVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYR---SAFAAAKVGLVSLTKTVAY 177
Query: 214 EFGGDIGIT--IVTPGLIESEI 233
           E   + GIT  +V PG I  E+
Sbjct: 178 E-EAEYGITANMVCPGDIIGEM 198

>pdb|3UWR|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Strain 104 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV---------VPMCLFEDYTDITKPAPAMD 155
           DV   E  K  VD  +E  GRLD +V NAGV         +   +++D          +D
Sbjct: 84  DVRDFEALKSAVDSGVEQLGRLDIIVANAGVGTDGRKLHKIRDNVWQDM---------ID 134
Query: 156 INFWGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
           IN  G  +     +P++      G I++ +S  G    P    Y A+K   I L     V
Sbjct: 135 INLTGVWHTVKAGVPHVLSGGRGGSIVLTSSVGGRKAYPNTGHYIAAKHGVIGLMRAFAV 194
Query: 214 EFG 216
           E G
Sbjct: 195 ELG 197

>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 81/197 (41%), Gaps = 16/197 (8%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIP--AD 105
           ++ L+TGAS GIG                             + +  G P  L IP   D
Sbjct: 33  RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTL-IPYRCD 91
Query: 106 VSKVED-CKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAY 163
           +S  ED    F  +  +H G +D  + NAG+  P  L    T   K     ++N    + 
Sbjct: 92  LSNEEDILSMFSAIRSQHSG-VDICINNAGLARPDTLLSGSTSGWK--DMFNVNVLALSI 148
Query: 164 GTYFAIPYLKQTK---GKIIVVASAAGW--LPPPRMSFYNASKAAKIALYETLRVEF--- 215
            T  A   +K+     G II + S +G   LP     FY+A+K A  AL E LR E    
Sbjct: 149 CTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREA 208
Query: 216 GGDIGITIVTPGLIESE 232
              I  T ++PG++E++
Sbjct: 209 QTHIRATCISPGVVETQ 225

>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV +ITG + GIG                              A+ +G+P  +      
Sbjct: 6   GKVAIITGGTLGIG---LAIATKFVEEGAKVMITDRHSDVGEKAAKSVGTPDQIQFFQHD 62
Query: 107 SKVEDC-KHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           S  ED      D T + FG +  LV NAG+      E+ T   +    + +N  G  +GT
Sbjct: 63  SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETT-TAEWRKLLAVNLDGVFFGT 121
Query: 166 YFAIPYLKQTKG---KIIVVASAAGWLPPPRMSFYNASKAA-----KIALYETLRVEFGG 217
              I  +K  KG    II ++S  G++  P +  YNASK A     K A  +    ++  
Sbjct: 122 RLGIQRMKN-KGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDY-- 178
Query: 218 DIGITIVTPGLIES 231
           D+ +  V PG I++
Sbjct: 179 DVRVNTVHPGYIKT 192

>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAI-PAD 105
           GKV +ITG + GIG                              A+ +G+P  +     D
Sbjct: 6   GKVAIITGGTLGIG---LAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHD 62
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
            S  +      D T + FG +  LV NAG+      E+ T   +    + +N  G  +GT
Sbjct: 63  SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETT-TAEWRKLLAVNLDGVFFGT 121
Query: 166 YFAIPYLKQTKG---KIIVVASAAGWLPPPRMSFYNASKAA-----KIALYETLRVEFGG 217
              I  +K  KG    II ++S  G++  P +  YNASK A     K A  +    ++  
Sbjct: 122 RLGIQRMKN-KGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDY-- 178
Query: 218 DIGITIVTPGLIES 231
           D+ +  V PG I++
Sbjct: 179 DVRVNTVHPGYIKT 192

>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +D+N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLDVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

>pdb|3T7C|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Avium Bound To Nad Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 90  QAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITK 149
           Q E +G    +A   DV   +  +  VD  +   GRLD ++ NA +       +  D   
Sbjct: 83  QVEALGRRI-IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKT 141
Query: 150 PAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIAL 207
               +D+N  G+      AIP++   K  G I+  +S  G      +  Y ASK     L
Sbjct: 142 WRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGL 201
Query: 208 YETLRVEFG-GDIGITIVTP 226
             T+ +E G  +I + IV P
Sbjct: 202 MRTMALELGPRNIRVNIVCP 221

>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +D+N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLDVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

>pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2 Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
           A+   VE  +  V   ++ FGR+D +V NAG++    F     ED+  I +      ++ 
Sbjct: 71  ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQR------VHL 124
Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
            GS   T  A  +  KQ  G+II  ASA+G       + Y+A+K   + L  TL +E
Sbjct: 125 RGSFQVTRAAWDHXKKQNYGRIIXTASASGIYGNFGQANYSAAKLGLLGLANTLVIE 181

>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +D+N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLDVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +D+N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLDVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                              +++ G+   L + AD 
Sbjct: 213 GKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADD 272
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  +H  D    H G+ D LV NAG+    L  +          MD   W +     
Sbjct: 273 AVDKISEHLRD---HHGGKADILVNNAGITRDKLLAN----------MDDARWDAVLAVN 319
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P L+ T+           G++I ++S AG       + Y  +KA  I + + L    
Sbjct: 320 LLAP-LRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGL 378
Query: 216 GGDIGITI--VTPGLIESEIT 234
               GITI  V PG IE+++T
Sbjct: 379 AAK-GITINAVAPGFIETQMT 398

>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom Resolution Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                              +++ G+   L + AD 
Sbjct: 221 GKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADD 280
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  +H  D    H G+ D LV NAG+    L  +          MD   W +     
Sbjct: 281 AVDKISEHLRD---HHGGKADILVNNAGITRDKLLAN----------MDDARWDAVLAVN 327
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P L+ T+           G++I ++S AG       + Y  +KA  I + + L    
Sbjct: 328 LLAP-LRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGL 386
Query: 216 GGDIGITI--VTPGLIESEIT 234
               GITI  V PG IE+++T
Sbjct: 387 AAK-GITINAVAPGFIETQMT 406

>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +D+N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLDVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 2.5 Angstrom Resolution Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                              +++ G+   L + AD 
Sbjct: 197 GKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADD 256
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  +H  D    H G+ D LV NAG+    L  +          MD   W +     
Sbjct: 257 AVDKISEHLRD---HHGGKADILVNNAGITRDKLLAN----------MDDARWDAVLAVN 303
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P L+ T+           G++I ++S AG       + Y  +KA  I + + L    
Sbjct: 304 LLAP-LRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGL 362
Query: 216 GGDIGITI--VTPGLIESEIT 234
               GITI  V PG IE+++T
Sbjct: 363 AAK-GITINAVAPGFIETQMT 382

>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex Length = 446

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                              +++ G+   L + AD 
Sbjct: 205 GKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADD 264
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  +H  D    H G+ D LV NAG+    L  +          MD   W +     
Sbjct: 265 AVDKISEHLRD---HHGGKADILVNNAGITRDKLLAN----------MDDARWDAVLAVN 311
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P L+ T+           G++I ++S AG       + Y  +KA  I + + L    
Sbjct: 312 LLAP-LRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGL 370
Query: 216 GGDIGITI--VTPGLIESEIT 234
               GITI  V PG IE+++T
Sbjct: 371 AAK-GITINAVAPGFIETQMT 390

>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Tuberculosis Length = 475

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADV 106
           GKV ++TGA+ GIG                              +++ G+   L + AD 
Sbjct: 234 GKVAIVTGAARGIGATIAEVFARDGAHVVAIDVESAAENLAETASKVGGTALWLDVTADD 293
Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           +  +  +H  D    H G+ D LV NAG+    L  +          MD   W +     
Sbjct: 294 AVDKISEHLRD---HHGGKADILVNNAGITRDKLLAN----------MDDARWDAVLAVN 340
Query: 167 FAIPYLKQTK-----------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
              P L+ T+           G++I ++S AG       + Y  +KA  I + + L    
Sbjct: 341 LLAP-LRLTEGLVGNGSIGEGGRVIGLSSIAGIAGNRGQTNYATTKAGMIGITQALAPGL 399
Query: 216 GGDIGITI--VTPGLIESEIT 234
               GITI  V PG IE+++T
Sbjct: 400 AAK-GITINAVAPGFIETQMT 419

>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD----INF 158
           PAD+S V   +    +    FG +D LV NAG+  +   E +     P  + D    +N 
Sbjct: 57  PADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQF-----PLESWDKIIALNL 111
Query: 159 WGSAYGTYFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
               +GT  A+P ++ +  G+II +AS  G +     + Y A+K   + L + + +E   
Sbjct: 112 SAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETAT 171
Query: 217 GDIGITIVTPGLI 229
            ++    + PG +
Sbjct: 172 SNVTCNAICPGWV 184

>pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8 Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 18/193 (9%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           AGK VL+TG + GIG+                           + AE +G  F      D
Sbjct: 5   AGKGVLVTGGARGIGR----AIAQAFAREGALVALCDLRPEGKEVAEAIGGAF---FQVD 57
Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP----AMDINFWGS 161
           +    +   FV+      GR+D LV NA +         + +T   P     +++N    
Sbjct: 58  LEDERERVRFVEEAAYALGRVDVLVNNAAIAA-----PGSALTVRLPEWRRVLEVNLTAP 112
Query: 162 AYGTYFAIPYLKQTKGKIIV-VASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DI 219
            + +  A   +++  G  IV VAS  G       + YNASK   + L  +L ++     I
Sbjct: 113 MHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRI 172
Query: 220 GITIVTPGLIESE 232
            +  V PG I +E
Sbjct: 173 RVNAVAPGAIATE 185

>pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 95  GSPFAL-AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA 153
           G+P  L  +  DV+  +          EH G ++ LV+NAG+         T+  K    
Sbjct: 70  GAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE-EKFEKV 128
Query: 154 MDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           ++ N  G+      A   +++ K G++I +AS +G       + Y ASKA  I +  ++ 
Sbjct: 129 INANLTGAFRVAQRASRSMQRNKFGRMIFIASVSGLWGIGNQANYAASKAGVIGMARSIA 188
Query: 213 VEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ 262
            E    ++   +V PG I++++T            +D+ I+   +  +P +
Sbjct: 189 RELSKANVTANVVAPGYIDTDMT----------RALDERIQQGALQFIPAK 229

>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 16/196 (8%)
Query: 47  GKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXD--QAELMGSPFALAIP- 103
           G+V ++TG ++GIGK                           D  QA L  +  A  IP 
Sbjct: 18  GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI 77
Query: 104 -ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
             ++   E+  + V  T++ FG+++ LV N G   +   E  +     A  ++ N  G+ 
Sbjct: 78  QCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHA-VLETNLTGTF 136
Query: 163 Y---GTYFAIPYLKQTKGKI--IVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG- 216
           Y     Y +  ++K+  G I  I+V + AG+   P      A++A    L ++L +E+  
Sbjct: 137 YMCKAVYSS--WMKEHGGSIVNIIVPTKAGF---PLAVHSGAARAGVYNLTKSLALEWAC 191
Query: 217 GDIGITIVTPGLIESE 232
             I I  V PG+I S+
Sbjct: 192 SGIRINCVAPGVIYSQ 207

>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 260

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           KVV+ITGAS GIG                               +    P    +  D+S
Sbjct: 29  KVVVITGASQGIG----------AGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDIS 78
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGSA 162
           K E     V   +E FGR+D LV NAGV     F     EDY         + +N  G  
Sbjct: 79  KPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEXTQEDYDH------NLGVNVAGFF 132
Query: 163 YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRMSFYNA----SKAAKIALYETLRVEFG- 216
           + T  A    LKQ  G I+ + ++   +  P +   +A    +K    A+  +L  EF  
Sbjct: 133 HITQRAAAEXLKQGSGHIVSITTS--LVDQPXVGXPSALASLTKGGLNAVTRSLAXEFSR 190
Query: 217 GDIGITIVTPGLIES 231
             + +  V+PG+I++
Sbjct: 191 SGVRVNAVSPGVIKT 205

>pdb|1ULS|A Chain A, Crystal Structure Of Tt0140 From Thermus Thermophilus Hb8 Length = 245

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 48  KVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPADVS 107
           K VLITGA+ GIG+                           + AE +G+   +   AD +
Sbjct: 6   KAVLITGAAHGIGR---ATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVXDVADPA 62
Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL-----FEDYTDITKPAPAMDINFWGSA 162
            VE  + F +  + H GRLD +V  AG+           ED+  +      + +N  GS 
Sbjct: 63  SVE--RGFAE-ALAHLGRLDGVVHYAGITRDNFHWKXPLEDWELV------LRVNLTGSF 113
Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGI 221
                A    ++     IV+ ++  +L     + Y AS A  + L  TL +E G   I +
Sbjct: 114 LVAKAASEAXREKNPGSIVLTASRVYLGNLGQANYAASXAGVVGLTRTLALELGRWGIRV 173
Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV 261
             + PG IE+  T           +V +++R+  I+  P+
Sbjct: 174 NTLAPGFIETRXTA----------KVPEKVREKAIAATPL 203

>pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDI 156
           P   A+ +D++ + +         +  G +D L  NAGV  +  F+  ++      + D 
Sbjct: 54  PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSE-----ASYDR 108
Query: 157 NFWGSAYGTYFAIPYLK---QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            F  +  G +F +  L    +  G I+  +S A     P  S Y+ASKAA ++    L  
Sbjct: 109 QFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGXSVYSASKAALVSFASVLAA 168
Query: 214 E-FGGDIGITIVTPGLIESEITG 235
           E     I +  V+PG I++   G
Sbjct: 169 ELLPRGIRVNSVSPGFIDTPTKG 191

>pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDI 156
           P   A+ +D++ + +         +  G +D L  NAGV  +  F+  ++      + D 
Sbjct: 53  PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSE-----ASYDR 107
Query: 157 NFWGSAYGTYFAIPYLK---QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            F  +  G +F +  L    +  G I+  +S A     P  S Y+ASKAA ++    L  
Sbjct: 108 QFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGXSVYSASKAALVSFASVLAA 167
Query: 214 E-FGGDIGITIVTPGLIESEITG 235
           E     I +  V+PG I++   G
Sbjct: 168 ELLPRGIRVNSVSPGFIDTPTKG 190

>pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 95  GSPFAL-AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA 153
           G+P  L  +  DV+  +          EH G ++ LV+NAG+         T+  K    
Sbjct: 50  GAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE-EKFEKV 108
Query: 154 MDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           ++ N  G+      A   +++ K G++I + S +G       + Y ASKA  I +  ++ 
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIA 168
Query: 213 VEFG-GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ 262
            E    ++   +V PG I++++T            +D+ I+   +  +P +
Sbjct: 169 RELSKANVTANVVAPGYIDTDMT----------RALDERIQQGALQFIPAK 209

>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 46  AGKVVLITGASSGIGKHXXXXXXXXXXXXXXXXXXXXXXXXXXDQAELMGSPFALAIPAD 105
           A  VVLITG SSGIG H                           Q  L  +  ALA P  
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT---QGRLWEAARALACPPG 57
Query: 106 VSK-----VEDCKHFVDVTMEHF--GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
             +     V D K  V    E    GR+D LV NAG+  +   E   +    A  +++N 
Sbjct: 58  SLETLQLDVRDSKS-VAAARERVTEGRVDVLVCNAGLGLLGPLEALGE-DAVASVLEVNV 115
Query: 159 WGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G+       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V
Sbjct: 116 VGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAV 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	2e-91
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	5e-60
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	2e-57
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	6e-56
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	9e-55
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	7e-53
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	4e-50
1xkq_A	280	Short-chain reductase family member (5D234); parra	2e-49
1spx_A	278	Short-chain reductase family member (5L265); paral	4e-49
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	4e-49
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	4e-48
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	8e-48
1xhl_A	297	Short-chain dehydrogenase/reductase family member	2e-47
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	2e-47
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	5e-47
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	1e-46
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	2e-46
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	3e-46
3imf_A	257	Short chain dehydrogenase; structural genomics, in	6e-46
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	7e-46
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	8e-46
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	1e-45
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	2e-45
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	2e-45
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	4e-45
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	6e-45
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	6e-45
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	7e-45
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	9e-45
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	2e-44
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	2e-44
4dqx_A	277	Probable oxidoreductase protein; structural genomi	3e-44
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	4e-44
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	7e-44
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	8e-44
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	8e-44
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	1e-43
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	2e-43
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	3e-43
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	4e-43
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	4e-43
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	1e-42
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	2e-42
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	2e-42
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	2e-42
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	3e-42
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	8e-42
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	9e-42
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	9e-42
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	9e-42
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	1e-41
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	1e-41
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	2e-41
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	2e-41
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	3e-41
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	4e-41
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	5e-41
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	1e-40
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	2e-40
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	2e-40
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	5e-40
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	5e-40
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	6e-40
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	7e-40
4e4y_A	244	Short chain dehydrogenase family protein; structur	7e-40
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	1e-39
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	2e-39
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	3e-39
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	3e-39
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	3e-39
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	4e-39
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	4e-39
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	4e-39
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	5e-39
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	8e-39
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	1e-38
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	1e-38
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	1e-38
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	2e-38
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	2e-38
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	3e-38
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	3e-38
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	4e-38
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	8e-38
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	1e-37
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	1e-37
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	2e-37
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	3e-37
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	3e-37
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	1e-36
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	1e-36
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	1e-36
1xq1_A	266	Putative tropinone reducatse; structural genomics,	2e-36
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	2e-36
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	4e-36
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	5e-36
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	8e-36
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	1e-35
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	1e-35
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	2e-35
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	2e-35
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	2e-35
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	3e-35
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	3e-35
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	4e-35
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	5e-35
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	5e-35
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	6e-35
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	7e-35
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	7e-35
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	1e-34
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-34
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	2e-34
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	2e-34
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	3e-34
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	4e-34
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	5e-34
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	6e-34
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	8e-34
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	9e-34
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	2e-33
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	3e-33
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	4e-33
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	5e-33
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	5e-33
3rih_A	293	Short chain dehydrogenase or reductase; structural	7e-33
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	9e-33
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	1e-32
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	1e-32
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	1e-32
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	1e-32
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	4e-32
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	5e-32
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	7e-32
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	9e-32
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	2e-31
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	2e-31
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	5e-31
3cxt_A	291	Dehydrogenase with different specificities; rossma	6e-31
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	9e-31
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	1e-30
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	3e-30
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	3e-30
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	4e-30
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	6e-30
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	7e-30
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	2e-29
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	3e-29
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	4e-29
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	1e-28
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	3e-28
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	4e-28
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	7e-28
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	8e-28
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	1e-27
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	2e-27
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	2e-27
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	2e-27
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	5e-27
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	5e-27
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	6e-27
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	8e-27
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	8e-27
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	2e-26
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	1e-25
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	6e-25
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	8e-25
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	1e-24
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	1e-24
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	2e-24
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	3e-24
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	3e-24
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	3e-24
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	6e-24
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	3e-23
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	6e-23
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	1e-22
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	2e-18
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	4e-21
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	6e-21
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	7e-21
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	3e-20
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	2e-19
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	5e-19
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	5e-16
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	1e-15
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	2e-12
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	3e-08
4alk_A	282	ENR, enoyl-[acyl-carrier-protein] reductase [NADPH	7e-08
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	2e-07
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	2e-06
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	2e-06
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	3e-06
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	1e-05
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	1e-05
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	2e-05
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	6e-05
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	2e-04

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score =  271 bits (696), Expect = 2e-91
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 19/253 (7%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
                E + GK V++TGAS GIG+ +AY  A+  A +V+ AR +  L++V      +G+ 
Sbjct: 19  EEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAA 78

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
            A  I   +  +   + FV    +  G LD L+ N             DI     +M++N
Sbjct: 79  SAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFH-DDIHHVRKSMEVN 137

Query: 158 FWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF-- 215
           F      T  A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+  
Sbjct: 138 FLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSV 197

Query: 216 -GGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS 274
              ++ IT+   GLI++E    K ++                  +   P EECA  I+  
Sbjct: 198 SRVNVSITLCVLGLIDTETA-MKAVSGIVH--------------MQAAPKEECALEIIKG 242

Query: 275 ACRGDRYLTQPSW 287
                  +   S 
Sbjct: 243 GALRQEEVYYDSS 255

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score =  190 bits (486), Expect = 5e-60
 Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 28/251 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            V G++VLITGA  GIG+  AYE+A+ +++LVL    +  L E A + + +G+       
Sbjct: 28  SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK-VHTFV 86

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGS 161
            D S  ED            G +  LV NAGVV            I K     ++N    
Sbjct: 87  VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEK---TFEVNVLAH 143

Query: 162 AYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG--- 217
            + T   +P + K   G I+ VASAAG +  P +  Y +SK A +  ++TL  E      
Sbjct: 144 FWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQI 203

Query: 218 -DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC 276
             +  T + P  + +                   I++   SL P    EE    +++   
Sbjct: 204 TGVKTTCLCPNFVNTGF-----------------IKNPSTSLGPTLEPEEVVNRLMHGIL 246

Query: 277 RGDRYLTQPSW 287
              + +  PS 
Sbjct: 247 TEQKMIFIPSS 257

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score =  186 bits (473), Expect = 2e-57
 Identities = 53/263 (20%), Positives = 100/263 (38%), Gaps = 22/263 (8%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALA 101
           +D AG+   +TG ++G+G  L  +   +  ++ +   R+  + +     E  GS    + 
Sbjct: 4   KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFW 159
           +  DV+  E  K   D     FG +  L  NAGV      E+ +  D       + +N  
Sbjct: 64  VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDW---LLGVNLH 120

Query: 160 GSAYGTYFAIPYLK-------QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           G   G    +P +        Q  G ++  AS A +L       YN +K A   L E+L 
Sbjct: 121 GVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLH 180

Query: 213 VEFGGD-IGITIVTPGLIESEIT------GGKFLNKNGKLEVDQEIRDVQISLLPVQPTE 265
                  IG++++ PGL++S I             +   ++     R   +    ++P +
Sbjct: 181 YSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEP-D 239

Query: 266 ECAKAIVNSACRGDRY-LTQPSW 287
                ++ +      +  + P  
Sbjct: 240 VIGARVIEAMKANRLHIFSHPDH 262

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score =  179 bits (456), Expect = 6e-56
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 10/194 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           +   +++TGA SG+G+ L      R  ++ ++ RR ++L++      L  +   + I AD
Sbjct: 2   SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE--LLLGNA--VIGIVAD 57

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAY 163
           ++  ED        +E  G  + ++  AG         YT   I +    M+ N   +  
Sbjct: 58  LAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRR---VMESNLVSTIL 114

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
                +  + +  G +  V S+A  +     S Y ASK       E+LR E     + + 
Sbjct: 115 VAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLV 174

Query: 223 IVTPGLIESEITGG 236
            + P  I SE    
Sbjct: 175 NLYPSGIRSEFWDN 188

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score =  178 bits (454), Expect = 9e-55
 Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 13/254 (5%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
               G+  ++TG +SGIG   A E+ARR ARLVL    +  L +  +     G   A  +
Sbjct: 27  SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFD-AHGV 85

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWG 160
             DV  +++     D      G +D + +NAG+V           D       +DI+ WG
Sbjct: 86  VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRW---VIDIDLWG 142

Query: 161 SAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           S +     +P L +  T G I   AS AG +P   +  Y  +K   + L ETL  E   +
Sbjct: 143 SIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPN 202

Query: 219 -IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNS 274
            IG++++ P ++E+++       +     +          L         ++ A+   ++
Sbjct: 203 GIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADA 262

Query: 275 ACRGDRY-LTQPSW 287
                 Y L   + 
Sbjct: 263 ILANRLYILPHAAA 276

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score =  172 bits (438), Expect = 7e-53
 Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 16/237 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             KVV+I+G    +G  LA   A + A LVL AR   +L +VA Q    G   AL++  D
Sbjct: 10  TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRR-ALSVGTD 68

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYT--DITKPAPAMDINFWGSA 162
           ++      H VD TM+ +GR+D ++ NA  VP M  F + T   +     A+++  +G+ 
Sbjct: 69  ITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRD---AIELTVFGAL 125

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
                  P L+++KG ++ V S        +   Y  +K+A +A+ +TL  E G   GI 
Sbjct: 126 RLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEK-GIR 184

Query: 223 I--VTPGLIESEITGGKFLNKNGKLEVD-QEIRDVQISLLPV----QPTEECAKAIV 272
           +  V PG I        F ++ GK     ++I +   +   +       +E A AI+
Sbjct: 185 VNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTE-DEVASAIL 240

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score =  165 bits (419), Expect = 4e-50
 Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 16/245 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV--ARRERQLREVADQAELMGSPFALAIPA 104
           GKV+L+TG S GIGK +           V+   AR E  L+++ ++    G      +  
Sbjct: 2   GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEK---YGDR-FFYVVG 57

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAY 163
           D+++    K  V+  ++  G++D LV NAGV+ P+    +  D+       DINF+    
Sbjct: 58  DITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNE-IDVNAWKKLYDINFFSIVS 116

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
               A+P LK+T G ++ V+S A  +       Y +SKAA      TL  E    +    
Sbjct: 117 LVGIALPELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE-ERQVKAIA 175

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP----VQPTEECAKAIVNSACRG- 278
           V PG++++++         G   +  E   +   L      +      A      A  G 
Sbjct: 176 VAPGIVDTDMQ-VNIRENVGPSSMSAEQLKMFRGLKENNQLLDS-SVPATVYAKLALHGI 233

Query: 279 DRYLT 283
              + 
Sbjct: 234 PDGVN 238

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score =  163 bits (416), Expect = 2e-49
 Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 15/239 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF--ALAIP 103
           + K V+ITG+S+GIG+  A  +A+  A + +  R   +L E        G       ++ 
Sbjct: 5   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFWG 160
           ADV+  +     ++ T++ FG++D LV NAG      F               + +N   
Sbjct: 65  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124

Query: 161 SAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
               T    P+L  +KG+I+ V+S  AG    P   +Y  +KAA      +  ++     
Sbjct: 125 VIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKF- 183

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           GI +  V+PG++E+  T    +      +            +P+    +P E  A  I+
Sbjct: 184 GIRVNSVSPGMVETGFTNAMGMPDQAS-QKFYNFMASHKECIPIGAAGKP-EHIANIIL 240

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score =  163 bits (414), Expect = 4e-49
 Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 31/247 (12%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALAIP 103
           A KV +ITG+S+GIG+  A  +AR  A++ +  R   +L E   Q    G       ++ 
Sbjct: 5   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF---------EDYTDITKPAPAM 154
           ADV+        +  T+  FG+LD LV NAG                E Y         +
Sbjct: 65  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDAT------L 118

Query: 155 DINFWGSAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRV 213
           ++N       T  A+P+L  TKG+I+ ++S A+G    P   +Y+ +KAA         +
Sbjct: 119 NLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAI 178

Query: 214 EFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP------TE 265
           +     GI +  ++PGL+ +       + +    E  ++      ++    P       +
Sbjct: 179 DLIQH-GIRVNSISPGLVATGFGSAMGMPE----ETSKKFYSTMATMKECVPAGVMGQPQ 233

Query: 266 ECAKAIV 272
           + A+ I 
Sbjct: 234 DIAEVIA 240

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score =  162 bits (412), Expect = 4e-49
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 29/245 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF--ALA 101
           +    + +ITGAS GIG  +A   A    R+VL+AR ++ L +V D+           + 
Sbjct: 4   EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP----MCLFEDYTDITKPAPAMDIN 157
           +P D++        +    + +G +D LV  A +          +++  I      M+IN
Sbjct: 64  LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKI------MEIN 117

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                            Q  G I  VAS A          Y ++K A + L E+L  E  
Sbjct: 118 VIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELA 177

Query: 217 GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA 275
              I +T + PG + +++               ++          +QP ++    I    
Sbjct: 178 PLGIRVTTLCPGWVNTDMA--------------KKAGTPFKDEEMIQP-DDLLNTIRCLL 222

Query: 276 CRGDR 280
              + 
Sbjct: 223 NLSEN 227

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score =  159 bits (404), Expect = 4e-48
 Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 8/195 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KV +ITGAS GIG+ +A   AR    L L AR   +L ++A +              DV
Sbjct: 2   MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDV 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP--AM-DINFWGSAY 163
           SK E  + F    +E FG +D +V NAG+      E+            M ++N  G   
Sbjct: 62  SKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEE----LSEEEFHEMIEVNLLGVWR 117

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
                +  LK+T G  +V  S       P    Y ++K A  AL  T ++E   D+    
Sbjct: 118 TLKAFLDSLKRTGGLALVTTSDVSARLIPYGGGYVSTKWAARALVRTFQIE-NPDVRFFE 176

Query: 224 VTPGLIESEITGGKF 238
           + PG +++   G K 
Sbjct: 177 LRPGAVDTYFGGSKP 191

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230

 Score =  158 bits (401), Expect = 8e-48
 Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 21/231 (9%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
            +++ITGASSG+G  LA  Y        L  R E +L  V     L  +        D++
Sbjct: 2   SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVT--NCLSNN--VGYRARDLA 57

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
             ++ +   +   +       +V +AG     L ++  D  +    ++ N   +      
Sbjct: 58  SHQEVEQLFE---QLDSIPSTVVHSAGSGYFGLLQE-QDPEQIQTLIENNLSSAINVLRE 113

Query: 168 AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTP 226
            +   K     ++++ S A   P  + S Y A K A   L E++R+E  G  + I  V P
Sbjct: 114 LVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYP 173

Query: 227 GLIESEI--TGGKFLNKNGKL---EVDQEI-------RDVQISLLPVQPTE 265
           G + +E   T GK L+ +  +   +    I        +  +S + V    
Sbjct: 174 GGMATEFWETSGKSLDTSSFMSAEDAALMIHGALANIGNGYVSDITVNREG 224

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score =  159 bits (405), Expect = 2e-47
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 25/243 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALAIP 103
           +GK V+ITG+S+GIG+  A  +A+  A++ +  R E +L E   Q    G P     A+ 
Sbjct: 25  SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-------EDYTDITKPAPAMDI 156
           ADV++       ++ T+  FG++D LV NAG              E Y           +
Sbjct: 85  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKT------FKL 138

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           NF      T     +L +TKG+I+ V+S  AG        +Y  +KAA         ++ 
Sbjct: 139 NFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDL 198

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
               G+ +  V+PG + +   G   L +    +        +   +PV    +P EE A 
Sbjct: 199 IQH-GVRVNSVSPGAVATGFMGAMGLPETAS-DKLYSFIGSRKECIPVGHCGKP-EEIAN 255

Query: 270 AIV 272
            IV
Sbjct: 256 IIV 258

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281

 Score =  159 bits (404), Expect = 2e-47
 Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 13/235 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            G+V LITG +SG+G+ L   +    AR+ ++ +   +LRE+       G   A+ +  D
Sbjct: 4   TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGN-AVGVVGD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAP---AMDINFWGS 161
           V  ++D K   +  +  FG++D L+ NAG+        D  +    A       +N  G 
Sbjct: 60  VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            +     +P L  ++G ++   S AG+ P      Y A+K A + L   +  E    + +
Sbjct: 120 IHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAPHVRV 179

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
             V PG + +++ G   L  + +      + D+  S+LP+       EE   A V
Sbjct: 180 NGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPAL-EEYTGAYV 233

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score =  157 bits (399), Expect = 5e-47
 Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 10/237 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            ++GKV +ITG+SSGIG  +A  +A+  A +VLVAR+  +L E A   +       L + 
Sbjct: 4   GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  E     V+     FG  D LV NAG        +  D  K     ++    +  
Sbjct: 64  VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAAD-EKWQFYWELLVMAAVR 122

Query: 164 GTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
                +P ++    G II  AS     P      YN +KAA +   +TL  E   D  I 
Sbjct: 123 LARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKD-NIR 181

Query: 223 I--VTPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIV 272
           +  + PGLI +         L K+   +    ++ V     P++     EE A   V
Sbjct: 182 VNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFV 238

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272

 Score =  156 bits (396), Expect = 1e-46
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 28/239 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
               K+ ++TGA SG+G+ +A   A     + L  RR   L+E A  AE+     AL +P
Sbjct: 25  KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETA--AEIGDD--ALCVP 80

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTD-----ITKPAPAMDIN 157
            DV+  +  +     T+E FGR+D L  NAG   P    ED T      +      +D N
Sbjct: 81  TDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQV------VDTN 134

Query: 158 FWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
             G    T  A   +K  +   G+II   S +   P P  + Y A+K A   L ++  ++
Sbjct: 135 LTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLD 194

Query: 215 FGG-DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
               DI    +  G  ++ +          K++      D+ I + PV      A A+V
Sbjct: 195 GRVHDIACGQIDIGNADTPMA--------QKMKAGVPQADLSIKVEPVMDVAHVASAVV 245

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score =  155 bits (395), Expect = 2e-46
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 30/242 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  KV L+T ++ GIG  +A   A+  A +V+ +R++  +       +  G        
Sbjct: 11  PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLS-VTGTV 69

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYTD-----ITKPAPAMDIN 157
             V K ED +  V + +   G +D LV+NA V P      D T+     I      + +N
Sbjct: 70  CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKI------LHVN 123

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              +   T   +P   K+  G +++V+S   + P P +  YN SK A + L + L VE  
Sbjct: 124 VKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELA 183

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
               I +  + PGLI++  +          L +D+  ++     L +     P E+CA  
Sbjct: 184 PR-NIRVNCLAPGLIKTNFSQV--------LWMDKARKEYMKESLRIRRLGNP-EDCAGI 233

Query: 271 IV 272
           + 
Sbjct: 234 VS 235

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score =  155 bits (393), Expect = 3e-46
 Identities = 49/242 (20%), Positives = 93/242 (38%), Gaps = 22/242 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  K V+   A  GIG   + E  +R  +  ++  R      +A+   +          
Sbjct: 2   DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61

Query: 104 ADVS-KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            DV+  V + K  +    +    +D L+  AG++     E           + INF G  
Sbjct: 62  YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIER---------TIAINFTGLV 112

Query: 163 YGTYFAIPY-LKQTKGK---IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
             T   + +  K+  G    I  + S  G+    ++  Y+ASKAA ++   +L       
Sbjct: 113 NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT 172

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC 276
            G+T   + PG+  + +        N  L+V+  + +  +   P Q +E+C +  V +  
Sbjct: 173 -GVTAYSINPGITRTPLVH----TFNSWLDVEPRVAE-LLLSHPTQTSEQCGQNFVKAIE 226

Query: 277 RG 278
             
Sbjct: 227 AN 228

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score =  154 bits (391), Expect = 6e-46
 Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 28/240 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             KVV+ITG SSG+GK +A  +A+  AR+V+  R + +L E   + E       L +  D
Sbjct: 5   KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQ-ILTVQMD 63

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINFWG 160
           V   +D +  ++   E FGR+D L+ NA    +C  ED +      +      ++I   G
Sbjct: 64  VRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSV------INIVLNG 117

Query: 161 SAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           + Y +     Y   K  KG II + +   W   P +    A+KA  +A+ +TL VE+G  
Sbjct: 118 TFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRK 177

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            GI +  + PG IE             KL + +E+    I  +P+     P EE A    
Sbjct: 178 YGIRVNAIAPGPIERTGGA-------DKLWISEEMAKRTIQSVPLGRLGTP-EEIAGLAY 229

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281

 Score =  155 bits (393), Expect = 7e-46
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 29/243 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALA 101
               +  L+TG  SGIGK +A       A +++V R   +L     + E +G+       
Sbjct: 8   SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLFEDYT----DITKPAPAMDI 156
            P D++  ++    VD      GRL  +V  AG    +             T     +D+
Sbjct: 68  EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRT-----VDL 122

Query: 157 NFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G+ Y    A    ++   G  + ++S A          Y  +K+A   L +    E 
Sbjct: 123 NVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADEL 182

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
           G    + +  + PGLI +++           +    E+        P+    +  E+ A 
Sbjct: 183 GAS-WVRVNSIRPGLIRTDLVAA--------ITESAELSSDYAMCTPLPRQGEV-EDVAN 232

Query: 270 AIV 272
             +
Sbjct: 233 MAM 235

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score =  153 bits (390), Expect = 8e-46
 Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 15/235 (6%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
              + GKV LITGASSGIG+  A   A   A + + ARR  +LR + D+    G+     
Sbjct: 2   PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAK-VHV 60

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAM-DINF 158
           +  DV+  +     V  T+E  G LD LV NAG++ +   ED    D T     M D N 
Sbjct: 61  LELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWT----RMIDTNL 116

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
            G  Y T  A+P+L ++KG ++ ++S AG +     + Y A+K    A  ETLR E    
Sbjct: 117 LGLMYMTRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTER 176

Query: 219 -IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
            + + ++ PG  ++E                +        +  +Q  ++ A+A+ 
Sbjct: 177 GVRVVVIEPGTTDTE-----LRGHITHTATKEMYEQRISQIRKLQA-QDIAEAVR 225

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score =  153 bits (388), Expect = 1e-45
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 27/241 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  K+ ++TGA+ G+G  +  + +R    +  + R    L  +A+            I 
Sbjct: 2   SLKKKIAVVTGATGGMGIEIVKDLSRD-HIVYALGRNPEHLAALAEIEG------VEPIE 54

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP--AM-DINFWG 160
           +D+ K    +  VD  +++   +D LV  A V      E        A   A  D+N   
Sbjct: 55  SDIVKEVLEEGGVD-KLKNLDHVDTLVHAAAVARDTTIEA----GSVAEWHAHLDLNVIV 109

Query: 161 SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
            A  +   +P L+   G +I + S AG  P P  + Y ASK A   L +  R E   + I
Sbjct: 110 PAELSRQLLPALRAASGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGI 169

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD 279
            ++ V+PG   + +  G          +           + ++P +E A AI      G+
Sbjct: 170 RVSTVSPGPTNTPMLQG----------LMDSQGTNFRPEIYIEP-KEIANAIRFVIDAGE 218

Query: 280 R 280
            
Sbjct: 219 T 219

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score =  153 bits (390), Expect = 2e-45
 Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 25/237 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             K+ +ITGA+SGIG   A  +    AR+ +  RR+  L      AE+ G   A+ I AD
Sbjct: 28  NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI--AEIGGG--AVGIQAD 83

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWGS 161
            + + +     +      GR+D L  NAG   M    + T    D T      D N  G 
Sbjct: 84  SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDT-----FDRNVKGV 138

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            +    A+P L +    +++  S AG    P  S Y ASKAA  +      ++     GI
Sbjct: 139 LFTVQKALPLLAR-GSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDR-GI 196

Query: 222 TI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            I  ++PG  E+                 Q + +   + +P+    +  EE A A +
Sbjct: 197 RINTLSPGPTETTGLVELAGKDP---VQQQGLLNALAAQVPMGRVGRA-EEVAAAAL 249

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score =  152 bits (386), Expect = 2e-45
 Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 35/249 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRAR-------LVLVARRERQLREVADQAELMGSPFAL 100
            ++LITGA  GIG+ +A E+AR           LVL +R    L +++ +    G+    
Sbjct: 3   HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGAL-TD 61

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDI 156
            I AD+S + D +      +E +G +D LV NAGV       D T    D T     M+ 
Sbjct: 62  TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYT-----MNT 116

Query: 157 NFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G+ + T        +Q  G I  + S A        S Y  SK  +  L ET+R+  
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYA 176

Query: 216 GGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS 274
               + IT V PG + + + G           VD E++ + +        E+ A  +V +
Sbjct: 177 RKCNVRITDVQPGAVYTPMWGK----------VDDEMQALMM------MPEDIAAPVVQA 220

Query: 275 ACRGDRYLT 283
             +  R + 
Sbjct: 221 YLQPSRTVV 229

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score =  152 bits (386), Expect = 4e-45
 Identities = 63/240 (26%), Positives = 89/240 (37%), Gaps = 22/240 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIPA 104
             +VVLITG  SG+G+  A   A   A+L LV      L                L   A
Sbjct: 12  TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 71

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINFW 159
           DVS     + +V  T E FGR+D    NAG+       E +T    D       + IN  
Sbjct: 72  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKV-----VSINLR 126

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G   G    +    +Q  G ++  AS  G       S Y A+K   + L     VE+G  
Sbjct: 127 GVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRY 186

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            GI I  + PG I + +       K    E  ++  +  I + P     +   E A  + 
Sbjct: 187 -GIRINAIAPGAIWTPMVEN--SMKQLDPENPRKAAEEFIQVNPSKRYGEA-PEIAAVVA 242

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score =  151 bits (385), Expect = 6e-45
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 10/198 (5%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           V  KV+LITGAS GIG+ +A E     A+++L ARR+ ++  +A +    G   ALA   
Sbjct: 2   VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGT-ALAQVL 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAM-DINFWGS 161
           DV+       F    ++ +GR+D LV NAGV+P+         +       M D+N  G 
Sbjct: 61  DVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWE----RMIDVNIKGV 116

Query: 162 AYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
            +G    +P ++  + G+II + S       P  + Y A+K A  A+ + LR E   +I 
Sbjct: 117 LWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE-STNIR 175

Query: 221 ITIVTPGLIESEITGGKF 238
           +T V PG++ESE+ G   
Sbjct: 176 VTCVNPGVVESELAGTIT 193

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280

 Score =  152 bits (386), Expect = 6e-45
 Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 27/242 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GK+ ++TGASSGIG+  A  +AR  A++V+ AR    L E+ D+    G   A A+ 
Sbjct: 5   RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGE-AAALA 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINF 158
            DV      +  V++ +  FG LD    NAG +  M      +      T     +D N 
Sbjct: 64  GDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRET-----LDTNL 118

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWL-PPPRMSFYNASKAAKIALYETLRVEFG 216
             +     + +P       G +   +S  G       ++ Y ASKA  I L + L VE G
Sbjct: 119 TSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELG 178

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
              GI +  + PG  ++                  E R     L  +    +P EE A+A
Sbjct: 179 AR-GIRVNALLPGGTDTPANFANL------PGAAPETRGFVEGLHALKRIARP-EEIAEA 230

Query: 271 IV 272
            +
Sbjct: 231 AL 232

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262

 Score =  151 bits (384), Expect = 7e-45
 Identities = 57/248 (22%), Positives = 98/248 (39%), Gaps = 30/248 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            ++G+V ++TGAS GIG  +A +     AR+VL AR   +LR V  +    G   A +  
Sbjct: 26  SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGE-AESHA 84

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF------EDYTDITKPAPAMDIN 157
            D+S  +    F    +   GR D LV NAGV             ++  +      + +N
Sbjct: 85  CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDAL------IAVN 138

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                       P  +   +G II ++S AG  P    + Y ASK     L  +   E  
Sbjct: 139 LKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELR 198

Query: 217 GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA 275
              + +++V PG + +E                  +   + +L  ++P ++ A  +   A
Sbjct: 199 QHQVRVSLVAPGSVRTEFG--------------VGLSAKKSALGAIEP-DDIADVVALLA 243

Query: 276 CRGDRYLT 283
            + D+   
Sbjct: 244 TQADQSFI 251

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score =  151 bits (384), Expect = 9e-45
 Identities = 53/243 (21%), Positives = 89/243 (36%), Gaps = 21/243 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ--AELMGSPFALA 101
           D++  V ++TG SSGIG           A +   AR   +LR           G+    A
Sbjct: 5   DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGAR-LFA 63

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA---PAMDINF 158
              DV      + F +      G    LV NAG   +  F +    T        + + F
Sbjct: 64  SVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAE----TTDEAWSEELQLKF 119

Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
           +   +     +P L  +    I+ V S     P P M   +A++A    L  ++  EF  
Sbjct: 120 FSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAP 179

Query: 218 DIGITI--VTPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
             G+ +  +  GL+ES     +F    +          +  +   +P+    +P  E A+
Sbjct: 180 K-GVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKP-IEAAR 237

Query: 270 AIV 272
           AI+
Sbjct: 238 AIL 240

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254

 Score =  150 bits (382), Expect = 2e-44
 Identities = 66/244 (27%), Positives = 112/244 (45%), Gaps = 26/244 (10%)

Query: 41  NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFAL 100
           + + +  KVV++TGA SGIG+ +A ++A   + +V V   E +L ++  +   MG    L
Sbjct: 1   SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKE-VL 59

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMD 155
            + ADVSK +D + FV  T E + R+D L  NAG++  +    + +    +       + 
Sbjct: 60  GVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERV-----LA 114

Query: 156 INFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
           +N + + Y +   IP  LKQ KG I+  AS AG       + Y  +K   I L  ++   
Sbjct: 115 VNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAH 174

Query: 215 FGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECA 268
           +G   GI    V PG +++ I              +  +R +   +       +P E+ A
Sbjct: 175 YGDQ-GIRAVAVLPGTVKTNIG------LGSSKPSELGMRTLTKLMSLSSRLAEP-EDIA 226

Query: 269 KAIV 272
             IV
Sbjct: 227 NVIV 230

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283

 Score =  151 bits (383), Expect = 2e-44
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           +    V LITGA SGIG+  A   A     +  + R   ++ EVAD+    G   A+A+ 
Sbjct: 25  NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQ-AIALE 83

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINF 158
           ADVS     ++ V   +  FG LD +V NAG+       +D      D T     + +N 
Sbjct: 84  ADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDET-----IAVNL 138

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGW--LPPPRMSFYNASKAAKIALYETLRVEF 215
            G+    +  +PY  ++  G I+VV+S  G      P  + Y A+KAA++A+ + L +E 
Sbjct: 139 RGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALEL 198

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKA 270
           G    I +  V PG IE+ I+    L    +  +  E    Q+ +      +  E+ A+ 
Sbjct: 199 GKH-HIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRS-EDVAEL 256

Query: 271 IV 272
           I 
Sbjct: 257 IR 258

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277

 Score =  150 bits (382), Expect = 3e-44
 Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 26/240 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  +V ++TG  SGIG+  A  +A+  A +V+    E     VA   E+     A  + 
Sbjct: 24  DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVA--NEIGSK--AFGVR 79

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            DVS  +D +  V+ T   +GR+D LV NAG               D       M +N  
Sbjct: 80  VDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRI-----MSVNVK 134

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G    + + IP   +   G II   S          + Y ASK A  +L   + ++   +
Sbjct: 135 GIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKE 194

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            GI +  V PG I+S      F     + +   ++R    +   +       EE A+A++
Sbjct: 195 -GIRVNAVAPGTIDSPYFTKIF----AEAKDPAKLRSDFNARAVMDRMGTA-EEIAEAML 248

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262

 Score =  149 bits (379), Expect = 4e-44
 Identities = 58/245 (23%), Positives = 89/245 (36%), Gaps = 26/245 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV L+TGA   IG   A   A     + L+      L +        G   A +   D
Sbjct: 6   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE-ARSYVCD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINFWG 160
           V+  E     VD  +  FG++D L  NAG        +DY             + IN  G
Sbjct: 65  VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARV-----LTINVTG 119

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
           + +         + Q  G+I+  AS AG   PP M+ Y  SK A IAL ET  ++     
Sbjct: 120 AFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY- 178

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVD------QEIRDVQISLLPV----QPTEEC 267
            I +  ++PG +       + +    K+         + +    I  +P+        E 
Sbjct: 179 NIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDI-NEI 237

Query: 268 AKAIV 272
              + 
Sbjct: 238 PGVVA 242

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270

 Score =  149 bits (379), Expect = 7e-44
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 23/236 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGKVV++TG   GIG  +   +    AR+V+  + E   R +  +   +    A+ I  D
Sbjct: 8   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE---LPG--AVFILCD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYT--DITKPAPAMDINFWGSA 162
           V++ +D K  V  T+  FGRLD +V NAG   P    E+ +     +    +++N  G+ 
Sbjct: 63  VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQ---LLELNLLGTY 119

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
             T  A+PYL++++G +I ++S  G +   +   Y A+K A  A+ + L ++     G+ 
Sbjct: 120 TLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPY-GVR 178

Query: 223 I--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           +  ++PG I + +           +   +      +   P+    QP  E   A V
Sbjct: 179 VNCISPGNIWTPLWEELA----ALMPDPRASIREGMLAQPLGRMGQP-AEVGAAAV 229

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score =  148 bits (377), Expect = 8e-44
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 15/198 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GK  +ITGA +GIGK +A  +A   A +V+          V D+ + +G   A A  
Sbjct: 8   RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ-AFACR 66

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF----EDYTDITKPAPAMDINFW 159
            D++  ++     D  +   G++D LV NAG      F     D+          ++N +
Sbjct: 67  CDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRA------YELNVF 120

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
              + +    P   K   G I+ + S A       M+ Y +SKAA   L   +  + G  
Sbjct: 121 SFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEK 180

Query: 219 IGITI--VTPGLIESEIT 234
             I +  + PG I ++  
Sbjct: 181 -NIRVNGIAPGAILTDAL 197

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234

 Score =  148 bits (375), Expect = 8e-44
 Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 14/195 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
              VLITGAS GIG+  A     +  R+ L+AR E++L+ +A  AEL G   AL +P DV
Sbjct: 5   KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA--AELEG---ALPLPGDV 59

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAM-DINFWGSAY 163
            +  D    V    E FG L  LV NAGV  M    +            + D N  G+  
Sbjct: 60  REEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHE----LTLEEWRLVLDTNLTGAFL 115

Query: 164 GTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           G   A+P L +   G I+ V S AG  P    + YNASK   + L     ++     + +
Sbjct: 116 GIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRV 175

Query: 222 TIVTPGLIESEITGG 236
             V PG +++   G 
Sbjct: 176 VNVLPGSVDTGFAGN 190

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281

 Score =  149 bits (378), Expect = 1e-43
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 24/244 (9%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF 98
                   G++ L+TG  +G+G+ +A   +     +V+  RR   L   A +        
Sbjct: 25  AQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNI 84

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----- 153
             A+  DV   +            F RLD LV NAG            + +         
Sbjct: 85  VRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGS-----NVPPVPLEEVTFEQWNGI 139

Query: 154 MDINFWGSAYGTYFAIPY-LKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
           +  N  G+   T  A      QT   G+II   S +   P P  + Y A+K A   L ++
Sbjct: 140 VAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKS 199

Query: 211 LRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA 268
             ++      I    +  G   +++T         ++       + +++  P  P E  A
Sbjct: 200 TALDGRMH-DIACGQIDIGNAATDMT--------ARMSTGVLQANGEVAAEPTIPIEHIA 250

Query: 269 KAIV 272
           +A+V
Sbjct: 251 EAVV 254

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score =  147 bits (373), Expect = 2e-43
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS--PFALAIP 103
            G+V+L+TGA+ GIG   A  YA   A +VL+ R E  L EV+DQ +  G   P  +A+ 
Sbjct: 13  KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALN 72

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYTDIT--KPAPAMDINFWG 160
            + +  +  +         FGRLD L+ NA ++ P    E   D    +    M +N   
Sbjct: 73  LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQ---VMHVNVNA 129

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
           +   T   +P L +     I   +S+ G         Y  SK A   L +TL  E  G  
Sbjct: 130 TFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLADELEGVT 189

Query: 220 GITI--VTPGLIESEITGGKFLNKN 242
            +    + PG   + +    + ++N
Sbjct: 190 AVRANSINPGATRTGMRAQAYPDEN 214

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250

 Score =  147 bits (373), Expect = 3e-43
 Identities = 65/235 (27%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +V ++TGASSG G  +A  +  R  R+  +      L E A       +   L + ADV
Sbjct: 2   SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSAYG 164
           +   D    +  TME FG +D LV NAG+                    M +N  G   G
Sbjct: 62  ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121

Query: 165 TYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
               +P+ L Q  G I+ +AS A  +  P  S Y  SK A + L +++ V++ G  GI  
Sbjct: 122 CRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGS-GIRC 180

Query: 224 --VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
             V PG+IE+ +T               E+RD  ++ +P         + A A++
Sbjct: 181 NAVCPGMIETPMTQW--------RLDQPELRDQVLARIPQKEIGTA-AQVADAVM 226

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score =  147 bits (374), Expect = 4e-43
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 20/221 (9%)

Query: 32  FLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA 91
           +    +     E    ++ L+TGAS GIG  +A    ++  ++V  AR    + E+A + 
Sbjct: 17  YFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC 76

Query: 92  ELMGSPF-ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYT 145
           +  G P   +    D+S  ED              +D  + NAG+             + 
Sbjct: 77  KSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWK 136

Query: 146 DITKPAPAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGW--LPPPRMSFYNAS 200
           D+       ++N    +  T  A   +K+     G II + S +G   LP     FY+A+
Sbjct: 137 DM------FNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSAT 190

Query: 201 KAAKIALYETLRVEF---GGDIGITIVTPGLIESEITGGKF 238
           K A  AL E LR E       I  T ++PG++E++      
Sbjct: 191 KYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLH 231

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252

 Score =  147 bits (372), Expect = 4e-43
 Identities = 28/200 (14%), Positives = 64/200 (32%), Gaps = 14/200 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
               V + GA   IG  +A ++A     +    R   +L  +  + E  G    +A   D
Sbjct: 6   RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGR-IVARSLD 64

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA---PAMDINFWGSA 162
               ++   F++   +    L+  + N G        +    T         ++  W   
Sbjct: 65  ARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVNFPILE----TTDRVFRKVWEMACWAGF 119

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
                +    L   +GKI    + A        + + ++K    A+ +++  E      I
Sbjct: 120 VSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPK-NI 178

Query: 222 T---IVTPGLIESEITGGKF 238
               ++    +++     + 
Sbjct: 179 HVAHLIIDSGVDTAWVRERR 198

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score =  147 bits (373), Expect = 1e-42
 Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 27/255 (10%)

Query: 31  KFLHFVIRTINAEDV-AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD 89
           KF   + + +   +   GKV  ITG  +G+GK +    +   A+ V+ +R+   L+  A+
Sbjct: 9   KFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE 68

Query: 90  QAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--- 146
           Q          AI  DV   +  ++ V   ++  G  + ++ NA    +   E  +    
Sbjct: 69  QISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAW 128

Query: 147 --ITKPAPAMDINFWGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKA 202
             I       DI   G+A+ T      L   Q     + + +         +    ++KA
Sbjct: 129 KTI------TDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKA 182

Query: 203 AKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP 260
              A+ ++L  E+G   G+    + PG I+++           +L+         I  +P
Sbjct: 183 GVEAMSKSLAAEWGKY-GMRFNVIQPGPIKTKGAF-------SRLDPTGTFEKEMIGRIP 234

Query: 261 VQ---PTEECAKAIV 272
                  EE A    
Sbjct: 235 CGRLGTVEELANLAA 249

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score =  144 bits (367), Expect = 2e-42
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 26/237 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  ++ G + G+G           A ++L  R E  +  +    E        A+ +D
Sbjct: 7   QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIR--EEFGPR--VHALRSD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWGS 161
           ++ + +         +  G +D L  NAGV  +  F+  +    D         +N  G+
Sbjct: 63  IADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQ-----FAVNTKGA 117

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            +      P +++  G I+  +S A     P MS Y+ASKAA ++    L  E     GI
Sbjct: 118 FFTVQRLTPLIRE-GGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPR-GI 175

Query: 222 TI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            +  V+PG I++   G   + +        E + +  ++ P+       +E A+A++
Sbjct: 176 RVNSVSPGFIDTPTKGVAGITE----AERAEFKTLGDNITPMKRNGTA-DEVARAVL 227

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score =  143 bits (364), Expect = 2e-42
 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 19/202 (9%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           VLITGA+ G+G   A   A +   L+L  RR   L E+A +        A A+PAD++  
Sbjct: 3   VLITGATGGLGGAFAR--ALKGHDLLLSGRRAGALAELAREVG------ARALPADLADE 54

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI 169
            + K  +    E  G LD LV   G        +          +  +         F +
Sbjct: 55  LEAKALL----EEAGPLDLLVHAVGKAGRASVRE-AGRDLVEEMLAAHL----LTAAFVL 105

Query: 170 PY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG 227
            +   Q   + +   +   ++  P  + Y A+K A  A  E  R E   + + + +V   
Sbjct: 106 KHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLP 165

Query: 228 LIESEITGGKFLNKNGKLEVDQ 249
            + + +         G L  ++
Sbjct: 166 AVATGLWAPLGGPPKGALSPEE 187

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266

 Score =  145 bits (368), Expect = 2e-42
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 16/196 (8%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
                 K+V+ITGASSGIG+ +A  ++     L+L+ARR  +L+ +            L 
Sbjct: 11  GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPN-------TLC 63

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFE--DYTDITKPAPAM-DINF 158
              DV+        +    + +G  D +V NAG++ +   +  +  +       M D+N 
Sbjct: 64  AQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQ----RMFDVNV 119

Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G   G    +  +  +  G II ++S AG    P  + Y  +K A  A+ E +R E   
Sbjct: 120 LGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVREEVAA 179

Query: 218 D-IGITIVTPGLIESE 232
             + +  + P  +++E
Sbjct: 180 SNVRVMTIAPSAVKTE 195

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score =  144 bits (366), Expect = 3e-42
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 13/197 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             +++L+TGAS GIG+  A  YAR  A ++L+ R E +LR+VA                D
Sbjct: 11  NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILD 70

Query: 106 --VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINF 158
                 E+C+        ++ RLD ++ NAG++  +C   +              M +N 
Sbjct: 71  LLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV-----MQVNV 125

Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             +   T   +P L K   G ++  +S+ G         Y ASK A   + + L  E+  
Sbjct: 126 NATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLADEYQQ 185

Query: 218 DIGITIVTPGLIESEIT 234
            + +  + PG   + + 
Sbjct: 186 RLRVNCINPGGTRTAMR 202

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261

 Score =  143 bits (364), Expect = 8e-42
 Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 33/245 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV LITGA SG G+ +A  +A+  A++V+V R +     VA   E+  +  ALA+ 
Sbjct: 6   SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVA--GEIGDA--ALAVA 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT----DITKPAPAMDINF 158
           AD+SK  D    V+  +  FG++D LV NAG+       E       D       + +N 
Sbjct: 62  ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRI-----VGVNV 116

Query: 159 WGSAYGTYFAIPYLKQTKG-----KIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRV 213
            G    T   IP+ K+         I+ VAS     P P +++YNA+K   +++ + L +
Sbjct: 117 RGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAI 176

Query: 214 EFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEEC 267
           E      I +  + P   E+ +            E  +EIR      +P+    +P ++ 
Sbjct: 177 ELAPA-KIRVVALNPVAGETPLLTTFM------GEDSEEIRKKFRDSIPMGRLLKP-DDL 228

Query: 268 AKAIV 272
           A+A  
Sbjct: 229 AEAAA 233

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score =  143 bits (364), Expect = 9e-42
 Identities = 61/207 (29%), Positives = 83/207 (40%), Gaps = 19/207 (9%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
                   + ITGA+SG G+  A  +A     LVL  RRE +L+ +A   EL      L 
Sbjct: 16  RGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALA--GELSAKTRVLP 73

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV------VPMCLFEDYTDITKPAPAM- 154
           +  DV         VD   E F  L  L+ NAG+         C  +D+         M 
Sbjct: 74  LTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWD-------TMV 126

Query: 155 DINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           D N  G  Y T   +P L        I+ + S AG  P P    Y  +KA        LR
Sbjct: 127 DTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLR 186

Query: 213 VEFGGD-IGITIVTPGLIESEITGGKF 238
            +  G  + +T + PGL ESE +  +F
Sbjct: 187 CDLQGTGVRVTNLEPGLCESEFSLVRF 213

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score =  143 bits (363), Expect = 9e-42
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 17/255 (6%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRR---ARLVLVARRERQLREVADQ-AELMGSP 97
           A+ +   V ++TGAS G G+ LA + AR     + +++ AR E  LR++ ++        
Sbjct: 1   ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60

Query: 98  FALAIPADVSKVEDCKHFVDVTME----HFGRLDHLVTNAGVVPMCLFEDYTDITKPA-- 151
             +   AD+      +  +    E       +   L+ NA  +                 
Sbjct: 61  KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120

Query: 152 PAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
               +N       T   +   + +      ++ ++S     P      Y A KAA+  LY
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180

Query: 209 ETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA 268
           + L  E    + +    PG +++++   +   +  K    +       S   +      A
Sbjct: 181 QVLAAE-EPSVRVLSYAPGPLDNDMQ--QLARETSKDPELRSKLQKLKSDGALVDCGTSA 237

Query: 269 KAIVNSACRGDRYLT 283
           + ++    + D + +
Sbjct: 238 QKLLG-LLQKDTFQS 251

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269

 Score =  143 bits (364), Expect = 9e-42
 Identities = 60/247 (24%), Positives = 99/247 (40%), Gaps = 31/247 (12%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
              + E+   KV ++TG SSGIG  +     R  A++V V+  E+    V+D        
Sbjct: 5   HHHHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSD-------- 56

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPA 153
                  DV+  E+ K  V+ T + +GR+D LV NAG+                      
Sbjct: 57  ---HFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRI----- 108

Query: 154 MDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           +D+N  GS     + IP  L    G II +AS   +      + Y  SK A + L  ++ 
Sbjct: 109 IDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVA 168

Query: 213 VEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLE-VDQEIRDVQISLLPV----QPTE 265
           +++     I    V PG I + +       + G+ E   +   +      P+    +P E
Sbjct: 169 IDYAP--KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRP-E 225

Query: 266 ECAKAIV 272
           E A+ + 
Sbjct: 226 EVAEVVA 232

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score =  143 bits (363), Expect = 1e-41
 Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 31/243 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAI 102
           D+ GKVV+ITG+S+G+GK +A  +A  +A++V+    +E +   V ++ + +G   A+A+
Sbjct: 4   DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIAV 62

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDIN 157
             DV+   D  + V   ++ FG+LD ++ NAG+            D+  +      +D N
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKV------IDTN 116

Query: 158 FWGSAYGTYFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
             G+  G+  AI Y ++   KG +I ++S    +P P    Y ASK     + ETL +E+
Sbjct: 117 LTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEY 176

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
               GI +  + PG I + I          +   D E R    S++P+    +P EE A 
Sbjct: 177 APK-GIRVNNIGPGAINTPIN--------AEKFADPEQRADVESMIPMGYIGEP-EEIAA 226

Query: 270 AIV 272
              
Sbjct: 227 VAA 229

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256

 Score =  143 bits (362), Expect = 1e-41
 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 15/198 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +   V ++TGA++GIG+ +A  +A+  A +V+   +      VA      G   A+ + 
Sbjct: 9   HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGK-AIGLE 67

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF----EDYTDITKPAPAMDINFW 159
            +V+  +  +  +   ++ FG++  LV NAG      F     D+           +N +
Sbjct: 68  CNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWA------FKLNLF 121

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
                +  A P+  K   G I+ ++S AG     RM+ Y +SKAA   L   +  + G  
Sbjct: 122 SLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPM 181

Query: 219 IGITI--VTPGLIESEIT 234
            GI +  + PG I+++  
Sbjct: 182 -GIRVNAIAPGAIKTDAL 198

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277

 Score =  143 bits (363), Expect = 2e-41
 Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 25/246 (10%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
            ++N  D+AGKV ++TGA +GIG  +A   A     ++            A   ++    
Sbjct: 20  GSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAA--TKIGCG- 76

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPA 153
            A A   DVS  +     VD  +  FG +D LV NAGVV +    D T    D       
Sbjct: 77  -AAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRV----- 130

Query: 154 MDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           + IN  G+   T  A P  +++  G I+ ++S AG +       Y  SKA  I L     
Sbjct: 131 IAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITA 190

Query: 213 VEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEE 266
            E     GI    + P  +++ +        +G L        +            P EE
Sbjct: 191 AELRSS-GIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIAR---LQGRMAAP-EE 245

Query: 267 CAKAIV 272
            A  +V
Sbjct: 246 MAGIVV 251

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score =  143 bits (362), Expect = 2e-41
 Identities = 53/238 (22%), Positives = 89/238 (37%), Gaps = 25/238 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             KV  ITG  SGIG  +A  + R     V+ +R   ++   A +         L +  D
Sbjct: 26  RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMD 85

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINFWG 160
           V         VD  ++ FGR+D L+  A    +C     +      +      MDI+  G
Sbjct: 86  VRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTV------MDIDTSG 139

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
           +   +        +   G I+ + +  G           ++KAA  A+   L VE+G   
Sbjct: 140 TFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ- 198

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIV 272
            I +  + PG I    T G       +L   Q     +++  P+Q      E A +++
Sbjct: 199 NIRVNSLAPGPISG--TEGL-----RRLGGPQASLSTKVTASPLQRLGNKTEIAHSVL 249

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260

 Score =  142 bits (360), Expect = 3e-41
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 32/244 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  +V ++TG +  IG       A   AR+++    E    +  +   + G     ++ 
Sbjct: 10  RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHD-VSSVV 68

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLFEDYTD-----ITKPAPAMDIN 157
            DV+  E  ++ V    E  GR+D LV  AG+ +     ED TD            +DIN
Sbjct: 69  MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQ------VDIN 122

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVE 214
             G            L+Q +G I+ + S +G +   P + + YNASKA       +L  E
Sbjct: 123 LNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAE 182

Query: 215 FGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECA 268
           +    GI    V P  IE+ +T               E+ D  I+  P+    QP +E A
Sbjct: 183 WAPH-GIRANAVAPTYIETTLT--------RFGMEKPELYDAWIAGTPMGRVGQP-DEVA 232

Query: 269 KAIV 272
             + 
Sbjct: 233 SVVQ 236

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score =  142 bits (360), Expect = 4e-41
 Identities = 65/214 (30%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 34  HFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARR---RARLVLVARRERQLREVADQ 90
           H       AE +A K VLITGAS+GIGK  A EY        +L+L ARR  +L E+   
Sbjct: 20  HMSQGRKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKT 79

Query: 91  -AELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITK 149
             +   +        D+++ E  K F++   + F  +D LV NAG     L  D      
Sbjct: 80  IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKA---LGSDRVGQIA 136

Query: 150 PA--PAM-DINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI 205
                 + D N       T   +P  +    G I+ + S AG    P  S Y ASK A  
Sbjct: 137 TEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVG 196

Query: 206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKF 238
           A  ++LR E     I + ++ PGL+E+E +  ++
Sbjct: 197 AFTDSLRKELINTKIRVILIAPGLVETEFSLVRY 230

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score =  141 bits (359), Expect = 5e-41
 Identities = 62/242 (25%), Positives = 90/242 (37%), Gaps = 29/242 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GK  LITGA+ GIG  +A  +A   ARLVL  R   +L                 + 
Sbjct: 17  RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINF 158
            D+++ +          E FG LD LV NAG+       D               + +N 
Sbjct: 77  IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDAT------IAVNL 130

Query: 159 WGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              A         +      G II VASAA   P P    Y  SKA  +   + L  E G
Sbjct: 131 RAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELG 190

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
              GI    V P ++ +E+          ++  D+      I+ +P+     P  E + A
Sbjct: 191 PH-GIRANSVCPTVVLTEMG--------QRVWGDEAKSAPMIARIPLGRFAVP-HEVSDA 240

Query: 271 IV 272
           +V
Sbjct: 241 VV 242

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score =  143 bits (361), Expect = 1e-40
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQA 91
             N   +AG  V ITGAS GIGK +A + A+  A +V+ A+  +        +   A++ 
Sbjct: 37  LPNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEI 96

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DI 147
           E +G   AL    DV   +     V+  ++ FG +D LV NA  + +    D      D+
Sbjct: 97  EAVGGK-ALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDL 155

Query: 148 TKPAPAMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLP--PPRMSFYNASKAAK 204
                 M++N  G+   +   IPYL K     I+ ++      P    +   Y  +K   
Sbjct: 156 M-----MNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGM 210

Query: 205 IALYETLRVEFGGDIGITIVTPG-LIESEITGGKFLNKNGKLEVDQEIRDVQI 256
                 +  EF G+I +  + P   I +        +  G   ++ + R V I
Sbjct: 211 SMYVLGMAEEFKGEIAVNALWPKTAIHTAAM-----DMLGGPGIESQCRKVDI 258

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score =  140 bits (355), Expect = 2e-40
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 26/244 (10%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-AL 100
           A  V GKV L+TGA+ GIG+  A     + A++ LV        +          P   L
Sbjct: 2   AHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTL 61

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
            I  DV+  +  +      ++HFGRLD LV NAGV      +++         + IN   
Sbjct: 62  FIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNE---KNWEKT------LQINLVS 112

Query: 161 SAYGTYFAIPY-LKQTKGK---IIVVASAAGWLPPPRMSFYNASKAAKIALYET--LRVE 214
              GTY  + Y  KQ  G+   II ++S AG +P  +   Y ASK   +    +  L   
Sbjct: 113 VISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAAN 172

Query: 215 FGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECA 268
                G+ +  + PG + + I     + K   +    E +D    ++       P    A
Sbjct: 173 LMNS-GVRLNAICPGFVNTAILES--IEKEENMGQYIEYKDHIKDMIKYYGILDP-PLIA 228

Query: 269 KAIV 272
             ++
Sbjct: 229 NGLI 232

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271

 Score =  140 bits (356), Expect = 2e-40
 Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 33/242 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++  KV +ITGA  GIG   +   AR  AR+VL    E  L   A  A +     A+   
Sbjct: 8   ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA--ASVGRG--AVHHV 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM--CLFEDYT----DITKPAPAMDIN 157
            D++     +  +D T++ FGRLD +  NA        L    T    D T       +N
Sbjct: 64  VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDT-----FTVN 118

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G+     +AIP  +    G I+ ++SA         + Y  +KAA   L   +  ++G
Sbjct: 119 ARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYG 178

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
              G+    + PGL+ +                 Q I D+  +        +P  E A+ 
Sbjct: 179 RH-GVRCNAIAPGLVRTPRLEVGL---------PQPIVDIFATHHLAGRIGEP-HEIAEL 227

Query: 271 IV 272
           + 
Sbjct: 228 VC 229

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266

 Score =  139 bits (352), Expect = 5e-40
 Identities = 64/241 (26%), Positives = 93/241 (38%), Gaps = 31/241 (12%)

Query: 46  AGKVVLITGAS-SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
            GKVVL+T A+ +GIG   A       A +V+    ER+L E  DQ   +G     A+  
Sbjct: 21  KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVC 80

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFW 159
           DV+  E     +  T+E  GRLD LV NAG+           E++  +      +++   
Sbjct: 81  DVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRV------LNVTLT 134

Query: 160 GSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                T  A+ Y       G I+  AS  GW      S Y A+KA  +AL     +E   
Sbjct: 135 SVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVE 194

Query: 218 DIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
             G+ I  V+P +   +                 E+ D   S        +P  E A  I
Sbjct: 195 F-GVRINAVSPSIARHKFLEK---------TSSSELLDRLASDEAFGRAAEP-WEVAATI 243

Query: 272 V 272
            
Sbjct: 244 A 244

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score =  140 bits (354), Expect = 5e-40
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 29/242 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF----ALA 101
            G+V ++TG ++GIGK +  E     + +V+ +R+  +L+  AD+ +    P      + 
Sbjct: 17  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDI 156
           I  ++   E+  + V  T++ FG+++ LV N G   +   E  +      +      ++ 
Sbjct: 77  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAV------LET 130

Query: 157 NFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G+ Y         +K+  G I+ +         P      A++A    L ++L +E+
Sbjct: 131 NLTGTFYMCKAVYSSWMKEHGGSIVNI-IVPTKAGFPLAVHSGAARAGVYNLTKSLALEW 189

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKA 270
               GI I  V PG+I S+     +          Q   +     +P +     EE +  
Sbjct: 190 ACS-GIRINCVAPGVIYSQTAVENY------GSWGQSFFEGSFQKIPAKRIGVPEEVSSV 242

Query: 271 IV 272
           + 
Sbjct: 243 VC 244

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273

 Score =  139 bits (352), Expect = 6e-40
 Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 26/242 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G   L+TG S GIG  +  E A   AR+   +R E++L E  +     G        
Sbjct: 18  SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN-VEGSV 76

Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDIN 157
            D+    +    +      F G+L+ LV NAGVV     +D+T+     I      M  N
Sbjct: 77  CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNII------MGTN 130

Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           F  + + +  A P L     G +I ++S AG+   P +S Y+ASK A   + ++L  E+ 
Sbjct: 131 FEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWA 190

Query: 217 GDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
            D  I +  V PG+I + +          + E         I   P+    +P +E +  
Sbjct: 191 KD-NIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNF----IVKTPMGRAGKP-QEVSAL 244

Query: 271 IV 272
           I 
Sbjct: 245 IA 246

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256

 Score =  138 bits (350), Expect = 7e-40
 Identities = 58/238 (24%), Positives = 91/238 (38%), Gaps = 29/238 (12%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGK VL+TG + GIG+ +A  +AR  A + L   R  + +EVA+               D
Sbjct: 5   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP-EGKEVAEAIG------GAFFQVD 57

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWGS 161
           +    +   FV+      GR+D LV NA +                      +++N    
Sbjct: 58  LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRV-----LEVNLTAP 112

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
            + +  A     K   G I+ VAS  G       + YNASK   + L  +L ++      
Sbjct: 113 MHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPL-R 171

Query: 221 ITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           I +  V PG I +E                +  R     L  +    +P EE A+A++
Sbjct: 172 IRVNAVAPGAIATEAVLEAI----ALSPDPERTRRDWEDLHALRRLGKP-EEVAEAVL 224

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244

 Score =  138 bits (349), Expect = 7e-40
 Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           A    L+TG S GIGK +     + +   V+    ++                   I AD
Sbjct: 3   AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAEN----------LKFIKAD 52

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAY 163
           ++K +D  + +D+        D +  NAG++      D     I K    +D+N W S Y
Sbjct: 53  LTKQQDITNVLDII--KNVSFDGIFLNAGILIKGSIFDIDIESIKK---VLDLNVWSSIY 107

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
                   LK     I+   S   ++  P    Y  SK A   + ++L ++      I +
Sbjct: 108 FIKGLENNLKV-GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKY-QIRV 165

Query: 224 --VTPGLIESEITGGKFLNKNGKLEVDQE-IRDVQISLLPV----QPTEECAKAIV 272
             V PG +++++           + +  +  +  +    P+    QP +E A+ ++
Sbjct: 166 NTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQP-QEIAELVI 220

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score =  137 bits (348), Expect = 1e-39
 Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 28/240 (11%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKV L+TG +SG+G  +        A++      E   +++A  AEL     ++ +  
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA--AELGER--SMFVRH 59

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWG 160
           DVS   D    +       G L+ LV NAG++     E               + IN   
Sbjct: 60  DVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRL-----LKINTES 114

Query: 161 SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
              G    I  +K+T G II +AS + WLP  + + Y+ASKAA  AL     +      G
Sbjct: 115 VFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQ-G 173

Query: 221 ITI----VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
             I    + P  I + +             V +E+      L        P E  A+ ++
Sbjct: 174 YAIRVNSIHPDGIYTPMMQASL-----PKGVSKEMVLHDPKLNRAGRAYMP-ERIAQLVL 227

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score =  137 bits (348), Expect = 2e-39
 Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 32/241 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  KVV++TGAS GIG+ +A  +    ++++ ++  +    +               I 
Sbjct: 5   DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAK------------YDHIE 52

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            DV+  +  K  +D   + +G +  LV NAG+      E  +            +D+N +
Sbjct: 53  CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRI-----IDVNLF 107

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G  Y + FAIPY ++     I+ ++S    +     S Y  SK A I L +++ +++   
Sbjct: 108 GYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP- 166

Query: 219 IGITI--VTPGLIESEITGGKF-LNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
             +    V P  I++ +      L         ++         P+    +P +E A A+
Sbjct: 167 -LLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKP-QEVASAV 224

Query: 272 V 272
            
Sbjct: 225 A 225

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279

 Score =  137 bits (348), Expect = 3e-39
 Identities = 52/240 (21%), Positives = 100/240 (41%), Gaps = 26/240 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV  +TG+S GIG  +A  YA+  A + +         +     +  G   + A  
Sbjct: 31  SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVH-SKAYK 89

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV----VPMCLFEDYTDITKPAPAMDINFW 159
            ++S  +  +  +    + FG +D  V NAGV     P    ++Y    K    + ++  
Sbjct: 90  CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNK---IISVDLN 146

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVEFG 216
           G  Y ++       K  KG +I+ +S +G +   P   + YN +KAA   L ++L +E+ 
Sbjct: 147 GVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWA 206

Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
               +  ++PG I+++IT              ++++     L P+       +E     +
Sbjct: 207 PFARVNTISPGYIDTDITDF----------ASKDMKAKWWQLTPLGREGLT-QELVGGYL 255

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score =  137 bits (348), Expect = 3e-39
 Identities = 55/203 (27%), Positives = 78/203 (38%), Gaps = 16/203 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AG++ L+TG S GIG+ +A       AR+ + AR      + A +    G     AIP
Sbjct: 26  SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGD--CQAIP 83

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDI--TKPAPAMDIN---- 157
           AD+S     +       E   RLD LV NAG       E Y      K    M +N    
Sbjct: 84  ADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEK---VMQLNVTSV 140

Query: 158 FWGS-AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEF 215
           F                +   ++I + S AG       ++ Y  SKAA   L   L  E 
Sbjct: 141 FSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKEL 200

Query: 216 GGDIGITI--VTPGLIESEITGG 236
            G+  I +  + PG   S +T  
Sbjct: 201 VGE-HINVNVIAPGRFPSRMTRH 222

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score =  136 bits (346), Expect = 3e-39
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GK  LITG++ GIG+  A  Y R  A + +      + R+ A  AE+  +  A A+ 
Sbjct: 5   RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA--AEIGPA--AYAVQ 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGS 161
            DV++ +     +  T+EH G LD LV NA +  +    + T     K      IN  G+
Sbjct: 61  MDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEK---LFAINVAGT 117

Query: 162 AYGTYFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
            +    A    + Q   GKII +AS AG      ++ Y A+KAA I+L ++  ++     
Sbjct: 118 LFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKH- 176

Query: 220 GITI--VTPGLIESEIT 234
            I +  + PG+++ E  
Sbjct: 177 RINVNAIAPGVVDGEHW 193

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276

 Score =  137 bits (347), Expect = 4e-39
 Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK  LITGAS+GIGK +A  YA   A++ + AR    L+ VAD+   +G   AL I 
Sbjct: 29  DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK-ALPIR 87

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINF 158
            DV++ +  +  +D      G +D  V NAG+V +    D        I       D N 
Sbjct: 88  CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRI------QDTNV 141

Query: 159 WGSAYGT-YFAIPYLKQ-TKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVE 214
            G        A   + Q   G II  AS +G +   P ++S Y  SKAA + L + + VE
Sbjct: 142 TGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVE 201

Query: 215 FGGDIGITI--VTPGLIESEIT 234
                 I +  V+PG I +E+ 
Sbjct: 202 LAPH-QIRVNSVSPGYIRTELV 222

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266

 Score =  136 bits (346), Expect = 4e-39
 Identities = 54/241 (22%), Positives = 87/241 (36%), Gaps = 35/241 (14%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
              GKV L+TGA+ GIG  +        AR+ +  R    +               L +P
Sbjct: 25  GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA------------DLHLP 72

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINF 158
            D+ +               GRLD +V NAGV+      + TD            + +N 
Sbjct: 73  GDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLS------LGVNV 126

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                    AIP       G I+ VAS  G  P P  + Y  +KAA  +L + + ++   
Sbjct: 127 EAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAP 186

Query: 218 DIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
             GI I  V P  + + +    F  +    +            +P+    +P E+ A  +
Sbjct: 187 Q-GIRINAVCPNEVNTPMLRTGFAKRGFDPD---RAVAELGRTVPLGRIAEP-EDIADVV 241

Query: 272 V 272
           +
Sbjct: 242 L 242

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253

 Score =  136 bits (345), Expect = 4e-39
 Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 36/241 (14%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KV ++TG+  GIG+  A   AR  A +V+          VA Q    G   A+++  DV
Sbjct: 9   NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGT-AISVAVDV 67

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC---LF-----EDYTDITKPAPAMDINF 158
           S  E  K   D T+  FG +D+LV NA +              E Y         M +N 
Sbjct: 68  SDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKF------MSVNL 121

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G+ + T        K+  G I+  +S A WL      +Y  +K     L + L  E GG
Sbjct: 122 DGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSN---YYGLAKVGINGLTQQLSRELGG 178

Query: 218 DIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
              I I  + PG I++E                +E+ D  +  LP+     P ++     
Sbjct: 179 R-NIRINAIAPGPIDTEANRTT---------TPKEMVDDIVKGLPLSRMGTP-DDLVGMC 227

Query: 272 V 272
           +
Sbjct: 228 L 228

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score =  136 bits (344), Expect = 5e-39
 Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 26/239 (10%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKV +ITG + GIG  +A ++    A++++  R      + A                
Sbjct: 4   LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQ--IQFFQH 61

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           D S  +      D T + FG +  LV NAG+      E+ T  +  K    + +N  G  
Sbjct: 62  DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRK---LLAVNLDGVF 118

Query: 163 YGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDI 219
           +GT   I  +K       II ++S  G++  P +  YNASK A   + ++  ++    D 
Sbjct: 119 FGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDY 178

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            + +  V PG I++ +                E    Q +  P+    +P  + A   V
Sbjct: 179 DVRVNTVHPGYIKTPLVDD---------LPGAEEAMSQRTKTPMGHIGEP-NDIAYICV 227

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score =  135 bits (343), Expect = 8e-39
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K +L+ G S  +G  +   +  +    + +  RE    +              +     
Sbjct: 22  SKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH-------------SFTIKD 68

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYT--DITKPAPAMDINFWGSAY 163
           S  E+ K  ++       ++D  V  AG         D     +      +D+N + +  
Sbjct: 69  SGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKG---MIDMNLYSAFA 125

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI-GIT 222
             +     L Q  G  ++  ++A       M  Y A+KAA   + + L  E GG   G T
Sbjct: 126 SAHIGAKLLNQ-GGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGST 184

Query: 223 I--VTPGLIESEIT 234
              + P  +++   
Sbjct: 185 SLGILPVTLDTPTN 198

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score =  135 bits (343), Expect = 1e-38
 Identities = 52/239 (21%), Positives = 86/239 (35%), Gaps = 30/239 (12%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPAD 105
            K  L+TG+S G+GK  A   A     +V+  AR ++   E A++ E +G    L + A+
Sbjct: 4   NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVK-VLVVKAN 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           V +    K       E FGRLD  V NA    +          +         M+IN   
Sbjct: 63  VGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWT------MNINAKA 116

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
             +    A     K   G I+ ++S          +    SKAA  AL   L VE     
Sbjct: 117 LLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPK- 175

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            I +  V+ G I+++                +++ +      P     +  ++    + 
Sbjct: 176 QIIVNAVSGGAIDTDAL--------KHFPNREDLLEDARQNTPAGRMVEI-KDMVDTVE 225

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254

 Score =  135 bits (342), Expect = 1e-38
 Identities = 67/241 (27%), Positives = 97/241 (40%), Gaps = 33/241 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK V+ITG + G+G   A +     AR+VL    + +    A   EL  +  A    
Sbjct: 2   DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA--RELGDA--ARYQH 57

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            DV+  ED +  V    E FG +D LV NAG+      E  +            ++IN  
Sbjct: 58  LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKV-----VEINLT 112

Query: 160 GSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           G   G    IP       G I+ ++SAAG +     S Y ASK     L +   VE G D
Sbjct: 113 GVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTD 172

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-----QPTEECAKAI 271
             I +  V PG+  + +T           E      +      P+     +P  E A A+
Sbjct: 173 -RIRVNSVHPGMTYTPMTA----------ETGIRQGEGNYPNTPMGRVGNEP-GEIAGAV 220

Query: 272 V 272
           V
Sbjct: 221 V 221

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score =  135 bits (343), Expect = 1e-38
 Identities = 50/241 (20%), Positives = 92/241 (38%), Gaps = 19/241 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAI 102
            + GK+ ++T  SSG+G   A E AR  ARL+L +R   +L   A + A L+       +
Sbjct: 4   GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD---ITKPAPAMDINFW 159
             D+ +  D     +      G  D LV + G      F +            +  +   
Sbjct: 64  AGDIREPGDIDRLFE-KARDLGGADILVYSTGGPRPGRFMELGVEDWDE----SYRLLAR 118

Query: 160 GSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
            + +    A   + +   G+++ + S     P   ++  N  +   I +  TL +E    
Sbjct: 119 SAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPH 178

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQE-IRDVQISLLPV----QPTEECAKAI 271
            G+T+  V P LI ++        +  +  +  E       S +P+    +P EE A  +
Sbjct: 179 -GVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKP-EELASVV 236

Query: 272 V 272
            
Sbjct: 237 A 237

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260

 Score =  135 bits (342), Expect = 2e-38
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 17/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++ G   L+TG S GIG  +  E A   A +   +R +++L +   Q    G     A  
Sbjct: 6   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK-VEASV 64

Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDIN 157
            D+S   + +  ++    HF G+L+ LV NAG+V     +DYT      I      M IN
Sbjct: 65  CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLI------MSIN 118

Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
           F  + + +  A P+L    +G ++ ++S +G L  P  + Y A+K A   L   L  E+ 
Sbjct: 119 FEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWA 178

Query: 217 GDIGITI--VTPGLIESEIT 234
            D  I +  V PG+I + + 
Sbjct: 179 KD-NIRVNGVGPGVIATSLV 197

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score =  135 bits (341), Expect = 2e-38
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 18/241 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAI 102
            + GK  L+TG+++GIGK +A       A +++  RRE  + E   +            +
Sbjct: 7   QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPV 66

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            AD+   + C+  +    E + ++D L+ N G+     + D  D        ++N     
Sbjct: 67  VADLGTEQGCQDVI----EKYPKVDILINNLGIFEPVEYFDIPD-EDWFKLFEVNIMSGV 121

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             T   +   +++ +G++I +AS A  +P   M+ Y+A+K  +++L  +L     G   +
Sbjct: 122 RLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGT-NV 180

Query: 222 TI--VTPGLIESEITGG--KFLNKNGKLEVDQEIRDVQISLLPVQP------TEECAKAI 271
           T+  + PG   +E        L  N +L +++  +       P          EE A  +
Sbjct: 181 TVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLV 240

Query: 272 V 272
            
Sbjct: 241 T 241

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score =  135 bits (341), Expect = 3e-38
 Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 21/240 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGASSG G+ +A         ++  ARR   L ++           A AI  DV+
Sbjct: 6   KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY----PDRAEAISLDVT 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD--ITKPAPAMDINFWGSAYGT 165
             E         +  +GR+D LV NAG   +  FE+ T+  +       +++ +G A  T
Sbjct: 62  DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRD---LFELHVFGPARLT 118

Query: 166 YFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FGGDIGI 221
              +P + ++  G ++ ++S  G L     S Y+A+KAA   L E L  E   FG  I +
Sbjct: 119 RALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFG--IKV 176

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----PVQP--TEECAKAIVNSA 275
            IV PG   + + G      + +     E       L+      QP    + A AI  + 
Sbjct: 177 LIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLAL 236

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score =  134 bits (339), Expect = 3e-38
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 11/193 (5%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGA  GIGK +A    +    + +    +   + VA +    G   A+A+  DVS
Sbjct: 3   KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH-AVAVKVDVS 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYGT 165
             +     V+   +  G  D +V NAGV P    E  T   + K     +IN  G  +G 
Sbjct: 62  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDK---VYNINVKGVIWGI 118

Query: 166 YFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
             A+    K+   GKII   S AG +  P ++ Y++SK A   L +T   +     GIT+
Sbjct: 119 QAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPL-GITV 177

Query: 224 --VTPGLIESEIT 234
               PG++++ + 
Sbjct: 178 NGYCPGIVKTPMW 190

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score =  133 bits (338), Expect = 4e-38
 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 18/197 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             K+ +ITG ++GIG+ +A  +A   A + +         E       +G    L +  D
Sbjct: 6   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRR-VLTVKCD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           VS+  D + F    +  FGR D LV NAG+ P+  F     E +          +IN   
Sbjct: 63  VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKT------FEINVDS 116

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
                   +P   +   G+II + S   WL     + Y ++KAA I     L  + G D 
Sbjct: 117 GFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKD- 175

Query: 220 GITI--VTPGLIESEIT 234
           GIT+  + P L+ +  T
Sbjct: 176 GITVNAIAPSLVRTATT 192

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score =  133 bits (337), Expect = 8e-38
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV--ARRERQLREVADQAELMGSPFALAIPA 104
            KV ++TG + GIG+ ++ + A     + +    ++E Q  E     E      A+ +  
Sbjct: 2   SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQK-AVFVGL 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           DV+   +    +D   E  G  D LV NAG+  +    + T  D+ +      +N +   
Sbjct: 61  DVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQ---IYSVNVFSVF 117

Query: 163 YGTYFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
           +G   A     +   KGKII  AS A     P +S Y+ +K A   L +    E     G
Sbjct: 118 FGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPK-G 176

Query: 221 ITI--VTPGLIESEIT 234
            T+    PG++ + + 
Sbjct: 177 HTVNAYAPGIVGTGMW 192

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263

 Score =  133 bits (336), Expect = 1e-37
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 20/200 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++G+  ++TG S GIG  +A    +  A + +        + V   A L       A+ 
Sbjct: 9   DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVV--AGLENG--GFAVE 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DV+K       +   ++  G  D L  NAGV  M        E++          D+N 
Sbjct: 65  VDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFN------FDVNA 118

Query: 159 WGSAYGTYFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
            G       A  + L   TKG I+  AS A  +  P ++ Y+ASK A     + L  E  
Sbjct: 119 RGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMA 178

Query: 217 GDIGITI--VTPGLIESEIT 234
               I +  V PG +++ + 
Sbjct: 179 PK-NIRVNCVCPGFVKTAMQ 197

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259

 Score =  132 bits (335), Expect = 1e-37
 Identities = 49/242 (20%), Positives = 88/242 (36%), Gaps = 24/242 (9%)

Query: 40  INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPF 98
           ++ +    + +++ GA   IG+  A  +A+  A +VL              + E +G   
Sbjct: 1   MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRS- 59

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT--DITKPAPAMD 155
           ALAI AD++   + +  +    + FG +  LV  AG +       +       +    +D
Sbjct: 60  ALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQ---VLD 116

Query: 156 INFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-PPPRMSFYNASKAAKIALYETLRVE 214
           +N          A+P + +  G I+  +S AG     P    Y  SK A +     L  E
Sbjct: 117 VNLTSLFLTAKTALPKMAK-GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKE 175

Query: 215 FGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
            G  I +  V PG+I +                  E+R+       +       E+ A  
Sbjct: 176 VGPKIRVNAVCPGMISTTFHDTFT---------KPEVRERVAGATSLKREGSS-EDVAGL 225

Query: 271 IV 272
           + 
Sbjct: 226 VA 227

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score =  131 bits (333), Expect = 2e-37
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 32/237 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            ++   +LITGAS  +G H A        R+++  R E        +    G   A+A+ 
Sbjct: 24  TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAG---AVALY 77

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFWG 160
            D S       F+D+       L  +V NA       +   T   +         ++   
Sbjct: 78  GDFSCETGIMAFIDLLKTQTSSLRAVVHNASE-----WLAETPGEEADNFTRMFSVHMLA 132

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
                    P L       I+ ++         +   Y A+KA   +L  +    F   +
Sbjct: 133 PYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPLV 192

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            +  + P L+  +               D   R   ++   +       E   +++ 
Sbjct: 193 KVNGIAPALLMFQPKD------------DAAYRANALAKSALGIEPGA-EVIYQSLR 236

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260

 Score =  131 bits (333), Expect = 3e-37
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 21/240 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            G+V ++TGAS GIG+ +A +  +  A + +  R    LR VA +A+ +G    + +  D
Sbjct: 4   NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGG-QCVPVVCD 62

Query: 106 VSKVEDCKHFVD-VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFW----- 159
            S+  + +   + V  E  GRLD LV NA      +        K       + W     
Sbjct: 63  SSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTR---NKAFWETPASMWDDINN 119

Query: 160 ----GSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
               G  + + +    +    +G I+V++S    L       Y   KAA   L      E
Sbjct: 120 VGLRGHYFCSVYGARLMVPAGQGLIVVISSPGS-LQYMFNVPYGVGKAACDKLAADCAHE 178

Query: 215 FGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
                G++   + PG++++E+       +  ++  D  ++  + +    + TE   K +V
Sbjct: 179 LRRH-GVSCVSLWPGIVQTELLKEHMAKE--EVLQDPVLKQFKSAFSSAETTELSGKCVV 235

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277

 Score =  132 bits (334), Expect = 3e-37
 Identities = 63/254 (24%), Positives = 93/254 (36%), Gaps = 35/254 (13%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV-------------ARRERQLREVADQA 91
           + G+V  ITGA+ G G+  A   A   A ++ V                   L E     
Sbjct: 9   LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTD 146
           E       +A   D    +  +  VD  +   GRLD +V NAGV     +     ED+ D
Sbjct: 69  EAANRR-IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRD 127

Query: 147 ITKPAPAMDINFWGSAYGTYFAIPYLK--QTKGKIIVVASAAGWLPPPRMSFYNASKAAK 204
           +      MDIN  G+        P +      G II+++SAAG    P M  Y ASK A 
Sbjct: 128 V------MDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAV 181

Query: 205 IALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-- 260
             L      E G    I +  V PG + + +  G  +   G+           ++     
Sbjct: 182 TGLARAFAAELGKH-SIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPD 240

Query: 261 --VQPTEECAKAIV 272
              +P E+ A  + 
Sbjct: 241 WVAEP-EDIADTVC 253

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score =  130 bits (329), Expect = 1e-36
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 39  TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVL---VARRERQLREVADQAELMG 95
                D+  KV++I G    +G   A  +A     LVL    A+      ++ D+ E  G
Sbjct: 3   LTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG 62

Query: 96  SPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPA 151
           +       +D+S  E+     D   + FG++D  +   G V      + +    D     
Sbjct: 63  AK-VALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAM--- 118

Query: 152 PAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
               IN   + +    A  ++    G II +A++         S Y  +KA         
Sbjct: 119 --DTINNKVAYFFIKQAAKHMNP-NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAA 175

Query: 212 RVEFGGDIGITI--VTPGLIESEIT 234
             E      I++  + PG +++   
Sbjct: 176 SKELMKQ-QISVNAIAPGPMDTSFF 199

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score =  129 bits (328), Expect = 1e-36
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 20/193 (10%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK 108
           +VL+TGA++G G+ +   + ++  +++   RR+ +L+E+    EL  +        DV  
Sbjct: 2   IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK--DELGDN--LYIAQLDVRN 57

Query: 109 VEDCKHFVDVTMEHFGRLDHLVTNAGV------VPMCLFEDYTDITKPAPAM-DINFWGS 161
               +  +      +  +D LV NAG+            ED+         M D N  G 
Sbjct: 58  RAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWE-------TMIDTNNKGL 110

Query: 162 AYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
            Y T   +P + +   G II + S AG  P    + Y A+KA        LR +  G  +
Sbjct: 111 VYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAV 170

Query: 220 GITIVTPGLIESE 232
            +T + PGL+   
Sbjct: 171 RVTDIEPGLVGGT 183

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260

 Score =  129 bits (328), Expect = 1e-36
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
           + GKV L++G + G+G           A++V     + + + +A  AEL  +  A  +  
Sbjct: 5   LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA--AELADA--ARYVHL 60

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWG 160
           DV++    K  VD  +  FG L  LV NAG++ +   EDY             +D+N  G
Sbjct: 61  DVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRI-----LDVNLTG 115

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
              G    +  + +  +G II ++S  G         Y A+K A   L ++  +E G   
Sbjct: 116 VFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPS- 174

Query: 220 GITI--VTPGLIESEIT 234
           GI +  + PGL+++ +T
Sbjct: 175 GIRVNSIHPGLVKTPMT 191

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266

 Score =  129 bits (328), Expect = 2e-36
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 17/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  K VL+TG + GIG  +  E+A   A +   AR E +L E   + +  G        
Sbjct: 11  SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ-VTGSV 69

Query: 104 ADVSKVEDCKHFVDVTMEHFG-RLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDIN 157
            D S   + +  +      FG +LD L+ N G +          ED++        +  N
Sbjct: 70  CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFH------ISTN 123

Query: 158 FWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              + + +  A P L     G II ++S AG +     S Y+A+K A   L   L  E+ 
Sbjct: 124 LESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWA 183

Query: 217 GDIGITI--VTPGLIESEIT 234
            D GI    V P +I + + 
Sbjct: 184 SD-GIRANAVAPAVIATPLA 202

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258

 Score =  129 bits (327), Expect = 2e-36
 Identities = 66/250 (26%), Positives = 99/250 (39%), Gaps = 39/250 (15%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALA 101
            D+ GK VLITG+S GIG   A  +AR  A++ L  R+    + E        G   A  
Sbjct: 3   PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGD-AAF 61

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV-VPMCLF-----EDYTDITKPAPAMD 155
             AD++  E C+  VD  +  FG +D L+ NAG  V            Y  +      MD
Sbjct: 62  FAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAV------MD 115

Query: 156 INFWGSAYGTYFAIPYL------KQTKGKIIVVASAAGWL-PPPRMSFYNASKAAKIALY 208
            N       T FA+P+L            +I   S AG     P    Y A+KA    ++
Sbjct: 116 ANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVH 175

Query: 209 ETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----Q 262
           +        D G+    V+PG +++              +  Q++RD   + +P+     
Sbjct: 176 KNWVDFHTKD-GVRFNIVSPGTVDTAFHA----------DKTQDVRDRISNGIPMGRFGT 224

Query: 263 PTEECAKAIV 272
             EE A A +
Sbjct: 225 A-EEMAPAFL 233

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278

 Score =  129 bits (326), Expect = 4e-36
 Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 26/240 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             KV +ITG + GIG+  A  + R  A++V+    +   ++V     +        +  D
Sbjct: 15  QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC--NNIGSPDVISFVHCD 72

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDINFWG 160
           V+K ED ++ VD T+   G+LD +  N GV+          I +         MDIN +G
Sbjct: 73  VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLS----TTPYSILEAGNEDFKRVMDINVYG 128

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGGD 218
           +      A    +   KG I+  AS + +     +S  Y A+K A + L  +L  E G  
Sbjct: 129 AFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEY 188

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            GI +  V+P ++ S +    F      ++  +       +        +  E+ A A+ 
Sbjct: 189 -GIRVNCVSPYIVASPLLTDVF-----GVDSSRVEELAHQAANLKGTLLRA-EDVADAVA 241

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244

 Score =  128 bits (324), Expect = 5e-36
 Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 37/241 (15%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL-REVADQAELMGSPFALAIPADV 106
            + L+T A    G        +    +V               ++E  G           
Sbjct: 2   VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPG--------TIA 53

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF--------EDYTDITKPAPAMDINF 158
              +  +  VD T++H   +D +V+N  +               D   +       +   
Sbjct: 54  LAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQM------FEALS 107

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                    AI          +I + S+ G  P      Y  ++AA +AL E+       
Sbjct: 108 IFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSR 167

Query: 218 DIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
           D GI +  + P    +              E + E+R+     +P+    +P +E    I
Sbjct: 168 D-GILLYAIGPNFFNNPTY-----FPTSDWENNPELRERVDRDVPLGRLGRP-DEMGALI 220

Query: 272 V 272
            
Sbjct: 221 T 221

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250

 Score =  128 bits (323), Expect = 8e-36
 Identities = 55/241 (22%), Positives = 96/241 (39%), Gaps = 31/241 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D +GK V +TGA  GIG   A  +    A++    +   Q +                  
Sbjct: 4   DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPF-----------ATEV 52

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DV+            +    RLD LV  AG++ M        ED+           +N 
Sbjct: 53  MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQT------FAVNV 106

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G+       +    +Q  G I+ VAS A   P   MS Y ASKAA  +L  ++ +E  G
Sbjct: 107 GGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAG 166

Query: 218 DIGIT--IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
             G+   +V+PG  ++++    +++ + + +  +   +     +P+    +P +E A  I
Sbjct: 167 S-GVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARP-QEIANTI 224

Query: 272 V 272
           +
Sbjct: 225 L 225

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299

 Score =  128 bits (325), Expect = 1e-35
 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 40/259 (15%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV------------ARRERQLREVADQAE 92
           V GKV  ITGA+ G G+  A   AR  A ++ +                  L E   Q E
Sbjct: 26  VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE 85

Query: 93  LMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF------EDYTD 146
            +G    +A   DV   +  +  VD  +   GRLD ++ NA +            + + D
Sbjct: 86  ALGRR-IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRD 144

Query: 147 ITKPAPAMDINFWGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAK 204
           +      +D+N  G+      AIP++   +  G I+  +S  G      +  Y ASK   
Sbjct: 145 M------IDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGL 198

Query: 205 IALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEV------DQEIRDVQI 256
             L  T+ +E G    I +  V P  + + +   +   +  + ++      D ++   Q+
Sbjct: 199 HGLMRTMALELGPR-NIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQM 257

Query: 257 SLLPV---QPTEECAKAIV 272
            +LP+   +P  + + AI+
Sbjct: 258 HVLPIPYVEP-ADISNAIL 275

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281

 Score =  128 bits (323), Expect = 1e-35
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAI 102
            +  K  +ITG++SGIG  +A   A+  A +VL       ++R V D+   + S   L  
Sbjct: 22  SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
           PAD++K  +    + +  + FG  D LV NAGV  +   ED+    +    + +N   S 
Sbjct: 82  PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPV-EQWDRIIAVNLSSSF 140

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
           +    AIP   K+  G+II +ASA G +  P  S Y A+K   + L +T+ +E     G+
Sbjct: 141 HTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAES-GV 199

Query: 222 TI--VTPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLP----VQPTEECAKAIV 272
           T+  + PG + + +   +     +   +  +Q I +V +   P    +   E+ A   +
Sbjct: 200 TVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITV-EQVASLAL 257

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score =  127 bits (322), Expect = 2e-35
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 19/239 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
            GKV L+TG+  GIG  +A    R  A++V+  A   +   +V  + + +GS  A+AI A
Sbjct: 17  DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSD-AIAIKA 75

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           D+ +V +     D  + HFG LD  V+N+GVV     +D T  +  +      +N  G  
Sbjct: 76  DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDR---VFSLNTRGQF 132

Query: 163 YGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
           +    A  +L +  G+I++ +S  +     P+ S Y+ SK A  +       + G    I
Sbjct: 133 FVAREAYRHLTE-GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDK-KI 190

Query: 222 TI--VTPGLIESEIT--GGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           T+  V PG   +++          NG     ++ + +     P+     P ++ A  + 
Sbjct: 191 TVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWP-QDVANVVG 248

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280

 Score =  127 bits (322), Expect = 2e-35
 Identities = 62/253 (24%), Positives = 96/253 (37%), Gaps = 34/253 (13%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV-------------ARRERQLREVADQA 91
           + G+V  ITGA+ G G+  A   A   A ++                     L E A   
Sbjct: 13  LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLV 72

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTD 146
           E  G   AL    DV      +  V   ME FGRLD +V NAGV+          E +  
Sbjct: 73  EDQGRK-ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDT 131

Query: 147 ITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAK 204
           +      + +N  G+       +P + +    G I+VV+S+AG    P    Y+ASK   
Sbjct: 132 V------IGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGL 185

Query: 205 IALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV- 261
            AL  TL +E G   GI +  + P  +E+ +   + + +              + + P  
Sbjct: 186 TALTNTLAIELGEY-GIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNG 244

Query: 262 --QPTEECAKAIV 272
                +E A  + 
Sbjct: 245 FMTA-DEVADVVA 256

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260

 Score =  126 bits (320), Expect = 2e-35
 Identities = 63/243 (25%), Positives = 95/243 (39%), Gaps = 45/243 (18%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
               KVV+ITGAS GIG  L   Y  R  R+V  +R  +   +               + 
Sbjct: 25  RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPD----------IHTVA 74

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            D+SK E     V   +E FGR+D LV NAGV     F     EDY         + +N 
Sbjct: 75  GDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHN------LGVNV 128

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMS--FYNASKAAKIALYETLRVEF 215
            G  + T  A    LKQ  G I+ + ++    P   M     + +K    A+  +L +EF
Sbjct: 129 AGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEF 188

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
               G+ +  V+PG+I++ +                E       L PV    +   +   
Sbjct: 189 SRS-GVRVNAVSPGVIKTPMH-------------PAETHSTLAGLHPVGRMGEI-RDVVD 233

Query: 270 AIV 272
           A++
Sbjct: 234 AVL 236

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246

 Score =  126 bits (318), Expect = 3e-35
 Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 33/239 (13%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV+++T A+ GIG+  A  +AR  A+++     E +L+E+                 D
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPG------IQTRVLD 58

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWGS 161
           V+K +    F         RLD L   AG V      D      D +     M++N    
Sbjct: 59  VTKKKQIDQFA----NEVERLDVLFNVAGFVHHGTVLDCEEKDWDFS-----MNLNVRSM 109

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGGDI 219
                  +P  L Q  G II ++S A  +        Y+ +KAA I L +++  +F    
Sbjct: 110 YLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQ- 168

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           GI    V PG +++     + +   G     +E R+  +            EE A   V
Sbjct: 169 GIRCNCVCPGTVDTPSL-QERIQARGN---PEEARNDFLKRQKTGRFATA-EEIAMLCV 222

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272

 Score =  126 bits (320), Expect = 3e-35
 Identities = 68/241 (28%), Positives = 98/241 (40%), Gaps = 30/241 (12%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPAD 105
             VVL+TG S GIG  +    AR+  R+ +  A        V       G   A+AIP D
Sbjct: 26  TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGE-AVAIPGD 84

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV-PMCLFEDYT--DITKPAPAMDINFWGSA 162
           V    D           FGRLD LV NAG+V      ++ +   I +    + +N  GS 
Sbjct: 85  VGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIER---MLRVNVTGSI 141

Query: 163 YGTYFAIPYLKQTK----GKIIVVASAAGWL-PPPRMSFYNASKAAKIALYETLRVEFGG 217
                A+  + +      G I+ V+S A  L    +   Y ASKAA       L  E   
Sbjct: 142 LCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVAA 201

Query: 218 DIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAI 271
           + GI +  V PG+IE+++        +G L    +        +P+     P EE A AI
Sbjct: 202 E-GIRVNAVRPGIIETDLH------ASGGLP---DRAREMAPSVPMQRAGMP-EEVADAI 250

Query: 272 V 272
           +
Sbjct: 251 L 251

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267

 Score =  126 bits (319), Expect = 4e-35
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 32/244 (13%)

Query: 44  DVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFAL 100
            + GKVV++TGAS   G+G   A   A   A + +  A R +   E   + E      A 
Sbjct: 17  SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMD 155
           A    V   E C+  V   +  FG++D  + NAG        D +      +      + 
Sbjct: 77  AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHV------VQ 130

Query: 156 INFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLR 212
           ++  G+ +       +  ++  G +++ AS +G +   P   + YN +KA  I +  +L 
Sbjct: 131 VDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLA 190

Query: 213 VEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECA 268
            E+     +  ++PG I++ ++            V +E + +  S++P+       +E  
Sbjct: 191 NEWRDFARVNSISPGYIDTGLSDF----------VPKETQQLWHSMIPMGRDGLA-KELK 239

Query: 269 KAIV 272
            A V
Sbjct: 240 GAYV 243

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score =  126 bits (319), Expect = 5e-35
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
           AGKV L TGA  GIG+ +A E  RR A +V+      +   EV  + + +G+   +AI A
Sbjct: 20  AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQ-GVAIQA 78

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFWG 160
           D+SK  +     D  + HFG LD +++N+G+   C   + T    D        ++N  G
Sbjct: 79  DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKV-----FNLNTRG 133

Query: 161 SAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGGDI 219
             +     + + ++  G+II+ +S A  +   P  + Y  SKAA         V+ G   
Sbjct: 134 QFFVAQQGLKHCRR-GGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAK- 191

Query: 220 GITI--VTPGLIESEIT---GGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKA 270
           G+T+  + PG +++++       +     K    ++I +   ++ P+     P  +  +A
Sbjct: 192 GVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYP-ADIGRA 250

Query: 271 IV 272
           + 
Sbjct: 251 VS 252

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285

 Score =  126 bits (319), Expect = 5e-35
 Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 20/198 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQAELMGS 96
            + GK + I+G S GIG  +A   A   A + LVA+           +   A + E  G 
Sbjct: 6   SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAP 152
             AL I  D+   +     V  T+E FG +D  V NA  + +   E+      D+     
Sbjct: 66  Q-ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLM---- 120

Query: 153 AMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYET 210
              I   G+   +   IP++  +    I+ ++      P   R + Y  +K         
Sbjct: 121 -NGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALG 179

Query: 211 LRVEFGGD-IGITIVTPG 227
           +  E     I    + P 
Sbjct: 180 IAEELRDAGIASNTLWPR 197

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286

 Score =  126 bits (319), Expect = 6e-35
 Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 42/262 (16%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV----------------ARRERQLREVA 88
           V GKV  +TGA+ G G+  A   A+  A ++ V                A     L E A
Sbjct: 9   VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETA 68

Query: 89  DQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF------E 142
           D  +       +    DV   +  K  VD  +E  GRLD +V NAG+            E
Sbjct: 69  DLVKGHNRR-IVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEE 127

Query: 143 DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNAS 200
           D+T++      +DIN  G        +P++      G II+ +S  G    P    Y A+
Sbjct: 128 DWTEM------IDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAA 181

Query: 201 KAAKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL 258
           K   + L     VE G    I +  V P  +++ +   +   K  + +++    D    +
Sbjct: 182 KHGVVGLMRAFGVELGQH-MIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPI 240

Query: 259 LPVQPT--------EECAKAIV 272
             +  T         + + A++
Sbjct: 241 CQMFHTLPIPWVEPIDISNAVL 262

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278

 Score =  126 bits (318), Expect = 7e-35
 Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 34/253 (13%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV------------ARRERQLREVADQAE 92
           + GKV  ITGA+ G G+  A   A   A ++ V                 +L       E
Sbjct: 11  LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE 70

Query: 93  LMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL-FEDYTDITKPA 151
            +GS   +A  ADV   E     +   ++  GRLD +V NAG+ PM    + + D+    
Sbjct: 71  DIGSR-IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDV---- 125

Query: 152 PAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAG----WLPPPRMSFYNASKAAKI 205
             +D+N  G  +    AIP L +    G I++++S+AG        P    Y A+K   +
Sbjct: 126 --IDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVV 183

Query: 206 ALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKN-GKLEVDQEIRDVQISLLPV- 261
            L         G   I +  + P  +E+ +   +F  +   K+    +      + +PV 
Sbjct: 184 GLMRVYANLLAGQ-MIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVE 242

Query: 262 --QPTEECAKAIV 272
              P E+ A A+ 
Sbjct: 243 VLAP-EDVANAVA 254

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score =  125 bits (317), Expect = 7e-35
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ G+ V++TG + GIG+ +A  +AR  A + +  R    +       + +GS   + + 
Sbjct: 7   DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DVS    C       +E FG +D +  NAGV P         E    I        +N 
Sbjct: 67  TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGI------FAVNV 120

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFG 216
            G+ Y     +   +    G++++ +S  G +   P  S Y A+KAA++    T  +E  
Sbjct: 121 NGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQLGFMRTAAIELA 180

Query: 217 GDIGITI--VTPGLIESEIT 234
               IT+  + PG I +E  
Sbjct: 181 PH-KITVNAIMPGNIMTEGL 199

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265

 Score =  125 bits (316), Expect = 1e-34
 Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 52/256 (20%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAI 102
               K +++TG + GIG       A   A + ++ R     +       +  G     A 
Sbjct: 11  SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK-TKAY 69

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-------- 154
             DVS  +     +       G +  L+ NAG            ++   PA         
Sbjct: 70  QCDVSNTDIVTKTIQQIDADLGPISGLIANAG------------VSVVKPATELTHEDFA 117

Query: 155 ---DINFWGSAYGTYFAIPYL--KQTKGKIIVVASAAG-------WLPPPRMSFYNASKA 202
              D+N +G              KQ KG I+V +S +                FYN+SKA
Sbjct: 118 FVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKA 177

Query: 203 AKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP 260
           A   L + L  E+    GI +  ++PG + ++ T            +D++IRD Q S +P
Sbjct: 178 ACSNLVKGLAAEWASA-GIRVNALSPGYVNTDQTA----------HMDKKIRDHQASNIP 226

Query: 261 V----QPTEECAKAIV 272
           +    QP EE     +
Sbjct: 227 LNRFAQP-EEMTGQAI 241

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score =  126 bits (318), Expect = 2e-34
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 14/199 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARR-----ERQLREVADQAELMGSPFALA 101
            K++LITGASSG G+  A   A    R+    R         +  +A  A          
Sbjct: 5   KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDL-RT 63

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           +  DV         +D  +   GR+D L+ NAG +     E +T   + A   DIN   +
Sbjct: 64  LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTP-EQFAELYDINVLST 122

Query: 162 AYGTYFAIPYL-KQTKGKIIVVASAAGWLP-PPRMSFYNASKAAKIALYETLRVE---FG 216
                 A+P++ +Q  G +I ++S++     PP ++ Y A+KAA  A+      E   +G
Sbjct: 123 QRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWG 182

Query: 217 GDIGITIVTPGLIESEITG 235
             I  +I+ PG   S    
Sbjct: 183 --IETSIIVPGAFTSGTNH 199

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254

 Score =  124 bits (314), Expect = 2e-34
 Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 29/205 (14%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G    +TGA SGIG  +   +A   ARL+L+ R    L   A   EL  +  A  I 
Sbjct: 8   RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA--QELGAA-VAARIV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDIN- 157
           ADV+  E          E    +  LV +AG+  +    +  D     +      M +N 
Sbjct: 65  ADVTDAEAMTAAAA-EAEAVAPVSILVNSAGIARLHDALETDDATWRQV------MAVNV 117

Query: 158 ---FWGS-AYGTYFAIPYLKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETL 211
              FW S A+G       + +  G I+ + S +G +   P   S Y ASK A   L   L
Sbjct: 118 DGMFWASRAFGRAM----VARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRAL 173

Query: 212 RVEFGGDIGITI--VTPGLIESEIT 234
             E+ G  G+ +  + PG + +E+T
Sbjct: 174 AAEWAGR-GVRVNALAPGYVATEMT 197

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244

 Score =  123 bits (312), Expect = 2e-34
 Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 23/199 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AG+ VL+TGA  GIG+          AR+V V+R +  L  +  +      P    + 
Sbjct: 4   FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVC 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            D+   E      +  +   G +D LV NA V  +  F + T    D +      ++N  
Sbjct: 59  VDLGDWEA----TERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRS-----FEVNLR 109

Query: 160 GSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                +      L  +   G I+ V+S          S Y ++K A   L + + +E G 
Sbjct: 110 AVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGP 169

Query: 218 DIGITI--VTPGLIESEIT 234
              I +  V P ++ + + 
Sbjct: 170 H-KIRVNAVNPTVVMTSMG 187

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274

 Score =  124 bits (313), Expect = 3e-34
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 24/208 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQAELMGS 96
            ++GK + ITGAS GIG  +A   AR  A + + A+           +   A      G 
Sbjct: 3   TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAP 152
              LA+  D+ + +  +  V  T++ FG +D LV NA  + +    D      D+     
Sbjct: 63  Q-GLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLM---- 117

Query: 153 AMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSF--YNASKAAKIALYE 209
              +N  GS       +P+L +     I+ +A      P    +   Y  +K     +  
Sbjct: 118 -QQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTL 176

Query: 210 TLRVEFGGDIGITI--VTPG-LIESEIT 234
            L  EFG   G+ I  + P  +I ++  
Sbjct: 177 GLAAEFGPQ-GVAINALWPRTVIATDAI 203

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score =  123 bits (312), Expect = 4e-34
 Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
             KV ++TGAS GIG  +A   A     +V+  A +     EVA + E  G   AL   A
Sbjct: 26  TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGK-ALTAQA 84

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA---PAMDINFWGS 161
           DVS     +       E FG +D LV NAG++P+    +    T  A     + +N  G+
Sbjct: 85  DVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAE----TGDAVFDRVIAVNLKGT 140

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
                 A   L +  G+II ++++   L  P    Y A+KA   A+   L  E  G   I
Sbjct: 141 FNTLREAAQRL-RVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGR-DI 198

Query: 222 TI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           T+  V PG   ++      L   GK     E+RD    L P+     P ++ A A+ 
Sbjct: 199 TVNAVAPGPTATD------LFLEGK---SDEVRDRFAKLAPLERLGTP-QDIAGAVA 245

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244

 Score =  122 bits (310), Expect = 5e-34
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           + +G   L+TGA  GIG+          A++V V R    L  +A +      P    + 
Sbjct: 4   NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVC 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT----DITKPAPAMDINFW 159
            D+   +      +  +   G +D LV NA +V M  F + T    D +       +N  
Sbjct: 59  VDLGDWDA----TEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRS-----FSVNLR 109

Query: 160 GSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                +      +  +   G I+ V+S    +  P +  Y+++K A   L + + +E G 
Sbjct: 110 SVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGP 169

Query: 218 DIGITI--VTPGLIESEIT 234
              I +  V P ++ +++ 
Sbjct: 170 H-KIRVNSVNPTVVLTDMG 187

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score =  123 bits (312), Expect = 6e-34
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 20/240 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
            GKV L+TGA  GIG+ +A E  RR  ++++  A       EV    +  GS  A  + A
Sbjct: 28  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSD-AACVKA 86

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSA 162
           +V  VED     +  ++ FG+LD + +N+GVV     +D T  +  +      IN  G  
Sbjct: 87  NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDR---VFTINTRGQF 143

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAG-WLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
           +    A  +L+   G++I++ S  G     P+ + Y+ SK A       + ++      I
Sbjct: 144 FVAREAYKHLEI-GGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADK-KI 201

Query: 222 TI--VTPGLIESEIT---GGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           T+  V PG I++++      +++     L  ++      +   P+     P  + A+ + 
Sbjct: 202 TVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLP-IDIARVVC 260

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score =  123 bits (310), Expect = 8e-34
 Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGS 96
             + +  +AGK   +TG S GIG  +A   A   A + L       + + V  + E  G 
Sbjct: 22  SMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGG 81

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAM 154
             A+AI AD    E  +  +  T+E  G LD LV +AG+      E+ T  D  +    M
Sbjct: 82  R-AVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDE---VM 137

Query: 155 DINFWGSAYGTYFAIPYLKQTKGKIIVVASA-AGWLPPPRMSFYNASKAAKIALYETLRV 213
            +NF         A  +L    G+II + S  A  +P P +S Y+ASKAA   L + L  
Sbjct: 138 AVNFRAPFVAIRSASRHL-GDGGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLAR 196

Query: 214 EFGGDIGITI--VTPGLIESEITGG 236
           + G   GIT+  V PG  ++++   
Sbjct: 197 DLGPR-GITVNIVHPGSTDTDMNPA 220

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263

 Score =  122 bits (309), Expect = 9e-34
 Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 47/246 (19%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            ++GK +L+TGA+SGIG+     +AR  A LV V R ER L E    A L     A+A+ 
Sbjct: 3   RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV--AALEAE--AIAVV 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM--------- 154
           ADVS  +  +      +E FGRL  +   AG            +   A +          
Sbjct: 59  ADVSDPKAVEAVFAEALEEFGRLHGVAHFAG------------VAHSALSWNLPLEAWEK 106

Query: 155 --DINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
              +N  GS      A   L +  G +++  S AG L    ++ Y A K   + L  TL 
Sbjct: 107 VLRVNLTGSFLVARKAGEVL-EEGGSLVLTGSVAG-LGAFGLAHYAAGKLGVVGLARTLA 164

Query: 213 VEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEE 266
           +E     G+ +  + PGLI++ +T G          +     + ++   P+    +P EE
Sbjct: 165 LELARK-GVRVNVLLPGLIQTPMTAG----------LPPWAWEQEVGASPLGRAGRP-EE 212

Query: 267 CAKAIV 272
            A+A +
Sbjct: 213 VAQAAL 218

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260

 Score =  121 bits (307), Expect = 2e-33
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 17/239 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
            GKV ++TG++SGIG  +A   A + A +VL       ++ +V            L   A
Sbjct: 3   KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           D+SK E  +  VD  +   GR+D LV NAG+    L ED+    K    + +N     +G
Sbjct: 63  DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPT-EKWDAILALNLSAVFHG 121

Query: 165 TYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
           T  A+P+  KQ  G+II +ASA G +     S Y A+K   +   +   +E  G  GIT 
Sbjct: 122 TAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQ-GITA 180

Query: 224 --VTPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLPVQPT------EECAKAIV 272
             + PG + + +   +   L +   ++ +   R++   L   QP+      E+     V
Sbjct: 181 NAICPGWVRTPLVEKQISALAEKNGVDQETAAREL---LSEKQPSLQFVTPEQLGGTAV 236

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255

 Score =  121 bits (306), Expect = 3e-33
 Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 14/235 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  L+TG++SGIG  +A   AR  A +VL    +        +    G   A+  PAD
Sbjct: 3   KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA--PALAEIARHGVK-AVHHPAD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +S V   +    +    FG +D LV NAG+  +   E +         + +N     +GT
Sbjct: 60  LSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPL-ESWDKIIALNLSAVFHGT 118

Query: 166 YFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI- 223
             A+P    +  G+II +AS  G +     + Y A+K   + L + + +E      +T  
Sbjct: 119 RLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATS-NVTCN 177

Query: 224 -VTPGLIESEITGGKFLNKNGKLEV-DQEIRDVQISLLP----VQPTEECAKAIV 272
            + PG + + +   +  ++        Q   D+     P    V P E   + ++
Sbjct: 178 AICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTP-EHLGELVL 231

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255

 Score =  121 bits (305), Expect = 4e-33
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 17/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GK  L+TG++ G+G   A   A   AR++L   R   L E  D     G   A  + 
Sbjct: 6   DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYD-AHGVA 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINF 158
            DV+     +            +D L+ NAG+       +        +      +D N 
Sbjct: 65  FDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKV------IDTNL 118

Query: 159 WGSAYGTYFAIPYL--KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             +   +  A   +  + + GKII + S       P ++ Y A+K     L  ++  E+ 
Sbjct: 119 TSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWA 178

Query: 217 GDIGITI--VTPGLIESEIT 234
               I    + PG I +++ 
Sbjct: 179 QF-NIQTNAIGPGYILTDMN 197

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score =  121 bits (306), Expect = 5e-33
 Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 28/250 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV--ARRERQLREVADQAELMGSPFALAIP 103
             +  L+TG  SGIG+  A  YAR  A + +      E   ++V    E  G   A+ +P
Sbjct: 48  KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRK-AVLLP 106

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGS 161
            D+S     +  V    E  G LD L   AG        +  D+T         +N +  
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAI--PEIKDLTSEQFQQTFAVNVFAL 164

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            + T  AIP L +    II  +S   + P P +  Y A+KAA +     L  +     GI
Sbjct: 165 FWITQEAIPLLPK-GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEK-GI 222

Query: 222 TI--VTPGLIESE--ITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVN 273
            +  V PG I +   I+GG+           Q+         P+    QP  E A   V 
Sbjct: 223 RVNIVAPGPIWTALQISGGQ----------TQDKIPQFGQQTPMKRAGQP-AELAPVYVY 271

Query: 274 SACRGDRYLT 283
            A +   Y+T
Sbjct: 272 LASQESSYVT 281

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score =  120 bits (302), Expect = 5e-33
 Identities = 31/190 (16%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           +   V++ G    +G  +   + +    ++ +           DQA+       + +  +
Sbjct: 2   SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA------NDQADS-----NILVDGN 50

Query: 106 VSKVEDCKHFVDVT--MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            +  E  +  ++ T       ++D +   AG            +      +  + W SA 
Sbjct: 51  KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIGIT 222
               A  +LK   G + +  +AA   P P M  Y  +KAA   L  +L  +  G      
Sbjct: 111 AAKLATTHLKPG-GLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSA 169

Query: 223 I--VTPGLIE 230
           +  + P  ++
Sbjct: 170 VLTIMPVTLD 179

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score =  121 bits (305), Expect = 7e-33
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 28/206 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++ + VL+TG + GIG+ +A  +AR  A + + AR  R+L  V  +   +G+   + + 
Sbjct: 38  DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVR 97

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DVS    C       ++ FG LD +  NAG+ P         E  +++      +D+N 
Sbjct: 98  LDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEV------LDVNV 151

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASA-------AGWLPPPRMSFYNASKAAKIALYET 210
            G+ Y     +       +G++I+ +S         GW      S Y ASKAA++    T
Sbjct: 152 KGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGW------SHYGASKAAQLGFMRT 205

Query: 211 LRVEFGGDIGITI--VTPGLIESEIT 234
             +E     G+T+  + PG I +E  
Sbjct: 206 AAIELAPR-GVTVNAILPGNILTEGL 230

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276

 Score =  120 bits (303), Expect = 1e-32
 Identities = 41/213 (19%), Positives = 66/213 (30%), Gaps = 24/213 (11%)

Query: 41  NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFA 99
           + E       +ITG +  IG  +A    ++  R+V+     E   + +  +     +  A
Sbjct: 5   SHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSA 64

Query: 100 LAIPADVSKVED----CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA-- 153
           +    D+S        C+  +D +   FGR D LV NA            D    A A  
Sbjct: 65  VLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKP 124

Query: 154 --------MDINFWGSAYGTYFAIPYL------KQTKGKIIVVASAAGWLPPPRMSFYNA 199
                      N     +               +     ++ +  A   LP P    Y  
Sbjct: 125 IDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTM 184

Query: 200 SKAAKIALYETLRVEFGGDIGITI--VTPGLIE 230
           +K A   L     +E      I +  V PGL  
Sbjct: 185 AKHALGGLTRAAALELAPR-HIRVNAVAPGLSL 216

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317

 Score =  121 bits (305), Expect = 1e-32
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 29/240 (12%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV------------ARRERQLREVADQAE 92
           + GKV  ITGA+ G G+  A   A+  A +V +                 +L+E     E
Sbjct: 44  LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE 103

Query: 93  LMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDI 147
             G    +A  ADV  +   +  VD  +  FG +D LV+N G+           + ++DI
Sbjct: 104 EQGRR-IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162

Query: 148 TKPAPAMDINFWGSAYGTYFAIPYL-KQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI 205
                 +  N  G+ +     +P + ++ + G +I V+S  G    P  S Y ASK    
Sbjct: 163 ------LQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQ 216

Query: 206 ALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP 263
            L  +L  E G    I +  V PG + +E+   + L K     ++   R+    L     
Sbjct: 217 GLMLSLANEVGRH-NIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLT 275

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score =  120 bits (303), Expect = 1e-32
 Identities = 52/264 (19%), Positives = 93/264 (35%), Gaps = 45/264 (17%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLV------------ARRERQLREVADQAE 92
           V  KVVL+TG + G G+  A + A   A ++L                 R L E   + E
Sbjct: 8   VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE 67

Query: 93  LMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF---EDYTDITK 149
             G   A     DV         +   +  FG+LD +V NAG+ P+      + + D   
Sbjct: 68  KTGRK-AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADA-- 124

Query: 150 PAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-----------WLPPPRMSFYN 198
                D++F G     + A+PYL      II   S AG               P  + Y+
Sbjct: 125 ----FDVDFVGVINTVHAALPYLTS-GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYS 179

Query: 199 ASKAAKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQ-EIRDVQ 255
            +K    +    L  +      I    + P  + +++     + +  + +++     D  
Sbjct: 180 YAKQLVDSYTLQLAAQLAPQ-SIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADAL 238

Query: 256 ISLLPVQP-------TEECAKAIV 272
           ++   +Q          + + A+ 
Sbjct: 239 LAFPAMQAMPTPYVEASDISNAVC 262

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254

 Score =  119 bits (301), Expect = 1e-32
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
              ++T      G   A   +     +       +Q  E+   A                
Sbjct: 2   STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFA-------ETYPQLKPM 54

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVP-MCLF-----EDYTDITKPAPAMDINFWGS 161
             ++    ++     +G++D LV+N    P          EDY         ++      
Sbjct: 55  SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGA------VEALQIRP 108

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
                       K+  G II + SA  + P   +S Y +++A    L   L  E G    
Sbjct: 109 FALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEY-N 167

Query: 221 ITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           I +  + P  + SE +   +       + + E       +  +       +E  + + 
Sbjct: 168 IPVFAIGPNYLHSEDS--PYFYPTEPWKTNPEHVAHVKKVTALQRLGTQ-KELGELVA 222

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score =  118 bits (298), Expect = 4e-32
 Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 32/254 (12%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
            GKV L+TGAS GIG+ +A   A   A + +    R+ +  E   + +  G   A +I A
Sbjct: 6   KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGS-AFSIGA 64

Query: 105 DVSKVEDCKHFVDVTMEHF------GRLDHLVTNAGVVPMCLFEDYTDITKPA---PAMD 155
           ++  +   +                 + D L+ NAG+ P    E+    T        + 
Sbjct: 65  NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEE----TTEQFFDRMVS 120

Query: 156 INFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           +N     +    A+  L +   +II ++SAA  +  P    Y+ +K A   +  TL  + 
Sbjct: 121 VNAKAPFFIIQQALSRL-RDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQL 179

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
           G   GIT+  + PG +++++           L  D  ++    ++       +  E+ A 
Sbjct: 180 GAR-GITVNAILPGFVKTDMNAE--------LLSDPMMKQYATTISAFNRLGEV-EDIAD 229

Query: 270 AIVNSACRGDRYLT 283
                A    R++T
Sbjct: 230 TAAFLASPDSRWVT 243

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241

 Score =  117 bits (295), Expect = 5e-32
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 13/192 (6%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
           A     + VL+ G    +G      +  R   +  +   E    E A  +        + 
Sbjct: 2   AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE---NEEASASV------IVK 52

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           +    ++  D        +    ++D ++  AG       +  +           + W S
Sbjct: 53  MTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTS 112

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG-DIG 220
              ++ A  +LK+  G + +  + A     P M  Y  +K A   L ++L  +  G   G
Sbjct: 113 TISSHLATKHLKE-GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSG 171

Query: 221 ITI--VTPGLIE 230
                V P  ++
Sbjct: 172 AAAIAVLPVTLD 183

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281

 Score =  118 bits (298), Expect = 7e-32
 Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 36/257 (14%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR------------RERQLREVADQA 91
           D  GK  LITG + G+G+  A   A   A + +  R                L E     
Sbjct: 7   DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66

Query: 92  ELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTD 146
           E  G    ++   DV      + FV    +  G +D  +TNAG+  + L        + +
Sbjct: 67  EKTGRR-CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDE 125

Query: 147 ITKPAPAMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKI 205
           +      +  N  G+        P + K+  G+I+ V+S  G       + Y +SK   I
Sbjct: 126 V------IGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVI 179

Query: 206 ALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRD--------VQ 255
            L +    +  G  GIT+  V PG IE+ +T   F+    + ++++            + 
Sbjct: 180 GLTKCAAHDLVGY-GITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLH 238

Query: 256 ISLLPVQPTEECAKAIV 272
           +   P    EE  +A++
Sbjct: 239 LQYAPFLKPEEVTRAVL 255

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279

 Score =  117 bits (296), Expect = 9e-32
 Identities = 53/248 (21%), Positives = 85/248 (34%), Gaps = 36/248 (14%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             +   +TG SSGIG  +A   A R   +   AR  + +    D     G         D
Sbjct: 23  RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHD-VDGSSCD 81

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM----------- 154
           V+  ++    V   +E FG +  LV +AG                               
Sbjct: 82  VTSTDEVHAAVAAAVERFGPIGILVNSAG------------RNGGGETADLDDALWADVL 129

Query: 155 DINFWGSAYGTYFAIPY---LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
           D N  G    T   +      +   G+I+ +AS  G       + Y ASK   +   +++
Sbjct: 130 DTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSV 189

Query: 212 RVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVD-QEIRDVQISLLPV----QPT 264
             E     GIT+  V PG +E+ +             V  QE+ +   + +P+     P 
Sbjct: 190 GFELAKT-GITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTP- 247

Query: 265 EECAKAIV 272
           EE A  + 
Sbjct: 248 EEVAGLVG 255

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score =  116 bits (294), Expect = 2e-31
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 18/201 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAI 102
           D+ G+V L+TG S G+G  +A   A     +V+ +R   +  E A +  E  G    +A 
Sbjct: 18  DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE-TMAF 76

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDIN 157
             DVS  E+ K  ++   E FG+LD +V  AG+      E++       +      +++N
Sbjct: 77  RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQV------IEVN 130

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGW-LPPPRMSFYNASKAAKIALYETLRVEF 215
            +G+ Y    A     +     II + S     +  P +S Y ASK    +L + L  E+
Sbjct: 131 LFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEW 190

Query: 216 GGDIGITI--VTPGLIESEIT 234
           G   GI +  + PG   +++T
Sbjct: 191 GRY-GIRVNVIAPGWYRTKMT 210

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247

 Score =  116 bits (292), Expect = 2e-31
 Identities = 59/197 (29%), Positives = 83/197 (42%), Gaps = 20/197 (10%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
           GK  L+TGA+ GIGK +A   A   A +++        +  A     +G   A AI AD+
Sbjct: 6   GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS---IGKK-ARAIAADI 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
           S     K          G +D LV NA +VP   +     + +  I      +D+N  G+
Sbjct: 62  SDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKI------IDVNLTGT 115

Query: 162 AYGTYFAIPY-LKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
              T           K G++I +AS   +   P M+ Y A+K   I     L  E G   
Sbjct: 116 FIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKY- 174

Query: 220 GITI--VTPGLIESEIT 234
            IT   VTPGLIES+  
Sbjct: 175 NITANAVTPGLIESDGV 191

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288

 Score =  116 bits (292), Expect = 5e-31
 Identities = 40/213 (18%), Positives = 68/213 (31%), Gaps = 24/213 (11%)

Query: 41  NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFA 99
               +     ++TGA+  IG+ +A +  +   R+V+           +AD+     S  A
Sbjct: 17  RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTA 76

Query: 100 LAIPADVSKVE----DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMD 155
           +   AD++        C+  ++     FGR D LV NA                      
Sbjct: 77  VVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTV 136

Query: 156 INFWGS-----AYGTYFAI-----------PYLKQTKGKIIVVASAAGWLPPPRMSFYNA 199
                      A   +              P    +   I+ +  A    P    S YN 
Sbjct: 137 ETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYNM 196

Query: 200 SKAAKIALYETLRVEFGGDIGITI--VTPGLIE 230
            K A + L ++  +E     GI +  V PG+  
Sbjct: 197 GKHALVGLTQSAALELAPY-GIRVNGVAPGVSL 228

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280

 Score =  115 bits (290), Expect = 9e-31
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 22/206 (10%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALA 101
              A  V ++TG   GIG  +A   A     + +        +  V  +   +G+   + 
Sbjct: 25  TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGAR-VIF 83

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL-------FEDYTDITKPAPAM 154
           + AD++ +   +  VD  +  FGR+D LV NAG+  +          E++  I      +
Sbjct: 84  LRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTI------V 137

Query: 155 DINFWGSAYGTYFAIPYL----KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
            +N  G+ + T   +  +     +    II + S +  +  P    Y  SKA   A  + 
Sbjct: 138 GVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQG 197

Query: 211 LRVEFGGDIGITI--VTPGLIESEIT 234
           L +      GI +  V PG+I S++T
Sbjct: 198 LALRLAET-GIAVFEVRPGIIRSDMT 222

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score =  112 bits (283), Expect = 1e-30
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 29/190 (15%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
              +L+ GAS  +G  +     ++ A ++   R                   +  +  D+
Sbjct: 3   AMKILLIGASGTLGSAVKERLEKK-AEVITAGRH------------------SGDVTVDI 43

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYG 164
           + ++  K       E  G++D +V+  G        + T          +     G    
Sbjct: 44  TNIDSIKKMY----EQVGKVDAIVSATGSATFSPLTELTPEKNAV---TISSKLGGQINL 96

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIV 224
               I  L   KG   +        P  + +    +  A  A  ++  +E    I I  V
Sbjct: 97  VLLGIDSLND-KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTV 155

Query: 225 TPGLIESEIT 234
           +P ++E    
Sbjct: 156 SPNVLEESWD 165

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277

 Score =  113 bits (286), Expect = 3e-30
 Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 24/244 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
               +V L+TGA+SGIG  +A    +   R+ + AR E  LR    +    G   A    
Sbjct: 19  TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE-ADGRT 77

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DV  V + +  V   +E +G +D LV NAG            E + D+      ++ N 
Sbjct: 78  CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDV------VETNL 131

Query: 159 WGSAYGTYFAIPY---LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
            G    T   +     L++  G+I+ +AS  G       + Y+ASK   +   + L +E 
Sbjct: 132 TGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLEL 191

Query: 216 GGDIGITI--VTPGLIESEITGGKFLNKNGKLEVD-QEIRDVQISLLPV----QPTEECA 268
               GIT+  V PG +E+ +      + +   EV  +E  D   + +P+    QP  E A
Sbjct: 192 ART-GITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQP-SEVA 249

Query: 269 KAIV 272
           + + 
Sbjct: 250 EMVA 253

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273

 Score =  113 bits (286), Expect = 3e-30
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 18/199 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +AG+  ++TGA SGIG+ +A+ YAR  A ++   R +  ++EVAD+    G   A A+ 
Sbjct: 28  SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGGS-AEAVV 85

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINF 158
           AD++ +E   +  +  +    R+D LV NAG++     E+ +      +      + +N 
Sbjct: 86  ADLADLEGAANVAE-ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREV------LTVNL 138

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             +   +       L    G+I+ +AS   +     ++ Y ASK A + L   L  E+ G
Sbjct: 139 DAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAG 198

Query: 218 DIGITI--VTPGLIESEIT 234
             G+ +  + PG + +  T
Sbjct: 199 R-GVGVNALAPGYVVTANT 216

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327

 Score =  114 bits (288), Expect = 4e-30
 Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 24/246 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV---ARRERQLREVADQAELMGSPF--AL 100
           A  VVLITG SSGIG HLA   A   ++   V    R  +    + + A  +  P     
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
            +  DV   +      +   E  GR+D LV NAG+  +   E        A  +D+N  G
Sbjct: 61  TLQLDVRDSKSVAAARERVTE--GRVDVLVCNAGLGLLGPLEA-LGEDAVASVLDVNVVG 117

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVE---FG 216
           +       +P + ++  G+++V  S  G +  P    Y ASK A   L E+L V    FG
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177

Query: 217 GDIGITIVTPGLIESEITGGKFLNKNGKLEVD----------QEIRDVQISLLPVQPTEE 266
             + ++++  G + +        +    L+                  Q+     Q  EE
Sbjct: 178 --VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEE 235

Query: 267 CAKAIV 272
            A+  +
Sbjct: 236 VAEVFL 241

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score =  113 bits (285), Expect = 6e-30
 Identities = 67/247 (27%), Positives = 99/247 (40%), Gaps = 24/247 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPA 104
            GK VLITG  SGIG+ ++  +A+  A + +    E     E     E  G    + +P 
Sbjct: 46  KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVK-CVLLPG 104

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--PAMDINFWGSA 162
           D+S  + CK  V  T+   G L+ LV N         +    IT         IN +   
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQ--QGLEYITAEQLEKTFRINIFSYF 162

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGIT 222
           + T  A+ +LKQ    II  AS   +     +  Y+A+K A +A   +L        GI 
Sbjct: 163 HVTKAALSHLKQ-GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQK-GIR 220

Query: 223 I--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSAC 276
           +  V PG I + +    F         D++      S +P+    QP  E A A V  A 
Sbjct: 221 VNGVAPGPIWTPLIPSSF---------DEKKVSQFGSNVPMQRPGQP-YELAPAYVYLAS 270

Query: 277 RGDRYLT 283
               Y+T
Sbjct: 271 SDSSYVT 277

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score =  112 bits (282), Expect = 7e-30
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 31/199 (15%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  K VL+  AS GIG+ +A   ++  A + + AR E  L+    +           + 
Sbjct: 16  GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR----------YVV 65

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            D+ K       +D+  E    +D LV NAG      F     ED+ +      A+D  F
Sbjct: 66  CDLRKD------LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKE------AIDSLF 113

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                     +P   ++  G+I+ + S +   P   +   N+++ A     +TL  E   
Sbjct: 114 LNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAP 173

Query: 218 DIGITI--VTPGLIESEIT 234
             GIT+  V PG  E+E  
Sbjct: 174 Y-GITVNCVAPGWTETERV 191

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247

 Score =  111 bits (279), Expect = 2e-29
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  KV L+TGAS GIG  +A+  A + A +V  A  +    +  +  +  G   A  + 
Sbjct: 2   SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFK-ARGLV 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            ++S +E  ++F          +D LV NAG+    L      +++  +      ++ N 
Sbjct: 61  LNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSV------INTNL 114

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                 +   +   +K+  G+II + S  G    P  + Y A+KA  I   ++L  E   
Sbjct: 115 SSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVIGFSKSLAYEVAS 174

Query: 218 DIGITI--VTPGLIESEIT 234
              IT+  V PG I +++T
Sbjct: 175 R-NITVNVVAPGFIATDMT 192

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270

 Score =  111 bits (279), Expect = 3e-29
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  +V ++TGAS GIG+ +A E ARR A ++  A  E     +    +  G        
Sbjct: 25  TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLE-GRGAV 83

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+        V+ T++ FG L+ LV NAG+    L      +++  +      +D N 
Sbjct: 84  LNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAV------IDTNL 137

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                 +   +   +K   G+I+ + S  G    P    Y A+KA    +   L  E G 
Sbjct: 138 KAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGVAGMTRALAREIGS 197

Query: 218 DIGITI--VTPGLIESEIT 234
             GIT+  V PG I++++T
Sbjct: 198 R-GITVNCVAPGFIDTDMT 215

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285

 Score =  111 bits (279), Expect = 4e-29
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 16/213 (7%)

Query: 30  FKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD 89
              L    +         KV L+TGA  GIG+ +A   A+  + ++ ++R ++    V D
Sbjct: 27  MNLLSENKKENYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD 86

Query: 90  QAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDY 144
           + +  G   +     DVSK E+    ++  +     +D LV NAG+    LF     +++
Sbjct: 87  EIKSFGYE-SSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEW 145

Query: 145 TDITKPAPAMDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAA 203
            D+      +  N     Y T       +    G+II ++S  G       + Y++SKA 
Sbjct: 146 EDV------LRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG 199

Query: 204 KIALYETLRVEFGGDIGITI--VTPGLIESEIT 234
            I   ++L  E      IT+  + PG I S++T
Sbjct: 200 VIGFTKSLAKELASR-NITVNAIAPGFISSDMT 231

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239

 Score =  108 bits (273), Expect = 1e-28
 Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 27/197 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +  L+TG S GIG+ +A     R  R+ + +R   +  +            A+ +P D+ 
Sbjct: 3   RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLG---------AVPLPTDLE 53

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-----ITKPAPAMDINFWGSA 162
           K +D K  V   +E  G L  LV  A V       + +      +      + ++   + 
Sbjct: 54  K-DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRV------LYLHLDVAF 106

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWL--PPPRMSFYNASKAAKIALYETLRVEFGGDI 219
                A P+  +   G+++ + S   +    P  +  Y  +K A + L   L  E+    
Sbjct: 107 LLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARL- 165

Query: 220 GITI--VTPGLIESEIT 234
           GI +  + PG +E+E T
Sbjct: 166 GIRVNLLCPGYVETEFT 182

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264

 Score =  108 bits (271), Expect = 3e-28
 Identities = 51/250 (20%), Positives = 88/250 (35%), Gaps = 44/250 (17%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL-REVADQAELMGSPFALAI 102
               +  LIT  + G+GK +  +   +   + +    +      + +  + +       +
Sbjct: 4   GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEER-LQFV 62

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAM-------- 154
            ADV+K ED    V+  M HFG++D L+ NAG            + +    +        
Sbjct: 63  QADVTKKEDLHKIVEEAMSHFGKIDFLINNAG----------PYVFERKKLVDYEEDEWN 112

Query: 155 ---DINFWGSAYGTYFAIPY-LKQTKGKIIVVA--SAAGWLPPPRMSFYNASKAAKIALY 208
                N     +     +P   KQ  G+II      A         S + A+K   ++L 
Sbjct: 113 EMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAKVGLVSLT 172

Query: 209 ETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----Q 262
           +T+  E     GIT   V PG I  E+               QE R ++    P+     
Sbjct: 173 KTVAYEEAEY-GITANMVCPGDIIGEMKE----------ATIQEARQLKEHNTPIGRSGT 221

Query: 263 PTEECAKAIV 272
             E+ A+ I 
Sbjct: 222 G-EDIARTIS 230

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245

 Score =  107 bits (270), Expect = 4e-28
 Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 37/238 (15%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K VLITGA+ GIG+     +A+  ARLV     E  LRE A+         A  +  DV
Sbjct: 5   DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG------AHPVVMDV 58

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
           +     +      + H GRLD +V  AG+           ED+  +      + +N  GS
Sbjct: 59  ADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELV------LRVNLTGS 112

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
                 A     ++  G I++ AS    L     + Y AS A  + L  TL +E G   G
Sbjct: 113 FLVAKAASEAMREKNPGSIVLTASRVY-LGNLGQANYAASMAGVVGLTRTLALELGRW-G 170

Query: 221 ITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           I +  + PG IE+ +T           +V +++R+  I+  P+    +P  E A A +
Sbjct: 171 IRVNTLAPGFIETRMTA----------KVPEKVREKAIAATPLGRAGKP-LEVAYAAL 217

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269

 Score =  107 bits (269), Expect = 7e-28
 Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 17/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAI 102
            +  ++ L+TGAS GIG+ +A E A   A++ +  A       EV       G   A A+
Sbjct: 25  PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGE-AFAV 83

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDIN 157
            ADVS+  + +      +E +GRLD LV NAG+    L      +D+  +      +D+N
Sbjct: 84  KADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSV------LDLN 137

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             G    +  A    LKQ  G+II +AS  G +  P  + Y+A+KA  I L +T+  E  
Sbjct: 138 LGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELA 197

Query: 217 GDIGITI--VTPGLIESEIT 234
              GIT+  V PG I +++T
Sbjct: 198 SR-GITVNAVAPGFIATDMT 216

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266

 Score =  107 bits (269), Expect = 8e-28
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 19/199 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G+  L+TGA+ GIG+ +A  +  + A + L   RE +L+E+A  A+L          
Sbjct: 24  KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIA--ADLGKD--VFVFS 79

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
           A++S  +  K   +V       +D LV NAG+    LF     +D+ D+      + +N 
Sbjct: 80  ANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDV------LAVNL 133

Query: 159 WGSAYGTYFAI-PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             ++  T   I   +++  G+II + S  G +  P  + Y A+KA  I   + L  E   
Sbjct: 134 TAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIGFSKALAQEIAS 193

Query: 218 DIGITI--VTPGLIESEIT 234
              IT+  + PG I+S +T
Sbjct: 194 R-NITVNCIAPGFIKSAMT 211

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328

 Score =  107 bits (270), Expect = 1e-27
 Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 41/225 (18%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
              V L+TGA+  +G+ +A         + L   R   +   ++          A+ + A
Sbjct: 45  TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQA 104

Query: 105 DVSKVED-----------------CKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----E 142
           D+S V                   C   V     H+GR D LV NA             +
Sbjct: 105 DLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDED 164

Query: 143 DYTDITKPAPA--------MDINFWGSAYGTYFAIPYL-------KQTKGKIIVVASAAG 187
            +        A           N     +        +       + T   II +  A  
Sbjct: 165 GHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 224

Query: 188 WLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI--VTPGLIE 230
             P    + Y  +K A   L  +  +E      I +  V PGL  
Sbjct: 225 NQPLLGYTIYTMAKGALEGLTRSAALELAPL-QIRVNGVGPGLSV 268

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247

 Score =  106 bits (266), Expect = 2e-27
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAI 102
            + GK  ++TG+S G+GK +A++     A +VL  +     L   A++ +  G    +  
Sbjct: 2   QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGIN-VVVA 60

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDIN 157
             DV   ED ++ V   M+ FGR+D LV NAG+    L      +D+ D+      ++ N
Sbjct: 61  KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDV------LNTN 114

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
              +   T       LKQ  GKII + S AG +     + Y ASKA  I   +++  EF 
Sbjct: 115 LKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLIGFTKSIAKEFA 174

Query: 217 GDIGITI--VTPGLIESEIT 234
              GI    V PG+I++++T
Sbjct: 175 AK-GIYCNAVAPGIIKTDMT 193

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291

 Score =  106 bits (267), Expect = 2e-27
 Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 41/225 (18%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPA 104
              V L+TGA+  +G+ +A         + L   R   +   ++          A+ + A
Sbjct: 8   TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQA 67

Query: 105 DVSKVED-----------------CKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----E 142
           D+S V                   C   V     H+GR D LV NA             +
Sbjct: 68  DLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDED 127

Query: 143 DYTDITKPAPA--------MDINFWGSAYGTYFAIPYL-------KQTKGKIIVVASAAG 187
            +        A           N     +        +       + T   II +  A  
Sbjct: 128 GHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 187

Query: 188 WLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI--VTPGLIE 230
             P    + Y  +K A   L  +  +E      I +  V PGL  
Sbjct: 188 NQPLLGYTIYTMAKGALEGLTRSAALELAPL-QIRVNGVGPGLSV 231

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248

 Score =  105 bits (264), Expect = 2e-27
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 19/199 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++ GKV L+TGAS GIGK +A   A R A+++  A  E   + ++    L  +     + 
Sbjct: 6   NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS--DYLGDN--GKGMA 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +V+  E  +  +    + FG +D LV NAG+    L      E+++DI      M+ N 
Sbjct: 62  LNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDI------METNL 115

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
                 +   +   +K+ +G+II V S  G +     + Y A+KA  I   +++  E   
Sbjct: 116 TSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVAS 175

Query: 218 DIGITI--VTPGLIESEIT 234
             G+T+  V PG IE+++T
Sbjct: 176 R-GVTVNTVAPGFIETDMT 193

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248

 Score =  104 bits (262), Expect = 5e-27
 Identities = 45/199 (22%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + GKV L+TG++ GIG+ +A + A   + +++      + + VA++        A  + 
Sbjct: 4   KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVE 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            ++   E      +        +D LV NAG+    LF      D+ ++      + +N 
Sbjct: 64  MNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEV------LKVNL 117

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G+   T  ++   +KQ  G+I+ ++S  G+        Y+ +KA  I   ++L  E   
Sbjct: 118 TGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAP 177

Query: 218 DIGITI--VTPGLIESEIT 234
              + +  V PG IE+++T
Sbjct: 178 R-NVLVNAVAPGFIETDMT 195

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246

 Score =  104 bits (262), Expect = 5e-27
 Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 17/197 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPAD 105
           GKV L+TGAS GIG+ +A + A++ A +V+  A  E++  EV D+ + +GS  A+A+ AD
Sbjct: 4   GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD-AIAVRAD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           V+  ED  + V  T++ FG++D LV NAGV    L      E++  +      ++ N  G
Sbjct: 63  VANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTV------INTNLKG 116

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
               T     + ++Q  G+I+ +AS  G    P  + Y A+KA  I L +T   E     
Sbjct: 117 VFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASR- 175

Query: 220 GITI--VTPGLIESEIT 234
            IT+  + PG I +++T
Sbjct: 176 NITVNAIAPGFIATDMT 192

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246

 Score =  104 bits (262), Expect = 6e-27
 Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPAD 105
            K  L+TGAS GIG+ +A + A     + +  A  + +   V ++ +  G   + AI A+
Sbjct: 4   TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVD-SFAIQAN 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           V+  ++ K  +   +  FG LD LV NAG+    L      +++ D+      +D N  G
Sbjct: 63  VADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDV------IDTNLKG 116

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
                  A P  L+Q  G II ++S  G +  P  + Y A+KA  I L ++   E     
Sbjct: 117 VFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASR- 175

Query: 220 GITI--VTPGLIESEIT 234
           GIT+  V PG I S++T
Sbjct: 176 GITVNAVAPGFIVSDMT 192

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244

 Score =  104 bits (261), Expect = 8e-27
 Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 17/196 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADV 106
            VV++TGAS GIGK +A    +   ++++  AR  +   EV+ Q E  G   A+    DV
Sbjct: 2   PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQ-AITFGGDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
           SK  D +  +   ++ +G +D +V NAG+    L        + ++      +D+N  G 
Sbjct: 61  SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEV------IDLNLTGV 114

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
              T  A    +K+ KG+II +AS  G +     + Y A+KA  I   +T   E      
Sbjct: 115 FLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASR-N 173

Query: 221 ITI--VTPGLIESEIT 234
           I +  V PG I S++T
Sbjct: 174 INVNVVCPGFIASDMT 189

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255

 Score =  104 bits (261), Expect = 8e-27
 Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 27/238 (11%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
            V+ ITG++SGIG  L    AR    ++ + R +  +   AD +   G     A+ A + 
Sbjct: 2   SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI--EADLSTPGGR--ETAVAAVLD 57

Query: 108 KVEDCKHFV-----DVTMEHFGRLDHLVTNAGVVPMC--LFEDYTDITKPAPAMDINFWG 160
           +       +              L   V   GV  +   L E  +   +PA A+ +    
Sbjct: 58  RCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPA-AVIVGSIA 116

Query: 161 SAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
           +       +P ++         A             Y  SK A   L     V++ G  G
Sbjct: 117 ATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGR-G 175

Query: 221 ITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           + +  V PG +E+ +               +     +  + P+    +P  E A+AI 
Sbjct: 176 VRLNVVAPGAVETPLLQ-------ASKADPRYGESTRRFVAPLGRGSEP-REVAEAIA 225

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245

 Score =  102 bits (258), Expect = 2e-26
 Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADV 106
           +  LITGAS GIG+ +A   A     L +   +   +  EVA++A   GSP    + A++
Sbjct: 2   RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWGS 161
            + E     V    E  G LD LV NAG+    L      ED+  +      ++ N    
Sbjct: 62  LEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAV------LEANLSAV 115

Query: 162 AYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
              T  A+   +K   G+I+ + S  G L  P  + Y ASKA  I     +  E+    G
Sbjct: 116 FRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQR-G 174

Query: 221 ITI--VTPGLIESEIT 234
           IT+  V PG IE+E+T
Sbjct: 175 ITVNAVAPGFIETEMT 190

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264

 Score =  101 bits (254), Expect = 1e-25
 Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 38/258 (14%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF------A 99
              + L+TGA SGIG+ ++   A   A +          +E        GS         
Sbjct: 6   RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGR-LDHLVTNAGVVPMCLF-----EDYTDITKPAPA 153
            A  ADVS+    +  ++     F R    +V+ AG+           +D+  +      
Sbjct: 66  AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKV------ 119

Query: 154 MDINFWGSAYGTYFAIPY-LKQ-TKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
           + +N  G+   T  A    +    +G II ++S  G +     + Y ASKA  I L +T 
Sbjct: 120 IAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTA 179

Query: 212 RVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTE 265
             E G   GI    V PG I + +T           +V Q++ D    ++P+     P E
Sbjct: 180 ARELGRH-GIRCNSVLPGFIATPMTQ----------KVPQKVVDKITEMIPMGHLGDP-E 227

Query: 266 ECAKAIVNSACRGDRYLT 283
           + A  +   A     Y+T
Sbjct: 228 DVADVVAFLASEDSGYIT 245

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249

 Score = 99.1 bits (248), Expect = 6e-25
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 23/199 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ GK  LITGASSGIG  +A    +  +++++    E +L+ +     L  +       
Sbjct: 11  DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLG--NALKDN--YTIEV 66

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            +++  E+C + +         LD LV NAG+    L      +D+  +      +DIN 
Sbjct: 67  CNLANKEECSNLI----SKTSNLDILVCNAGITSDTLAIRMKDQDFDKV------IDINL 116

Query: 159 WGSAYGTYFAI-PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
             +      AI   +++  G+II ++S  G    P  + Y ASKA  I + ++L  E   
Sbjct: 117 KANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVAT 176

Query: 218 DIGITI--VTPGLIESEIT 234
             GIT+  V PG I+S++T
Sbjct: 177 R-GITVNAVAPGFIKSDMT 194

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247

 Score = 98.8 bits (247), Expect = 8e-25
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 27/201 (13%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
                 + VL+TG + GIG  +A   A    ++ +  R     +                
Sbjct: 10  KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG------------LFG 57

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDI 156
           +  DV+  +          EH G ++ LV+NAG+           E +  +      ++ 
Sbjct: 58  VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKV------INA 111

Query: 157 NFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF 215
           N  G+      A     +   G++I + S +G       + Y ASKA  I +  ++  E 
Sbjct: 112 NLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIAREL 171

Query: 216 GGDIGITI--VTPGLIESEIT 234
                +T   V PG I++++T
Sbjct: 172 SKA-NVTANVVAPGYIDTDMT 191

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253

 Score = 98.4 bits (246), Expect = 1e-24
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 27/199 (13%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
               + VL+TG + GIG  +A  +A    ++ +  R                    LA+ 
Sbjct: 18  SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------------FLAVK 65

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            D++  E  +       E  G ++ L+ NAGV    L      ED+T +      ++ N 
Sbjct: 66  CDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSV------VETNL 119

Query: 159 WGSAYGTYFAI-PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G+      A    L+  KG++++++S  G L     + Y ASKA  +    +L  E G 
Sbjct: 120 TGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGS 179

Query: 218 DIGITI--VTPGLIESEIT 234
              IT   V PG +++++T
Sbjct: 180 R-NITFNVVAPGFVDTDMT 197

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 37/236 (15%), Positives = 75/236 (31%), Gaps = 59/236 (25%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
            +++I+G ++GIG            ++V +  R+ ++                   AD+S
Sbjct: 2   SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI------------------ADLS 43

Query: 108 KVEDCKHFV-DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
             E  K  + DV  +    +D LV  AG+ P                + +N++G+     
Sbjct: 44  TAEGRKQAIADVLAKCSKGMDGLVLCAGLGP--------QTKVLGNVVSVNYFGATELMD 95

Query: 167 FAIPYLKQT-KGKIIVVASAAGWL----------------------------PPPRMSFY 197
             +P LK+  +   +V++S A                                      Y
Sbjct: 96  AFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAY 155

Query: 198 NASKAAKIALYETLRVEFGGDIGITI--VTPGLIESEITGGKFLNKNGKLEVDQEI 251
             SK A           +G   G+ +  + PG  E+ +      +      + + +
Sbjct: 156 AGSKNALTVAVRKRAAAWGEA-GVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV 210

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322

 Score = 99.0 bits (247), Expect = 2e-24
 Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 33/214 (15%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLV----------LVARRERQLREVADQAELMGS 96
           G+VV++TGA  GIG+  A  +A   AR+V            A      + V D+    G 
Sbjct: 27  GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG 86

Query: 97  PFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPA 151
             A+A  ++V+  +     +   +E FG LD LV NAG+V   +      E++  +    
Sbjct: 87  E-AVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAV---- 141

Query: 152 PAMDINFWGSAYGTYFAIPY-------LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK 204
             + ++  G       A  Y        K   G+II  +S AG         Y+A+KA  
Sbjct: 142 --IAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQGNYSAAKAGI 199

Query: 205 IALYETLRVEFGGDIGITI--VTPGLIESEITGG 236
             L      E  G  G+T+  + P    + +T  
Sbjct: 200 ATLTLVGAAE-MGRYGVTVNAIAPS-ARTRMTET 231

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 23/208 (11%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  +V ++TGASSG+G  +    A+  A ++ +  +     E A  AEL  +       
Sbjct: 4   QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPA--AELGAA--VRFRN 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP------AMDIN 157
           ADV+   D    +    + FG +  LV  AG  P          + P         + +N
Sbjct: 60  ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKI---LGRSGPHALDSFARTVAVN 116

Query: 158 FWGSAYGTYFAIPYLKQTK-------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
             G+      A   + Q +       G I+  AS A +      + Y ASK    AL   
Sbjct: 117 LIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLP 176

Query: 211 LRVEFGGDIGITIVT--PGLIESEITGG 236
              E     GI +VT  PG+ ++ +  G
Sbjct: 177 AAREL-ARFGIRVVTIAPGIFDTPMMAG 203

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            V G V +ITG +SG+G   A     + A  VL+          A   +L  +   +  P
Sbjct: 9   SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA--KKLGNN--CVFAP 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP------AMDIN 157
           ADV+  +D +  + +    FGR+D  V  AG+       +     +          +D+N
Sbjct: 65  ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKK-GQTHTLEDFQRVLDVN 123

Query: 158 FWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYET 210
             G+          + Q        +G II  AS A +      + Y+ASK   + +   
Sbjct: 124 LMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLP 183

Query: 211 LRVEFGGDIGITIVT--PGLIESEITGG 236
           +  +    IGI ++T  PGL  + +   
Sbjct: 184 IARDL-APIGIRVMTIAPGLFGTPLLTS 210

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319

 Score = 98.6 bits (246), Expect = 3e-24
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 26/191 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL---------VARRERQLREVADQAELMGSP 97
           G+VVL+TGA  G+G+  A  +A R A +V+         V +      +V ++    G  
Sbjct: 9   GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK 68

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAP 152
              A+ A+   VE  +  V   ++ FGR+D +V NAG++    F     ED+  I     
Sbjct: 69  ---AV-ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDII----- 119

Query: 153 AMDINFWGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
              ++  GS   T  A  ++ KQ  G+II+ ASA+G       + Y+A+K   + L  TL
Sbjct: 120 -QRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTL 178

Query: 212 RVEFGGDIGIT 222
            +E G    I 
Sbjct: 179 VIE-GRKNNIH 188

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 97.0 bits (242), Expect = 6e-24
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 18/206 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
              G   +++G + G+G+            +V+      + + +A   EL     A  + 
Sbjct: 27  QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALA--DELGNR--AEFVS 82

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP----APAMDINFW 159
            +V+  +     ++   +       +V + G                       +D+   
Sbjct: 83  TNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLN 142

Query: 160 GSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
           G+          +          +G +++ AS AG+      + Y A+KA  I L     
Sbjct: 143 GTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAA 202

Query: 213 VEFGGDIGITIVT--PGLIESEITGG 236
            +     GI + T  PG +++ I   
Sbjct: 203 RDL-SSAGIRVNTIAPGTMKTPIMES 227

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256

 Score = 94.5 bits (236), Expect = 3e-23
 Identities = 46/239 (19%), Positives = 90/239 (37%), Gaps = 32/239 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPAD 105
            ++  +TG   GIG  +     +   R+V        +  +  +  + +G     A   +
Sbjct: 13  QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFD-FYASEGN 71

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           V   +  K   D      G +D LV NAG+    +F     ED+  +      +D N   
Sbjct: 72  VGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAV------IDTNLTS 125

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
               T   I   +++  G+II ++S  G       + Y+ +KA       +L  E     
Sbjct: 126 LFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATK- 184

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
           G+T+  V+PG I +++             +  ++ +  ++ +PV     P +E    + 
Sbjct: 185 GVTVNTVSPGYIGTDMVK----------AIRPDVLEKIVATIPVRRLGSP-DEIGSIVA 232

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269

 Score = 94.2 bits (235), Expect = 6e-23
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 17/197 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPAD 105
            +V  +TG   G+G  ++         + +  + R   +          G     A   D
Sbjct: 25  KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRD-FKAYAVD 83

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINFWG 160
           V+  E C+   +  +  FG++D L+ NAG+     F      D+  +      M  +   
Sbjct: 84  VADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAV------MRTDLDA 137

Query: 161 SAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
               T   I   +++  G+I+ + S  G       + Y ++KA      +TL +E     
Sbjct: 138 MFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKR- 196

Query: 220 GITI--VTPGLIESEIT 234
           GIT+  V+PG + + + 
Sbjct: 197 GITVNTVSPGYLATAMV 213

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 96.7 bits (241), Expect = 1e-22
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 26/191 (13%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL---------VARRERQLREVADQAELMGSP 97
            KVV+ITGA  G+GK+ + E+A+  A++V+              +    V D+    G  
Sbjct: 8   DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG-- 65

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAP 152
             +A+ AD + V D    V+  +++FG +  ++ NAG++          +DY  +     
Sbjct: 66  -GVAV-ADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLV----- 118

Query: 153 AMDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
            +D++  G+   T  A PY  KQ  G+I+  +S AG       + Y ++K+A +   ETL
Sbjct: 119 -IDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETL 177

Query: 212 RVEFGGDIGIT 222
             E G    I 
Sbjct: 178 AKE-GAKYNIK 187

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 18/185 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  KVVLITGA +G+GK  A  +A+  A++V+   ++    +  D+ +  G   A    
Sbjct: 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDAT--KTVDEIKAAGGE-AWPDQ 375

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDYTDITKPAPAMDINF 158
            DV+  +D +  +   ++ +G +D LV NAG++    F     +++  +        ++ 
Sbjct: 376 HDVA--KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSV------QQVHL 427

Query: 159 WGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            G+   +  A PY +++  G+II + S +G       + Y++SKA  + L +T+ +E G 
Sbjct: 428 IGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIE-GA 486

Query: 218 DIGIT 222
              I 
Sbjct: 487 KNNIK 491

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613

 Score = 91.8 bits (228), Expect = 4e-21
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 16/186 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVL---------VARRERQLREVADQAELMGSP 97
           G+V ++TGA +G+G+  A  +A R A++V+             +R    V D+    G  
Sbjct: 19  GRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG-- 76

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDIN 157
              A+ AD + V D    ++  ++ FGR+D LV NAG++        ++        D++
Sbjct: 77  -GEAV-ADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSE-QDWNLVNDVH 133

Query: 158 FWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
             GS   T  A PY  KQ  G+II+ +S +G         Y A+K   I L  T+ +E G
Sbjct: 134 LKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLIGLANTVAIE-G 192

Query: 217 GDIGIT 222
               + 
Sbjct: 193 ARNNVL 198

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score = 89.6 bits (222), Expect = 6e-21
 Identities = 51/286 (17%), Positives = 84/286 (29%), Gaps = 80/286 (27%)

Query: 38  RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
            T        +  ++TG + GIG  +  + +     +VL  R   +  E  ++ +     
Sbjct: 3   ETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE 62

Query: 98  FALAIPADV-SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA--- 153
             +    DV   +       D    HFG+LD LV NAGV    +  D             
Sbjct: 63  NVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDS 122

Query: 154 --------------------------MDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAA 186
                                     + IN+ G    T   IP L+ +   +I+ V+S+ 
Sbjct: 123 EELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSST 182

Query: 187 GWLP-------------------------------------------PPRMSFYNASKAA 203
           G L                                            P   + Y  SKA 
Sbjct: 183 GSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKAC 242

Query: 204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQ 249
             A    L  +      +  V PGL+++E+  G      G    ++
Sbjct: 243 LNAYTRVLANKIPK-FQVNCVCPGLVKTEMNYGI-----GNYTAEE 282

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257

 Score = 88.4 bits (220), Expect = 7e-21
 Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 37/214 (17%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++   V ++TG +SG+G           A++V++  R   +         +G   A    
Sbjct: 6   EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV------VADLGDR-ARFAA 58

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVV----------PMCLFEDYTDITKPAPA 153
           ADV+        +D+  E  G L  +V  AG               L   +  I      
Sbjct: 59  ADVTDEAAVASALDLA-ETMGTLRIVVNCAGTGNAIRVLSRDGVFSL-AAFRKI------ 110

Query: 154 MDINFWGSAYGTYFAIPYLKQT---------KGKIIVVASAAGWLPPPRMSFYNASKAAK 204
           +DIN  GS      A   + +T         +G II  AS A +      + Y+ASK   
Sbjct: 111 VDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGV 170

Query: 205 IALYETLRVEFGGDIGITIVT--PGLIESEITGG 236
           + +   +  +      I ++T  PGL ++ +   
Sbjct: 171 VGMTLPIARDL-ASHRIRVMTIAPGLFDTPLLAS 203

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 52/241 (21%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPA 104
              V L+TG + GIG  +  +  R     +VL AR   + +    Q +  G         
Sbjct: 3   GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQL 61

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           D+  ++  +   D   + +G LD LV NAG+    + +      +    M  NF+G+   
Sbjct: 62  DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-FKVADPTPFHIQAEVTMKTNFFGTRDV 120

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF---------------------------- 196
               +P +K   G+++ V+S          S                             
Sbjct: 121 CTELLPLIKPQ-GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK 179

Query: 197 -------------YNASKAAKIA----LYETLRVEFGGDIGITI--VTPGLIESEITGGK 237
                        Y  +K             L  +  GD  I +    PG + +++ G K
Sbjct: 180 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGD-KILLNACCPGWVRTDMAGPK 238

Query: 238 F 238
            
Sbjct: 239 A 239

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 32/204 (15%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV ++TGA+ GIG  +A  +AR  A +V +        ++   A+ +G     A+  D
Sbjct: 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKVG---GTALTLD 267

Query: 106 VSKVEDCKHFVDVTMEHFG-RLDHLVTNAGVVPMCLFEDYTDITKPAPAM---------- 154
           V+  +          EH G ++D LV NAG            IT+               
Sbjct: 268 VTADDAVDKITAHVTEHHGGKVDILVNNAG------------ITRDKLLANMDEKRWDAV 315

Query: 155 -DINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLR 212
             +N       T   +        G++I ++S AG       + Y  +KA  I L E L 
Sbjct: 316 IAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGLAEALA 375

Query: 213 VEFGGDIGITI--VTPGLIESEIT 234
                  GITI  V PG IE+++T
Sbjct: 376 PVLADK-GITINAVAPGFIETKMT 398

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242

 Score = 82.7 bits (205), Expect = 5e-19
 Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 39/207 (18%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +  L+TG +SG+G+  A     R  R+V           V D          + +  DV+
Sbjct: 3   RSALVTGGASGLGRAAALALKARGYRVV-----------VLDLRREGED--LIYVEGDVT 49

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL---------FEDYTDITKPAPAMDINF 158
           + ED +  V    E    L  +V+ AGV               E +  +      +++N 
Sbjct: 50  REEDVRRAVARAQE-EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRV------LEVNL 102

Query: 159 WGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETL 211
            G+      A   +++        +G I+  AS A +      + Y ASK   +AL    
Sbjct: 103 LGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPA 162

Query: 212 RVEFGGDIGITIVT--PGLIESEITGG 236
             E     GI +VT  PGL ++ +  G
Sbjct: 163 AREL-AGWGIRVVTVAPGLFDTPLLQG 188

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 43/247 (17%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
             V++TGA+ GIG  L  +  + +    ++A   R + +  +   +  S   + +P  V+
Sbjct: 4   GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATA-RDVEKATELKSIKDSRVHV-LPLTVT 61

Query: 108 KVEDCKHFVDVTMEHFGR--LDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDINFWG 160
             +    FV    E  G   L  L+ NAGV        Y   T+P  A     +D+N   
Sbjct: 62  CDKSLDTFVSKVGEIVGSDGLSLLINNAGV-----LLSYGTNTEPNRAVIAEQLDVNTTS 116

Query: 161 SAYGTYFAIPYLKQ------------TKGKIIVVASAAGWL-------PPPRMSFYNASK 201
               T   +P LK             ++  +I ++S  G +           +  Y  SK
Sbjct: 117 VVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSK 176

Query: 202 AAKIALYETLRVEFGGDIGITIVT--PGLIESEITGGKFLNKNGKLEVDQEIRDV--QIS 257
           AA      TL V+   D  + +V   PG +++ + G     KN  L V+Q   ++    +
Sbjct: 177 AAINMFGRTLAVDLKDD-NVLVVNFCPGWVQTNLGG-----KNAALTVEQSTAELISSFN 230

Query: 258 LLPVQPT 264
            L     
Sbjct: 231 KLDNSHN 237

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 48/246 (19%), Positives = 81/246 (32%), Gaps = 42/246 (17%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLV---ARRERQLREVADQAELMGSPFALAIPA 104
             +LITG + G+G  L             +    R   Q +E+ D A+         +  
Sbjct: 22  NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK--NHSNIHILEI 79

Query: 105 DVSKVEDCKHFVDVTMEHFG--RLDHLVTNAGVVPMCLFEDYTDITKPAPA-----MDIN 157
           D+   +     V           L+ L  NAG+ P         IT          +  N
Sbjct: 80  DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAP-----KSARITAVRSQELLDTLQTN 134

Query: 158 FWGSAYGTYFAIPYLKQ------------TKGKIIVVASAAGWL---PPPRMSFYNASKA 202
                      +P LK+             +  II ++S  G +       M  Y  SK+
Sbjct: 135 TVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKS 194

Query: 203 AKIALYETLRVEFGGDIGITIVT--PGLIESEITGGKFLNKNGKLEVDQEIRDV--QISL 258
           A  A  ++L V+      I  V+  PG +++++ G      +  L+V      +   IS 
Sbjct: 195 ALNAATKSLSVDLYPQ-RIMCVSLHPGWVKTDMGGS-----SAPLDVPTSTGQIVQTISK 248

Query: 259 LPVQPT 264
           L  +  
Sbjct: 249 LGEKQN 254

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ--AELMGSPFALA 101
             A + V+ITGA+SG+G   A E ARR A +++  R  R+    A     ++      L 
Sbjct: 13  SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQ 72

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGV 135
             + V      + F     +     D L+ NAG+
Sbjct: 73  DLSSV------RRFA----DGVSGADVLINNAGI 96

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 9/91 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            V GK  ++   +  +G   A   A   A +VL  R+  + +  AD              
Sbjct: 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK--VNVTA 173

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG 134
           A+ +             E       + T   
Sbjct: 174 AETADDASRA-------EAVKGAHFVFTAGA 197

>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH]; oxidoreductase, short-chain dehydrogenase/reductase superfam fatty acid biosynthesis; HET: NAP E9P GLU; 1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A* 4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A* Length = 282

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 44  DVAGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
           ++  K  +I G ++      G+ K L     +  A+LV   R+ER  +E+    E +  P
Sbjct: 29  NLENKTYVIMGIANKRSIAFGVAKVLD----QLGAKLVFTYRKERSRKELEKLLEQLNQP 84

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAM 154
            A     DV   E+  +  +   +  G +D +  +     M  L   +++ ++     A 
Sbjct: 85  EAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQ 144

Query: 155 DINFWGSAY 163
           DI    S+Y
Sbjct: 145 DI----SSY 149

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* Length = 266

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 17/129 (13%)

Query: 44  DVAGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
            + G+ +++ G ++      GI + L        ARL+     ER  + V + A  +   
Sbjct: 4   SLEGRNIVVMGVANKRSIAWGIARSLH----EAGARLIFTYAGERLEKSVHELAGTLDRN 59

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAM 154
            ++ +P DV+   + +       E  G +  +           L  +Y +  +     A 
Sbjct: 60  DSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAH 119

Query: 155 DINFWGSAY 163
           +I    S+Y
Sbjct: 120 NI----SSY 124

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* Length = 261

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 19/129 (14%)

Query: 44  DVAGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP 97
           D++GK  L+ G ++       I   L        A + L  + ER   E    AE +G  
Sbjct: 5   DLSGKKALVMGVTNQRSLGFAIAAKLK----EAGAEVALSYQAERLRPEAEKLAEALGGA 60

Query: 98  FALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAM 154
                 ADV++ E+         E FG LD+LV      P   +   Y D  +     A+
Sbjct: 61  LLF--RADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLAL 118

Query: 155 DINFWGSAY 163
           ++    SAY
Sbjct: 119 EV----SAY 123

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* Length = 275

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
            GK  LI G ++      GI +        + A L      E   + V   A+ + SP+ 
Sbjct: 5   KGKKGLIVGVANNKSIAYGIAQSCF----NQGATLAFTYLNESLEKRVRPIAQELNSPYV 60

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAMDI 156
                DVSK E  K   +   +  G LD +V +    P   L     + +K     AM+I
Sbjct: 61  Y--ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEI 118

Query: 157 NFWGSAY 163
               S Y
Sbjct: 119 ----SVY 121

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} Length = 285

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 47/184 (25%), Positives = 68/184 (36%), Gaps = 44/184 (23%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
            GK  LITG ++      GI K       R  A+L       +  + V + A+  GS   
Sbjct: 20  EGKRALITGVANERSIAYGIAKSFH----REGAQLAFTYATPKLEKRVREIAKGFGSDLV 75

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAMDI 156
           +    DVS  ED K+      E++G LD +V +    P         D ++     AMDI
Sbjct: 76  V--KCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDI 133

Query: 157 NFWGSAYG----TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA---------A 203
               S Y     T   +P ++   G I+             +S+Y A K          A
Sbjct: 134 ----SVYSLIALTRELLPLMEGRNGAIVT------------LSYYGAEKVVPHYNVMGIA 177

Query: 204 KIAL 207
           K AL
Sbjct: 178 KAAL 181

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* Length = 293

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 19/127 (14%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
            GK  LI G ++      GI K          A L    + +   + V   AE +G+  A
Sbjct: 30  QGKRGLILGVANNRSIAWGIAKAAR----EAGAELAFTYQGDALKKRVEPLAEELGAFVA 85

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAMDI 156
                DV+         +   + +G+LD LV   G      L   Y D ++      M I
Sbjct: 86  G--HCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLI 143

Query: 157 NFWGSAY 163
               S Y
Sbjct: 144 ----SVY 146

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* Length = 296

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
            GK  +I G ++      GI K +      + A + L    E   + V   AE +G    
Sbjct: 29  EGKKGVIIGVANDKSLAWGIAKAVC----AQGAEVALTYLSETFKKRVDPLAESLGVKLT 84

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP--APAMDI 156
           +  P DVS  E   +   V  E +G LD +V          L   Y D +      +M I
Sbjct: 85  V--PCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHI 142

Query: 157 NFWGSAY 163
               S Y
Sbjct: 143 ----SCY 145

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} Length = 271

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 34/128 (26%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
            GK +L+TG  S      GI K       R  A L      +R    + + A   GS   
Sbjct: 13  DGKRILLTGLLSNRSIAYGIAKACK----REGAELAFTYVGDRFKDRITEFAAEFGSELV 68

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP---APAMD 155
              P DV+              H+  LD LV + G  P   +  D+ D         A D
Sbjct: 69  F--PCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHD 126

Query: 156 INFWGSAY 163
           I    SAY
Sbjct: 127 I----SAY 130

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* Length = 265

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 20/128 (15%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
           +GK +L+TG +S      GI + +     R  A L    + ++    V + A  +GS   
Sbjct: 8   SGKRILVTGVASKLSIAYGIAQAMH----REGAELAFTYQNDKLKGRVEEFAAQLGSDIV 63

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP---APAMD 155
           L    DV++            + + + D  V + G  P   L  DY +         A D
Sbjct: 64  L--QCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHD 121

Query: 156 INFWGSAY 163
           I    S+Y
Sbjct: 122 I----SSY 125

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 2jjy_A* Length = 280

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 40/185 (21%), Positives = 60/185 (32%), Gaps = 46/185 (24%)

Query: 46  AGKVVLITGASS------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA 99
           AGK +LITG  S      GI K +     R  A L      + + R V            
Sbjct: 25  AGKKILITGLLSNKSIAYGIAKAMH----REGAELAFTYVGQFKDR-VEKLCAEFNPAAV 79

Query: 100 LAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKP---APAMD 155
           L  P DV   ++ K       + +  LD +V +    P   L  ++ D       + A D
Sbjct: 80  L--PCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHD 137

Query: 156 INFWGSAYG----TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA--------- 202
           I    SAY            +K     ++             +++  A KA         
Sbjct: 138 I----SAYSFAALAKEGRSMMKNRNASMVA------------LTYIGAEKAMPSYNTMGV 181

Query: 203 AKIAL 207
           AK +L
Sbjct: 182 AKASL 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	100.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	100.0
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	100.0
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	100.0
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	100.0
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	100.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	100.0
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	100.0
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	100.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	100.0
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	100.0
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	100.0
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	100.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	100.0
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	100.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	100.0
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	100.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	100.0
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	100.0
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	100.0
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	100.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	100.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	100.0
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	100.0
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	100.0
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	100.0
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3rih_A	293	Short chain dehydrogenase or reductase; structural	100.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	100.0
4dqx_A	277	Probable oxidoreductase protein; structural genomi	100.0
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	100.0
3imf_A	257	Short chain dehydrogenase; structural genomics, in	100.0
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	100.0
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	100.0
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	100.0
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	100.0
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	100.0
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	100.0
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	100.0
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	100.0
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	100.0
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	100.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	100.0
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	100.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	100.0
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	100.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	100.0
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	100.0
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	100.0
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	100.0
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	100.0
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	100.0
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	100.0
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	100.0
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	100.0
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	100.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	100.0
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	100.0
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	100.0
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	100.0
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	100.0
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	100.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	100.0
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	100.0
3cxt_A	291	Dehydrogenase with different specificities; rossma	100.0
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	100.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	100.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	100.0
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	100.0
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	100.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	100.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	100.0
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	100.0
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	100.0
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	100.0
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	100.0
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	100.0
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	100.0
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	100.0
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	100.0
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	100.0
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	100.0
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	100.0
1xhl_A	297	Short-chain dehydrogenase/reductase family member	100.0
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	100.0
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	100.0
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	100.0
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	100.0
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	100.0
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	100.0
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	100.0
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	100.0
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	100.0
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	100.0
1xkq_A	280	Short-chain reductase family member (5D234); parra	100.0
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	100.0
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	100.0
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	100.0
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	100.0
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
1spx_A	278	Short-chain reductase family member (5L265); paral	100.0
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	100.0
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	100.0
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	100.0
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	100.0
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	100.0
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	100.0
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	100.0
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	100.0
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	100.0
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	100.0
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	100.0
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	100.0
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	100.0
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	100.0
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	100.0
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	100.0
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	100.0
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	100.0
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	100.0
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	100.0
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	100.0
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	100.0
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	100.0
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	100.0
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	100.0
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	100.0
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	100.0
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	100.0
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	100.0
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	100.0
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	100.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	100.0
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	100.0
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	100.0
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	100.0
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	100.0
1xq1_A	266	Putative tropinone reducatse; structural genomics,	100.0
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	100.0
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	100.0
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	100.0
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	100.0
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	100.0
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	100.0
4e4y_A	244	Short chain dehydrogenase family protein; structur	100.0
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	100.0
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	100.0
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	100.0
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	100.0
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	100.0
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	100.0
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	100.0
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	100.0
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	100.0
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	100.0
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	100.0
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	100.0
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	100.0
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	100.0
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	100.0
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	100.0
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	100.0
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	100.0
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	100.0
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	100.0
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	100.0
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	100.0
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	100.0
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	100.0
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	100.0
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	100.0
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	100.0
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	100.0
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	100.0
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	100.0
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	100.0
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	100.0
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	100.0
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	100.0
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	100.0
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	100.0
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	100.0
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	100.0
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	100.0
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	100.0
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	100.0
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	100.0
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	100.0
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	100.0
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	100.0
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	100.0
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	100.0
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	100.0
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	100.0
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	100.0
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	100.0
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	100.0
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.98
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.98
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.97
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.97
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.97
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.95
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.95
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.94
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.93
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.93
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.92
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.9
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.89
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.89
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.88
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.88
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.88
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.88
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.88
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.87
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.87
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.87
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.86
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.86
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.86
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.85
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.85
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.85
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.84
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.84
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.84
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.84
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.84
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.84
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.83
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.83
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.83
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.83
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.83
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.83
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.83
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.82
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.82
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.82
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.82
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.81
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.81
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.81
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.81
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.8
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.8
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.8
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.8
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.8
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.8
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.8
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.8
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.79
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.79
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.79
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.79
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.78
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.77
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.77
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.77
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.76
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.76
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.76
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.75
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.74
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.73
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.73
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.72
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.71
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.7
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.7
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.7
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.7
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.69
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.68
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.68
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.67
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.67
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.66
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.64
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.62
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.61
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.6
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.57
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.55
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.55
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.54
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.53
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.42
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.41
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.4
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	99.04
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.98
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.91
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.84
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.81
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.78
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.7
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.61
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	98.59
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.58
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.55
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.5
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.49
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.49
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.46
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.38
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.36
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.33
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.32
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.3
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.27
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.23
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.22
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.21
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.2
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.2
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.19
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.18
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.14
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.14
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.13
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.09
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.08
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.05
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.02
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.97
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.95
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.95
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.93
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.92
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.89
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.8
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.78
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.76
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.75
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.74
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.72
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.69
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.68
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.66
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.66
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.63
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.58
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.58
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.53
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.53
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.52
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.52
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.5
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.47
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.44
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.37
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.37
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.36
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.34
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.32
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.29
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.26
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.25
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.2
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.2
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.16
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.15
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.12
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.08
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.05
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.03
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.02
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.99
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	96.94
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.9
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.89
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.86
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.84
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.8
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.8
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.78
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.78
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.78
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.75
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.73
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.67
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.65
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.64
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.63
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.63
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.62
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.62
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.56
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.55
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.54
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.54
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.53
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.53
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.52
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.48
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.43
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.42
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.4
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.39
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.38
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.37
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.25
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.23
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.23
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.23
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.12
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.05
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.05
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.05
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.04
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.98
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.98
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.73
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.71
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.7
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.65
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.61
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.6
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.6
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.57
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.49
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	95.48
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.47
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.47
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.47
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.46
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.45
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.41
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.4
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.4
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.36
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.34
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.33
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.31
1lnq_A	336	MTHK channels, potassium channel related protein;	95.31
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.27
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.21
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.19
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.17
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.15
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.02
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.99
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.98
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.96
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.95
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	94.92
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.87
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.81
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.78
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.78
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	94.77
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.62
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.59
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.57
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.54
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.54
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.54
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.53
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.52
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.52
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	94.51
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.49
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.48

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=5.9e-56  Score=379.14  Aligned_cols=241  Identities=25%  Similarity=0.342  Sum_probs=212.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++|+||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+. ++..+++|++|+++++++++++.+
T Consensus         2 y~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             CGGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999987764 699999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++|++|+||||||+... .++.+ .+.++|++++++|+.++++++|+++|.|++++ |+|||+||..+..+.++..+|++
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~-~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~a  159 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAE-VSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTV  159 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHH
T ss_pred             HcCCCCEEEECCcccCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHH
Confidence            99999999999998754 44545 45589999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+|+.+|+|+||.|++++ ||||+|+||+++|+|........+   ...++..+...+..++++|||||++++||+|++
T Consensus       160 sKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~---~~~~~~~~~~~~~~R~g~pediA~~v~fLaSd~  236 (254)
T 4fn4_A          160 AKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSE---LGMRTLTKLMSLSSRLAEPEDIANVIVFLASDE  236 (254)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCH---HHHHHHHHHHTTCCCCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcH---HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCch
Confidence            9999999999999999998 999999999999999765332211   111223334445567889999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       237 a~~iTG~~i  245 (254)
T 4fn4_A          237 ASFVNGDAV  245 (254)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCCcCCEE
Confidence            999999964

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=6.3e-55  Score=373.01  Aligned_cols=239  Identities=20%  Similarity=0.188  Sum_probs=212.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++||+++||||++|||+++|++|+++|++|++++|+.+.+++..++++..+. ++..+++|++|+++++++++++.+
T Consensus         4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999999999987754 699999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~--~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++|++|++|||||.....++.+. +.++|++++++|+.++++++|+++|.|.+  ++|+|||+||..+..+.|+...|++
T Consensus        83 ~~G~iDiLVNNAG~~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~a  161 (255)
T 4g81_D           83 EGIHVDILINNAGIQYRKPMVEL-ELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTA  161 (255)
T ss_dssp             TTCCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHH
T ss_pred             HCCCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHH
Confidence            99999999999999988877775 55899999999999999999999999954  3489999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+|+.+|+|++|.|++++ ||||+|+||+++|+|.......+     ...+......+..++++|||||++++||+|++
T Consensus       162 sKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~-----~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~  236 (255)
T 4g81_D          162 AKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDK-----QFDSWVKSSTPSQRWGRPEELIGTAIFLSSKA  236 (255)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCH-----HHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCH-----HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCch
Confidence            9999999999999999998 99999999999999976543211     11222333445556668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       237 a~~iTG~~i  245 (255)
T 4g81_D          237 SDYINGQII  245 (255)
T ss_dssp             GTTCCSCEE
T ss_pred             hCCCcCCEE
Confidence            999999964

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=100.00  E-value=4.4e-54  Score=371.04  Aligned_cols=236  Identities=24%  Similarity=0.295  Sum_probs=202.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+|+||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+++|++|+++++++++++.++
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI----GGGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999998887776    246888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|++|+||||||.....++.+. +.++|++.+++|+.++++++|+++|.|++ +|+||++||..+..+.|+..+|++||+
T Consensus       101 ~G~iDiLVNNAG~~~~~~~~~~-~~e~w~~~~~vNl~g~~~~~~~~~p~m~~-~G~IInisS~~~~~~~~~~~~Y~asKa  178 (273)
T 4fgs_A          101 AGRIDVLFVNAGGGSMLPLGEV-TEEQYDDTFDRNVKGVLFTVQKALPLLAR-GSSVVLTGSTAGSTGTPAFSVYAASKA  178 (273)
T ss_dssp             HSCEEEEEECCCCCCCCCTTSC-CHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEECCGGGGSCCTTCHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhc-cHHHHHHHHHHHhHHHHHHHHHHHHHHhh-CCeEEEEeehhhccCCCCchHHHHHHH
Confidence            9999999999999888777775 55899999999999999999999999975 689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+.+|+|++|.|++++ ||||+|+||+++|++........+   ...++..+.+.   +..++++|||||++++||+|++
T Consensus       179 av~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~---~~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~  255 (273)
T 4fgs_A          179 ALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDP---VQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDD  255 (273)
T ss_dssp             HHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CH---HHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCc---hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCch
Confidence            9999999999999998 999999999999999876432211   11233344333   4445567999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       256 a~~iTG~~i  264 (273)
T 4fgs_A          256 SSFVTGAEL  264 (273)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCccCCeE
Confidence            999999964

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=100.00  E-value=4.5e-53  Score=362.79  Aligned_cols=237  Identities=24%  Similarity=0.277  Sum_probs=200.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++|+||+++||||++|||+++|++|+++|++|++++|+.++.+. .+++...+ .++.++++|++|+++++++++++.++
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~v~~~~~~   80 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQRQ-PRATYLPVELQDDAQCRDAVAQTIAT   80 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHHC-TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhcC-CCEEEEEeecCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998876543 34444444 36889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|++|++|||||+...... + .+.++|++.+++|+.+++.++|+++|.|++++|+|||+||..+..+.|+...|++||+
T Consensus        81 ~G~iDiLVNnAGi~~~~~~-~-~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asKa  158 (258)
T 4gkb_A           81 FGRLDGLVNNAGVNDGIGL-D-AGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQGNTSGYCASKG  158 (258)
T ss_dssp             HSCCCEEEECCCCCCCCCT-T-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCCSSCHHHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCCc-c-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCCCCchHHHHHHH
Confidence            9999999999998754433 3 3458899999999999999999999999887899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC----CCCHHHHHHHHHHhhcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP----VQPTEECAKAIVNSACR  277 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~evA~~i~~l~~~  277 (287)
                      |+.+|+|++|.|++++ ||||+|+||+++|+|.+........    +++..+......|    +++|||||++++||+|+
T Consensus       159 av~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~----~~~~~~~~~~~~plg~R~g~peeiA~~v~fLaS~  234 (258)
T 4gkb_A          159 AQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFED----PEAKLAEIAAKVPLGRRFTTPDEIADTAVFLLSP  234 (258)
T ss_dssp             HHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC---------------CHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccC----hHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCc
Confidence            9999999999999998 9999999999999998765432221    2233333444444    55799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.+
T Consensus       235 ~a~~iTG~~i  244 (258)
T 4gkb_A          235 RASHTTGEWL  244 (258)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhcCccCCeE
Confidence            9999999964

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=100.00  E-value=6.1e-53  Score=357.68  Aligned_cols=231  Identities=25%  Similarity=0.279  Sum_probs=198.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .++++|+||+++||||++|||+++|++|+++|++|++++|+..  ++..++++..+. ++..+++|++|+++++++++  
T Consensus         2 ~n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~--   76 (247)
T 4hp8_A            2 KNPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGG-NASALLIDFADPLAAKDSFT--   76 (247)
T ss_dssp             -CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTSTTTTTTSST--
T ss_pred             cCCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHH--
Confidence            3568999999999999999999999999999999999999865  345566666554 69999999999999877763  


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                         ++++|+||||||+....++.+. +.++|++++++|+.++++++|+++|.|.++  +|+|||+||..+..+.++..+|
T Consensus        77 ---~g~iDiLVNNAGi~~~~~~~~~-~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y  152 (247)
T 4hp8_A           77 ---DAGFDILVNNAGIIRRADSVEF-SELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSY  152 (247)
T ss_dssp             ---TTCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHH
T ss_pred             ---hCCCCEEEECCCCCCCCCcccc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHH
Confidence               4899999999999988877775 458999999999999999999999998653  4899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~  273 (287)
                      ++||+|+.+|+|++|.|++++ ||||+|+||+++|+|.+....        +++..+......|   +++|||||++++|
T Consensus       153 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~--------~~~~~~~~~~~~PlgR~g~peeiA~~v~f  224 (247)
T 4hp8_A          153 TAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRA--------DAARNKAILERIPAGRWGHSEDIAGAAVF  224 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--------SHHHHHHHHTTCTTSSCBCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhccc--------CHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999998 999999999999999865321        2333333444444   5579999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |+|++++|+|||.+
T Consensus       225 LaSd~a~~iTG~~i  238 (247)
T 4hp8_A          225 LSSAAADYVHGAIL  238 (247)
T ss_dssp             HTSGGGTTCCSCEE
T ss_pred             HhCchhcCCcCCeE
Confidence            99999999999864

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=100.00  E-value=7e-51  Score=346.39  Aligned_cols=222  Identities=21%  Similarity=0.301  Sum_probs=195.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||+++|++|+++|++|++++|+++.+++..++    . .++..+++|++|+++++++++++.+++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----~-~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----R-PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----C-TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----c-CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            59999999999999999999999999999999998877654432    2 358899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      |+||||||.....++.+. +.++|++++++|+.+++.++|+++|.|++++|+||++||..+..+.|+..+|++||+|+.+
T Consensus        77 DiLVNNAG~~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~~~~~~~Y~asKaal~~  155 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSL-LYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVA  155 (247)
T ss_dssp             CEEEECCCCCCCCGGGTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccCCCCCHHHHHHHHHHHH
Confidence            999999999888777665 5589999999999999999999999999888999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          207 LYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       207 ~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      |+|++|.|++++||||+|+||+++|++.....          ++.. ...+..++++|||||++++||+|+  +|||||.
T Consensus       156 ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~----------~~~~-~~~Pl~R~g~pediA~~v~fL~s~--~~iTG~~  222 (247)
T 3ged_A          156 LTHALAMSLGPDVLVNCIAPGWINVTEQQEFT----------QEDC-AAIPAGKVGTPKDISNMVLFLCQQ--DFITGET  222 (247)
T ss_dssp             HHHHHHHHHTTTSEEEEEEECSBCCCC---CC----------HHHH-HTSTTSSCBCHHHHHHHHHHHHHC--SSCCSCE
T ss_pred             HHHHHHHHHCCCCEEEEEecCcCCCCCcHHHH----------HHHH-hcCCCCCCcCHHHHHHHHHHHHhC--CCCCCCe
Confidence            99999999997899999999999999865421          2222 234555667899999999999984  7999986


Q ss_pred             C
Q 042560          287 W  287 (287)
Q Consensus       287 ~  287 (287)
                      +
T Consensus       223 i  223 (247)
T 3ged_A          223 I  223 (247)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=3.6e-51  Score=346.15  Aligned_cols=221  Identities=26%  Similarity=0.357  Sum_probs=188.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++||+++||||++|||+++|++|+++|++|++++|+.+.+++.       ...++..+++|++|+++++++++    ++|
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~-------~~~~~~~~~~Dv~~~~~v~~~~~----~~g   77 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP-------RHPRIRREELDITDSQRLQRLFE----ALP   77 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC-------CCTTEEEEECCTTCHHHHHHHHH----HCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh-------hcCCeEEEEecCCCHHHHHHHHH----hcC
Confidence            5899999999999999999999999999999999998765431       23468899999999999887764    579


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ++|+||||||+..+  ..+ .+.++|++++++|+.++++++|+++|.|++++|+|||+||..+..+.++...|++||+|+
T Consensus        78 ~iDiLVNNAGi~~~--~~~-~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~~~~~~Y~asKaav  154 (242)
T 4b79_A           78 RLDVLVNNAGISRD--REE-YDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAI  154 (242)
T ss_dssp             CCSEEEECCCCCCG--GGG-GSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSCCSSCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCC--ccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCCCCCHHHHHHHHHH
Confidence            99999999998643  333 355889999999999999999999999988789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccCCc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~~~  280 (287)
                      .+|+|++|.|++++ ||||+|+||+++|||......        +++..+......|   +++|||||++++||+|++++
T Consensus       155 ~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~--------~~~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~  226 (242)
T 4b79_A          155 VQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKA--------DVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGAS  226 (242)
T ss_dssp             HHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CC--------CHHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGT
T ss_pred             HHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccC--------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhc
Confidence            99999999999998 999999999999999875422        2344444444445   55799999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+|||.+
T Consensus       227 ~iTG~~l  233 (242)
T 4b79_A          227 FVTGAVL  233 (242)
T ss_dssp             TCCSCEE
T ss_pred             CccCceE
Confidence            9999964

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=100.00  E-value=9.1e-51  Score=349.52  Aligned_cols=237  Identities=19%  Similarity=0.138  Sum_probs=206.4

Q ss_pred             CCCCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +++|+||+++||||+|  |||+++|++|+++|++|++++|+.+.++++.+.++..++.++..+++|++|+++++++++++
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence            4789999999999875  99999999999999999999999999999988888777667999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCC---CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFE---DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      .+++|++|++|||||+....+..   .+.+.++|...+++|+.+++.+++.+.+.+++ +|+||++||..+..+.|++..
T Consensus        81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-~G~IVnisS~~~~~~~~~~~~  159 (256)
T 4fs3_A           81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE-GGSIVATTYLGGEFAVQNYNV  159 (256)
T ss_dssp             HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT-CEEEEEEECGGGTSCCTTTHH
T ss_pred             HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEEeccccccCcccchh
Confidence            99999999999999987543322   22344678889999999999999999887754 699999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~  272 (287)
                      |++||+|+.+|+|+|+.|++++ ||||+|+||+++|++.+...        ..++..+...   +..++++|||||++++
T Consensus       160 Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~--------~~~~~~~~~~~~~Pl~R~g~peevA~~v~  231 (256)
T 4fs3_A          160 MGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG--------GFNTILKEIKERAPLKRNVDQVEVGKTAA  231 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--------THHHHHHHHHHHSTTSSCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc--------CCHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9999999999999999999998 99999999999999876532        1233444333   4445568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||+|++++|+|||.+
T Consensus       232 fL~Sd~a~~iTG~~i  246 (256)
T 4fs3_A          232 YLLSDLSSGVTGENI  246 (256)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCchhcCccCCEE
Confidence            999999999999964

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=100.00  E-value=3.9e-50  Score=345.49  Aligned_cols=236  Identities=22%  Similarity=0.264  Sum_probs=196.5

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.++|+||+++||||++|||+++|++|+++|++|++++|+..+.           ......+++|++|+++++++++++
T Consensus         4 ~dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~   72 (261)
T 4h15_A            4 IEFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-----------LPEELFVEADLTTKEGCAIVAEAT   72 (261)
T ss_dssp             CCCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-----------SCTTTEEECCTTSHHHHHHHHHHH
T ss_pred             hhccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-----------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            466799999999999999999999999999999999999975421           112446889999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCC-CCh
Q 042560          120 MEHFGRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPP-RMS  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~-~~~  195 (287)
                      .+++|++|++|||||+...  .++.+ .+.++|++.+++|+.++++++|+++|.|++++ |+||++||..+..+.| +..
T Consensus        73 ~~~~G~iDilVnnAG~~~~~~~~~~~-~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~  151 (261)
T 4h15_A           73 RQRLGGVDVIVHMLGGSSAAGGGFSA-LSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTT  151 (261)
T ss_dssp             HHHTSSCSEEEECCCCCCCCSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCH
T ss_pred             HHHcCCCCEEEECCCCCccCCCCccc-CCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccH
Confidence            9999999999999998643  34444 35588999999999999999999999997654 8999999999999876 678


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCc----CCCccchHHHHhhhhcCCCC---CCHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNK----NGKLEVDQEIRDVQISLLPV---QPTEEC  267 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~p~ev  267 (287)
                      .|++||+|+.+|+|+++.|++++ ||||+|+||+++|++........    .......++..+......|+   ++||||
T Consensus       152 ~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peev  231 (261)
T 4h15_A          152 AYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEV  231 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHH
Confidence            99999999999999999999998 99999999999999876432111    01111123344444445555   479999


Q ss_pred             HHHHHHhhccCCccccCCCC
Q 042560          268 AKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       268 A~~i~~l~~~~~~~itG~~~  287 (287)
                      |+.++||+|++++|+|||.+
T Consensus       232 A~~v~fLaS~~a~~itG~~i  251 (261)
T 4h15_A          232 ANLIAFLASDRAASITGAEY  251 (261)
T ss_dssp             HHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHhCchhcCccCcEE
Confidence            99999999999999999964

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=100.00  E-value=2.3e-47  Score=329.84  Aligned_cols=247  Identities=21%  Similarity=0.232  Sum_probs=209.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-MGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      |+.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.. .++.++..+.+|++|++++++++++
T Consensus         1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   80 (265)
T 3lf2_A            1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEA   80 (265)
T ss_dssp             --CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHH
Confidence            345788999999999999999999999999999999999999999988888876 4444599999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|
T Consensus        81 ~~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  159 (265)
T 3lf2_A           81 CERTLGCASILVNNAGQGRVSTFAET-TDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVAT  159 (265)
T ss_dssp             HHHHHCSCSEEEECCCCCCCBCTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCchhh
Confidence            99999999999999999877666554 4588999999999999999999999998764 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh-----hcCCCCCCHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ-----ISLLPVQPTEECAKAI  271 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~evA~~i  271 (287)
                      ++||+|+++|++.++.|++++ |+||+|+||+++|++...............++..+..     .+..++++|||+|+++
T Consensus       160 ~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  239 (265)
T 3lf2_A          160 SAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAI  239 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHH
Confidence            999999999999999999987 9999999999999987654322211111111222111     3445566899999999


Q ss_pred             HHhhccCCccccCCCC
Q 042560          272 VNSACRGDRYLTQPSW  287 (287)
Q Consensus       272 ~~l~~~~~~~itG~~~  287 (287)
                      +||+++.++|+||+.+
T Consensus       240 ~fL~s~~~~~itG~~i  255 (265)
T 3lf2_A          240 LFLASPLSAYTTGSHI  255 (265)
T ss_dssp             HHHHSGGGTTCCSEEE
T ss_pred             HHHhCchhcCcCCCEE
Confidence            9999999999999863

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=2.1e-46  Score=323.36  Aligned_cols=237  Identities=23%  Similarity=0.351  Sum_probs=209.2

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+..++.++++|++|+++++++++++
T Consensus         3 ~~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (262)
T 3pk0_A            3 GSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA   82 (262)
T ss_dssp             CCTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999988887766557999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+. .+.++...|
T Consensus        83 ~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y  161 (262)
T 3pk0_A           83 VEEFGGIDVVCANAGVFPDAPLATM-TPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHY  161 (262)
T ss_dssp             HHHHSCCSEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHH
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhh
Confidence            9999999999999999877666554 4588999999999999999999999997654 899999999986 788999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~  273 (287)
                      ++||+|+++|++.++.|++++ |+||+|+||+++|++....          .++..+...   +..++++|||+|++++|
T Consensus       162 ~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----------~~~~~~~~~~~~p~~r~~~p~dva~~v~~  231 (262)
T 3pk0_A          162 GATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN----------GEEYIASMARSIPAGALGTPEDIGHLAAF  231 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT----------CHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc----------CHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999987 9999999999999976532          123333333   33445689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       232 L~s~~~~~itG~~i  245 (262)
T 3pk0_A          232 LATKEAGYITGQAI  245 (262)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HhCccccCCcCCEE
Confidence            99999999999864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.3e-46  Score=328.30  Aligned_cols=245  Identities=29%  Similarity=0.389  Sum_probs=201.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.|++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...+ .++.++++|++|+++++++++++.
T Consensus        22 ~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~  100 (283)
T 3v8b_A           22 SMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLV  100 (283)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999999999998888886654 468999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC--CCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL--PPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~--~~~~~~~  196 (287)
                      +++|++|++|||||+... .++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..  +.++...
T Consensus       101 ~~~g~iD~lVnnAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~  179 (283)
T 3v8b_A          101 LKFGHLDIVVANAGINGVWAPIDD-LKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATA  179 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCBCCTTT-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHH
T ss_pred             HHhCCCCEEEECCCCCCCCCchhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchH
Confidence            999999999999998754 44444 45588999999999999999999999997654 8999999999987  7788999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC--CCCCCHHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL--LPVQPTEECAKAIVN  273 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~evA~~i~~  273 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++................+......+.  .++++|||||++++|
T Consensus       180 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~f  259 (283)
T 3v8b_A          180 YTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRF  259 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHHHHHHHHH
Confidence            9999999999999999999988 9999999999999997653211100000000001111122  456789999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       260 L~s~~a~~itG~~i  273 (283)
T 3v8b_A          260 LVSERARHVTGSPV  273 (283)
T ss_dssp             HTSGGGTTCCSCEE
T ss_pred             HcCccccCCcCCEE
Confidence            99999999999864

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=100.00  E-value=2.7e-46  Score=321.62  Aligned_cols=235  Identities=22%  Similarity=0.332  Sum_probs=207.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|+++++++++++.
T Consensus         6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A            6 SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999998888887665 469999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++ + .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++
T Consensus        85 ~~~g~id~lv~nAg~~~~~~~-~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  162 (256)
T 3gaf_A           85 DQFGKITVLVNNAGGGGPKPF-D-MPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGS  162 (256)
T ss_dssp             HHHSCCCEEEECCCCCCCCCT-T-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCC-C-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHH
Confidence            999999999999999876655 4 35588999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc---CCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---LLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~evA~~i~~l~  275 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++.....         .++..+....   ..++++|||+|++++||+
T Consensus       163 sKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---------~~~~~~~~~~~~p~~r~~~~~dva~~~~~L~  233 (256)
T 3gaf_A          163 SKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVL---------TPEIERAMLKHTPLGRLGEAQDIANAALFLC  233 (256)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHC---------CHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhcc---------CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence            9999999999999999987 99999999999999875422         1233333333   344568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       234 s~~~~~itG~~i  245 (256)
T 3gaf_A          234 SPAAAWISGQVL  245 (256)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CCcccCccCCEE
Confidence            999999999864

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=100.00  E-value=2e-46  Score=324.22  Aligned_cols=239  Identities=26%  Similarity=0.264  Sum_probs=208.5

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++.++++|++|+++++++++++
T Consensus        13 ~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   92 (266)
T 4egf_A           13 AGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA   92 (266)
T ss_dssp             CGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence            45567899999999999999999999999999999999999999998888886633457999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.++...|
T Consensus        93 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  171 (266)
T 4egf_A           93 AEAFGGLDVLVNNAGISHPQPVVDT-DPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAY  171 (266)
T ss_dssp             HHHHTSCSEEEEECCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHH
Confidence            9999999999999999877666554 458899999999999999999999999764  4799999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc---CCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---LLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~evA~~i~~  273 (287)
                      +++|+|+++|++.++.|++++ |+||+|+||+++|++......        .++..+....   ..++++|||||++++|
T Consensus       172 ~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~~p~~r~~~p~dva~~v~~  243 (266)
T 4egf_A          172 CTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG--------DEAKSAPMIARIPLGRFAVPHEVSDAVVW  243 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC--------SHHHHHHHHTTCTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc--------ChHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999987 999999999999998754321        1222233333   3445579999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       244 L~s~~~~~itG~~i  257 (266)
T 4egf_A          244 LASDAASMINGVDI  257 (266)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HhCchhcCccCcEE
Confidence            99999999999864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=100.00  E-value=4.6e-46  Score=318.73  Aligned_cols=234  Identities=24%  Similarity=0.296  Sum_probs=203.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++..    +...+++|++|+++++++++++.+
T Consensus         4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~   79 (248)
T 3op4_A            4 FMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD----NGKGMALNVTNPESIEAVLKAITD   79 (248)
T ss_dssp             TTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----GEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cceEEEEeCCCHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999999999999988887776643    467889999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++|
T Consensus        80 ~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  158 (248)
T 3op4_A           80 EFGGVDILVNNAGITRDNLLMRM-KEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAA  158 (248)
T ss_dssp             HHCCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHH
Confidence            99999999999999877665554 458899999999999999999999998754 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+|+++|++.++.|++++ |+||+|+||+++|++.+....       ...+......+..++.+|||+|++++||+++++
T Consensus       159 K~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~  231 (248)
T 3op4_A          159 KAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALND-------EQRTATLAQVPAGRLGDPREIASAVAFLASPEA  231 (248)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCH-------HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCH-------HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcc
Confidence            999999999999999987 999999999999998764210       011122223344556689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       232 ~~itG~~i  239 (248)
T 3op4_A          232 AYITGETL  239 (248)
T ss_dssp             TTCCSCEE
T ss_pred             CCccCcEE
Confidence            99999864

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=100.00  E-value=7.2e-46  Score=317.36  Aligned_cols=234  Identities=27%  Similarity=0.349  Sum_probs=204.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+++|++|+++++++++++.++
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI----GKKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999888877766    346889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++  .|+||++||..+..+.+++..|++|
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  156 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDV-DLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAA  156 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHH
Confidence            9999999999999877666554 558899999999999999999999999764  4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+|+++|++.++.|++++ |+||+|+||+++|++......      .......+...+..++++|||+|+.++||+++++
T Consensus       157 Kaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~------~~~~~~~~~~~~~~r~~~pedva~~v~~L~s~~~  230 (247)
T 3rwb_A          157 KGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPH------NEAFGFVEMLQAMKGKGQPEHIADVVSFLASDDA  230 (247)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGG------GGGHHHHHHHSSSCSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccCh------hHHHHHHhcccccCCCcCHHHHHHHHHHHhCccc
Confidence            999999999999999987 999999999999998764211      1112233333455667789999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       231 ~~itG~~i  238 (247)
T 3rwb_A          231 RWITGQTL  238 (247)
T ss_dssp             TTCCSCEE
T ss_pred             cCCCCCEE
Confidence            99999864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.5e-45  Score=319.56  Aligned_cols=241  Identities=25%  Similarity=0.349  Sum_probs=204.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|+++++++++++.+
T Consensus         3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (280)
T 3tox_A            3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDEALHEALVELAVR   81 (280)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999998888876544 4689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFYN  198 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y~  198 (287)
                      +++++|++|||||.... .++.+ .+.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+. .+.++...|+
T Consensus        82 ~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~  160 (280)
T 3tox_A           82 RFGGLDTAFNNAGALGAMGEISS-LSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYA  160 (280)
T ss_dssp             HHSCCCEEEECCCCCCSCSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHH
Confidence            99999999999998744 44444 45588999999999999999999999998754 899999999998 7889999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++.........   ....+......+..++++|||+|++++||+++
T Consensus       161 asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~---~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~  237 (280)
T 3tox_A          161 ASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAA---PETRGFVEGLHALKRIARPEEIAEAALYLASD  237 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCC---THHHHHHHTTSTTSSCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccC---HHHHHHHhccCccCCCcCHHHHHHHHHHHhCc
Confidence            99999999999999999887 999999999999998754221110   11112223333444566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       238 ~a~~itG~~i  247 (280)
T 3tox_A          238 GASFVTGAAL  247 (280)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCcCcEE
Confidence            9999999864

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=7e-46  Score=320.44  Aligned_cols=243  Identities=28%  Similarity=0.350  Sum_probs=207.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..+++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+ .++.++++|++|+++++++++++.++
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG-RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999888887665 46999999999999999999999999


Q ss_pred             cCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|.+++|+||++||..+..+.+++..|++||
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  164 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFAN-TTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQAKYGAYKMAK  164 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCCTTCHHHHHHH
T ss_pred             cCCCcEEEECCCCCCCCCCchh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCCCccHHHHHHH
Confidence            9999999999998643 44444 455889999999999999999999999987779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhhhcC---CCCCCHHHHHHHHHHhhc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQISL---LPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~p~evA~~i~~l~~  276 (287)
                      +|+++|++.++.|++++ |+||+|+||+++|++....+..... .....++..+.....   .++++|||+|++++||++
T Consensus       165 aa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s  244 (264)
T 3ucx_A          165 SALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMAS  244 (264)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcC
Confidence            99999999999999988 9999999999999987643211100 000123333333333   445579999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+||+.+
T Consensus       245 ~~~~~itG~~i  255 (264)
T 3ucx_A          245 DLASGITGQAL  255 (264)
T ss_dssp             GGGTTCCSCEE
T ss_pred             ccccCCCCCEE
Confidence            99999999864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=100.00  E-value=4.4e-45  Score=318.87  Aligned_cols=245  Identities=24%  Similarity=0.292  Sum_probs=203.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC----------------hhHHHHHHHHHHhcCCCeeEEEeec
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR----------------ERQLREVADQAELMGSPFALAIPAD  105 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~D  105 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+                .+.+++..+++...+ .++.++.+|
T Consensus         6 ~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D   84 (286)
T 3uve_A            6 TGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVD   84 (286)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECC
T ss_pred             CcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcC
Confidence            456899999999999999999999999999999999987                667777777776654 469999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       106 ~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                      ++|+++++++++++.++++++|++|||||...........+.++|++.+++|+.+++.++++++|.|.++  +|+||++|
T Consensus        85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  164 (286)
T 3uve_A           85 VRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTS  164 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            9999999999999999999999999999988766533334558899999999999999999999999764  48999999


Q ss_pred             CCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccchHHHHh--hhh
Q 042560          184 SAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVDQEIRD--VQI  256 (287)
Q Consensus       184 S~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~~~~~~--~~~  256 (287)
                      |..+..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|+|......    .+.......++..+  ...
T Consensus       165 S~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (286)
T 3uve_A          165 SVGGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMF  244 (286)
T ss_dssp             CGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTT
T ss_pred             chhhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHHHHHHhh
Confidence            99999999999999999999999999999999987 999999999999999764210    00000111111111  111


Q ss_pred             cC--CCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          257 SL--LPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       257 ~~--~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ..  .++++|||||++++||++++++|+||+.+
T Consensus       245 ~~~p~r~~~p~dvA~~v~fL~s~~a~~itG~~i  277 (286)
T 3uve_A          245 HTLPIPWVEPIDISNAVLFFASDEARYITGVTL  277 (286)
T ss_dssp             CSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hccCCCcCCHHHHHHHHHHHcCccccCCcCCEE
Confidence            12  45668999999999999999999999864

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.1e-45  Score=321.35  Aligned_cols=243  Identities=25%  Similarity=0.287  Sum_probs=201.9

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..++..++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+.+|++|+++++++++
T Consensus        20 ~sm~~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~   95 (277)
T 3gvc_A           20 GSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI----GCGAAACRVDVSDEQQIIAMVD   95 (277)
T ss_dssp             -------CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH----CSSCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCcceEEEecCCCHHHHHHHHH
Confidence            345667889999999999999999999999999999999999999888877766    3468899999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...
T Consensus        96 ~~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~  174 (277)
T 3gvc_A           96 ACVAAFGGVDKLVANAGVVHLASLIDT-TVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGA  174 (277)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCchh
Confidence            999999999999999999877666554 5588999999999999999999999997654 89999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh--hhhcCCCCCCHHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD--VQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~evA~~i~~  273 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++............  .+...+  ...+..++++|||+|++++|
T Consensus       175 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~pedvA~~v~~  252 (277)
T 3gvc_A          175 YGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGAL--GAGGARSMIARLQGRMAAPEEMAGIVVF  252 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC--------CCHHHHHHHHHSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhH--HHHhhhhhhhccccCCCCHHHHHHHHHH
Confidence            9999999999999999999987 999999999999998654321111000  000011  02234567889999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       253 L~s~~a~~itG~~i  266 (277)
T 3gvc_A          253 LLSDDASMITGTTQ  266 (277)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HcCCccCCccCcEE
Confidence            99999999999864

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=100.00  E-value=5.6e-46  Score=322.25  Aligned_cols=239  Identities=18%  Similarity=0.175  Sum_probs=208.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++||+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|+++++++++++.+
T Consensus        21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG-HDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999888887665 3689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++
T Consensus       100 ~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~as  178 (271)
T 4ibo_A          100 QGIDVDILVNNAGIQFRKPMIEL-ETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVA  178 (271)
T ss_dssp             HTCCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCCchhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHH
Confidence            99999999999999877666554 4588999999999999999999999997654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+|+++|++.++.|++++ |+||+|+||+++|++.......+     ...+......+..++++|||+|++++||+++++
T Consensus       179 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-----~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~  253 (271)
T 4ibo_A          179 KGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNP-----EFDAWVKARTPAKRWGKPQELVGTAVFLSASAS  253 (271)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCH-----HHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCH-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccc
Confidence            999999999999999987 99999999999999876432110     011222333455556789999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       254 ~~itG~~i  261 (271)
T 4ibo_A          254 DYVNGQII  261 (271)
T ss_dssp             TTCCSCEE
T ss_pred             cCCCCcEE
Confidence            99999864

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=100.00  E-value=3e-45  Score=315.46  Aligned_cols=233  Identities=22%  Similarity=0.225  Sum_probs=204.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++|+++||||++|||+++|++|+++|++|+++ +|+.+.+++..++++..+ .++.++.+|++|+++++++++++.+++
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG-VKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999986 899988888888887655 469999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++||+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  159 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMEL-EETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKA  159 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHH
Confidence            999999999998776666554 4588999999999999999999999998765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++.+....        .++..+   ...+..++++|||+|++++||++++
T Consensus       160 a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~  231 (258)
T 3oid_A          160 ALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN--------REDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSK  231 (258)
T ss_dssp             HHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT--------HHHHHHHHHHHCTTSSCBCHHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc--------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc
Confidence            9999999999999987 999999999999998764321        122222   3334455668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       232 ~~~itG~~i  240 (258)
T 3oid_A          232 ADMIRGQTI  240 (258)
T ss_dssp             TTTCCSCEE
T ss_pred             cCCccCCEE
Confidence            999999864

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-45  Score=319.16  Aligned_cols=246  Identities=24%  Similarity=0.314  Sum_probs=199.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ..+++++|+++||||++|||+++|++|+++|++|++++| +.+.+++..+++....+.++.++.+|++|+++++++++++
T Consensus        19 ~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~   98 (281)
T 3v2h_A           19 YFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMV   98 (281)
T ss_dssp             ---CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred             hhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999 6677788888777665567999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        99 ~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  177 (281)
T 3v2h_A           99 ADRFGGADILVNNAGVQFVEKIEDF-PVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYV  177 (281)
T ss_dssp             HHHTSSCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHHCCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHH
Confidence            9999999999999999877665554 4588999999999999999999999997654 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCcc-chHH----HHhhhhcCCCCCCHHHHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLE-VDQE----IRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++............. ..++    ......+..++.+|||+|++++
T Consensus       178 asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~  257 (281)
T 3v2h_A          178 AAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLAL  257 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTTCSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Confidence            99999999999999999987 9999999999999997654322111000 0111    1222233445568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++|+||+.+
T Consensus       258 ~L~s~~a~~itG~~i  272 (281)
T 3v2h_A          258 YLAGDDAAQITGTHV  272 (281)
T ss_dssp             HHHSSGGGGCCSCEE
T ss_pred             HHcCCCcCCCCCcEE
Confidence            999999999999864

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=100.00  E-value=2.1e-45  Score=315.29  Aligned_cols=230  Identities=22%  Similarity=0.337  Sum_probs=202.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC--CCHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV--SKVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~v~~~~~~~  119 (287)
                      ...+++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...++.++.++.+|+  +|.++++++++++
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999888888765555688999999  9999999999999


Q ss_pred             HHhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y  165 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSE-QNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAY  165 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHH
T ss_pred             HHhCCCCCEEEECCccCCCCCCccc-CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchh
Confidence            9999999999999998644 34444 45578999999999999999999999997755 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++||+|+++|++.++.|++++|+||+|+||+++|++........               ...++.+|||+|+.++||+++
T Consensus       166 ~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~~~~~~~~~---------------~~~~~~~p~dva~~~~~L~s~  230 (252)
T 3f1l_A          166 AASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTE---------------DPQKLKTPADIMPLYLWLMGD  230 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHHHHHHCTTC---------------CGGGSBCTGGGHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCchhhhhCCcc---------------chhccCCHHHHHHHHHHHcCc
Confidence            99999999999999999987799999999999999865322111               111356899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       231 ~~~~itG~~i  240 (252)
T 3f1l_A          231 DSRRKTGMTF  240 (252)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCCCCEE
Confidence            9999999864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=100.00  E-value=1.4e-44  Score=317.75  Aligned_cols=245  Identities=25%  Similarity=0.324  Sum_probs=203.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------------hhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR------------ERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+            .+.+++..++++..+ .++.++++|++|+
T Consensus        23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDVRDF  101 (299)
T ss_dssp             CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCH
Confidence            346889999999999999999999999999999999987            677777777776655 4699999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAG  187 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~  187 (287)
                      ++++++++++.++++++|++|||||...........+.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+
T Consensus       102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~  181 (299)
T 3t7c_A          102 DAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGG  181 (299)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhh
Confidence            999999999999999999999999988766523334558899999999999999999999998654  489999999999


Q ss_pred             CCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccchHHH--HhhhhcC--
Q 042560          188 WLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVDQEI--RDVQISL--  258 (287)
Q Consensus       188 ~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~~~~--~~~~~~~--  258 (287)
                      ..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++......    .+.......++.  .......  
T Consensus       182 ~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  261 (299)
T 3t7c_A          182 LRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLP  261 (299)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhcccC
Confidence            9999999999999999999999999999987 999999999999999764210    000000001111  1111122  


Q ss_pred             CCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          259 LPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       259 ~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .++++|||||++++||++++++|+||+.+
T Consensus       262 ~r~~~pedvA~~v~fL~s~~a~~itG~~i  290 (299)
T 3t7c_A          262 IPYVEPADISNAILFLVSDDARYITGVSL  290 (299)
T ss_dssp             CSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cCCCCHHHHHHHHHHHhCcccccCcCCEE
Confidence            45678999999999999999999999864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=100.00  E-value=6.9e-45  Score=316.87  Aligned_cols=246  Identities=22%  Similarity=0.297  Sum_probs=202.7

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------------hhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR------------ERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      .+.+++++|+++||||++|||+++|++|+++|++|++++|+            .+.+++..+.++..+ .++.++.+|++
T Consensus         3 ~~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   81 (281)
T 3s55_A            3 GSMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG-RRCISAKVDVK   81 (281)
T ss_dssp             ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTT
T ss_pred             CcccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC-CeEEEEeCCCC
Confidence            34567899999999999999999999999999999999997            556666666666554 46999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAA  186 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~  186 (287)
                      |+++++++++++.++++++|++|||||+....++.+. +.++|++.+++|+.+++.++++++|.|.++ .|+||++||..
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  160 (281)
T 3s55_A           82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEV-ESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSML  160 (281)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChh
Confidence            9999999999999999999999999999877666554 458899999999999999999999998764 48999999999


Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccC----cCCCccchHHHH---hhh-hc
Q 042560          187 GWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLN----KNGKLEVDQEIR---DVQ-IS  257 (287)
Q Consensus       187 ~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~----~~~~~~~~~~~~---~~~-~~  257 (287)
                      +..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++....+..    +.......++..   ... ..
T Consensus       161 ~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (281)
T 3s55_A          161 GHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQ  240 (281)
T ss_dssp             GGSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSS
T ss_pred             hcCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHHHhhhcc
Confidence            99999999999999999999999999999887 9999999999999997642100    000000011111   111 11


Q ss_pred             CCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          258 LLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       258 ~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ..++.+|||+|++++||++++++|+||+.+
T Consensus       241 ~~~~~~p~dvA~~v~~L~s~~~~~itG~~i  270 (281)
T 3s55_A          241 YAPFLKPEEVTRAVLFLVDEASSHITGTVL  270 (281)
T ss_dssp             SCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CcCCCCHHHHHHHHHHHcCCcccCCCCCEE
Confidence            255678999999999999999999999864

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=100.00  E-value=2.5e-45  Score=317.84  Aligned_cols=239  Identities=28%  Similarity=0.347  Sum_probs=204.0

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      .+.|+.+++++|+++||||++|||+++|++|+++|++|++++| +.+..++..++++..+ .++.++.+|++|+++++++
T Consensus        18 ~~~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~v~~~   96 (269)
T 4dmm_A           18 GSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG-GEAFAVKADVSQESEVEAL   96 (269)
T ss_dssp             ------CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHH
T ss_pred             cccccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHH
Confidence            3446678899999999999999999999999999999999998 6667777777776654 4689999999999999999


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCC
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~  194 (287)
                      ++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++ .|+||++||..+..+.++.
T Consensus        97 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~  175 (269)
T 4dmm_A           97 FAAVIERWGRLDVLVNNAGITRDTLLLRM-KRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQ  175 (269)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTC
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCc
Confidence            99999999999999999999877665554 458899999999999999999999998764 4899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ..|++||+|+++|++.++.|++++ |+||+|+||+++|++....          ..+......+..++++|||+|++++|
T Consensus       176 ~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----------~~~~~~~~~p~~r~~~~~dvA~~v~~  245 (269)
T 4dmm_A          176 ANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSEL----------AAEKLLEVIPLGRYGEAAEVAGVVRF  245 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHH----------HHHHHGGGCTTSSCBCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccc----------cHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999987 9999999999999987532          11222333445556789999999999


Q ss_pred             hhcc-CCccccCCCC
Q 042560          274 SACR-GDRYLTQPSW  287 (287)
Q Consensus       274 l~~~-~~~~itG~~~  287 (287)
                      |+++ .++|+||+.+
T Consensus       246 l~s~~~~~~itG~~i  260 (269)
T 4dmm_A          246 LAADPAAAYITGQVI  260 (269)
T ss_dssp             HHHCGGGGGCCSCEE
T ss_pred             HhCCcccCCCcCCEE
Confidence            9998 7899999863

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=100.00  E-value=4.3e-45  Score=317.99  Aligned_cols=251  Identities=21%  Similarity=0.216  Sum_probs=204.4

Q ss_pred             hhhhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           35 FVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        35 ~~~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      +...+.....+++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.+++++
T Consensus        12 ~~~~~~~~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~   90 (279)
T 3sju_A           12 SGLVPRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG-HDVDGSSCDVTSTDEVHA   90 (279)
T ss_dssp             -------------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHH
T ss_pred             cccCCCcccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHH
Confidence            3344455566789999999999999999999999999999999999999999888887664 469999999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHH--HHhcC-CCEEEEEcCCCCCCCC
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIP--YLKQT-KGKIIVVASAAGWLPP  191 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~l~~~-~g~iv~isS~~~~~~~  191 (287)
                      +++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|  .|+++ .|+||++||..+..+.
T Consensus        91 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~  169 (279)
T 3sju_A           91 AVAAAVERFGPIGILVNSAGRNGGGETADL-DDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV  169 (279)
T ss_dssp             HHHHHHHHHCSCCEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC
T ss_pred             HHHHHHHHcCCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC
Confidence            999999999999999999999877666554 4588999999999999999999999  46544 4899999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHHhhhhcCCC---CCCHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRDVQISLLP---VQPTEE  266 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~p~e  266 (287)
                      ++...|++||+|+++|++.++.|++++ |+||+|+||+++|++............ ...++..+......|   +++|||
T Consensus       170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ped  249 (279)
T 3sju_A          170 MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEE  249 (279)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTTSSCBCHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCCHHH
Confidence            999999999999999999999999987 999999999999998764322111111 123444444444444   457999


Q ss_pred             HHHHHHHhhccCCccccCCCC
Q 042560          267 CAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       267 vA~~i~~l~~~~~~~itG~~~  287 (287)
                      ||++++||++++++|+||+.+
T Consensus       250 vA~~v~~L~s~~a~~itG~~i  270 (279)
T 3sju_A          250 VAGLVGYLVTDAAASITAQAL  270 (279)
T ss_dssp             HHHHHHHHTSSGGGGCCSCEE
T ss_pred             HHHHHHHHhCccccCcCCcEE
Confidence            999999999999999999864

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=100.00  E-value=1.8e-45  Score=318.18  Aligned_cols=239  Identities=26%  Similarity=0.316  Sum_probs=193.7

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      .-+.+.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++.+|++|++++++++
T Consensus        17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~   92 (266)
T 3grp_A           17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL----GKDVFVFSANLSDRKSIKQLA   92 (266)
T ss_dssp             ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CSSEEEEECCTTSHHHHHHHH
T ss_pred             CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEeecCCHHHHHHHH
Confidence            3445567889999999999999999999999999999999999998888776554    246899999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++..
T Consensus        93 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~  171 (266)
T 3grp_A           93 EVAEREMEGIDILVNNAGITRDGLFVRM-QDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQT  171 (266)
T ss_dssp             HHHHHHHTSCCEEEECCCCC-----CCC-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CHH
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCch
Confidence            9999999999999999999876665554 4478999999999999999999999987644 8999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|++||+|+++|++.++.|++++ |+||+|+||+++|++.....       ....+......+..++++|||+|++++||
T Consensus       172 ~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~-------~~~~~~~~~~~p~~r~~~~edvA~~v~~L  244 (266)
T 3grp_A          172 NYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLN-------EKQKEAIMAMIPMKRMGIGEEIAFATVYL  244 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCC-------HHHHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccC-------HHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999987 99999999999999876421       00112222233444556799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       245 ~s~~~~~itG~~i  257 (266)
T 3grp_A          245 ASDEAAYLTGQTL  257 (266)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCccccCccCCEE
Confidence            9999999999864

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=100.00  E-value=6.1e-46  Score=323.00  Aligned_cols=243  Identities=21%  Similarity=0.230  Sum_probs=206.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++.++.+|++|+++++++++++
T Consensus        20 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   99 (277)
T 4fc7_A           20 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQA   99 (277)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            44566899999999999999999999999999999999999999888888776544457999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++ +|+||++||..+..+.++...|+
T Consensus       100 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  178 (277)
T 4fc7_A          100 LKEFGRIDILINCAAGNFLCPAGAL-SFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAG  178 (277)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHH
T ss_pred             HHHcCCCCEEEECCcCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHH
Confidence            9999999999999998776665554 558899999999999999999999988654 58999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++........    ....+......+..++++|||+|++++||+++
T Consensus       179 asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~----~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~  254 (277)
T 4fc7_A          179 SAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGP----QASLSTKVTASPLQRLGNKTEIAHSVLYLASP  254 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCC----HHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCC----HHHHHHHhccCCCCCCcCHHHHHHHHHHHcCC
Confidence            99999999999999999987 99999999999998643221110    00111222233445566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       255 ~~~~itG~~i  264 (277)
T 4fc7_A          255 LASYVTGAVL  264 (277)
T ss_dssp             GGTTCCSCEE
T ss_pred             ccCCcCCCEE
Confidence            9999999864

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.6e-45  Score=317.35  Aligned_cols=239  Identities=25%  Similarity=0.286  Sum_probs=194.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +..|.+++|+++||||++|||+++|++|+++|++|+++ .|+.+..++..++++..+ .++.++.+|++|++++++++++
T Consensus        20 ~~~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~   98 (267)
T 3u5t_A           20 FQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG-GKALTAQADVSDPAAVRRLFAT   98 (267)
T ss_dssp             -------CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHH
Confidence            44467789999999999999999999999999999987 456667777777776655 4689999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +.++++++|++|||||+....++.+. +.++|++.+++|+.+++.+++.++|.|++ +|+||++||..+..+.++...|+
T Consensus        99 ~~~~~g~iD~lvnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~  176 (267)
T 3u5t_A           99 AEEAFGGVDVLVNNAGIMPLTTIAET-GDAVFDRVIAVNLKGTFNTLREAAQRLRV-GGRIINMSTSQVGLLHPSYGIYA  176 (267)
T ss_dssp             HHHHHSCEEEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCTHHHHCCTTCHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCeEEEEeChhhccCCCCchHHH
Confidence            99999999999999999877666554 45789999999999999999999999965 68999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++.......      ...+......+..++++|||+|++++||+++
T Consensus       177 asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~------~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~  250 (267)
T 3u5t_A          177 AAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSD------EVRDRFAKLAPLERLGTPQDIAGAVAFLAGP  250 (267)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------------CHHHHHTSSTTCSCBCHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCH------HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            99999999999999999988 9999999999999987542110      0112223333444566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       251 ~~~~itG~~i  260 (267)
T 3u5t_A          251 DGAWVNGQVL  260 (267)
T ss_dssp             TTTTCCSEEE
T ss_pred             cccCccCCEE
Confidence            9999999853

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=100.00  E-value=3e-45  Score=320.98  Aligned_cols=237  Identities=24%  Similarity=0.349  Sum_probs=208.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ...+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+..++.++.+|++|+++++++++++
T Consensus        34 ~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  113 (293)
T 3rih_A           34 KVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV  113 (293)
T ss_dssp             CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999998888887766457999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+. .+.++...|
T Consensus       114 ~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y  192 (293)
T 3rih_A          114 VDAFGALDVVCANAGIFPEARLDTM-TPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHY  192 (293)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHH
Confidence            9999999999999999877666554 4588999999999999999999999997654 899999999996 788999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~  273 (287)
                      ++||+|+++|++.++.|++++ |+||+|+||+++|++.....          ++..+...   +..++++|+|+|+.++|
T Consensus       193 ~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~----------~~~~~~~~~~~p~~r~~~p~dvA~~v~f  262 (293)
T 3rih_A          193 GASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG----------EEYISGMARSIPMGMLGSPVDIGHLAAF  262 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC----------HHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc----------HHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999987 99999999999999765321          23333333   34445689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       263 L~s~~a~~itG~~i  276 (293)
T 3rih_A          263 LATDEAGYITGQAI  276 (293)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HhCccccCCCCCEE
Confidence            99999999999864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=100.00  E-value=2e-45  Score=316.02  Aligned_cols=234  Identities=22%  Similarity=0.326  Sum_probs=202.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++.+|++|.++++++++++.++
T Consensus         4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999888777765    236899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|++||+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  157 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQV-SEASYDRQFAVNTKGAFFTVQRLTPLIRE-GGSIVFTSSVADEGGHPGMSVYSASKA  157 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCGGGSSBCTTBHHHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CCEEEEECChhhcCCCCCchHHHHHHH
Confidence            9999999999999877666554 45889999999999999999999999865 689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHH---HHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQE---IRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++.......+    ...++   ......+..++++|||+|++++||+++ 
T Consensus       158 a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~----~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-  232 (255)
T 4eso_A          158 ALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITE----AERAEFKTLGDNITPMKRNGTADEVARAVLFLAFE-  232 (255)
T ss_dssp             HHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCH----HHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCCh----hhHHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCc-
Confidence            9999999999999987 99999999999999875321111    01112   222334555667899999999999998 


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       233 ~~~itG~~i  241 (255)
T 4eso_A          233 ATFTTGAKL  241 (255)
T ss_dssp             CTTCCSCEE
T ss_pred             CcCccCCEE
Confidence            899999864

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=100.00  E-value=3.8e-45  Score=317.97  Aligned_cols=240  Identities=25%  Similarity=0.316  Sum_probs=204.5

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ....|++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++..+++|++|++++++++++
T Consensus        19 ~~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~   94 (277)
T 4dqx_A           19 YFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI----GSKAFGVRVDVSSAKDAESMVEK   94 (277)
T ss_dssp             ---CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999998888777664    24688999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|
T Consensus        95 ~~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  173 (277)
T 4dqx_A           95 TTAKWGRVDVLVNNAGFGTTGNVVTI-PEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAY  173 (277)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhH
Confidence            99999999999999998877666554 4588999999999999999999999998754 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHH---HhhhhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEI---RDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ++||+|+++|++.++.|++++ |+||+|+||+++|++.........    ...+.   .....+..++++|||+|+++++
T Consensus       174 ~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~pedvA~~v~~  249 (277)
T 4dqx_A          174 VASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAK----DPAKLRSDFNARAVMDRMGTAEEIAEAMLF  249 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCS----CHHHHHHHHHTTSTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhccccc----chhHHHHHHHhcCcccCCcCHHHHHHHHHH
Confidence            999999999999999999987 999999999999998443221111    11222   2223344556689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       250 L~s~~~~~itG~~i  263 (277)
T 4dqx_A          250 LASDRSRFATGSIL  263 (277)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HhCCccCCCcCCEE
Confidence            99999999999864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=100.00  E-value=9.5e-45  Score=316.12  Aligned_cols=241  Identities=22%  Similarity=0.315  Sum_probs=198.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++.    +.++.++.+|++|.++++++++++.++
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH----GGNAVGVVGDVRSLQDQKRAAERCLAA   76 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc----CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999999999998887765543    346899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCC----CCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTD----ITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||||+..........+    .+.|++.+++|+.+++.++++++|.|.+++|+||++||..+..+.++...|+
T Consensus        77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  156 (281)
T 3zv4_A           77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPNGGGPLYT  156 (281)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSSSSCHHHH
T ss_pred             cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCCCCCchhH
Confidence            999999999999875433222112    2358889999999999999999999987779999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCc---cchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          199 ASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKL---EVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +||+|+++|++.++.|++++||||+|+||+++|+|............   ....+......+..++++|||+|++++||+
T Consensus       157 asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~  236 (281)
T 3zv4_A          157 ATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFA  236 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhh
Confidence            99999999999999999877999999999999998754322111110   011233334445566778999999999999


Q ss_pred             c-cCCccccCCCC
Q 042560          276 C-RGDRYLTQPSW  287 (287)
Q Consensus       276 ~-~~~~~itG~~~  287 (287)
                      + +.++|+||+.+
T Consensus       237 s~~~~~~itG~~i  249 (281)
T 3zv4_A          237 TRGDSLPATGALL  249 (281)
T ss_dssp             STTTSTTCSSCEE
T ss_pred             cccccccccCcEE
Confidence            9 78899999864

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=100.00  E-value=6.6e-45  Score=313.11  Aligned_cols=239  Identities=28%  Similarity=0.387  Sum_probs=202.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++.++++|++|+++++++++++.++
T Consensus         2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999998888876544 46899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHH-hcC-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQT-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l-~~~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.| +++ +|+||++||..+..+.++...|++|
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  159 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDL-SVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAA  159 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHH
Confidence            9999999999998776665554 558899999999999999999999998 433 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          201 KAAKIALYETLRVEFG-GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       201 Kaal~~~~~~la~e~~-~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+|+++|++.++.|++ ++ |+||+|+||+++|++.........   . ..+......+..++++|||+|+++++|++++
T Consensus       160 Kaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~---~-~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~  235 (257)
T 3imf_A          160 KAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISE---E-MAKRTIQSVPLGRLGTPEEIAGLAYYLCSDE  235 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC----------C-CSHHHHTTSTTCSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCH---H-HHHHHHhcCCCCCCcCHHHHHHHHHHHcCch
Confidence            9999999999999997 54 999999999999997653211110   0 0111222234445668999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       236 ~~~itG~~i  244 (257)
T 3imf_A          236 AAYINGTCM  244 (257)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCccCCEE
Confidence            999999864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.7e-45  Score=315.88  Aligned_cols=238  Identities=23%  Similarity=0.302  Sum_probs=192.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|+++ +|+.+..++..++++..+ .++.++.+|++|+++++++++++
T Consensus         2 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            2 SLQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998 566677777777776654 46899999999999999999999


Q ss_pred             HHhcCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~~~~~~Y  197 (287)
                      .++++++|++|||||.. ...++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+. .+.++...|
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~Y  158 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAE-MDEAFWHQVLDVNLTSLFLTAKTALPKMAK-GGAIVTFSSQAGRDGGGPGALAY  158 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTT-CCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCHHHHHCCSTTCHHH
T ss_pred             HHHhCCCCEEEECCCccCCCCChhh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEcCHHhccCCCCCcHHH
Confidence            99999999999999987 3344444 455789999999999999999999999976 7899999999988 788899999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++||+|+++|++.++.|++++|+||+|+||+++|++.......+      ..+......+..++++|||+|++++||+++
T Consensus       159 ~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~------~~~~~~~~~p~~r~~~pedva~~v~~L~s~  232 (259)
T 3edm_A          159 ATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPE------VRERVAGATSLKREGSSEDVAGLVAFLASD  232 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------CCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChH------HHHHHHhcCCCCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999999987799999999999999876532111      111122223444566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.|
T Consensus       233 ~~~~itG~~i  242 (259)
T 3edm_A          233 DAAYVTGACY  242 (259)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCccCCEE
Confidence            9999999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=100.00  E-value=5.7e-45  Score=317.45  Aligned_cols=241  Identities=20%  Similarity=0.238  Sum_probs=204.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..++++..+.  .++.++.+|++|++++++++++
T Consensus         5 m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A            5 MQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999998888876543  2789999999999999999999


Q ss_pred             HHHhcCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          119 TMEHFGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      +.++++++|++|||||.. ...++.+ .+.++|++.+++|+.+++.++++++|.|.+++ |+||++||..+..+.++...
T Consensus        85 ~~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  163 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAGGSENIGPITQ-VDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGA  163 (281)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTH
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChh
Confidence            999999999999999984 3344444 45588999999999999999999999997654 89999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++........     ...+......+..++++|||+|+++++|+
T Consensus       164 Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~-----~~~~~~~~~~p~~r~~~~~dva~~~~~l~  238 (281)
T 3svt_A          164 YGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESA-----ELSSDYAMCTPLPRQGEVEDVANMAMFLL  238 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCH-----HHHHHHHHHCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCH-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999987 99999999999999876431110     01122223334555668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       239 s~~~~~itG~~~  250 (281)
T 3svt_A          239 SDAASFVTGQVI  250 (281)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CcccCCCCCCEE
Confidence            999999999863

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=100.00  E-value=2e-45  Score=318.59  Aligned_cols=236  Identities=25%  Similarity=0.328  Sum_probs=204.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..++++..+ .++..+.+|++|.++++++++++.++
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG-LEGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999988888887655 35888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++ +|+||++||..+..+.++...|++||
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  181 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRM-KDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAK  181 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHHHH
Confidence            9999999999999877665554 458899999999999999999999998654 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|+++|++.++.|++++ |+||+|+||+++|++.....       ....+......+..++++|||+|++++||++++++
T Consensus       182 aa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-------~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~  254 (270)
T 3ftp_A          182 AGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLP-------QEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAG  254 (270)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSC-------HHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcC-------HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcC
Confidence            99999999999999987 99999999999999865321       00111222223344455899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+||+.+
T Consensus       255 ~itG~~i  261 (270)
T 3ftp_A          255 YITGTTL  261 (270)
T ss_dssp             TCCSCEE
T ss_pred             CccCcEE
Confidence            9999864

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=100.00  E-value=3.7e-45  Score=318.00  Aligned_cols=244  Identities=27%  Similarity=0.368  Sum_probs=202.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-------------ChhHHHHHHHHHHhcCCCeeEEEeecCCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-------------RERQLREVADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|             +.+.+++..+++...+ .++..+.+|++|
T Consensus         6 ~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~   84 (277)
T 3tsc_A            6 AGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-RRIVAAVVDTRD   84 (277)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTC
T ss_pred             ccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence            34689999999999999999999999999999999998             6677777777776654 469999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCC
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAA  186 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~  186 (287)
                      +++++++++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..
T Consensus        85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  163 (277)
T 3tsc_A           85 FDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDI-TPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA  163 (277)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence            999999999999999999999999999877665554 558899999999999999999999998764  48999999999


Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC-ccchHHHHhhhhcC--CCCC
Q 042560          187 GWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK-LEVDQEIRDVQISL--LPVQ  262 (287)
Q Consensus       187 ~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~  262 (287)
                      +..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++........... ....++..+.....  .+++
T Consensus       164 ~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~  243 (277)
T 3tsc_A          164 GMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVA  243 (277)
T ss_dssp             GTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCB
T ss_pred             hCCCCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHHHhhhccCCCCC
Confidence            99999999999999999999999999999987 99999999999999875311000000 00001111111111  1467


Q ss_pred             CHHHHHHHHHHhhccCCccccCCCC
Q 042560          263 PTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|||+|++++||++++++|+||+.+
T Consensus       244 ~pedvA~~v~~L~s~~~~~itG~~i  268 (277)
T 3tsc_A          244 EPEDIADTVCWLASDESRKVTAAQI  268 (277)
T ss_dssp             CHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CHHHHHHHHHHHhCccccCCcCCEE
Confidence            8999999999999999999999864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=100.00  E-value=1.1e-44  Score=313.99  Aligned_cols=233  Identities=24%  Similarity=0.289  Sum_probs=200.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++.+|++|+++++++++++.+
T Consensus         6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (271)
T 3tzq_B            6 TAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV----GRGAVHHVVDLTNEVSVRALIDFTID   81 (271)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH----CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999888777666    24688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++++|++|||||.... .......+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++
T Consensus        82 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~a  161 (271)
T 3tzq_B           82 TFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYAC  161 (271)
T ss_dssp             HHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHH
Confidence            99999999999998733 22222345578999999999999999999999997655 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~  275 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++.....         .++..+..   .+..++++|||+|++++||+
T Consensus       162 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~---------~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~  232 (271)
T 3tzq_B          162 TKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL---------PQPIVDIFATHHLAGRIGEPHEIAELVCFLA  232 (271)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------------CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC---------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999987 99999999999999876321         12233333   33445568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       233 s~~~~~itG~~i  244 (271)
T 3tzq_B          233 SDRAAFITGQVI  244 (271)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CcccCCcCCCEE
Confidence            999999999864

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=100.00  E-value=1.1e-44  Score=313.90  Aligned_cols=246  Identities=23%  Similarity=0.319  Sum_probs=205.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .....++++|+++||||++|||+++|++|+++|++|++++++ .+..++..++++..+ .++.++.+|++|+++++++++
T Consensus        10 ~~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           10 TYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             -CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHH
T ss_pred             ccCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHH
Confidence            345567899999999999999999999999999999998764 566777777776654 468999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC-CCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA-GWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~-~~~~~~~~~~  196 (287)
                      ++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++ +|+||++||.. +..+.++...
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~  166 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDV-TEEEFDRVFSLNTRGQFFVAREAYRHLTE-GGRIVLTSSNTSKDFSVPKHSL  166 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHCCT-TCEEEEECCTTTTTCCCTTCHH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCeEEEEeCchhccCCCCCCch
Confidence            999999999999999999877666554 55889999999999999999999999976 78999999988 5678899999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCc--CCCccchHHHHh---hhhcCCCCCCHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNK--NGKLEVDQEIRD---VQISLLPVQPTEECAKA  270 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~p~evA~~  270 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++........  .......++..+   ...+..++++|||||++
T Consensus       167 Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~  246 (270)
T 3is3_A          167 YSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANV  246 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence            9999999999999999999987 99999999999999875321110  000111222222   33345556679999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      ++||++++++|+||+.+
T Consensus       247 v~~L~s~~~~~itG~~i  263 (270)
T 3is3_A          247 VGFLVSKEGEWVNGKVL  263 (270)
T ss_dssp             HHHHTSGGGTTCCSCEE
T ss_pred             HHHHcCCccCCccCcEE
Confidence            99999999999999864

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=100.00  E-value=8.9e-45  Score=315.50  Aligned_cols=237  Identities=30%  Similarity=0.386  Sum_probs=205.3

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...+. ++.++++|++|+++++++++++.
T Consensus        26 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~  104 (276)
T 3r1i_A           26 DLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMT  104 (276)
T ss_dssp             GGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999988888876553 68899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCC--CCChh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPP--PRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~--~~~~~  196 (287)
                      ++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.+++  |+||++||..+..+.  ++...
T Consensus       105 ~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~  183 (276)
T 3r1i_A          105 GELGGIDIAVCNAGIVSVQAMLDM-PLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSH  183 (276)
T ss_dssp             HHHSCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcch
Confidence            999999999999999877666554 4588999999999999999999999997653  899999999987654  36789


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++.+...        ...+......+..++++|||+|++++||+
T Consensus       184 Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~--------~~~~~~~~~~p~~r~~~pedvA~~v~fL~  255 (276)
T 3r1i_A          184 YCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLA--------DYHALWEPKIPLGRMGRPEELTGLYLYLA  255 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGG--------GGHHHHGGGSTTSSCBCGGGSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccch--------HHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence            9999999999999999999987 99999999999999876421        11222233334455668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       256 s~~~~~itG~~i  267 (276)
T 3r1i_A          256 SAASSYMTGSDI  267 (276)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CccccCccCcEE
Confidence            999999999864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.2e-44  Score=312.16  Aligned_cols=238  Identities=27%  Similarity=0.329  Sum_probs=204.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .+..+++++|+++||||++|||+++|++|+++|++|++++++ .+..++..++++..+ .++.++.+|++|+++++++++
T Consensus        23 mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~  101 (271)
T 3v2g_A           23 MMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG-GRAVAIRADNRDAEAIEQAIR  101 (271)
T ss_dssp             HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHH
T ss_pred             hccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHH
Confidence            356678999999999999999999999999999999998665 466777777776654 468999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-CCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-PPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-~~~~~~  196 (287)
                      ++.+++|++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+ .++...
T Consensus       102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~m~~-~g~iv~isS~~~~~~~~~~~~~  179 (271)
T 3v2g_A          102 ETVEALGGLDILVNSAGIWHSAPLEET-TVADFDEVMAVNFRAPFVAIRSASRHLGD-GGRIITIGSNLAELVPWPGISL  179 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHCCT-TCEEEEECCGGGTCCCSTTCHH
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCEEEEEeChhhccCCCCCchH
Confidence            999999999999999999877666554 55889999999999999999999999965 689999999877655 788999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+++|+|+++|++.++.|++++ |+||+|+||+++|++.....        ...+......+..++++|||+|++++||+
T Consensus       180 Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~--------~~~~~~~~~~~~~r~~~pedvA~~v~fL~  251 (271)
T 3v2g_A          180 YSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADG--------DHAEAQRERIATGSYGEPQDIAGLVAWLA  251 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSC--------SSHHHHHHTCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccc--------hhHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999987 99999999999999875311        11222333345556678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       252 s~~~~~itG~~i  263 (271)
T 3v2g_A          252 GPQGKFVTGASL  263 (271)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CcccCCccCCEE
Confidence            999999999864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-45  Score=319.37  Aligned_cols=236  Identities=28%  Similarity=0.372  Sum_probs=203.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +++++|+++||||++|||+++|++|+++|+   +|++++|+.+.++++.+++... ++.++.++.+|++|++++++++++
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~  108 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN  108 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence            467899999999999999999999999998   9999999999999988888664 345799999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChh
Q 042560          119 TMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +.++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...
T Consensus       109 ~~~~~g~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~  187 (287)
T 3rku_A          109 LPQEFKDIDILVNNAGKALGSDRVGQ-IATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSI  187 (287)
T ss_dssp             SCGGGCSCCEEEECCCCCCCCCCTTS-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHH
T ss_pred             HHHhcCCCCEEEECCCcCCCCCCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCch
Confidence            99999999999999998763 33434 4558899999999999999999999999764 489999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++.......      ..++..+......|+ +|||||++++||+
T Consensus       188 Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~------~~~~~~~~~~~~~p~-~pedvA~~v~~l~  260 (287)
T 3rku_A          188 YCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRG------NEEQAKNVYKDTTPL-MADDVADLIVYAT  260 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTT------CHHHHHHHHTTSCCE-EHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccC------cHHHHHHhhcccCCC-CHHHHHHHHHHHh
Confidence            9999999999999999999987 9999999999999985422111      112223333333444 8999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++++++++|+.
T Consensus       261 s~~~~~i~g~~  271 (287)
T 3rku_A          261 SRKQNTVIADT  271 (287)
T ss_dssp             TSCTTEEEEEE
T ss_pred             CCCCCeEecce
Confidence            99999999975

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.3e-44  Score=312.54  Aligned_cols=237  Identities=22%  Similarity=0.265  Sum_probs=185.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++||||++|||+++|++|+++|++|++++| +.+.+++..+++...+ .++.++++|++|+++++++++++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG-ARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999996 7777788877776654 4699999999999999999999999


Q ss_pred             hcCCccEEEEccccC--CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCCh
Q 042560          122 HFGRLDHLVTNAGVV--PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       122 ~~~~idvli~nag~~--~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~~  195 (287)
                      +++++|++|||||..  ...++.+ .+.++|++.+++|+.+++.++++++|.|.++    +|+||++||..+..+.++..
T Consensus       104 ~~g~iD~lvnnAg~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~  182 (280)
T 4da9_A          104 EFGRIDCLVNNAGIASIVRDDFLD-LKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERL  182 (280)
T ss_dssp             HHSCCCEEEEECC------CCGGG-CCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CCH
T ss_pred             HcCCCCEEEECCCccccCCCChhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCcc
Confidence            999999999999984  3444444 3458899999999999999999999999653    47999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|++||+|+++|++.++.|++++ |+||+|+||+++|++........      .+...+...+..++++|||||++++||
T Consensus       183 ~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~------~~~~~~~~~p~~r~~~pedvA~~v~~L  256 (280)
T 4da9_A          183 DYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKY------DGLIESGLVPMRRWGEPEDIGNIVAGL  256 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhH------HHHHhhcCCCcCCcCCHHHHHHHHHHH
Confidence            99999999999999999999988 99999999999999876532110      111111133445567899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       257 ~s~~~~~itG~~i  269 (280)
T 4da9_A          257 AGGQFGFATGSVI  269 (280)
T ss_dssp             HTSTTGGGTTCEE
T ss_pred             hCccccCCCCCEE
Confidence            9999999999864

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=100.00  E-value=2.2e-44  Score=307.82  Aligned_cols=231  Identities=26%  Similarity=0.366  Sum_probs=201.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++|+++||||++|||+++|++|+++|++|++++| +.+..++..++++..+ .++.++++|++|.++++++++++.+++
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG-VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999887 5577777777776654 468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++||+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  159 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRM-KEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKA  159 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHH
Confidence            999999999999877665554 458899999999999999999999998754 489999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++.+..          .++..+...   +..++++|||+|+++++|++++
T Consensus       160 a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----------~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~  229 (246)
T 3osu_A          160 GVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL----------SDELKEQMLTQIPLARFGQDTDIANTVAFLASDK  229 (246)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS----------CHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc----------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcc
Confidence            9999999999999987 9999999999999987642          123333333   3344557999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       230 ~~~itG~~i  238 (246)
T 3osu_A          230 AKYITGQTI  238 (246)
T ss_dssp             GTTCCSCEE
T ss_pred             ccCCCCCEE
Confidence            999999864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=1.2e-44  Score=315.21  Aligned_cols=242  Identities=26%  Similarity=0.313  Sum_probs=202.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-------------ChhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-------------RERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      ...+++||+++||||++|||+++|++|+++|++|++++|             +.+++++..++++..+ .++.++.+|++
T Consensus         9 ~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   87 (280)
T 3pgx_A            9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-RKALTRVLDVR   87 (280)
T ss_dssp             --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTT
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEEcCCC
Confidence            345689999999999999999999999999999999998             6777888777776654 46899999999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASA  185 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~  185 (287)
                      |+++++++++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++  +|+||++||.
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (280)
T 3pgx_A           88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWEL-TDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSS  166 (280)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcch
Confidence            9999999999999999999999999999877666554 458899999999999999999999999764  5899999999


Q ss_pred             CCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh-----hhcCC
Q 042560          186 AGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV-----QISLL  259 (287)
Q Consensus       186 ~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  259 (287)
                      .+..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++.......+.  ....++..+.     ..+. 
T Consensus       167 ~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-  243 (280)
T 3pgx_A          167 AGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEI--FARHPSFVHSFPPMPVQPN-  243 (280)
T ss_dssp             GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHH--HHHCGGGGGGSCCBTTBCS-
T ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhh--hhcCchhhhhhhhcccCCC-
Confidence            999999999999999999999999999999987 999999999999998753100000  0000011111     1112 


Q ss_pred             CCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          260 PVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       260 ~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ++.+|||+|++++||++++++|+||+.+
T Consensus       244 r~~~p~dvA~~v~~L~s~~~~~itG~~i  271 (280)
T 3pgx_A          244 GFMTADEVADVVAWLAGDGSGTLTGTQI  271 (280)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTTCSSCEE
T ss_pred             CCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            4568999999999999999999999864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=100.00  E-value=2.2e-44  Score=310.19  Aligned_cols=240  Identities=24%  Similarity=0.344  Sum_probs=203.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++.++++|++|+++++++++++.++
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----GPAAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999888877766    235889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.++...|++|
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  158 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEI-TRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCAT  158 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHH
Confidence            9999999999999877665554 458899999999999999999999998664  4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc---C-cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL---N-KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+|+++|++.++.|++++ |+||+|+||+++|++......   . .........+......+..++++|||+|++++||+
T Consensus       159 K~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~  238 (259)
T 4e6p_A          159 KAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLA  238 (259)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999887 999999999999998654200   0 00000011222333345556678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       239 s~~~~~itG~~i  250 (259)
T 4e6p_A          239 SAESDYIVSQTY  250 (259)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CCccCCCCCCEE
Confidence            999999999863

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.9e-44  Score=308.28  Aligned_cols=232  Identities=14%  Similarity=0.120  Sum_probs=189.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|+++++++++++.++
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            56789999999999999999999999999999999999999999988887765 47999999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++||
T Consensus        82 -g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  159 (252)
T 3h7a_A           82 -APLEVTIFNVGANVNFPILET-TDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAK  159 (252)
T ss_dssp             -SCEEEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHH
T ss_pred             -CCceEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHH
Confidence             999999999999877666554 4588999999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEE-EEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGD-IGI-TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v-~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +|+++|++.++.|++++ |+| |+|+||+++|++........       .+......+.. +.+|||+|+++++|+++++
T Consensus       160 aa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~-------~~~~~~~~~~~-~~~pedvA~~~~~l~s~~~  231 (252)
T 3h7a_A          160 FGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQM-------FGKDALANPDL-LMPPAAVAGAYWQLYQQPK  231 (252)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------CCHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhh-------hhhhhhcCCcc-CCCHHHHHHHHHHHHhCch
Confidence            99999999999999987 999 99999999999987532111       01111122233 6789999999999999888


Q ss_pred             ccccCC
Q 042560          280 RYLTQP  285 (287)
Q Consensus       280 ~~itG~  285 (287)
                      ++++|+
T Consensus       232 ~~~~~~  237 (252)
T 3h7a_A          232 SAWTFE  237 (252)
T ss_dssp             GGBCSE
T ss_pred             hcceee
Confidence            888886

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=100.00  E-value=3e-44  Score=310.72  Aligned_cols=242  Identities=19%  Similarity=0.298  Sum_probs=201.8

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.|++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...+ +..+..+.+|++|++++++++   
T Consensus         4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~---   80 (267)
T 3t4x_A            4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVI---   80 (267)
T ss_dssp             CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHH---
T ss_pred             cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHH---
Confidence            3467899999999999999999999999999999999999999998888887654 456889999999999887765   


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                       ++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        81 -~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  158 (267)
T 3t4x_A           81 -EKYPKVDILINNLGIFEPVEYFDI-PDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYS  158 (267)
T ss_dssp             -HHCCCCSEEEECCCCCCCCCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHH
T ss_pred             -HhcCCCCEEEECCCCCCCCccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHH
Confidence             457899999999999877666554 4588999999999999999999999997765 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcC--CCccch---HHHHhhhhc---CCCCCCHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKN--GKLEVD---QEIRDVQIS---LLPVQPTEECAK  269 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~--~~~~~~---~~~~~~~~~---~~~~~~p~evA~  269 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++.........  .....+   ++..+...+   ..++++|||||+
T Consensus       159 asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~  238 (267)
T 3t4x_A          159 ATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAH  238 (267)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHH
Confidence            99999999999999999988 999999999999997654321111  111111   112222223   245567999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      +++||++++++|+||+.+
T Consensus       239 ~v~fL~s~~~~~itG~~i  256 (267)
T 3t4x_A          239 LVTFLSSPLSSAINGSAL  256 (267)
T ss_dssp             HHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHcCccccCccCCeE
Confidence            999999999999999864

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=100.00  E-value=1.6e-45  Score=320.03  Aligned_cols=241  Identities=20%  Similarity=0.243  Sum_probs=206.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.++++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...+ .++..+.+|++|.++++++++++.
T Consensus        27 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           27 TIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             HHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999998888888887655 468999999999999999999998


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +. +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.+....|++
T Consensus       106 ~~-g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~a  183 (275)
T 4imr_A          106 AI-APVDILVINASAQINATLSAL-TPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAA  183 (275)
T ss_dssp             HH-SCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             Hh-CCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHH
Confidence            88 999999999998877665554 4588999999999999999999999997654 89999999999998888999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++........   ....++..+...+..++++|||+|++++||++++
T Consensus       184 sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~---~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~  260 (275)
T 4imr_A          184 TKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQD---PEGWDEYVRTLNWMGRAGRPEEMVGAALFLASEA  260 (275)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHC---HHHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccC---hHHHHHHHhhcCccCCCcCHHHHHHHHHHHcCcc
Confidence            9999999999999999987 99999999999999865421100   0011122222225566778999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       261 a~~itG~~i  269 (275)
T 4imr_A          261 CSFMTGETI  269 (275)
T ss_dssp             GTTCCSCEE
T ss_pred             cCCCCCCEE
Confidence            999999864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=100.00  E-value=4.4e-44  Score=305.93  Aligned_cols=236  Identities=22%  Similarity=0.264  Sum_probs=206.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||+++|++|+++|++|++++|+.+..++..++++..+ .++.++.+|++|+++++++++++.++
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999998888887665 36899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|.++ .|+||++||..+..+.++...|+++|
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  158 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRM-SEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAK  158 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHH
Confidence            9999999999999877655553 458899999999999999999999988654 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|+++|++.++.|++++ |+||+|+||+++|++......       ...+......+..++.+|||+|+++++|++++++
T Consensus       159 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~  231 (247)
T 3lyl_A          159 AGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTD-------EQKSFIATKIPSGQIGEPKDIAAAVAFLASEEAK  231 (247)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCH-------HHHHHHHTTSTTCCCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccH-------HHHHHHhhcCCCCCCcCHHHHHHHHHHHhCCCcC
Confidence            99999999999999887 999999999999998765310       1112222333444566899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       232 ~~tG~~i  238 (247)
T 3lyl_A          232 YITGQTL  238 (247)
T ss_dssp             TCCSCEE
T ss_pred             CccCCEE
Confidence            9999864

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=100.00  E-value=2.6e-44  Score=312.10  Aligned_cols=239  Identities=23%  Similarity=0.303  Sum_probs=199.7

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.++++||+++||||++|||+++|++|+++|++|++++|+ +..++..+++...+ .++.++.+|++|.++++++.+ .
T Consensus        24 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~-~  100 (273)
T 3uf0_A           24 TGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGG-GSAEAVVADLADLEGAANVAE-E  100 (273)
T ss_dssp             -CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTT-CEEEEEECCTTCHHHHHHHHH-H
T ss_pred             ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHH-H
Confidence            34578899999999999999999999999999999999966 45566666665544 479999999999999999954 4


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus       101 ~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~  179 (273)
T 3uf0_A          101 LAATRRVDVLVNNAGIIARAPAEEV-SLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYA  179 (273)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHH
T ss_pred             HHhcCCCcEEEECCCCCCCCCchhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHH
Confidence            5566999999999999877666554 5588999999999999999999999987654 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++.......+     ...+......+..++++|||+|++++||+++
T Consensus       180 asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-----~~~~~~~~~~p~~r~~~pedva~~v~~L~s~  254 (273)
T 3uf0_A          180 ASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADD-----ERAAEITARIPAGRWATPEDMVGPAVFLASD  254 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSH-----HHHHHHHHHSTTSSCBCGGGGHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCH-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc
Confidence            99999999999999999987 99999999999999875422110     0111122233445566899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       255 ~a~~itG~~i  264 (273)
T 3uf0_A          255 AASYVHGQVL  264 (273)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhcCCcCCEE
Confidence            9999999864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=9.2e-44  Score=306.34  Aligned_cols=236  Identities=27%  Similarity=0.361  Sum_probs=191.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++.+|++|.++++++++++.+
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----GDAALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999988877765    24689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-----CCEEEEEcCCCCCCCCCCChh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-----KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-----~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +++++|++|||||...........+.++|++.+++|+.+++.+++.++|.|+++     .|+||++||..+..+.++...
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  159 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAW  159 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHH
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccH
Confidence            999999999999987633333333557899999999999999999999999754     468999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~  272 (287)
                      |+++|+|+++|++.++.|++++ |+||+|+||+++|++........      .++..+..   .+..++.+|||+|++++
T Consensus       160 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~dva~~~~  233 (261)
T 3n74_A          160 YNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGED------SEEIRKKFRDSIPMGRLLKPDDLAEAAA  233 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------CTTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccC------cHHHHHHHhhcCCcCCCcCHHHHHHHHH
Confidence            9999999999999999999887 99999999999999987543221      12222222   33344568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++|+||+.|
T Consensus       234 ~l~s~~~~~itG~~i  248 (261)
T 3n74_A          234 FLCSPQASMITGVAL  248 (261)
T ss_dssp             HHTSGGGTTCCSCEE
T ss_pred             HHcCCcccCcCCcEE
Confidence            999999999999864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=100.00  E-value=1e-43  Score=306.91  Aligned_cols=240  Identities=26%  Similarity=0.265  Sum_probs=202.1

Q ss_pred             CCCCCCCCEEEEecCC-ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGAS-SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~-~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||+ +|||+++|++|+++|++|++++|+.+++++..++++..+..++.++.+|++|.++++++++++
T Consensus        16 ~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           16 GHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             CCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence            3456899999999997 599999999999999999999999999999988887766668999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|+++  +|+||++||..+..+.++...|
T Consensus        96 ~~~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y  174 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGGQTPVVDM-TDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHY  174 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHH
T ss_pred             HHHhCCCcEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchH
Confidence            9999999999999998877665554 458899999999999999999999999865  3799999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+++|++.++.|++++ |+||+|+||+++|++.+.....+      ..+......+..++.+|||+|+++++|++
T Consensus       175 ~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~------~~~~~~~~~~~~r~~~~~dva~~i~~l~s  248 (266)
T 3o38_A          175 AAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSE------LLDRLASDEAFGRAAEPWEVAATIAFLAS  248 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------CCTTSSCCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHH------HHHHHHhcCCcCCCCCHHHHHHHHHHHcC
Confidence            999999999999999999887 99999999999999876532111      01111222334456689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++++||+.+
T Consensus       249 ~~~~~~tG~~i  259 (266)
T 3o38_A          249 DYSSYMTGEVV  259 (266)
T ss_dssp             GGGTTCCSCEE
T ss_pred             ccccCccCCEE
Confidence            99999999864

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=100.00  E-value=4.1e-44  Score=306.01  Aligned_cols=233  Identities=24%  Similarity=0.330  Sum_probs=202.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC--CCHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV--SKVEDCKHFVD  117 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~v~~~~~  117 (287)
                      .+.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+..++.++.+|+  +|.++++++++
T Consensus         7 ~~~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~   86 (247)
T 3i1j_A            7 AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAA   86 (247)
T ss_dssp             CCTTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHH
Confidence            4556789999999999999999999999999999999999999999999888876655677777777  99999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++.++++++|++|||||...........+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  166 (247)
T 3i1j_A           87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGA  166 (247)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHH
T ss_pred             HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcch
Confidence            99999999999999999864433333345588999999999999999999999997755 89999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          197 YNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      |+++|+|+++|++.++.|+++ . |+||+|+||+++|+|........               ...+..+|||+|+.++||
T Consensus       167 Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~~~~---------------~~~~~~~p~dva~~~~~l  231 (247)
T 3i1j_A          167 YGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPDE---------------NPLNNPAPEDIMPVYLYL  231 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHSTTS---------------CGGGSCCGGGGTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhccccc---------------CccCCCCHHHHHHHHHHH
Confidence            999999999999999999976 5 99999999999999865432111               011345799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       232 ~s~~~~~itG~~i  244 (247)
T 3i1j_A          232 MGPDSTGINGQAL  244 (247)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCchhccccCeee
Confidence            9999999999964

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-43  Score=303.70  Aligned_cols=234  Identities=24%  Similarity=0.274  Sum_probs=196.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|+++||||++|||+++|++|+++|  ++|++++|+.+.+++..+++    +.++.++.+|++|+++++++++++.++++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY----GDRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH----GGGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999985  68999999999888777665    23689999999999999999999999999


Q ss_pred             CccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++++|+||++||..+..+.++...|++||+|
T Consensus        78 ~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  156 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNE-IDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYFSSWGAYGSSKAA  156 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTS-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSSCCSHHHHHHHHH
T ss_pred             CccEEEECCcccCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCCCCcchHHHHHHH
Confidence            99999999998654 44444 45588999999999999999999999998877999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHH---HHhhhhcCCCCCCHHHHHHHHHHhhccC-C
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE---IRDVQISLLPVQPTEECAKAIVNSACRG-D  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~evA~~i~~l~~~~-~  279 (287)
                      +++|++.++.|+ +.|+||+|+||+++|++........... ...++   ......+..++++|||+|++++||++++ +
T Consensus       157 ~~~~~~~la~e~-~~i~vn~v~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~  234 (254)
T 3kzv_A          157 LNHFAMTLANEE-RQVKAIAVAPGIVDTDMQVNIRENVGPS-SMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIP  234 (254)
T ss_dssp             HHHHHHHHHHHC-TTSEEEEEECSSCCCCCSCCCCCCCCTT-TSCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhhc-cCcEEEEEeCCcccchhHHHhhcccCcc-ccCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhccc
Confidence            999999999998 4599999999999999987643221111 11122   2333445566778999999999999999 5


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       235 ~~itG~~i  242 (254)
T 3kzv_A          235 DGVNGQYL  242 (254)
T ss_dssp             GGGTTCEE
T ss_pred             CCCCccEE
Confidence            99999864

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=100.00  E-value=1.5e-43  Score=307.24  Aligned_cols=241  Identities=26%  Similarity=0.324  Sum_probs=199.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++..+.+|++|+++++++++++.
T Consensus        15 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   93 (273)
T 1ae1_A           15 GRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-LNVEGSVCDLLSRTERDKLMQTVA   93 (273)
T ss_dssp             -CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999998888877776654 368899999999999999999999


Q ss_pred             Hhc-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +++ +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        94 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~  172 (273)
T 1ae1_A           94 HVFDGKLNILVNNAGVVIHKEAKDF-TEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYS  172 (273)
T ss_dssp             HHTTSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHcCCCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhH
Confidence            999 999999999998766655553 4478999999999999999999999997654 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l  274 (287)
                      ++|++++++++.++.|++++ |+||+|+||+++|++.........    ..++..+.   ..+..++++|||+|+++++|
T Consensus       173 asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l  248 (273)
T 1ae1_A          173 ASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNP----HQKEEIDNFIVKTPMGRAGKPQEVSALIAFL  248 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhccc----CcHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999887 999999999999998754321100    01122222   23344566899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       249 ~s~~~~~~tG~~i  261 (273)
T 1ae1_A          249 CFPAASYITGQII  261 (273)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCccccCcCCCEE
Confidence            9999999999853

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=100.00  E-value=6.9e-44  Score=312.89  Aligned_cols=235  Identities=21%  Similarity=0.231  Sum_probs=200.5

Q ss_pred             CCCCCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +.+++++|+++||||+|  |||+++|++|+++|++|++++|+.+..+...+..+..+  .+.++++|++|++++++++++
T Consensus        24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHH
T ss_pred             chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHH
Confidence            44678999999999997  99999999999999999999999766555544444433  368899999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      +.++++++|++|||||+...    .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.+++
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~-~g~IV~isS~~~~~~~~~~  179 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVD-TSLGNFLTSMHISCYSFTYIASKAEPLMTN-GGSILTLSYYGAEKVVPHY  179 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGCTT-CEEEEEEECGGGTSCCTTT
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhh-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCEEEEEEehhhccCCCCc
Confidence            99999999999999998764    34444 355789999999999999999999999876 7899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHH---hhhhcCCCCCCHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIR---DVQISLLPVQPTEECAKA  270 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~evA~~  270 (287)
                      ..|++||+|+++|++.++.|++++ |+||+|+||+++|++.....        ..++..   ....+..++++|||||++
T Consensus       180 ~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~--------~~~~~~~~~~~~~p~~r~~~pedvA~~  251 (296)
T 3k31_A          180 NVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGIS--------DFHYILTWNKYNSPLRRNTTLDDVGGA  251 (296)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCH--------HHHHHHHHHHHHSTTSSCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhccc--------chHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence            999999999999999999999987 99999999999999876421        112222   233344556789999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      ++||++++++|+||+.|
T Consensus       252 v~fL~s~~a~~itG~~i  268 (296)
T 3k31_A          252 ALYLLSDLGRGTTGETV  268 (296)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHcCCccCCccCCEE
Confidence            99999999999999864

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.8e-44  Score=310.54  Aligned_cols=227  Identities=23%  Similarity=0.252  Sum_probs=194.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-------HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.++       +++..+++...+ .++.++++|++|+++++++
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~   80 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG-GQGLALKCDIREEDQVRAA   80 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT-SEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHH
Confidence            67899999999999999999999999999999999998653       566666665554 4799999999999999999


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--CC
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--PP  192 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--~~  192 (287)
                      ++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+  .+
T Consensus        81 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~  159 (274)
T 3e03_A           81 VAATVDTFGGIDILVNNASAIWLRGTLDT-PMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWG  159 (274)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGS-CHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCcccCCCcccC-CHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCC
Confidence            99999999999999999999877665554 4588999999999999999999999998765 89999999999887  67


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCC-cccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG-LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~  270 (287)
                      +...|++||+|+++|++.++.|++++ |+||+|+|| +++|++..... ..               +..++.+|||+|++
T Consensus       160 ~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~~-~~---------------~~~~~~~pedvA~~  223 (274)
T 3e03_A          160 AHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLP-GV---------------DAAACRRPEIMADA  223 (274)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC--------CC---------------CGGGSBCTHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhcc-cc---------------cccccCCHHHHHHH
Confidence            88999999999999999999999987 999999999 69999874211 00               11125689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++|++++++|+||+.+
T Consensus       224 v~~l~s~~~~~itG~~i  240 (274)
T 3e03_A          224 AHAVLTREAAGFHGQFL  240 (274)
T ss_dssp             HHHHHTSCCTTCCSCEE
T ss_pred             HHHHhCccccccCCeEE
Confidence            99999999999999864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=100.00  E-value=5.5e-45  Score=314.49  Aligned_cols=238  Identities=18%  Similarity=0.184  Sum_probs=195.4

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR---ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      .+.+++++|+++||||++|||+++|++|+++|++|++++|+   .+.+++..++++..+ .++.++.+|++|++++++++
T Consensus         4 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~   82 (262)
T 3ksu_A            4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG-AKVALYQSDLSNEEEVAKLF   82 (262)
T ss_dssp             CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT-CEEEEEECCCCSHHHHHHHH
T ss_pred             ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHH
Confidence            34578899999999999999999999999999999998775   445666667776554 47999999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+ ++|+||++||..+..+.++...
T Consensus        83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~-~~g~iv~isS~~~~~~~~~~~~  160 (262)
T 3ksu_A           83 DFAEKEFGKVDIAINTVGKVLKKPIVET-SEAEFDAMDTINNKVAYFFIKQAAKHMN-PNGHIITIATSLLAAYTGFYST  160 (262)
T ss_dssp             HHHHHHHCSEEEEEECCCCCCSSCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHTTEE-EEEEEEEECCCHHHHHHCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHhhc-CCCEEEEEechhhccCCCCCch
Confidence            9999999999999999999877666554 4588999999999999999999999994 4689999999999888889999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++.......+      ..+......+..++.+|||+|++++||+
T Consensus       161 Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~------~~~~~~~~~~~~r~~~pedvA~~v~~L~  234 (262)
T 3ksu_A          161 YAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKE------STAFHKSQAMGNQLTKIEDIAPIIKFLT  234 (262)
T ss_dssp             -----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------CCCCSCCGGGTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchH------HHHHHHhcCcccCCCCHHHHHHHHHHHc
Confidence            9999999999999999999988 99999999999999875422111      1122223334556678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      ++ ++|+||+.+
T Consensus       235 s~-~~~itG~~i  245 (262)
T 3ksu_A          235 TD-GWWINGQTI  245 (262)
T ss_dssp             TT-TTTCCSCEE
T ss_pred             CC-CCCccCCEE
Confidence            99 899999864

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=100.00  E-value=2.8e-44  Score=314.65  Aligned_cols=236  Identities=26%  Similarity=0.288  Sum_probs=199.3

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ...+++||+++||||++|||+++|++|+++|++|++++|+.+... +..+.++.. +.++.++.+|++|+++++++++++
T Consensus        41 ~~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           41 GSEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999877544 444444443 357999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      .++++++|++|||||...........+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|++
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~a  198 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ-GDVIINTASIVAYEGNETLIDYSA  198 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT-TCEEEEECCTHHHHCCTTCHHHHH
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh-CCEEEEEechHhcCCCCCChhHHH
Confidence            9999999999999998754333333455889999999999999999999999864 689999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++.....         .++..+...   +..++++|||+|+++++|+
T Consensus       199 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---------~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~  269 (291)
T 3ijr_A          199 TKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF---------DEKKVSQFGSNVPMQRPGQPYELAPAYVYLA  269 (291)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS---------CHHHHHHTTTTSTTSSCBCGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC---------CHHHHHHHHccCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999887 99999999999999864321         122223233   3344557999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       270 s~~~~~itG~~i  281 (291)
T 3ijr_A          270 SSDSSYVTGQMI  281 (291)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CCccCCCcCCEE
Confidence            999999999864

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.8e-43  Score=313.08  Aligned_cols=244  Identities=25%  Similarity=0.353  Sum_probs=202.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------------hhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR------------ERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      ..+++||+++||||++|||+++|++|+++|++|++++|+            .+.+++..+++...+ .++.++.+|++|+
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~  119 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-RRIIARQADVRDL  119 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence            346789999999999999999999999999999999886            666777777766654 4699999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAG  187 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~  187 (287)
                      ++++++++++.++++++|++|||||+....++.+. +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..+
T Consensus       120 ~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~  198 (317)
T 3oec_A          120 ASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSL-TDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVG  198 (317)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHh
Confidence            99999999999999999999999999877666554 458899999999999999999999999765  489999999999


Q ss_pred             CCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccchHHHHhh--hhcC--
Q 042560          188 WLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVDQEIRDV--QISL--  258 (287)
Q Consensus       188 ~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~~~~~~~--~~~~--  258 (287)
                      ..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++......    .+.......++..+.  ....  
T Consensus       199 ~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  278 (317)
T 3oec_A          199 LRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLP  278 (317)
T ss_dssp             SSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSS
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhhccCC
Confidence            9999999999999999999999999999987 999999999999998642100    000000111111111  1111  


Q ss_pred             CCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          259 LPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       259 ~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .++.+|||||++++||++++++|+||+.+
T Consensus       279 ~~~~~pedvA~av~fL~s~~a~~itG~~i  307 (317)
T 3oec_A          279 IPWVEPEDVSNAVAWLASDEARYIHGAAI  307 (317)
T ss_dssp             SSSBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             CCCCCHHHHHHHHHHHcCCcccCCCCCEE
Confidence            44568999999999999999999999864

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=100.00  E-value=5.4e-44  Score=307.31  Aligned_cols=233  Identities=21%  Similarity=0.231  Sum_probs=184.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|++++|+++||||++|||+++|++|+++|++|++++|+.+..++..+++    +.++.++.+|++|+++++++++++.+
T Consensus         2 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (257)
T 3tpc_A            2 VMQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL----GAAVRFRNADVTNEADATAALAFAKQ   77 (257)
T ss_dssp             --CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999998877766655    23688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCC---CCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCCCCCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFED---YTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPP  191 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~~~~~  191 (287)
                      +++++|++|||||......+..   ..+.++|++.+++|+.+++.++++++|.|+++       +|+||++||..+..+.
T Consensus        78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~  157 (257)
T 3tpc_A           78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ  157 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred             HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC
Confidence            9999999999999886554331   23447889999999999999999999999863       4899999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-CCCCCHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-LPVQPTEECAK  269 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~evA~  269 (287)
                      ++...|++||+|+++|++.++.|++++ |+||+|+||+++|++.......       ..+......+. .++++|||+|+
T Consensus       158 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-------~~~~~~~~~p~~~r~~~~~dva~  230 (257)
T 3tpc_A          158 IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQD-------VQDALAASVPFPPRLGRAEEYAA  230 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC---------------------CCSSSSCSCBCHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHH-------HHHHHHhcCCCCCCCCCHHHHHH
Confidence            999999999999999999999999987 9999999999999987643211       01111122222 45668999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      ++++|+++  +|+||+.+
T Consensus       231 ~v~~l~s~--~~itG~~i  246 (257)
T 3tpc_A          231 LVKHICEN--TMLNGEVI  246 (257)
T ss_dssp             HHHHHHHC--TTCCSCEE
T ss_pred             HHHHHccc--CCcCCcEE
Confidence            99999986  79999864

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-43  Score=307.03  Aligned_cols=244  Identities=26%  Similarity=0.361  Sum_probs=202.1

Q ss_pred             hhhhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           35 FVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        35 ~~~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      ....+.+..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....+.++.++.+|++|++++++
T Consensus         9 ~~~~~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~   88 (267)
T 1vl8_A            9 HHHHMKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKK   88 (267)
T ss_dssp             --------CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence            34455667888999999999999999999999999999999999999988887777622223468889999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCC-CCCCCC
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAA-GWLPPP  192 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~-~~~~~~  192 (287)
                      +++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||.. +..+.+
T Consensus        89 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~  167 (267)
T 1vl8_A           89 LLEAVKEKFGKLDTVVNAAGINRRHPAEEF-PLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMP  167 (267)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSS
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCC
Confidence            999999999999999999998766555543 4578999999999999999999999997654 8999999999 888889


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECA  268 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA  268 (287)
                      +...|+++|+++++|++.++.|++++ |+||+|+||+++|++......        .++..+..   .+..++.+|||+|
T Consensus       168 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~~p~~~~~~p~dvA  239 (267)
T 1vl8_A          168 NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS--------DPEKLDYMLKRIPLGRTGVPEDLK  239 (267)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT--------CHHHHHHHHHTCTTSSCBCGGGGH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc--------ChHHHHHHHhhCCCCCCcCHHHHH
Confidence            99999999999999999999999887 999999999999998653210        11222222   2334456899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +.+++|++++++|+||+.+
T Consensus       240 ~~v~~l~s~~~~~itG~~i  258 (267)
T 1vl8_A          240 GVAVFLASEEAKYVTGQII  258 (267)
T ss_dssp             HHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHcCccccCCcCCeE
Confidence            9999999999999999853

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-43  Score=309.15  Aligned_cols=231  Identities=22%  Similarity=0.262  Sum_probs=189.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ...+++||+++||||++|||+++|++|+++|++|++++|+.+.+++..+++...++..+.++++|++|+++++++++++.
T Consensus        27 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  106 (281)
T 4dry_A           27 GKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVR  106 (281)
T ss_dssp             -------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            44567999999999999999999999999999999999999999988888866554456899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|+++   +|+||++||..+..+.++...
T Consensus       107 ~~~g~iD~lvnnAG~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~  185 (281)
T 4dry_A          107 AEFARLDLLVNNAGSNVPPVPLEE-VTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAP  185 (281)
T ss_dssp             HHHSCCSEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHH
T ss_pred             HHcCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChh
Confidence            999999999999998755 34444 4558899999999999999999999999765   489999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++.+.......       +. ....+..++.+|||+|++++||+
T Consensus       186 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~-------~~-~~~~~~~~~~~pedvA~~v~fL~  257 (281)
T 4dry_A          186 YTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVL-------QA-NGEVAAEPTIPIEHIAEAVVYMA  257 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CEEE-------CT-TSCEEECCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcchhh-------hh-hhcccccCCCCHHHHHHHHHHHh
Confidence            9999999999999999999987 999999999999999865421110       00 01123345678999999999999


Q ss_pred             ccCCc
Q 042560          276 CRGDR  280 (287)
Q Consensus       276 ~~~~~  280 (287)
                      +++.+
T Consensus       258 s~~~~  262 (281)
T 4dry_A          258 SLPLS  262 (281)
T ss_dssp             HSCTT
T ss_pred             CCCcc
Confidence            97654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.7e-43  Score=304.10  Aligned_cols=231  Identities=29%  Similarity=0.406  Sum_probs=191.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++|+++||||++|||+++|++|+++|++|++++|+.+++++..++++..+ .++..+.+|++|+++++++++++.++++
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG-GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999999888887765 4789999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ +|+||++||..+..+.++...|++||+|
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa  159 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAV-KVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFA  159 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHH
Confidence            99999999999876666554 458899999999999999999999999764 4899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      +++|++.++.|+ +.||||+|+||+++|++.........      .+....  ......+|||||+++++|+++++++++
T Consensus       160 l~~l~~~la~e~-~gIrvn~v~PG~v~T~~~~~~~~~~~------~~~~~~--~~~~~~~pedvA~~v~~l~s~~~~~~~  230 (264)
T 3tfo_A          160 VRAISDGLRQES-TNIRVTCVNPGVVESELAGTITHEET------MAAMDT--YRAIALQPADIARAVRQVIEAPQSVDT  230 (264)
T ss_dssp             HHHHHHHHHHHC-SSEEEEEEEECCC-------------------------------CCCHHHHHHHHHHHHHSCTTEEE
T ss_pred             HHHHHHHHHHhC-CCCEEEEEecCCCcCcccccccchhH------HHHHHh--hhccCCCHHHHHHHHHHHhcCCccCcc
Confidence            999999999998 47999999999999999765321110      000000  111246899999999999999999998


Q ss_pred             CCC
Q 042560          284 QPS  286 (287)
Q Consensus       284 G~~  286 (287)
                      |+.
T Consensus       231 ~~i  233 (264)
T 3tfo_A          231 TEI  233 (264)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            863

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.1e-43  Score=310.00  Aligned_cols=230  Identities=21%  Similarity=0.221  Sum_probs=198.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-------HHHHHHHHHHhcCCCeeEEEeecCCCHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-------QLREVADQAELMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      ..|++++|+++||||++|||+++|++|+++|++|++++|+.+       .+++..+++...+ .++.++++|++|+++++
T Consensus         3 ~~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~   81 (285)
T 3sc4_A            3 GSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG-GQALPIVGDIRDGDAVA   81 (285)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT-SEEEEEECCTTSHHHHH
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHH
Confidence            457789999999999999999999999999999999999876       4666667666554 47999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC-
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP-  191 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~-  191 (287)
                      ++++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+. 
T Consensus        82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~  160 (285)
T 3sc4_A           82 AAVAKTVEQFGGIDICVNNASAINLGSIEEV-PLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKW  160 (285)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCCCTTTS-CHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGG
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCC
Confidence            9999999999999999999999877666554 4588999999999999999999999998754 899999999998886 


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCC-cccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG-LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG-~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      ++...|++||+|+++|++.++.|++++ |+||+|+|| +++|++.+....              ...+..++++|||+|+
T Consensus       161 ~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~~--------------~~~~~~r~~~pedvA~  226 (285)
T 3sc4_A          161 LRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLLG--------------GDEAMARSRKPEVYAD  226 (285)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHHT--------------SCCCCTTCBCTHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhcc--------------ccccccCCCCHHHHHH
Confidence            788999999999999999999999987 999999999 689987653221              1123345678999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      ++++|+++++ ++||+.+
T Consensus       227 ~~~~l~s~~~-~~tG~~i  243 (285)
T 3sc4_A          227 AAYVVLNKPS-SYTGNTL  243 (285)
T ss_dssp             HHHHHHTSCT-TCCSCEE
T ss_pred             HHHHHhCCcc-cccceEE
Confidence            9999999998 9999863

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=100.00  E-value=2e-43  Score=300.03  Aligned_cols=219  Identities=20%  Similarity=0.230  Sum_probs=186.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.    .++.++.+|++|+++++++++++.++++
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG----NAVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            367999999999999999999999999999999999999888777762    2588999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++|+||++||..+..+.++...|++||+|+
T Consensus        77 ~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~  155 (235)
T 3l6e_A           77 LPELVLHCAGTGEFGPVGVY-TAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGKANESLYCASKWGM  155 (235)
T ss_dssp             SCSEEEEECCCC------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChHhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCCCCCcHHHHHHHHH
Confidence            99999999999776665554 45889999999999999999999999988778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc-cCCccc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC-RGDRYL  282 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~-~~~~~i  282 (287)
                      ++|++.++.|++++ |+||+|+||+++|++......                .+..++.+|||+|+.++++++ +.+.|+
T Consensus       156 ~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~----------------~~~~~~~~pedvA~~v~~l~~~~~~~~i  219 (235)
T 3l6e_A          156 RGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH----------------VDPSGFMTPEDAAAYMLDALEARSSCHV  219 (235)
T ss_dssp             HHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------CBCHHHHHHHHHHHTCCCSSEEE
T ss_pred             HHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC----------------CCCcCCCCHHHHHHHHHHHHhCCCCcce
Confidence            99999999999987 999999999999998764211                112256789999999999998 567788


Q ss_pred             cC
Q 042560          283 TQ  284 (287)
Q Consensus       283 tG  284 (287)
                      +|
T Consensus       220 ~~  221 (235)
T 3l6e_A          220 TD  221 (235)
T ss_dssp             EE
T ss_pred             ee
Confidence            87

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-43  Score=306.76  Aligned_cols=244  Identities=23%  Similarity=0.258  Sum_probs=201.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.... +.++.++.+|++|+++++++++++
T Consensus         7 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   86 (267)
T 1iy8_A            7 PTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT   86 (267)
T ss_dssp             ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999998888877775541 346889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  165 (267)
T 1iy8_A           87 TERFGRIDGFFNNAGIEGKQNPTES-FTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGY  165 (267)
T ss_dssp             HHHHSCCSEEEECCCCCCCCBCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCCCccH
Confidence            9999999999999998765 44444 34578999999999999999999999997654 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHH---HHhhhhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQE---IRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      +++|++++++++.++.|++++ |+||+|+||+++|++..........  ...++   ......+..++++|||+|+.+++
T Consensus       166 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~  243 (267)
T 1iy8_A          166 AAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDP--ENPRKAAEEFIQVNPSKRYGEAPEIAAVVAF  243 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCT--TCHHHHHHHHHTTCTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccCh--hhhhhHHHHHhccCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999887 9999999999999986532000000  00111   11122233445689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       244 l~s~~~~~~tG~~i  257 (267)
T 1iy8_A          244 LLSDDASYVNATVV  257 (267)
T ss_dssp             HTSGGGTTCCSCEE
T ss_pred             HcCccccCCCCCEE
Confidence            99999999999853

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3e-43  Score=305.84  Aligned_cols=239  Identities=26%  Similarity=0.316  Sum_probs=203.5

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ..+.|++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+  ++.++.+|++|++++++++++
T Consensus        21 ~~~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~   98 (276)
T 2b4q_A           21 MHPYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQA   98 (276)
T ss_dssp             CCTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHH
T ss_pred             cccccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHH
Confidence            345577899999999999999999999999999999999999988888777775433  688899999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-----CEEEEEcCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-----GKIIVVASAAGWLPPPR  193 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-----g~iv~isS~~~~~~~~~  193 (287)
                      +.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++     |+||++||..+..+.++
T Consensus        99 ~~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~~~  177 (276)
T 2b4q_A           99 LGELSARLDILVNNAGTSWGAALESY-PVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGE  177 (276)
T ss_dssp             HHHHCSCCSEEEECCCCCCCCCTTSC-CSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCCCC
T ss_pred             HHHhcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCCCC
Confidence            99999999999999998876655553 4578999999999999999999999996543     89999999999988888


Q ss_pred             Ch-hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh--hhcCCCCCCHHHHHH
Q 042560          194 MS-FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAK  269 (287)
Q Consensus       194 ~~-~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~evA~  269 (287)
                      .. .|+++|++++++++.++.|+++. |+||+|+||+++|++.......       ..+....  ..+..++++|||+|+
T Consensus       178 ~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-------~~~~~~~~~~~p~~r~~~p~dvA~  250 (276)
T 2b4q_A          178 QAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIAND-------PQALEADSASIPMGRWGRPEEMAA  250 (276)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHC-------HHHHHHHHHTSTTSSCCCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchh-------HHHHHHhhcCCCCCCcCCHHHHHH
Confidence            88 99999999999999999999887 9999999999999986532110       1111111  223445678999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      ++++|++++++|+||+.+
T Consensus       251 ~v~~l~s~~~~~~tG~~i  268 (276)
T 2b4q_A          251 LAISLAGTAGAYMTGNVI  268 (276)
T ss_dssp             HHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhCccccCCCCCEE
Confidence            999999999999999853

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=100.00  E-value=4.1e-43  Score=307.23  Aligned_cols=233  Identities=20%  Similarity=0.188  Sum_probs=198.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHH-----------
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVE-----------  110 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----------  110 (287)
                      +++++|+++||||++|||++++++|+++|++|++++ |+.+.+++..+++....+.++.++++|++|.+           
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA   84 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccc
Confidence            467899999999999999999999999999999999 99998888888776222346899999999999           


Q ss_pred             ------HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCC-------------CCCcccchhehhhhHHHHHHHHHHH
Q 042560          111 ------DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-------------ITKPAPAMDINFWGSAYGTYFAIPY  171 (287)
Q Consensus       111 ------~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~-------------~~~~~~~~~~n~~~~~~l~~~~~~~  171 (287)
                            +++++++++.++++++|++|||||.....++.+..+             .++|++++++|+.+++.++++++|.
T Consensus        85 ~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  164 (291)
T 1e7w_A           85 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR  164 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                  999999999999999999999999876655544320             4778899999999999999999999


Q ss_pred             HhcCC-------CEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC
Q 042560          172 LKQTK-------GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG  243 (287)
Q Consensus       172 l~~~~-------g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~  243 (287)
                      |++++       |+||++||..+..+.++...|++||+++++|++.++.|++++ |+||+|+||+++|++ + . .    
T Consensus       165 m~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~-~----  237 (291)
T 1e7w_A          165 VAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M-P----  237 (291)
T ss_dssp             HHTSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S-C----
T ss_pred             HHhcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C-C----
Confidence            97654       899999999999999999999999999999999999999987 999999999999998 3 2 1    


Q ss_pred             CccchHHHHhhhh---cCC-CCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          244 KLEVDQEIRDVQI---SLL-PVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       244 ~~~~~~~~~~~~~---~~~-~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                           ++..+...   +.. ++++|||+|+.+++|++++++|+||+.+
T Consensus       238 -----~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i  280 (291)
T 1e7w_A          238 -----PAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV  280 (291)
T ss_dssp             -----HHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             -----HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEE
Confidence                 12222222   333 4568999999999999999999999853

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=100.00  E-value=2.8e-43  Score=300.98  Aligned_cols=235  Identities=29%  Similarity=0.387  Sum_probs=200.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||++|||++++++|+++|++|++++| +.+++++..++++..+ .++.++++|++|+++++++++++.++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG-SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999 8888888777776554 36889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++|
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  158 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRM-KEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAK  158 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHH
Confidence            9999999999998766555543 4578999999999999999999999997654 8999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.....  +     ...+......+..++.+|||+|+.+++|++++++
T Consensus       159 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~-----~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~  231 (246)
T 2uvd_A          159 AGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--E-----NIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSK  231 (246)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--T-----THHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--H-----HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhc
Confidence            99999999999999887 99999999999999865421  0     0111112222344566899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+||+.+
T Consensus       232 ~~tG~~~  238 (246)
T 2uvd_A          232 YITGQTL  238 (246)
T ss_dssp             TCCSCEE
T ss_pred             CCCCCEE
Confidence            9999853

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=100.00  E-value=4.4e-43  Score=307.35  Aligned_cols=236  Identities=19%  Similarity=0.160  Sum_probs=193.8

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .++++|+++||||+  +|||+++|++|+++|++|++++|+....+...+.....+  ++.++.+|++|+++++++++++.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHH
Confidence            46889999999999  559999999999999999999999654444333333332  48899999999999999999999


Q ss_pred             HhcCCccEEEEccccCC----CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVP----MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||...    ..++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.+++..
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~-~g~Iv~isS~~~~~~~~~~~~  182 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYID-TSEANFTNTMLISVYSLTAVSRRAEKLMAD-GGSILTLTYYGAEKVMPNYNV  182 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CEEEEEEECGGGTSBCTTTTH
T ss_pred             HhcCCCCEEEECCccCCcccccccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEeehhhccCCCchHH
Confidence            99999999999999876    344444 355789999999999999999999999976 789999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++.......     ....+......+..++++|||+|++++||+
T Consensus       183 Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-----~~~~~~~~~~~p~~r~~~pedvA~~v~~L~  257 (293)
T 3grk_A          183 MGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDF-----RYILKWNEYNAPLRRTVTIDEVGDVGLYFL  257 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCH-----HHHHHHHHHHSTTSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccch-----HHHHHHHHhcCCCCCCCCHHHHHHHHHHHc
Confidence            9999999999999999999987 9999999999999987642110     001122233345556678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.|
T Consensus       258 s~~~~~itG~~i  269 (293)
T 3grk_A          258 SDLSRSVTGEVH  269 (293)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CccccCCcceEE
Confidence            999999999864

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=100.00  E-value=1.8e-43  Score=306.40  Aligned_cols=239  Identities=26%  Similarity=0.259  Sum_probs=199.3

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .+.|++++|+++||||++|||+++|++|+++|++|++++|+ .+..++..++++..+ .++.++.+|++|++++++++++
T Consensus        22 ~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           22 SNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG-YKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             --CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHH
Confidence            45688999999999999999999999999999999999995 555566666665554 4699999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....+..+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|
T Consensus       101 ~~~~~g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  179 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAGVVRDKLAIKM-KTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNY  179 (271)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHH
T ss_pred             HHHhcCCCCEEEECCCcCCCcccccC-CHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCchHh
Confidence            99999999999999999877665553 4588999999999999999999999997655 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|++++++.++.|+++. |+||+|+||+++|++.......       ..+......+..++.+|||+|+++++|++
T Consensus       180 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-------~~~~~~~~~~~~~~~~p~dvA~~i~~l~s  252 (271)
T 4iin_A          180 SASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDE-------LKADYVKNIPLNRLGSAKEVAEAVAFLLS  252 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------CGGGCTTCSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHH-------HHHHHHhcCCcCCCcCHHHHHHHHHHHhC
Confidence            999999999999999999877 9999999999999987653211       01112223344556689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       253 ~~~~~itG~~i  263 (271)
T 4iin_A          253 DHSSYITGETL  263 (271)
T ss_dssp             GGGTTCCSCEE
T ss_pred             CCcCCCcCCEE
Confidence            99999999864

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=100.00  E-value=4.2e-43  Score=302.24  Aligned_cols=240  Identities=26%  Similarity=0.342  Sum_probs=203.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|+++++++++++.
T Consensus         3 ~~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   81 (260)
T 2ae2_A            3 GRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVA   81 (260)
T ss_dssp             CTTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999998888877776554 468899999999999999999999


Q ss_pred             Hhc-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +++ +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        82 ~~~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  160 (260)
T 2ae2_A           82 NHFHGKLNILVNNAGIVIYKEAKDY-TVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYG  160 (260)
T ss_dssp             HHTTTCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHcCCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHH
Confidence            999 899999999998766555443 4478999999999999999999999997654 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHH---HHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQE---IRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +||++++++++.++.|++++ |+||+|+||+++|++.......+     ...+   ......+..++.+|||+|+.+++|
T Consensus       161 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l  235 (260)
T 2ae2_A          161 ATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDP-----EQKENLNKLIDRCALRRMGEPKELAAMVAFL  235 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSH-----HHHHHHHHHHHTSTTCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccCh-----hhHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887 99999999999999864321110     0111   111122334456899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       236 ~s~~~~~~tG~~~  248 (260)
T 2ae2_A          236 CFPAASYVTGQII  248 (260)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             cCccccCCCCCEE
Confidence            9999999999853

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=100.00  E-value=3.2e-43  Score=303.03  Aligned_cols=242  Identities=26%  Similarity=0.328  Sum_probs=195.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++|+++||||++|||++++++|+++|++|++++|+.+. +++..+++....+.++.++.+|++|+++++++++++.+++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            679999999999999999999999999999999999887 7777777755412468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++||+
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  160 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDF-PTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKH  160 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHH
Confidence            999999999998766555443 4578999999999999999999999997654 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCcc-chHHHH----hhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLE-VDQEIR----DVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ++++|++.++.|++++ |+||+|+||+++|++............. ..++..    ....+..++.+|||+|+.+++|++
T Consensus       161 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s  240 (260)
T 1x1t_A          161 GVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS  240 (260)
T ss_dssp             HHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999987 9999999999999987643211000000 001111    122244456789999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       241 ~~~~~~tG~~~  251 (260)
T 1x1t_A          241 DAAAQITGTTV  251 (260)
T ss_dssp             GGGTTCCSCEE
T ss_pred             hhhcCCCCCEE
Confidence            99999999853

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=100.00  E-value=9.4e-44  Score=311.75  Aligned_cols=238  Identities=24%  Similarity=0.287  Sum_probs=198.4

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.  +..++..+.++..+ .++.++.+|++|+++++++++++
T Consensus        44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~  122 (294)
T 3r3s_A           44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-RKAVLLPGDLSDESFARSLVHKA  122 (294)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-CCEEECCCCTTSHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-CcEEEEEecCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999873  34555555555544 46899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+
T Consensus       123 ~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-~g~Iv~isS~~~~~~~~~~~~Y~  200 (294)
T 3r3s_A          123 REALGGLDILALVAGKQTAIPEIKD-LTSEQFQQTFAVNVFALFWITQEAIPLLPK-GASIITTSSIQAYQPSPHLLDYA  200 (294)
T ss_dssp             HHHHTCCCEEEECCCCCCCCSSGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGCCT-TCEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHHcCCCCEEEECCCCcCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHhhc-CCEEEEECChhhccCCCCchHHH
Confidence            9999999999999998754 33334 455889999999999999999999999865 58999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|+|+++|++.++.|++++ |+||+|+||+++|++.........     ..+......+..++++|||+|++++||+++
T Consensus       201 asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~-----~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~  275 (294)
T 3r3s_A          201 ATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQD-----KIPQFGQQTPMKRAGQPAELAPVYVYLASQ  275 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGG-----GSTTTTTTSTTSSCBCGGGGHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHH-----HHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            99999999999999999887 999999999999998432111100     001111223344556899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       276 ~~~~itG~~i  285 (294)
T 3r3s_A          276 ESSYVTAEVH  285 (294)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCCCCEE
Confidence            9999999864

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=100.00  E-value=9.4e-44  Score=309.19  Aligned_cols=238  Identities=26%  Similarity=0.344  Sum_probs=196.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------------hhHHHHHHHHHHhcCCCeeEEEeecCCC
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR------------ERQLREVADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      +..+++||+++||||++|||+++|++|+++|++|++++|+            .+.+++..+++...+ .++.++.+|++|
T Consensus         7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~   85 (278)
T 3sx2_A            7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-SRIVARQADVRD   85 (278)
T ss_dssp             --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-CCEEEEECCTTC
T ss_pred             CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence            3467899999999999999999999999999999999987            667777777666654 469999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCC
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAA  186 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~  186 (287)
                      +++++++++++.++++++|++|||||+.....     +.++|++.+++|+.+++.++++++|.|.++  +|+||++||..
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~-----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAPMSA-----GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS-----THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC-----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence            99999999999999999999999999875432     247899999999999999999999999764  48999999999


Q ss_pred             CCCCC----CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHH------HHhhh
Q 042560          187 GWLPP----PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQE------IRDVQ  255 (287)
Q Consensus       187 ~~~~~----~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~------~~~~~  255 (287)
                      +..+.    ++...|++||+|+++|++.++.|++++ |+||+|+||+++|++.......+.  ......      .....
T Consensus       161 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  238 (278)
T 3sx2_A          161 GLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREW--LAKMAAATDTPGAMGNA  238 (278)
T ss_dssp             GTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHH--HHHHHHHCC--CTTSCS
T ss_pred             hcCCCccCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHH--Hhhccchhhhhhhhhhh
Confidence            98876    778889999999999999999999987 999999999999998764211000  000000      00011


Q ss_pred             hcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          256 ISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       256 ~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .+ .++.+|||||++++||++++++|+||+.+
T Consensus       239 ~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i  269 (278)
T 3sx2_A          239 MP-VEVLAPEDVANAVAWLVSDQARYITGVTL  269 (278)
T ss_dssp             SS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             cC-cCcCCHHHHHHHHHHHhCcccccccCCEE
Confidence            12 34568999999999999999999999864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=100.00  E-value=1.3e-42  Score=297.10  Aligned_cols=232  Identities=30%  Similarity=0.406  Sum_probs=200.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|+++++++++++.+++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG-AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999999999999999888888776654 368899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.+++|+||++||..+..+.++...|+++|+|
T Consensus        83 g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  161 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDA-DTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQATKFG  161 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCCCCCCcHHHHHHHH
Confidence            999999999998766655553 4578999999999999999999999997655999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC--CCHHHHHHHHHHhhccCCc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV--QPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~evA~~i~~l~~~~~~  280 (287)
                      +++|++.++.|++++ |+||+|+||+++|++......      ....+..... + .++  .+|||+|+.++++++++++
T Consensus       162 ~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~------~~~~~~~~~~-~-~~~~~~~pedvA~~v~~l~s~~~~  233 (247)
T 2jah_A          162 VNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH------TATKEMYEQR-I-SQIRKLQAQDIAEAVRYAVTAPHH  233 (247)
T ss_dssp             HHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC------HHHHHHHHHH-T-TTSCCBCHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc------hhhHHHHHhc-c-cccCCCCHHHHHHHHHHHhCCCcc
Confidence            999999999999887 999999999999998653210      0011112221 2 345  7999999999999999988


Q ss_pred             cccCC
Q 042560          281 YLTQP  285 (287)
Q Consensus       281 ~itG~  285 (287)
                      +++++
T Consensus       234 ~~~~~  238 (247)
T 2jah_A          234 ATVHE  238 (247)
T ss_dssp             EEEEE
T ss_pred             Cccce
Confidence            88764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=100.00  E-value=1e-42  Score=300.18  Aligned_cols=231  Identities=26%  Similarity=0.284  Sum_probs=193.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +++..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|.+++++++++
T Consensus        21 ~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~   99 (262)
T 3rkr_A           21 DKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG-GEAESHACDLSHSDAIAAFATG   99 (262)
T ss_dssp             ----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHH
T ss_pred             cchhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CceeEEEecCCCHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999998888887665 4799999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          119 TMEHFGRLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      +.++++++|++|||||... ..++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...
T Consensus       100 ~~~~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  178 (262)
T 3rkr_A          100 VLAAHGRCDVLVNNAGVGWFGGPLHT-MKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAA  178 (262)
T ss_dssp             HHHHHSCCSEEEECCCCCCCSSCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHH
T ss_pred             HHHhcCCCCEEEECCCccCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCch
Confidence            9999999999999999843 333333 35578999999999999999999999997654 89999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+++|+|+++|++.++.|+++. |+||+|+||+++|++.......               .+..+..+|||+|+++++|+
T Consensus       179 Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---------------~~~~~~~~p~dvA~~v~~l~  243 (262)
T 3rkr_A          179 YTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSAK---------------KSALGAIEPDDIADVVALLA  243 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccccc---------------cccccCCCHHHHHHHHHHHh
Confidence            9999999999999999999887 9999999999999987542110               12234568999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++.+++++|+.
T Consensus       244 s~~~~~~~g~~  254 (262)
T 3rkr_A          244 TQADQSFISEV  254 (262)
T ss_dssp             TCCTTCCEEEE
T ss_pred             cCccccccCcE
Confidence            99999999874

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.1e-43  Score=300.77  Aligned_cols=226  Identities=21%  Similarity=0.223  Sum_probs=189.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc--CCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM--GSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...  +..++.++++|++|.++++++++++.
T Consensus         3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (250)
T 3nyw_A            3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH   82 (250)
T ss_dssp             --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999888888664  22578999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++ + .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++
T Consensus        83 ~~~g~iD~lvnnAg~~~~~~~-~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  160 (250)
T 3nyw_A           83 QKYGAVDILVNAAAMFMDGSL-S-EPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGS  160 (250)
T ss_dssp             HHHCCEEEEEECCCCCCCCCC-S-CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHH
T ss_pred             HhcCCCCEEEECCCcCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHH
Confidence            999999999999999876665 3 34578999999999999999999999997654 89999999999997777999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++.+.....               .+..++.+|||+|+++++|++++
T Consensus       161 sKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~---------------~~~~~~~~p~dva~~v~~l~s~~  225 (250)
T 3nyw_A          161 TKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTP---------------FKDEEMIQPDDLLNTIRCLLNLS  225 (250)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTTCC---------------SCGGGSBCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcCCC---------------cccccCCCHHHHHHHHHHHHcCC
Confidence            9999999999999999987 9999999999999986542210               12233668999999999999987


Q ss_pred             CccccCC
Q 042560          279 DRYLTQP  285 (287)
Q Consensus       279 ~~~itG~  285 (287)
                      +++++++
T Consensus       226 ~~~~~~~  232 (250)
T 3nyw_A          226 ENVCIKD  232 (250)
T ss_dssp             TTEECCE
T ss_pred             CceEeeE
Confidence            7665543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=100.00  E-value=2.3e-43  Score=304.23  Aligned_cols=243  Identities=23%  Similarity=0.303  Sum_probs=202.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++.++++|++|+++++++++++.++
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999998888887776654 36889999999999999999999999


Q ss_pred             cCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.. ...++.+. +.++|++.+++|+.+++.++++++|.|.++ .|+||++||..+..+.++...|+++
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  160 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDY-PSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTS  160 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCCccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHH
Confidence            99999999999987 44444443 457899999999999999999999999764 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc---C--cCCCccchHH-HHhh---hhcCCCCCCHHHHHHH
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL---N--KNGKLEVDQE-IRDV---QISLLPVQPTEECAKA  270 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~---~--~~~~~~~~~~-~~~~---~~~~~~~~~p~evA~~  270 (287)
                      |+++++|++.++.|++++ |+||+|+||+++|++......   .  ........++ ..+.   ..+..++++|||||+.
T Consensus       161 K~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~  240 (262)
T 1zem_A          161 KGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGV  240 (262)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence            999999999999999887 999999999999998643100   0  0000000112 2222   2334456689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      ++||++++++|+||+.+
T Consensus       241 v~~l~s~~~~~itG~~i  257 (262)
T 1zem_A          241 VAFLLGDDSSFMTGVNL  257 (262)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHcCchhcCcCCcEE
Confidence            99999999999999863

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=100.00  E-value=5.1e-43  Score=301.88  Aligned_cols=232  Identities=17%  Similarity=0.148  Sum_probs=184.2

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ...+..|++++|+++||||++|||+++|++|+++|++|++++|+.++..+..+..      .+.++.+|++|++++++++
T Consensus        17 ~~~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~   90 (260)
T 3gem_A           17 LYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA------GAVALYGDFSCETGIMAFI   90 (260)
T ss_dssp             ----------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH------TCEEEECCTTSHHHHHHHH
T ss_pred             cccccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc------CCeEEECCCCCHHHHHHHH
Confidence            3445668899999999999999999999999999999999999987754433332      2778999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||...... .+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++..
T Consensus        91 ~~~~~~~g~iD~lv~nAg~~~~~~-~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~  168 (260)
T 3gem_A           91 DLLKTQTSSLRAVVHNASEWLAET-PG-EEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHI  168 (260)
T ss_dssp             HHHHHHCSCCSEEEECCCCCCCCC-TT-CHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSCH
T ss_pred             HHHHHhcCCCCEEEECCCccCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCcH
Confidence            999999999999999999876554 22 24477899999999999999999999998765 8999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      .|++||+|+++|++.++.|++++|+||+|+||+++|++.....         ..+......+..++++|||+|+++++|+
T Consensus       169 ~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~~---------~~~~~~~~~p~~r~~~~edva~~v~~L~  239 (260)
T 3gem_A          169 AYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDAA---------YRANALAKSALGIEPGAEVIYQSLRYLL  239 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC------------------------CCSCCCCCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCHH---------HHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999987899999999999998753100         0111122234445668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                        +++|+||+.+
T Consensus       240 --~~~~itG~~i  249 (260)
T 3gem_A          240 --DSTYVTGTTL  249 (260)
T ss_dssp             --HCSSCCSCEE
T ss_pred             --hCCCCCCCEE
Confidence              4689999864

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=100.00  E-value=1.5e-43  Score=305.91  Aligned_cols=239  Identities=22%  Similarity=0.264  Sum_probs=201.5

Q ss_pred             CCCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHH-HHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQL-REVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      +.+++++|+++||||+  +|||+++|++|+++|++|++++|+.... ++..+++....+.++.++++|++|.++++++++
T Consensus        14 ~~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~   93 (267)
T 3gdg_A           14 DQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVK   93 (267)
T ss_dssp             HHHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHH
T ss_pred             cccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHH
Confidence            4467899999999999  9999999999999999999999886654 566666654434579999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC--CCC
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP--PRM  194 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~--~~~  194 (287)
                      ++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.  ++.
T Consensus        94 ~~~~~~g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  172 (267)
T 3gdg_A           94 DVVADFGQIDAFIANAGATADSGILDG-SVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQ  172 (267)
T ss_dssp             HHHHHTSCCSEEEECCCCCCCSCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCC
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCCCC
Confidence            999999999999999999877665553 4588999999999999999999999997654 899999999988775  578


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      ..|++||+|+++|++.++.|++++|+||+|+||+++|++.+...       ....+......+..++++|||+|+++++|
T Consensus       173 ~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~-------~~~~~~~~~~~~~~r~~~~~dva~~~~~l  245 (267)
T 3gdg_A          173 TSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVP-------KETQQLWHSMIPMGRDGLAKELKGAYVYF  245 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSC-------HHHHHHHHTTSTTSSCEETHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCC-------HHHHHHHHhcCCCCCCcCHHHHHhHhhee
Confidence            99999999999999999999987799999999999999876321       01122222333344455699999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       246 ~s~~~~~itG~~i  258 (267)
T 3gdg_A          246 ASDASTYTTGADL  258 (267)
T ss_dssp             HSTTCTTCCSCEE
T ss_pred             ecCccccccCCEE
Confidence            9999999999864

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=100.00  E-value=1.3e-43  Score=307.04  Aligned_cols=238  Identities=24%  Similarity=0.291  Sum_probs=195.1

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .+....++++|+++||||++|||+++|++|+++|++|++++|+.+...           ..+..+++|++|+++++++++
T Consensus         5 ~~~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~   73 (269)
T 3vtz_A            5 HHHHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV-----------NVSDHFKIDVTNEEEVKEAVE   73 (269)
T ss_dssp             -----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT-----------TSSEEEECCTTCHHHHHHHHH
T ss_pred             ccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc-----------CceeEEEecCCCHHHHHHHHH
Confidence            345667889999999999999999999999999999999999876531           246788999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...
T Consensus        74 ~~~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  152 (269)
T 3vtz_A           74 KTTKKYGRIDILVNNAGIEQYSPLHLT-PTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAA  152 (269)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHH
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChh
Confidence            999999999999999999876665554 458899999999999999999999998764 489999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcC-CCccchHHHHh---hhhcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKN-GKLEVDQEIRD---VQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~  272 (287)
                      |++||+|+++|++.++.|++++|+||+|+||+++|++......... ......++..+   ...+..++++|||+|++++
T Consensus       153 Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~  232 (269)
T 3vtz_A          153 YVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVA  232 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9999999999999999999877999999999999998654221100 00001122222   3334455668999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++|+||+.+
T Consensus       233 ~L~s~~~~~itG~~i  247 (269)
T 3vtz_A          233 FLASDRSSFITGACL  247 (269)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCCccCCCcCcEE
Confidence            999999999999864

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=1.4e-42  Score=296.55  Aligned_cols=230  Identities=27%  Similarity=0.309  Sum_probs=195.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    +  +.++.+|++|+++++++++++.++
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----G--AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----T--CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999988777655433    1  678899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||.. ..+.++...|+++|
T Consensus        75 ~g~id~lvn~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK  152 (245)
T 1uls_A           75 LGRLDGVVHYAGITRDNFHWKM-PLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANYAASM  152 (245)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHH
Confidence            9999999999998766555443 4578999999999999999999999998754 8999999998 88889999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.....       ....+......+..++.+|||+|+.++++++++++
T Consensus       153 ~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~  225 (245)
T 1uls_A          153 AGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP-------EKVREKAIAATPLGRAGKPLEVAYAALFLLSDESS  225 (245)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC-------HHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC-------HHHHHHHHhhCCCCCCcCHHHHHHHHHHHhCchhc
Confidence            99999999999999887 99999999999999865321       00011111222334466899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+||+.+
T Consensus       226 ~~tG~~~  232 (245)
T 1uls_A          226 FITGQVL  232 (245)
T ss_dssp             TCCSCEE
T ss_pred             CCcCCEE
Confidence            9999853

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=3.1e-43  Score=306.99  Aligned_cols=243  Identities=23%  Similarity=0.323  Sum_probs=198.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------------hhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR------------ERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      .+.++++||+++||||++|||+++|++|+++|++|++++|+            .+.+++...++...+ .++.++.+|++
T Consensus         3 ~~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~   81 (287)
T 3pxx_A            3 GSMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVR   81 (287)
T ss_dssp             TSCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTT
T ss_pred             CcccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCC
Confidence            34567899999999999999999999999999999999997            667777777766554 46999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      |.++++++++++.++++++|++|||||.....  .+ .+.++|++.+++|+.+++.++++++|.| +++|+||++||..+
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~g~iv~isS~~~  157 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLG--AH-LPVQAFADAFDVDFVGVINTVHAALPYL-TSGASIITTGSVAG  157 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC--TT-CCTHHHHHHHHHHTHHHHHHHHHHGGGC-CTTCEEEEECCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCccc--Cc-CCHHHHHHHhhhhhhhhHHHHHHHHHHh-hcCcEEEEeccchh
Confidence            99999999999999999999999999987654  22 3458899999999999999999999998 44689999999887


Q ss_pred             CCCC-----------CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccchHHH
Q 042560          188 WLPP-----------PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVDQEI  251 (287)
Q Consensus       188 ~~~~-----------~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~~~~  251 (287)
                      ..+.           ++...|+++|+++++|++.++.|++++ |+||+|+||+++|+|.+....    .+........+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~  237 (287)
T 3pxx_A          158 LIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADA  237 (287)
T ss_dssp             HHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHH
T ss_pred             cccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHH
Confidence            7654           667889999999999999999999987 999999999999999764210    000000001111


Q ss_pred             Hhh--hhcC--CCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          252 RDV--QISL--LPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       252 ~~~--~~~~--~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ...  ....  .++.+|||||++++||++++++|+||+.+
T Consensus       238 ~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i  277 (287)
T 3pxx_A          238 LLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQF  277 (287)
T ss_dssp             HHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceE
Confidence            111  1111  55678999999999999999999999864

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=3.7e-43  Score=301.70  Aligned_cols=241  Identities=18%  Similarity=0.197  Sum_probs=200.0

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      .+.+....++|+++||||++|||+++|++|+++|++|++++ |+.+..++..+++...+ .++.++.+|++|.+++++++
T Consensus         4 ~~~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~   82 (256)
T 3ezl_A            4 HHHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALG-FDFYASEGNVGDWDSTKQAF   82 (256)
T ss_dssp             ---------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-CeeEEEecCCCCHHHHHHHH
Confidence            34566778999999999999999999999999999999988 66666666666666554 46899999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++..
T Consensus        83 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  161 (256)
T 3ezl_A           83 DKVKAEVGEIDVLVNNAGITRDVVFRKM-TREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQT  161 (256)
T ss_dssp             HHHHHHTCCEEEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCH
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCc
Confidence            9999999999999999999876655554 4588999999999999999999999997654 8999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|+++|+|+++|++.++.|++++ |+||+|+||+++|++.+....       ...+......+..++++|||+|+++++|
T Consensus       162 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~dva~~~~~l  234 (256)
T 3ezl_A          162 NYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRP-------DVLEKIVATIPVRRLGSPDEIGSIVAWL  234 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCH-------HHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCH-------HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999887 999999999999998764310       0112222333445566899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++++||+.+
T Consensus       235 ~s~~~~~~tG~~i  247 (256)
T 3ezl_A          235 ASEESGFSTGADF  247 (256)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCCcccCCcCcEE
Confidence            9999999999864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=100.00  E-value=7.8e-43  Score=301.00  Aligned_cols=244  Identities=25%  Similarity=0.228  Sum_probs=202.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....+.++.++.+|++|+++++++++++.++
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999988888777775541246889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++|
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  161 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEA-ADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTK  161 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCcchHHHHH
Confidence            9999999999998766555543 4478999999999999999999999997644 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhh----hcCCCCCCHHHHHHHHHHhh
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQ----ISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~p~evA~~i~~l~  275 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.......... .....++..+..    .+..++.+|||+|+++++|+
T Consensus       162 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~  241 (263)
T 3ai3_A          162 AALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLC  241 (263)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHc
Confidence            99999999999999887 9999999999999986432110000 000011222222    33445668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       242 s~~~~~~~G~~~  253 (263)
T 3ai3_A          242 SERATYSVGSAY  253 (263)
T ss_dssp             STTCTTCCSCEE
T ss_pred             CccccCCCCcEE
Confidence            999999999853

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=100.00  E-value=7e-44  Score=308.24  Aligned_cols=232  Identities=23%  Similarity=0.295  Sum_probs=193.3

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.+++++|+++||||++|||+++|++|+++|++|++++|+.+..+            ....+.+|++|.++++++++++
T Consensus        21 ~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~------------~~~~~~~Dv~~~~~~~~~~~~~   88 (266)
T 3uxy_A           21 QSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA------------ADLHLPGDLREAAYADGLPGAV   88 (266)
T ss_dssp             -----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC------------CSEECCCCTTSHHHHHHHHHHH
T ss_pred             hhhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH------------hhhccCcCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999876532            1234579999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|+
T Consensus        89 ~~~~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~  167 (266)
T 3uxy_A           89 AAGLGRLDIVVNNAGVISRGRITET-TDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYC  167 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHH
T ss_pred             HHhcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHH
Confidence            9999999999999999877665554 458899999999999999999999999765 48999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l  274 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++.+.......   ...++..+...   +..++++|||+|+++++|
T Consensus       168 asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~---~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L  244 (266)
T 3uxy_A          168 LTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRG---FDPDRAVAELGRTVPLGRIAEPEDIADVVLFL  244 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTT---CCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhccc---ccchHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999987 999999999999998754322111   11122223333   334455899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       245 ~s~~~~~itG~~i  257 (266)
T 3uxy_A          245 ASDAARYLCGSLV  257 (266)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCchhcCCcCCEE
Confidence            9999999999864

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=100.00  E-value=1.2e-42  Score=299.44  Aligned_cols=243  Identities=19%  Similarity=0.231  Sum_probs=198.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.... +.++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (260)
T 2z1n_A            3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD   82 (260)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999998888877775431 22688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++ +|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++
T Consensus        83 ~~g-id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~s  160 (260)
T 2z1n_A           83 LGG-ADILVYSTGGPRPGRFMEL-GVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIM  160 (260)
T ss_dssp             TTC-CSEEEECCCCCCCBCGGGC-CHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             hcC-CCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHH
Confidence            998 9999999998766555443 4578999999999999999999999997654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHH-Hh---hhhcCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEI-RD---VQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++++++++.++.|++++ |+||+|+||+++|++...............++. .+   ...+..++++|||+|+.+++|+
T Consensus       161 K~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~  240 (260)
T 2z1n_A          161 RLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLA  240 (260)
T ss_dssp             THHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------CCTTSSCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHh
Confidence            999999999999999887 999999999999998752211100000000111 11   1223344568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       241 s~~~~~~tG~~i  252 (260)
T 2z1n_A          241 SEKASFITGAVI  252 (260)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CccccCCCCCEE
Confidence            999999999853

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=100.00  E-value=1.1e-42  Score=299.48  Aligned_cols=239  Identities=23%  Similarity=0.374  Sum_probs=202.0

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ...++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++..+.+|++|.++++++++++.
T Consensus         8 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   86 (260)
T 2zat_A            8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG-LSVTGTVCHVGKAEDRERLVAMAV   86 (260)
T ss_dssp             --CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999998888877776554 368889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        87 ~~~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  165 (260)
T 2zat_A           87 NLHGGVDILVSNAAVNPFFGNIID-ATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYN  165 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCCBCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCchhHH
Confidence            999999999999998643 33333 34578999999999999999999999997654 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|+++++|++.++.|+++. |+||+|+||+++|++.......+     ...+......+..++++|||+|+++++|+++
T Consensus       166 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~  240 (260)
T 2zat_A          166 VSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDK-----ARKEYMKESLRIRRLGNPEDCAGIVSFLCSE  240 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSH-----HHHHHHHHHHTCSSCBCGGGGHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccCh-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCc
Confidence            99999999999999999887 99999999999999865321110     0111222333455677899999999999999


Q ss_pred             CCccccCCC
Q 042560          278 GDRYLTQPS  286 (287)
Q Consensus       278 ~~~~itG~~  286 (287)
                      +++|+||+.
T Consensus       241 ~~~~~tG~~  249 (260)
T 2zat_A          241 DASYITGET  249 (260)
T ss_dssp             GGTTCCSCE
T ss_pred             ccCCccCCE
Confidence            999999985

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=7.3e-43  Score=302.26  Aligned_cols=237  Identities=19%  Similarity=0.222  Sum_probs=197.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+++|+++||||++|||+++|++|+++|++|++++ |+.+..++..+++...+ .++.++.+|++|.++++++++++.+
T Consensus        21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (269)
T 3gk3_A           21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAG-RDFKAYAVDVADFESCERCAEKVLA   99 (269)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTT-CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999998 55666666666555443 4699999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|++|
T Consensus       100 ~~g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  178 (269)
T 3gk3_A          100 DFGKVDVLINNAGITRDATFMKM-TKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASA  178 (269)
T ss_dssp             HHSCCSEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCcchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHH
Confidence            99999999999999877665553 4578999999999999999999999987644 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+|+++|++.++.|++++ |+||+|+||+++|++.+.......      ........+..++.+|||+|+++++|+++++
T Consensus       179 Kaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~------~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~  252 (269)
T 3gk3_A          179 KAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVL------EAKILPQIPVGRLGRPDEVAALIAFLCSDDA  252 (269)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCSGGGCTTSSCBCHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHH------HHHhhhcCCcCCccCHHHHHHHHHHHhCCCc
Confidence            999999999999999887 999999999999999875321110      1011122334455689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       253 ~~itG~~i  260 (269)
T 3gk3_A          253 GFVTGADL  260 (269)
T ss_dssp             TTCCSCEE
T ss_pred             CCeeCcEE
Confidence            99999864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=3.9e-43  Score=308.24  Aligned_cols=245  Identities=25%  Similarity=0.306  Sum_probs=202.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCC--eeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ..|++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+..  ++.++.+|++|++++++++++
T Consensus        20 ~m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~   99 (297)
T 1xhl_A           20 HMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINT   99 (297)
T ss_dssp             ---CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999988888877654421  688999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCC--CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-CCCh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCL--FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-PRMS  195 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-~~~~  195 (287)
                      +.++++++|++|||||.....+  +.+ .+.++|++.+++|+.+++.++++++|.|.+++|+||++||..+..+. ++..
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~  178 (297)
T 1xhl_A          100 TLAKFGKIDILVNNAGANLADGTANTD-QPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYP  178 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCSCCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSH
T ss_pred             HHHhcCCCCEEEECCCcCcCCCCcccc-CCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCCCCCcc
Confidence            9999999999999999876544  444 34578999999999999999999999998766999999999998888 8899


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAI  271 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i  271 (287)
                      .|+++|++++++++.++.|++++ |+||+|+||+++|++.......... ....++..+...   +..++.+|||+|+++
T Consensus       179 ~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~r~~~pedvA~~v  257 (297)
T 1xhl_A          179 YYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETA-SDKLYSFIGSRKECIPVGHCGKPEEIANII  257 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHH-HHHHHHHHHHCTTTCTTSSCBCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccccccccc-ccchHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence            99999999999999999999887 9999999999999986532100000 000112222222   233456899999999


Q ss_pred             HHhhccC-CccccCCCC
Q 042560          272 VNSACRG-DRYLTQPSW  287 (287)
Q Consensus       272 ~~l~~~~-~~~itG~~~  287 (287)
                      ++|++++ ++|+||+.+
T Consensus       258 ~~l~s~~~~~~itG~~i  274 (297)
T 1xhl_A          258 VFLADRNLSSYIIGQSI  274 (297)
T ss_dssp             HHHHCHHHHTTCCSCEE
T ss_pred             HHHhCCcccCCccCcEE
Confidence            9999998 899999853

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=100.00  E-value=1.1e-42  Score=299.09  Aligned_cols=237  Identities=26%  Similarity=0.326  Sum_probs=199.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+ .++.++++|++|.++++++++++.++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999999999999999999999999999999998888877776554 368899999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      |++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|+++  .|+||++||..+..+.++...|+++|+++
T Consensus        81 d~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  159 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESI-TPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAV  159 (256)
T ss_dssp             CEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHH
Confidence            999999998766555543 447899999999999999999999999764  48999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc---CcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhcc
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL---NKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +++++.++.|++++ |+||+|+||+++|++......   .....  ..++..+..   .+..++++|||+|+++++|+++
T Consensus       160 ~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~  237 (256)
T 1geg_A          160 RGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGK--PLGYGTAEFAKRITLGRLSEPEDVAACVSYLASP  237 (256)
T ss_dssp             HHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTC--CTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccC--ChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            99999999999887 999999999999998643210   00000  011111222   2334456899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       238 ~~~~~tG~~i  247 (256)
T 1geg_A          238 DSDYMTGQSL  247 (256)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCCCCEE
Confidence            9999999853

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=100.00  E-value=2.2e-42  Score=299.79  Aligned_cols=227  Identities=26%  Similarity=0.310  Sum_probs=181.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.    .++.++.+|++|+++++++++++.+
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~   98 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG----DDALCVPTDVTDPDSVRALFTATVE   98 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT----SCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC----CCeEEEEecCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999998888777662    4688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++|++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|+++   +|+||++||..+..+.++...|
T Consensus        99 ~~g~iD~lVnnAg~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y  177 (272)
T 4dyv_A           99 KFGRVDVLFNNAGTGAPAIPMED-LTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPY  177 (272)
T ss_dssp             HHSCCCEEEECCCCCCCSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHH
T ss_pred             HcCCCCEEEECCCCCCCCCChhh-CCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHH
Confidence            99999999999999755 33444 4558899999999999999999999999765   4899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ++||+|+++|++.++.|++++ |+||+|+||+++|++.+.......       + .....+..++.+|||+|++++||++
T Consensus       178 ~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~-------~-~~~~~~~~~~~~pedvA~~v~fL~s  249 (272)
T 4dyv_A          178 TATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVP-------Q-ADLSIKVEPVMDVAHVASAVVYMAS  249 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC--------------------------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccch-------h-hhhcccccCCCCHHHHHHHHHHHhC
Confidence            999999999999999999987 999999999999999765421110       1 1112234557789999999999999


Q ss_pred             cCCcc
Q 042560          277 RGDRY  281 (287)
Q Consensus       277 ~~~~~  281 (287)
                      ++.+.
T Consensus       250 ~~~~~  254 (272)
T 4dyv_A          250 LPLDA  254 (272)
T ss_dssp             SCTTS
T ss_pred             CCCcC
Confidence            76543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=100.00  E-value=2e-42  Score=296.18  Aligned_cols=233  Identities=23%  Similarity=0.362  Sum_probs=189.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+. +++++   .++..+ .++.++++|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (249)
T 2ew8_A            3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNLG-RRVLTVKCDVSQPGDVEAFGKQVIS   78 (249)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhcC-CcEEEEEeecCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999998 66654   333333 4688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  157 (249)
T 2ew8_A           79 TFGRCDILVNNAGIYPLIPFDEL-TFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYIST  157 (249)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHH
Confidence            99999999999998766555443 4578999999999999999999999997654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcC-CcccCcCCCccchHHHHhhh-hcCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITG-GKFLNKNGKLEVDQEIRDVQ-ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |++++++++.++.|++++ |+||+|+||+++|++.. .....       .++..+.. .+..++.+|||+|+++++|+++
T Consensus       158 K~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~dva~~~~~l~s~  230 (249)
T 2ew8_A          158 KAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSA-------MFDVLPNMLQAIPRLQVPLDLTGAAAFLASD  230 (249)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------------CTTSSSCSCCCTHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccc-------hhhHHHHhhCccCCCCCHHHHHHHHHHHcCc
Confidence            999999999999999887 99999999999999865 22100       00111111 2334467899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       231 ~~~~~tG~~~  240 (249)
T 2ew8_A          231 DASFITGQTL  240 (249)
T ss_dssp             GGTTCCSCEE
T ss_pred             ccCCCCCcEE
Confidence            9999999853

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=100.00  E-value=1.7e-42  Score=299.33  Aligned_cols=235  Identities=17%  Similarity=0.187  Sum_probs=200.2

Q ss_pred             CCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++++|+++||||+  +|||+++|++|+++|++|++++|+....+...+..+..+..++.++.+|++|.++++++++++.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999  6699999999999999999999997665555555555444479999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||....    .++.+ .+.+++++.+++|+.+++.+++.++|.|++ +|+||++||..+..+.++...
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~  160 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLN-TNRDGFLLAHNISSYSLTAVVKAARPMMTE-GGSIVTLTYLGGELVMPNYNV  160 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGCTT-CEEEEEEECGGGTSCCTTTHH
T ss_pred             HHhCCeeEEEEccccccccccccchhh-ccHHHHHHHHHHhHHHHHHHHHHHHhhcCC-CceEEEEecccccccCCCcch
Confidence            999999999999998762    33333 345788999999999999999999999875 689999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~  272 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++......        .++..+   ...+..++.+|||+|++++
T Consensus       161 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~~~~~~~~~p~dva~~v~  232 (266)
T 3oig_A          161 MGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISD--------FNSILKDIEERAPLRRTTTPEEVGDTAA  232 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTT--------HHHHHHHHHHHSTTSSCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccc--------hHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999987 999999999999998765321        122222   2334445568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++++||+.+
T Consensus       233 ~l~s~~~~~~tG~~i  247 (266)
T 3oig_A          233 FLFSDMSRGITGENL  247 (266)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHcCCchhcCcCCEE
Confidence            999999999999864

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=100.00  E-value=1e-42  Score=299.45  Aligned_cols=240  Identities=20%  Similarity=0.205  Sum_probs=198.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH--HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ--LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++|+++||||++|||++++++|+++|++|++++|+.+.  +++..++++..+ .++.++.+|++|+++++++++++.+++
T Consensus         1 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            1 MSKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD-QKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999999999887  777777776544 468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-C-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-K-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ . |+||++||..+..+.++...|+++|
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  158 (258)
T 3a28_C           80 GGFDVLVNNAGIAQIKPLLEV-TEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTK  158 (258)
T ss_dssp             TCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHH
Confidence            999999999998766555443 457899999999999999999999999764 3 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC-ccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK-LEVDQEIRDVQI---SLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++++|++.++.|++++ |+||+|+||+++|++........... ....++..+...   +..++++|||+|+++++|++
T Consensus       159 ~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s  238 (258)
T 3a28_C          159 FAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLAS  238 (258)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhC
Confidence            99999999999999887 99999999999999865311000000 000012222222   33345689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       239 ~~~~~~tG~~i  249 (258)
T 3a28_C          239 ENSNYVTGQVM  249 (258)
T ss_dssp             GGGTTCCSCEE
T ss_pred             cccCCCCCCEE
Confidence            99999999853

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=100.00  E-value=1.1e-42  Score=298.16  Aligned_cols=236  Identities=24%  Similarity=0.315  Sum_probs=174.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..|++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..++++..+ .++.++.+|++|+++++++++++.
T Consensus         3 ~~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            3 GSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999998888887654 478999999999999999999999


Q ss_pred             HhcCCccEEEEccccCC---CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChh
Q 042560          121 EHFGRLDHLVTNAGVVP---MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       121 ~~~~~idvli~nag~~~---~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++++++|++|||||...   ..++.+ .+.++|++.+++|+.+++.++++++|.|+++ +|+||++||..+.   ++...
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~---~~~~~  157 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAIFGGMKLDFLLT-IDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW---LYSNY  157 (253)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGGCTTT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC------------
T ss_pred             HHcCCCCEEEECCCcCCCCCCccccc-CCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc---CCCch
Confidence            99999999999999843   222333 3457889999999999999999999999765 4899999999887   44678


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++........      ..+......+..++++|||+|+++++++
T Consensus       158 Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~dva~~~~~l~  231 (253)
T 3qiv_A          158 YGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKE------MVDDIVKGLPLSRMGTPDDLVGMCLFLL  231 (253)
T ss_dssp             --CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------------CCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHH------HHHHHhccCCCCCCCCHHHHHHHHHHHc
Confidence            9999999999999999999887 99999999999999876432110      0111112223344567999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       232 s~~~~~~tG~~~  243 (253)
T 3qiv_A          232 SDEASWITGQIF  243 (253)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CccccCCCCCEE
Confidence            999999999864

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=100.00  E-value=3.4e-42  Score=300.95  Aligned_cols=240  Identities=22%  Similarity=0.232  Sum_probs=195.2

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCC----HHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSK----VEDCK  113 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~v~  113 (287)
                      ....+++++|+++||||++|||+++|++|+++|++|++++|+. +++++..+++....+.++.++.+|++|    .++++
T Consensus        15 ~~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~   94 (288)
T 2x9g_A           15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCE   94 (288)
T ss_dssp             -------CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHH
T ss_pred             CCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHH
Confidence            3455678999999999999999999999999999999999998 888888777763333568999999999    99999


Q ss_pred             HHHHHHHHhcCCccEEEEccccCCCCCC-----CCC----CCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CC
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGVVPMCLF-----EDY----TDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KG  177 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~~~~~~~-----~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g  177 (287)
                      ++++++.++++++|++|||||.....++     .+.    .+.++|++.+++|+.+++.+++.++|.|+++       .|
T Consensus        95 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g  174 (288)
T 2x9g_A           95 EIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNL  174 (288)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCE
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCe
Confidence            9999999999999999999998765544     220    2346788999999999999999999999764       47


Q ss_pred             EEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh
Q 042560          178 KIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI  256 (287)
Q Consensus       178 ~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  256 (287)
                      +||++||..+..+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++ . ..  .     ...+......
T Consensus       175 ~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~--~-----~~~~~~~~~~  245 (288)
T 2x9g_A          175 SIVNLCDAMVDQPCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG--E-----EEKDKWRRKV  245 (288)
T ss_dssp             EEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC--H-----HHHHHHHHTC
T ss_pred             EEEEEecccccCCCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC--h-----HHHHHHHhhC
Confidence            99999999999999999999999999999999999999887 999999999999998 3 11  0     0011111222


Q ss_pred             cCCCC-CCHHHHHHHHHHhhccCCccccCCCC
Q 042560          257 SLLPV-QPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       257 ~~~~~-~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +..++ ++|||+|+++++|++++++|+||+.+
T Consensus       246 p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i  277 (288)
T 2x9g_A          246 PLGRREASAEQIADAVIFLVSGSAQYITGSII  277 (288)
T ss_dssp             TTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CCCCCCCCHHHHHHHHHHHhCccccCccCCEE
Confidence            34455 78999999999999999999999853

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=100.00  E-value=2e-42  Score=301.22  Aligned_cols=239  Identities=18%  Similarity=0.127  Sum_probs=198.7

Q ss_pred             CCCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ...++++|+++||||+  +|||+++|++|+++|++|++++|+.  .++..+++....+ ++.++.+|++|.+++++++++
T Consensus        20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~   96 (280)
T 3nrc_A           20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFN-PAAVLPCDVISDQEIKDLFVE   96 (280)
T ss_dssp             --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGC-CSEEEECCTTCHHHHHHHHHH
T ss_pred             cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcC-CceEEEeecCCHHHHHHHHHH
Confidence            3456789999999998  7899999999999999999999987  3344444544433 488999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      +.++++++|++|||||....    .++.+..+.+++++.+++|+.+++.++++++|.|++++|+||++||..+..+.++.
T Consensus        97 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~  176 (280)
T 3nrc_A           97 LGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSY  176 (280)
T ss_dssp             HHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTT
T ss_pred             HHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCc
Confidence            99999999999999998764    22222134578899999999999999999999998778999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ..|+++|+|+++|++.++.|++++ |+||+|+||+++|++.......     ....+......+..++.+|||+|+++++
T Consensus       177 ~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-----~~~~~~~~~~~p~~~~~~pedvA~~v~~  251 (280)
T 3nrc_A          177 NTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNF-----KKMLDYNAMVSPLKKNVDIMEVGNTVAF  251 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTH-----HHHHHHHHHHSTTCSCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcch-----HHHHHHHHhcCCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999987 9999999999999987643210     0011222233344556789999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       252 l~s~~~~~~tG~~i  265 (280)
T 3nrc_A          252 LCSDMATGITGEVV  265 (280)
T ss_dssp             TTSGGGTTCCSCEE
T ss_pred             HhCcccCCcCCcEE
Confidence            99999999999864

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=100.00  E-value=5.4e-42  Score=304.94  Aligned_cols=232  Identities=20%  Similarity=0.190  Sum_probs=197.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHH------------
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVE------------  110 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------  110 (287)
                      ++++|+++||||++|||+++|++|+++|++|++++ |+.+.+++..+++....+.++.++.+|++|.+            
T Consensus        43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP  122 (328)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence            47899999999999999999999999999999999 99998888888776323346899999999999            


Q ss_pred             -----HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCC-------------CCCcccchhehhhhHHHHHHHHHHHH
Q 042560          111 -----DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTD-------------ITKPAPAMDINFWGSAYGTYFAIPYL  172 (287)
Q Consensus       111 -----~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~-------------~~~~~~~~~~n~~~~~~l~~~~~~~l  172 (287)
                           +++++++++.++++++|++|||||.....++.+..+             .++|++.+++|+.+++.++++++|.|
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m  202 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  202 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 999999999999999999999999876655544320             46788999999999999999999999


Q ss_pred             hcC-------CCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC
Q 042560          173 KQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK  244 (287)
Q Consensus       173 ~~~-------~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~  244 (287)
                      .++       .|+||++||..+..+.++...|+++|+|+++|++.++.|+++. |+||+|+||+++|++ ...       
T Consensus       203 ~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~~-------  274 (328)
T 2qhx_A          203 AGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-DMP-------  274 (328)
T ss_dssp             HHSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-CSC-------
T ss_pred             HhcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-ccc-------
Confidence            764       4799999999999999999999999999999999999999887 999999999999998 321       


Q ss_pred             ccchHHHHhhhh---cCC-CCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          245 LEVDQEIRDVQI---SLL-PVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       245 ~~~~~~~~~~~~---~~~-~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                          ++..+...   +.. ++++|||+|+++++|++++++|+||+.+
T Consensus       275 ----~~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i  317 (328)
T 2qhx_A          275 ----PAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV  317 (328)
T ss_dssp             ----HHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             ----HHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence                12222222   233 4568999999999999999999999853

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=100.00  E-value=1.5e-42  Score=299.95  Aligned_cols=230  Identities=23%  Similarity=0.333  Sum_probs=194.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||+++|++|+++|++|++++|+.+++++..       ..++..+.+|++|.++++++++++.++
T Consensus        12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (266)
T 3p19_A           12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-------LPNTLCAQVDVTDKYTFDTAITRAEKI   84 (266)
T ss_dssp             ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-------CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-------cCCceEEEecCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999987765432       225888999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++||
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK  163 (266)
T 3p19_A           85 YGPADAIVNNAGMMLLGQIDTQ-EANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTK  163 (266)
T ss_dssp             HCSEEEEEECCCCCCCCCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHH
Confidence            9999999999999877666554 458899999999999999999999999764 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|+++|++.++.|++++ |+||+|+||+++|++.......     ...+.......+..++.+|||||++++|+++++++
T Consensus       164 ~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-----~~~~~~~~~~~~~~r~~~pedvA~av~~l~~~~~~  238 (266)
T 3p19_A          164 FAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQ-----QIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQN  238 (266)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCH-----HHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccch-----hhhHHHHhhcccccCCCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999987 9999999999999987643210     01111222233556677899999999999999988


Q ss_pred             cccCC
Q 042560          281 YLTQP  285 (287)
Q Consensus       281 ~itG~  285 (287)
                      +++++
T Consensus       239 ~~~~~  243 (266)
T 3p19_A          239 VCIRE  243 (266)
T ss_dssp             EEEEE
T ss_pred             cccee
Confidence            87764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=8.5e-43  Score=303.56  Aligned_cols=242  Identities=24%  Similarity=0.289  Sum_probs=200.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCC--eeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+..  ++.++.+|++|+++++++++++.+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999888887777654321  688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCC----CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-CCChh
Q 042560          122 HFGRLDHLVTNAGVVPMCL----FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-PRMSF  196 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~----~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-~~~~~  196 (287)
                      +++++|++|||||.....+    +.+ .+.++|++.+++|+.+++.++++++|.|.+++|+||++||..+..+. ++...
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~  161 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTD-QGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLY  161 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSHH
T ss_pred             hcCCCCEEEECCCCCCCCCCCccccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCCCCcccH
Confidence            9999999999999876544    333 34578999999999999999999999997656999999999998887 88999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~  272 (287)
                      |+++|+++++|++.++.|++++ |+||+|+||+++|++......... .....++..+...   +..++.+|||+|++++
T Consensus       162 Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~  240 (280)
T 1xkq_A          162 YAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQ-ASQKFYNFMASHKECIPIGAAGKPEHIANIIL  240 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHH-HHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccc-cccchHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999887 999999999999998653210000 0000112222222   2334568999999999


Q ss_pred             HhhccC-CccccCCCC
Q 042560          273 NSACRG-DRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~-~~~itG~~~  287 (287)
                      +|++++ ++|+||+.+
T Consensus       241 ~l~s~~~~~~~tG~~i  256 (280)
T 1xkq_A          241 FLADRNLSFYILGQSI  256 (280)
T ss_dssp             HHHCHHHHTTCCSCEE
T ss_pred             HhcCcccccCccCCeE
Confidence            999998 899999853

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=100.00  E-value=2.5e-42  Score=300.22  Aligned_cols=242  Identities=23%  Similarity=0.265  Sum_probs=202.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.++++++++++.+++
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999999999998888877776554 368899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHH--HhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPY--LKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.  |++++ |+||++||..+..+.++...|+++
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~as  176 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAEL-ADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSAS  176 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCCCccHHHH
Confidence            999999999998766555443 44789999999999999999999998  87654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHHh---hhhcCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRD---VQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++++++++.++.|+++. |+||+|+||+++|++............ ...++..+   ...+..++.+|||+|+++++|+
T Consensus       177 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~  256 (277)
T 2rhc_B          177 KHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLI  256 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999988 999999999999998643210000000 00012122   2223445668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       257 s~~~~~~tG~~~  268 (277)
T 2rhc_B          257 GPGAAAVTAQAL  268 (277)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhcCCCCcEE
Confidence            999999999853

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=100.00  E-value=2.6e-42  Score=296.41  Aligned_cols=232  Identities=28%  Similarity=0.343  Sum_probs=197.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    +.++.++.+|++|+++++++++++.+++
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999999988877765554    2358889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++|+
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  156 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETE-SVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKW  156 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHH
Confidence            999999999998766555443 4578999999999999999999999997654 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC-CHHHHHHHHHHhhccCCc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ-PTEECAKAIVNSACRGDR  280 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~evA~~i~~l~~~~~~  280 (287)
                      +++++++.++.|+++. |+||+|+||+++|++..... .. .    .+.. ....+..++. +|||+|+.+++|++++++
T Consensus       157 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~-~----~~~~-~~~~p~~~~~~~~~dvA~~v~~l~s~~~~  229 (254)
T 1hdc_A          157 GVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETG-IR-Q----GEGN-YPNTPMGRVGNEPGEIAGAVVKLLSDTSS  229 (254)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHT-CC-C----STTS-CTTSTTSSCB-CHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccc-hh-H----HHHH-HhcCCCCCCCCCHHHHHHHHHHHhCchhc
Confidence            9999999999999877 99999999999999865321 00 0    0011 1112333466 899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      ++||+.+
T Consensus       230 ~~tG~~~  236 (254)
T 1hdc_A          230 YVTGAEL  236 (254)
T ss_dssp             TCCSCEE
T ss_pred             CCCCCEE
Confidence            9999853

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=100.00  E-value=2e-42  Score=299.17  Aligned_cols=240  Identities=20%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             hhccCCCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      +.+....++++|+++||||+  +|||+++|++|+++|++|++++|+....+.. +++....+ .+.++.+|++|++++++
T Consensus         4 ~~~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~Dv~~~~~v~~   81 (271)
T 3ek2_A            4 HHHHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRI-TEFAAEFG-SELVFPCDVADDAQIDA   81 (271)
T ss_dssp             -----CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHHHTT-CCCEEECCTTCHHHHHH
T ss_pred             CCCCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHH-HHHHHHcC-CcEEEECCCCCHHHHHH
Confidence            34556778899999999999  9999999999999999999999986544433 33433333 47889999999999999


Q ss_pred             HHHHHHHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP  190 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~  190 (287)
                      +++++.++++++|++|||||+...    .++.+..+.+++++.+++|+.+++.+++.++|.|++ +|+||++||..+..+
T Consensus        82 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~g~iv~isS~~~~~~  160 (271)
T 3ek2_A           82 LFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD-DASLLTLSYLGAERA  160 (271)
T ss_dssp             HHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE-EEEEEEEECGGGTSB
T ss_pred             HHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CceEEEEeccccccC
Confidence            999999999999999999998765    334342355789999999999999999999999875 689999999999999


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHH
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEE  266 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~e  266 (287)
                      .++...|++||+|+++|++.++.|++++ |+||+|+||+++|++......        .++..+   ...+..++.+|||
T Consensus       161 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ped  232 (271)
T 3ek2_A          161 IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKS--------FGKILDFVESNSPLKRNVTIEQ  232 (271)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHH--------HHHHHHHHHHHSTTSSCCCHHH
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccc--------hHHHHHHHHhcCCcCCCCCHHH
Confidence            9999999999999999999999999887 999999999999998765321        122223   3334445668999


Q ss_pred             HHHHHHHhhccCCccccCCCC
Q 042560          267 CAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       267 vA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|+.+++|++++++++||+.|
T Consensus       233 va~~i~~l~s~~~~~~tG~~i  253 (271)
T 3ek2_A          233 VGNAGAFLLSDLASGVTAEVM  253 (271)
T ss_dssp             HHHHHHHHHSGGGTTCCSEEE
T ss_pred             HHHHHHHHcCcccCCeeeeEE
Confidence            999999999999999999853

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=100.00  E-value=7.7e-43  Score=309.73  Aligned_cols=235  Identities=24%  Similarity=0.300  Sum_probs=200.5

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC----------hhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR----------ERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      .+..+++||+++||||++|||+++|++|+++|++|++++|+          .+.+++..+++...+ .++.++.+|++|.
T Consensus        20 ~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           20 GSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG-GEAVADGSNVADW   98 (322)
T ss_dssp             --CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT-CEEEEECCCTTSH
T ss_pred             chhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC-CcEEEEECCCCCH
Confidence            34456789999999999999999999999999999999998          677788888877665 4789999999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEE
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVV  182 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~i  182 (287)
                      ++++++++++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|.+.       +|+||++
T Consensus        99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~i  177 (322)
T 3qlj_A           99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANT-SEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINT  177 (322)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEE
Confidence            99999999999999999999999999877665554 558899999999999999999999998642       2799999


Q ss_pred             cCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC
Q 042560          183 ASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV  261 (287)
Q Consensus       183 sS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (287)
                      ||..+..+.++...|++||+|+++|++.++.|++++ |+||+|+|| ++|+|........          ..........
T Consensus       178 sS~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~----------~~~~~~~~~~  246 (322)
T 3qlj_A          178 SSGAGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM----------MATQDQDFDA  246 (322)
T ss_dssp             CCHHHHHCBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC------------------CCT
T ss_pred             cCHHHccCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh----------hhccccccCC
Confidence            999999999999999999999999999999999987 999999999 9999886543211          0111122344


Q ss_pred             CCHHHHHHHHHHhhccCCccccCCCC
Q 042560          262 QPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       262 ~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .+|||+|++++||++++++|+||+.+
T Consensus       247 ~~pedva~~v~~L~s~~~~~itG~~i  272 (322)
T 3qlj_A          247 MAPENVSPLVVWLGSAEARDVTGKVF  272 (322)
T ss_dssp             TCGGGTHHHHHHHTSGGGGGCCSCEE
T ss_pred             CCHHHHHHHHHHHhCccccCCCCCEE
Confidence            68999999999999999999999864

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=100.00  E-value=2.4e-42  Score=297.97  Aligned_cols=234  Identities=21%  Similarity=0.222  Sum_probs=189.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++.+|+++||||++|||+++|++|+++|++|++++|+.....+...+.....+.++.++.+|++|+++++++++++.++
T Consensus         3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999887655443333332222347999999999999999999999999


Q ss_pred             cCCccEEEEcccc--CCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCC-CC-CCCCCCChhh
Q 042560          123 FGRLDHLVTNAGV--VPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASA-AG-WLPPPRMSFY  197 (287)
Q Consensus       123 ~~~idvli~nag~--~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~-~~-~~~~~~~~~Y  197 (287)
                      ++++|++|||||.  ....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||. .+ ..+.++...|
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y  161 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDY-EEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAF  161 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHH
T ss_pred             hCCCCEEEECCcccccCCCccccC-CHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchh
Confidence            9999999999994  333444443 4478999999999999999999999997655 899999988 44 5677788999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~  273 (287)
                      +++|+|+++|++.++.|++++ |+||+|+||+++|++.....          ++..+.   ..+..++.+|||+|+++++
T Consensus       162 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----------~~~~~~~~~~~p~~r~~~~~dva~~v~~  231 (264)
T 3i4f_A          162 AAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATI----------QEARQLKEHNTPIGRSGTGEDIARTISF  231 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCH----------HHHHHC--------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhcc----------HHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999887 99999999999999876532          222222   2334445689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++++||+.+
T Consensus       232 l~s~~~~~itG~~i  245 (264)
T 3i4f_A          232 LCEDDSDMITGTII  245 (264)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HcCcccCCCCCcEE
Confidence            99999999999864

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=100.00  E-value=8.4e-43  Score=299.88  Aligned_cols=230  Identities=19%  Similarity=0.203  Sum_probs=182.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..|++++|+++||||++|||+++|++|+++|++|++++|+.++..+   ++    +.++.++++|++|+++++++++.+.
T Consensus         3 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (257)
T 3tl3_A            3 GSMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA---DL----GDRARFAAADVTDEAAVASALDLAE   75 (257)
T ss_dssp             -------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHH---HT----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHH---hc----CCceEEEECCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999997654322   21    3468999999999999999999887


Q ss_pred             HhcCCccEEEEccccCCCCCCCC---CCCCCCcccchhehhhhHHHHHHHHHHHHhc--------C-CCEEEEEcCCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFED---YTDITKPAPAMDINFWGSAYGTYFAIPYLKQ--------T-KGKIIVVASAAGW  188 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~--------~-~g~iv~isS~~~~  188 (287)
                      + ++++|++|||||.........   ..+.++|++.+++|+.+++.++++++|.|.+        + +|+||++||..+.
T Consensus        76 ~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tl3_A           76 T-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF  154 (257)
T ss_dssp             H-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred             H-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence            7 899999999999875432211   1344789999999999999999999999976        3 4899999999999


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-CCCCCHHH
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-LPVQPTEE  266 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~e  266 (287)
                      .+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++......       ...+......+. .++++|||
T Consensus       155 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~~~~~r~~~p~d  227 (257)
T 3tl3_A          155 DGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPE-------EARASLGKQVPHPSRLGNPDE  227 (257)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CH-------HHHHHHHHTSSSSCSCBCHHH
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccH-------HHHHHHHhcCCCCCCccCHHH
Confidence            999999999999999999999999999987 999999999999998764210       011112222233 55678999


Q ss_pred             HHHHHHHhhccCCccccCCCC
Q 042560          267 CAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       267 vA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|+++++|+++  +|+||+.+
T Consensus       228 va~~v~~l~s~--~~itG~~i  246 (257)
T 3tl3_A          228 YGALAVHIIEN--PMLNGEVI  246 (257)
T ss_dssp             HHHHHHHHHHC--TTCCSCEE
T ss_pred             HHHHHHHHhcC--CCCCCCEE
Confidence            99999999987  79999864

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=100.00  E-value=3.9e-42  Score=295.16  Aligned_cols=231  Identities=23%  Similarity=0.300  Sum_probs=184.7

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ..+.+..++++|+++||||++|||++++++|+++|++|++++|+.++++            .+..+++|++|++++++++
T Consensus        11 ~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~Dl~d~~~v~~~~   78 (253)
T 2nm0_A           11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE------------GFLAVKCDITDTEQVEQAY   78 (253)
T ss_dssp             ---------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT------------TSEEEECCTTSHHHHHHHH
T ss_pred             CCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc------------cceEEEecCCCHHHHHHHH
Confidence            3455667789999999999999999999999999999999999876432            2678899999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++..
T Consensus        79 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~  157 (253)
T 2nm0_A           79 KEIEETHGPVEVLIANAGVTKDQLLMRM-SEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQA  157 (253)
T ss_dssp             HHHHHHTCSCSEEEEECSCCTTTC---C-CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHH
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCcH
Confidence            9999999999999999998866655554 458899999999999999999999999764 48999999999998888889


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|+++|+++++|++.++.|+++. |+||+|+||+++|++.....  +    . ..+......+..++.+|||+|+.++++
T Consensus       158 ~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~----~-~~~~~~~~~p~~~~~~p~dvA~~i~~l  230 (253)
T 2nm0_A          158 NYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLT--D----E-QRANIVSQVPLGRYARPEEIAATVRFL  230 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC----------------CHHHHHTTCTTCSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcC--H----H-HHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999987 99999999999999865321  0    0 011111222334466899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       231 ~s~~~~~~tG~~i  243 (253)
T 2nm0_A          231 ASDDASYITGAVI  243 (253)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCccccCCcCcEE
Confidence            9999999999853

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=100.00  E-value=7.7e-42  Score=295.49  Aligned_cols=235  Identities=21%  Similarity=0.258  Sum_probs=198.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ....++++|+++||||++|||+++|++|+++|++|++ ..|+.+..++..+++...+ .++.++.+|++|++++++++++
T Consensus        19 ~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~   97 (267)
T 4iiu_A           19 YFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANG-GNGRLLSFDVANREQCREVLEH   97 (267)
T ss_dssp             ------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred             hhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHH
Confidence            3445678999999999999999999999999999966 4577777888887777665 3689999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCCCCCCCChh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK--QTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~--~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +.++++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.+++.|.  +.+|+||++||..+..+.++...
T Consensus        98 ~~~~~g~id~li~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  176 (267)
T 4iiu_A           98 EIAQHGAWYGVVSNAGIARDAAFPAL-SNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVN  176 (267)
T ss_dssp             HHHHHCCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCHH
T ss_pred             HHHHhCCccEEEECCCCCCCCccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCch
Confidence            99999999999999999877665554 4588999999999999999999998874  34589999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~  272 (287)
                      |+++|+|+++|++.++.|++++ |+||+|+||+++|++....           ++..+   ...+..++++|||+|++++
T Consensus       177 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----------~~~~~~~~~~~p~~~~~~~edva~~~~  245 (267)
T 4iiu_A          177 YSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----------ESALKEAMSMIPMKRMGQAEEVAGLAS  245 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----------HHHHHHHHHTCTTCSCBCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----------HHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9999999999999999999887 9999999999999987532           12222   2233444568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +|++++++|+||+.+
T Consensus       246 ~L~s~~~~~itG~~i  260 (267)
T 4iiu_A          246 YLMSDIAGYVTRQVI  260 (267)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCCcccCccCCEE
Confidence            999999999999864

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=7.3e-42  Score=297.18  Aligned_cols=244  Identities=23%  Similarity=0.292  Sum_probs=191.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh--cCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL--MGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++..  ..+.++.++.+|++|+++++++++++.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988887777632  1234688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCC---CCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC-CCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDY---TDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-WLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~-~~~~~~~~~Y  197 (287)
                      +++++|++|||||.....++.+.   .+.++|++.+++|+.+++.++++++|.|++++|+||++||..+ ..+.++...|
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y  162 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYY  162 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTSHHH
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccccCCCCccHH
Confidence            99999999999998765544332   1447789999999999999999999999776699999999998 8888999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccch--HHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVD--QEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +++|++++++++.++.|++++ |+||+|+||+++|++...............  .+......+..++.+|+|+|+++++|
T Consensus       163 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l  242 (278)
T 1spx_A          163 SIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL  242 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHH
Confidence            999999999999999999887 999999999999998654211110000000  11111222334566899999999999


Q ss_pred             hccCCcc-ccCCCC
Q 042560          275 ACRGDRY-LTQPSW  287 (287)
Q Consensus       275 ~~~~~~~-itG~~~  287 (287)
                      +++++++ +||+.+
T Consensus       243 ~s~~~~~~~tG~~~  256 (278)
T 1spx_A          243 ADRKTSSYIIGHQL  256 (278)
T ss_dssp             HCHHHHTTCCSCEE
T ss_pred             cCccccCcccCcEE
Confidence            9988887 999853

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=100.00  E-value=3.7e-42  Score=296.17  Aligned_cols=241  Identities=18%  Similarity=0.198  Sum_probs=199.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHH---cCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYAR---RRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~---~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .++++|+++||||++|||++++++|++   +|++|++++|+.+.+++..+++.... +.++.++.+|++|++++++++++
T Consensus         2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   81 (259)
T 1oaa_A            2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence            357899999999999999999999999   89999999999999888888776542 45789999999999999999999


Q ss_pred             HHH--hcCCcc--EEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--C-CEEEEEcCCCCCC
Q 042560          119 TME--HFGRLD--HLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--K-GKIIVVASAAGWL  189 (287)
Q Consensus       119 ~~~--~~~~id--vli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~-g~iv~isS~~~~~  189 (287)
                      +.+  .++++|  ++|||||....  .++.+..+.++|++.+++|+.+++.++++++|.|+++  + |+||++||..+..
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence            988  678898  99999998643  2333323457899999999999999999999999775  3 8999999999999


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      +.++...|++||+|+++|++.++.|+++ |+||+|+||+++|+|......... . ....+......+..++++|||+|+
T Consensus       162 ~~~~~~~Y~asKaa~~~~~~~la~e~~~-i~vn~v~PG~v~T~~~~~~~~~~~-~-~~~~~~~~~~~p~~~~~~p~dvA~  238 (259)
T 1oaa_A          162 PYKGWGLYCAGKAARDMLYQVLAAEEPS-VRVLSYAPGPLDNDMQQLARETSK-D-PELRSKLQKLKSDGALVDCGTSAQ  238 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHCTT-EEEEEEECCSBSSHHHHHHHHHCS-C-HHHHHHHHHHHHTTCSBCHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhhCCC-ceEEEecCCCcCcchHHHHhhccC-C-hhHHHHHHHhhhcCCcCCHHHHHH
Confidence            9999999999999999999999999976 999999999999998653211000 0 001122223334566789999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      .+++++++ ++|+||+.+
T Consensus       239 ~v~~l~~~-~~~itG~~i  255 (259)
T 1oaa_A          239 KLLGLLQK-DTFQSGAHV  255 (259)
T ss_dssp             HHHHHHHH-CCSCTTEEE
T ss_pred             HHHHHHhh-ccccCCcEE
Confidence            99999996 689999853

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.8e-42  Score=300.10  Aligned_cols=235  Identities=26%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.     .+.++.+|++|+++++++++++.+
T Consensus         4 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~   78 (270)
T 1yde_A            4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP-----GAVFILCDVTQEDDVKTLVSETIR   78 (270)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CCeEEEcCCCCHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999888776655431     378899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.... .++.+ .+.++|++.+++|+.+++.++++++|.|++++|+||++||..+..+.++...|+++
T Consensus        79 ~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  157 (270)
T 1yde_A           79 RFGRLDCVVNNAGHHPPPQRPEE-TSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVAT  157 (270)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCCcccHHH
Confidence            99999999999998754 33333 34578999999999999999999999997667999999999998888999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++++++.++.|++++ |+||+|+||+++|++.........    ...+...   ...+..++++|||+|+.++||++
T Consensus       158 Kaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s  233 (270)
T 1yde_A          158 KGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMP----DPRASIREGMLAQPLGRMGQPAEVGAAAVFLAS  233 (270)
T ss_dssp             HHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSS----SHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhccc----chHHHHHHHhhcCCCCCCcCHHHHHHHHHHHcc
Confidence            999999999999999887 999999999999998643211000    0111111   12233445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      + ++|+||+.+
T Consensus       234 ~-~~~itG~~i  243 (270)
T 1yde_A          234 E-ANFCTGIEL  243 (270)
T ss_dssp             H-CTTCCSCEE
T ss_pred             c-CCCcCCCEE
Confidence            8 799999853

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=2.9e-42  Score=297.60  Aligned_cols=227  Identities=29%  Similarity=0.376  Sum_probs=193.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.    .++.++.+|++|.++++++++++.+++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999999999888776655442    358899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.| +++|+||++||..+. +.++...|+++|++
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~g~iv~isS~~~~-~~~~~~~Y~asK~a  155 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNL-PLEAWEKVLRVNLTGSFLVARKAGEVL-EEGGSLVLTGSVAGL-GAFGLAHYAAGKLG  155 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CTTCEEEEECCCTTC-CHHHHHHHHHCSSH
T ss_pred             CCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHH-hcCCEEEEEecchhc-CCCCcHHHHHHHHH
Confidence            999999999998766555443 447899999999999999999999999 547899999999998 87888999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++++++.++.|++++ |+||+|+||+++|++....          .++..+.   ..+..++.+|||+|+.+++++++++
T Consensus       156 ~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----------~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~  225 (263)
T 2a4k_A          156 VVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL----------PPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEES  225 (263)
T ss_dssp             HHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS----------CHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc----------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccc
Confidence            999999999999887 9999999999999987542          1122222   2233445689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       226 ~~~tG~~i  233 (263)
T 2a4k_A          226 AYITGQAL  233 (263)
T ss_dssp             TTCCSCEE
T ss_pred             cCCcCCEE
Confidence            99999853

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=5.9e-42  Score=294.47  Aligned_cols=236  Identities=24%  Similarity=0.286  Sum_probs=194.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++ ++..+++.     + .++++|++|+++++++++++.++
T Consensus         2 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-----~-~~~~~D~~~~~~~~~~~~~~~~~   74 (256)
T 2d1y_A            2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG-----G-AFFQVDLEDERERVRFVEEAAYA   74 (256)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT-----C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh-----C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999877 65555542     3 67889999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++||
T Consensus        75 ~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  153 (256)
T 2d1y_A           75 LGRVDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASK  153 (256)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHH
Confidence            9999999999998866555543 4478999999999999999999999998755 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.|+++. |+||+|+||+++|++............... +......+..++.+|||+|+++++|++++++
T Consensus       154 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~  232 (256)
T 2d1y_A          154 GGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTR-RDWEDLHALRRLGKPEEVAEAVLFLASEKAS  232 (256)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------C-HHHHTTSTTSSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHH-HHHHhcCCCCCCcCHHHHHHHHHHHhCchhc
Confidence            99999999999999887 999999999999998643210000000000 1111222334456899999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+||+.+
T Consensus       233 ~~~G~~~  239 (256)
T 2d1y_A          233 FITGAIL  239 (256)
T ss_dssp             TCCSCEE
T ss_pred             CCCCCEE
Confidence            9999853

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=100.00  E-value=8.2e-42  Score=305.50  Aligned_cols=228  Identities=24%  Similarity=0.279  Sum_probs=198.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-------HHHHHHHHHhcCCCeeEEEeecCCCHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-------LREVADQAELMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      +..+++||+++||||++|||+++|++|+++|++|++++|+.++       +++..++++..+ .++.++.+|++|+++++
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g-~~~~~~~~Dv~d~~~v~  117 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG-GKALPCIVDVRDEQQIS  117 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT-CEEEEEECCTTCHHHHH
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHH
Confidence            4577899999999999999999999999999999999998764       556666666654 47999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--  190 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--  190 (287)
                      ++++++.++++++|++|||||.....++.+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..+..+  
T Consensus       118 ~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~  196 (346)
T 3kvo_A          118 AAVEKAIKKFGGIDILVNNASAISLTNTLDT-PTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVW  196 (346)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGG
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCC
Confidence            9999999999999999999999877666554 4588999999999999999999999998765 89999999999887  


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCc-ccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHH
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGL-IESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA  268 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~-v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA  268 (287)
                      .++...|++||+++++|++.++.|++ . |+||+|+||+ ++|++.+....               ..+..++.+|||+|
T Consensus       197 ~~~~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~~~~~---------------~~~~~r~~~pedvA  260 (346)
T 3kvo_A          197 FKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLGG---------------PGIESQCRKVDIIA  260 (346)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSBCBCCHHHHHHCC-----------------CGGGCBCTHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCccccHHHHhhcc---------------ccccccCCCHHHHH
Confidence            78899999999999999999999999 6 9999999995 99987542211               01223466899999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      +++++|+++ ++++||+.+
T Consensus       261 ~~v~~L~s~-~~~itG~~i  278 (346)
T 3kvo_A          261 DAAYSIFQK-PKSFTGNFV  278 (346)
T ss_dssp             HHHHHHHTS-CTTCCSCEE
T ss_pred             HHHHHHHhc-CCCCCceEE
Confidence            999999999 999999853

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=100.00  E-value=1.6e-41  Score=287.93  Aligned_cols=224  Identities=26%  Similarity=0.246  Sum_probs=195.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++.++.+|++|+++++++++++.+++++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999999999999999999998888876433457999999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      +|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++|++|+++|..+..+.++...|+++|++++
T Consensus        81 id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~  159 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEEL-SEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGGGYVSTKWAAR  159 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCccccccCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCcchHHHHHHHHH
Confidence            9999999999877666554 458899999999999999999999999777799999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCC
Q 042560          206 ALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQP  285 (287)
Q Consensus       206 ~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~  285 (287)
                      ++++.++.+ .+.|+||+|+||+++|++........               ...++.+|||+|+++++|+++++++++|+
T Consensus       160 ~~~~~l~~~-~~~i~v~~v~PG~v~T~~~~~~~~~~---------------~~~~~~~p~dva~~v~~l~~~~~~~~~~~  223 (235)
T 3l77_A          160 ALVRTFQIE-NPDVRFFELRPGAVDTYFGGSKPGKP---------------KEKGYLKPDEIAEAVRCLLKLPKDVRVEE  223 (235)
T ss_dssp             HHHHHHHHH-CTTSEEEEEEECSBSSSTTTCCSCCC---------------GGGTCBCHHHHHHHHHHHHTSCTTCCCCE
T ss_pred             HHHHHHhhc-CCCeEEEEEeCCccccccccccCCcc---------------cccCCCCHHHHHHHHHHHHcCCCCCccce
Confidence            999999555 22399999999999999976532211               01146789999999999999999999987


Q ss_pred             C
Q 042560          286 S  286 (287)
Q Consensus       286 ~  286 (287)
                      .
T Consensus       224 ~  224 (235)
T 3l77_A          224 L  224 (235)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=100.00  E-value=1e-41  Score=297.12  Aligned_cols=243  Identities=24%  Similarity=0.347  Sum_probs=199.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.++ .++..+++...+ .++.++.+|++|.++++++++++
T Consensus        23 ~~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~  101 (283)
T 1g0o_A           23 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-SDAACVKANVGVVEDIVRMFEEA  101 (283)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999998764 455556665544 46889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC-Chhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR-MSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~-~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.| ++.|+||++||..+..+.+. ...|+
T Consensus       102 ~~~~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~g~iv~isS~~~~~~~~~~~~~Y~  179 (283)
T 1g0o_A          102 VKIFGKLDIVCSNSGVVSFGHVKDV-TPEEFDRVFTINTRGQFFVAREAYKHL-EIGGRLILMGSITGQAKAVPKHAVYS  179 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHS-CTTCEEEEECCGGGTCSSCSSCHHHH
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHH-hcCCeEEEEechhhccCCCCCCcchH
Confidence            9999999999999998766555543 457899999999999999999999999 44689999999999887664 89999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccC--cCCCccchHHHHhh-----hhcCCCCCCHHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLN--KNGKLEVDQEIRDV-----QISLLPVQPTEECAKA  270 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~p~evA~~  270 (287)
                      +||+++++|++.++.|++++ |+||+|+||+++|++.......  ..... ..++..+.     ..+..++++|||+|++
T Consensus       180 asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~r~~~p~dvA~~  258 (283)
T 1g0o_A          180 GSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGEN-LSNEEVDEYAAVQWSPLRRVGLPIDIARV  258 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTT-CCHHHHHHHHHHHSCTTCSCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccc-cCHHHHHHHHhhcCCCCCCCcCHHHHHHH
Confidence            99999999999999999887 9999999999999986542111  00000 01222222     2233445689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++|++++++|+||+.+
T Consensus       259 v~~l~s~~~~~itG~~i  275 (283)
T 1g0o_A          259 VCFLASNDGGWVTGKVI  275 (283)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHhCccccCcCCCEE
Confidence            99999999999999853

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=100.00  E-value=5.4e-42  Score=294.08  Aligned_cols=236  Identities=21%  Similarity=0.300  Sum_probs=200.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++|+++||||++|||++++++|+++|++|+++ .|+.+..++..+++...+ .++..+.+|++|.++++++++++.++
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG-GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC-CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999885 677788888887777654 47899999999999999999998887


Q ss_pred             cC------CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChh
Q 042560          123 FG------RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       123 ~~------~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++      ++|++|||||......+.+. +.++|++.+++|+.+++.+++.++|.|++ +|+||++||..+..+.++...
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~~~iv~isS~~~~~~~~~~~~  160 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEET-TEQFFDRMVSVNAKAPFFIIQQALSRLRD-NSRIINISSAATRISLPDFIA  160 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEECCGGGTSCCTTBHH
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhC-CHHHHHHHHhhhchHHHHHHHHHHHhhCC-CCEEEEeCChhhccCCCCcch
Confidence            64      49999999998766655553 45789999999999999999999999843 689999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |++||+|+++|++.++.|++++ |+||+|+||+++|++........     ...+......+..++++|||+|+++++|+
T Consensus       161 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dva~~~~~l~  235 (255)
T 3icc_A          161 YSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDP-----MMKQYATTISAFNRLGEVEDIADTAAFLA  235 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSH-----HHHHHHHHTSTTSSCBCHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccH-----HHHHhhhccCCcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999887 99999999999999987542211     11223333344455678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       236 s~~~~~~tG~~i  247 (255)
T 3icc_A          236 SPDSRWVTGQLI  247 (255)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CcccCCccCCEE
Confidence            999999999864

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=100.00  E-value=5.1e-42  Score=294.39  Aligned_cols=234  Identities=24%  Similarity=0.264  Sum_probs=197.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    +.++.++++|++|+++++++++++.+++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999999998887776665    2468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++|+||++||..+..+.++...|+++|++
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a  157 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETG-RLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAA  157 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccC-CHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcCCCCCCccHHHHHHH
Confidence            999999999998766555443 4578999999999999999999999998766999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC---CeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhcc
Q 042560          204 KIALYETLRVEFGG---DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       204 l~~~~~~la~e~~~---~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++++++.++.|+++   .|+||+|+||+++|++...... +.    ..++....   ..+..++.+|||+|+.+++|+++
T Consensus       158 ~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~----~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~  232 (253)
T 1hxh_A          158 VSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP-KG----VSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASD  232 (253)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC-TT----CCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc-hh----hhHHHHhhhhccCccCCCCCHHHHHHHHHHHcCc
Confidence            99999999999864   4999999999999998653211 00    01110111   12233455799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       233 ~~~~~tG~~~  242 (253)
T 1hxh_A          233 ESSVMSGSEL  242 (253)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCCCcEE
Confidence            9999999853

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=100.00  E-value=2.2e-41  Score=293.80  Aligned_cols=232  Identities=21%  Similarity=0.229  Sum_probs=192.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCH----HHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKV----EDCKHFVD  117 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~v~~~~~  117 (287)
                      .++++|+++||||++|||++++++|+++|++|++++| +.+++++..++++...+.++.++.+|++|.    ++++++++
T Consensus         7 ~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A            7 EASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             ----CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence            3468999999999999999999999999999999999 888888888877655234689999999999    99999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCC-----------CCcccchhehhhhHHHHHHHHHHHHhcCC------CEEE
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDI-----------TKPAPAMDINFWGSAYGTYFAIPYLKQTK------GKII  180 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~l~~~~------g~iv  180 (287)
                      ++.++++++|++|||||.....++.+ .+.           ++|++.+++|+.+++.++++++|.|.++.      |+||
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv  165 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLP-GDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVV  165 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC------------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccc-cCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEE
Confidence            99999999999999999876555444 344           67889999999999999999999887434      8999


Q ss_pred             EEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---h
Q 042560          181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---I  256 (287)
Q Consensus       181 ~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~  256 (287)
                      ++||..+..+.++...|++||+++++|++.++.|++++ |+||+|+||+++|+  ...          .++..+..   .
T Consensus       166 ~isS~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~--~~~----------~~~~~~~~~~~~  233 (276)
T 1mxh_A          166 NLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP--PAM----------PQETQEEYRRKV  233 (276)
T ss_dssp             EECCGGGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC--SSS----------CHHHHHHHHTTC
T ss_pred             EECchhhcCCCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC--ccC----------CHHHHHHHHhcC
Confidence            99999999999999999999999999999999999887 99999999999998  211          11222222   2


Q ss_pred             cCCC-CCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          257 SLLP-VQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       257 ~~~~-~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +..+ +.+|||+|+++++|++++++|+||+.+
T Consensus       234 p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~  265 (276)
T 1mxh_A          234 PLGQSEASAAQIADAIAFLVSKDAGYITGTTL  265 (276)
T ss_dssp             TTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CCCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence            3334 668999999999999999999999853

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=100.00  E-value=7.1e-42  Score=293.78  Aligned_cols=240  Identities=22%  Similarity=0.321  Sum_probs=196.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+  ++..+++...+ .++.++.+|++|+++++++++++.+++
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHG-VKAVHHPADLSDVAQIEALFALAEREF   77 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTS-CCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcC-CceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999999999999999999999876  44455555433 468889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+++|+
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~  156 (255)
T 2q2v_A           78 GGVDILVNNAGIQHVAPVEQF-PLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKH  156 (255)
T ss_dssp             SSCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHH
Confidence            999999999998766555443 4478999999999999999999999997765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh----hcCCCCCCHHHHHHHHHHhhcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ----ISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +++++++.++.|++++ |+||+|+||+++|++................+..+..    .+..++.+|||+|+++++|+++
T Consensus       157 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~  236 (255)
T 2q2v_A          157 GVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSE  236 (255)
T ss_dssp             HHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccccccccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCC
Confidence            9999999999999987 9999999999999986431100000000000001122    2333456899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       237 ~~~~~tG~~~  246 (255)
T 2q2v_A          237 AGSQVRGAAW  246 (255)
T ss_dssp             GGTTCCSCEE
T ss_pred             ccCCCCCCEE
Confidence            9999999853

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=100.00  E-value=7.1e-42  Score=295.02  Aligned_cols=239  Identities=23%  Similarity=0.299  Sum_probs=198.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.    .++.++++|++|.++++++++++.
T Consensus         6 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~d~~~v~~~~~~~~   81 (263)
T 3ak4_A            6 GIFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE----NGGFAVEVDVTKRASVDAAMQKAI   81 (263)
T ss_dssp             CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT----TCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCCeEEEEeCCCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999887776654432    157889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.+++  |+||++||..+..+.++...|+
T Consensus        82 ~~~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  160 (263)
T 3ak4_A           82 DALGGFDLLCANAGVSTMRPAVDI-TDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYS  160 (263)
T ss_dssp             HHHTCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHH
T ss_pred             HHcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHH
Confidence            999999999999998766555443 4478999999999999999999999997654  8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc----CcCCCccchHHHHhhh---hcCCCCCCHHHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL----NKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKA  270 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~  270 (287)
                      ++|++++++++.++.|+++. |+||+|+||+++|++......    ....   ..++..+..   .+..++.+|||+|++
T Consensus       161 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~dvA~~  237 (263)
T 3ak4_A          161 ASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGM---TPEAVRAEYVSLTPLGRIEEPEDVADV  237 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTS---CHHHHHHHHHHTCTTCSCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhcccccccccc---CcHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence            99999999999999999887 999999999999998643210    0000   001222222   233445689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++|++++++|+||+.+
T Consensus       238 v~~l~s~~~~~~tG~~~  254 (263)
T 3ak4_A          238 VVFLASDAARFMTGQGI  254 (263)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHhCccccCCCCCEE
Confidence            99999999999999853

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=100.00  E-value=3.1e-41  Score=288.58  Aligned_cols=235  Identities=26%  Similarity=0.315  Sum_probs=182.0

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ..+....+.++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.    .++.++.+|+++.+++++++
T Consensus         4 ~~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~   79 (249)
T 3f9i_A            4 HHHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIEVCNLANKEECSNLI   79 (249)
T ss_dssp             -----CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSHHHHHHHH
T ss_pred             CCccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCHHHHHHHH
Confidence            34566778899999999999999999999999999999999999998888776653    35888999999999988877


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~  195 (287)
                      ++    .+++|++|||||........+. +.++|++.+++|+.+++.+++.++|.|.++ .|+||++||..+..+.++..
T Consensus        80 ~~----~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  154 (249)
T 3f9i_A           80 SK----TSNLDILVCNAGITSDTLAIRM-KDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQA  154 (249)
T ss_dssp             HT----CSCCSEEEECCC--------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCSH
T ss_pred             Hh----cCCCCEEEECCCCCCCCccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCCc
Confidence            54    4789999999999876655554 448899999999999999999999998754 48999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|++||+|++++++.++.|++++ |+||+|+||+++|++......       ...+......+..++.+|||+|+++++|
T Consensus       155 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~dva~~~~~l  227 (249)
T 3f9i_A          155 NYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNE-------KQREAIVQKIPLGTYGIPEDVAYAVAFL  227 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCH-------HHHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCH-------HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999999887 999999999999998765310       0112222333445566799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++++||+.+
T Consensus       228 ~s~~~~~~tG~~~  240 (249)
T 3f9i_A          228 ASNNASYITGQTL  240 (249)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             cCCccCCccCcEE
Confidence            9999999999864

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=289.84  Aligned_cols=238  Identities=21%  Similarity=0.273  Sum_probs=189.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh-
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH-  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-  122 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|+++++++++++.++ 
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-SEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999999998888877776554 46889999999999999999999886 


Q ss_pred             cCCccEEEEcccc--C-----CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCC
Q 042560          123 FGRLDHLVTNAGV--V-----PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       123 ~~~idvli~nag~--~-----~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~  194 (287)
                      ++++|++|||||.  .     ...++.+ .+.++|++++++|+.+++.+++.++|.|.+++ |+||++||..+..+. +.
T Consensus        81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-~~  158 (260)
T 2qq5_A           81 QGRLDVLVNNAYAGVQTILNTRNKAFWE-TPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYM-FN  158 (260)
T ss_dssp             TTCCCEEEECCCTTHHHHHHTTTCCTTT-SCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCC-SS
T ss_pred             CCCceEEEECCccccccccccCCCcccc-CCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCC-CC
Confidence            8999999999953  2     1233333 34578999999999999999999999997654 899999999887654 46


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh-hhcCCCCCCHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV-QISLLPVQPTEECAKAIV  272 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~evA~~i~  272 (287)
                      ..|++||+++++|++.++.|++++ |+||+|+||+++|+|...........   .....+. ..+..+.++|||+|+.++
T Consensus       159 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~pe~va~~v~  235 (260)
T 2qq5_A          159 VPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVL---QDPVLKQFKSAFSSAETTELSGKCVV  235 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------CHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccccc---chhHHHHHHhhhccCCCHHHHHHHHH
Confidence            899999999999999999999887 99999999999999875432111000   0000110 011112247999999999


Q ss_pred             HhhccCC-ccccCCCC
Q 042560          273 NSACRGD-RYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~-~~itG~~~  287 (287)
                      ||+++++ +|+||+.+
T Consensus       236 ~l~s~~~~~~itG~~i  251 (260)
T 2qq5_A          236 ALATDPNILSLSGKVL  251 (260)
T ss_dssp             HHHTCTTGGGGTTCEE
T ss_pred             HHhcCcccccccceee
Confidence            9999987 59999864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=2.7e-41  Score=294.78  Aligned_cols=232  Identities=20%  Similarity=0.163  Sum_probs=193.7

Q ss_pred             CCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++|+++||||+  +|||++++++|+++|++|++++|+.+ .++..+++....+ .+.++.+|++|.++++++++++.+
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~   95 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLKKFLEE   95 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            3889999999999  99999999999999999999999875 3444444443322 367889999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +++++|++|||||....    .++.+ .+.++|++.+++|+.+++.++++++|.|.+++|+||++||..+..+.++...|
T Consensus        96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  174 (285)
T 2p91_A           96 NWGSLDIIVHSIAYAPKEEFKGGVID-TSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHYNVM  174 (285)
T ss_dssp             HTSCCCEEEECCCCCCGGGGSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTTTHH
T ss_pred             HcCCCCEEEECCCCCCcccCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCccHH
Confidence            99999999999998754    33333 34578999999999999999999999998667999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~  273 (287)
                      ++||++++++++.++.|++++ |+||+|+||+++|++.....        ..++..+   ...+..++.+|||+|+++++
T Consensus       175 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~dva~~~~~  246 (285)
T 2p91_A          175 GIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSIT--------GFHLLMEHTTKVNPFGKPITIEDVGDTAVF  246 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CT--------THHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhccc--------chHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999887 99999999999999865321        0122222   22334456789999999999


Q ss_pred             hhccCCccccCCC
Q 042560          274 SACRGDRYLTQPS  286 (287)
Q Consensus       274 l~~~~~~~itG~~  286 (287)
                      ++++.++++||+.
T Consensus       247 l~s~~~~~~tG~~  259 (285)
T 2p91_A          247 LCSDWARAITGEV  259 (285)
T ss_dssp             HTSGGGTTCCSCE
T ss_pred             HcCCcccCCCCCE
Confidence            9999999999985

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.5e-42  Score=293.92  Aligned_cols=223  Identities=24%  Similarity=0.301  Sum_probs=189.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++++|+++||||++|||+++|++|+++|++|++++|+.+..++          .++.++.+|++|+++++++++++.+
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~~~~   92 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD----------PDIHTVAGDISKPETADRIVREGIE   92 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS----------TTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------CceEEEEccCCCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999998664321          2588999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--CCCChhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--PPRMSFYN  198 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--~~~~~~Y~  198 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+  .++...|+
T Consensus        93 ~~g~iD~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~  171 (260)
T 3un1_A           93 RFGRIDSLVNNAGVFLAKPFVEM-TQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALAS  171 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHH
T ss_pred             HCCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHH
Confidence            99999999999999877665554 4588999999999999999999999997765 89999999887643  44568999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +||+|+++|++.++.|++++ |+||+|+||+++|++....          ..+......+..++++|||||+++++|  +
T Consensus       172 ~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----------~~~~~~~~~p~~r~~~~~dva~av~~L--~  239 (260)
T 3un1_A          172 LTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE----------THSTLAGLHPVGRMGEIRDVVDAVLYL--E  239 (260)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG----------GHHHHHTTSTTSSCBCHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH----------HHHHHhccCCCCCCcCHHHHHHHHHHh--c
Confidence            99999999999999999987 9999999999999986421          122233334555567899999999999  5


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      .++|+||+.+
T Consensus       240 ~~~~itG~~i  249 (260)
T 3un1_A          240 HAGFITGEIL  249 (260)
T ss_dssp             HCTTCCSCEE
T ss_pred             ccCCCCCcEE
Confidence            6789999853

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=100.00  E-value=1.2e-41  Score=293.84  Aligned_cols=234  Identities=22%  Similarity=0.335  Sum_probs=193.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.++            +.++.++.+|++|.++++++++++.
T Consensus         2 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------------~~~~~~~~~Dl~~~~~v~~~~~~~~   69 (264)
T 2dtx_A            2 GFSDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------------EAKYDHIECDVTNPDQVKASIDHIF   69 (264)
T ss_dssp             CCGGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------------SCSSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------------CCceEEEEecCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999998754            2358889999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|++
T Consensus        70 ~~~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~  148 (264)
T 2dtx_A           70 KEYGSISVLVNNAGIESYGKIESM-SMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVT  148 (264)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHH
Confidence            999999999999998776555543 4478999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCc-CCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNK-NGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      ||+++++|++.++.|+++.|+||+|+||+++|++........ .......++..+   ...+..++.+|||+|+++++|+
T Consensus       149 sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~  228 (264)
T 2dtx_A          149 SKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLA  228 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999986699999999999999864321000 000000001111   2223445668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       229 s~~~~~~tG~~i  240 (264)
T 2dtx_A          229 SREASFITGTCL  240 (264)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhcCCCCcEE
Confidence            999999999853

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=100.00  E-value=3e-41  Score=292.55  Aligned_cols=232  Identities=28%  Similarity=0.309  Sum_probs=189.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++|+++||||++|||+++|++|+++|++|+++ .|+.+..++..+++...+ .++.++.+|++|.++++++++++.++++
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            68999999999999999999999999999876 778888888877776654 4799999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc----CCCEEEEEcCCCCCCCCC-CChhhhh
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ----TKGKIIVVASAAGWLPPP-RMSFYNA  199 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~----~~g~iv~isS~~~~~~~~-~~~~Y~a  199 (287)
                      ++|++|||||...........+.+++++.+++|+.+++.+++.++|.|.+    ++|+||++||..+..+.+ +...|++
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~a  183 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAA  183 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHHHH
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchhHH
Confidence            99999999998765332333455889999999999999999999999976    358999999999987766 6788999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      ||+|+++|++.++.|++++ |+||+|+||+++|++.....         .++..+...   +..++++|||+|+++++++
T Consensus       184 sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~~edvA~~i~~l~  254 (272)
T 4e3z_A          184 SKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG---------LPDRAREMAPSVPMQRAGMPEEVADAILYLL  254 (272)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------CCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC---------ChHHHHHHhhcCCcCCCcCHHHHHHHHHHHh
Confidence            9999999999999999887 99999999999999865411         111122222   3334557999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       255 s~~~~~~tG~~i  266 (272)
T 4e3z_A          255 SPSASYVTGSIL  266 (272)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CCccccccCCEE
Confidence            999999999864

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=100.00  E-value=7.1e-41  Score=288.44  Aligned_cols=227  Identities=26%  Similarity=0.357  Sum_probs=195.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++..    ++.++.+|++|+++++++++++.++
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999887776665532    4788999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|+++ .|+||++||..+..+.++...|+++|
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  157 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDY-ALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATK  157 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHH
Confidence            9999999999998766555443 447899999999999999999999999764 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.. . . .       ++. . ..+..++.+|+|+|++++++++++++
T Consensus       158 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~-~-~-------~~~-~-~~~~~~~~~~~dvA~~v~~l~s~~~~  225 (260)
T 1nff_A          158 FAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-W-V-P-------EDI-F-QTALGRAAEPVEVSNLVVYLASDESS  225 (260)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-T-S-C-------TTC-S-CCSSSSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-c-c-h-------hhH-H-hCccCCCCCHHHHHHHHHHHhCcccc
Confidence            99999999999999877 99999999999999864 1 1 1       010 0 12233456899999999999999999


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      ++||+.
T Consensus       226 ~~~G~~  231 (260)
T 1nff_A          226 YSTGAE  231 (260)
T ss_dssp             TCCSCE
T ss_pred             CCcCCE
Confidence            999985

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=100.00  E-value=1.3e-41  Score=293.23  Aligned_cols=234  Identities=22%  Similarity=0.196  Sum_probs=195.0

Q ss_pred             CCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+++++|+++||||+  +|||++++++|+++|++|++++|+.+ .++..+++....+ .+.++.+|++|+++++++++++
T Consensus         3 ~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~   80 (261)
T 2wyu_A            3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG-GALLFRADVTQDEELDALFAGV   80 (261)
T ss_dssp             EECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHHHHH
Confidence            356789999999999  99999999999999999999999875 3334444433322 3788999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCCh
Q 042560          120 MEHFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~  195 (287)
                      .++++++|++|||||....    .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++..
T Consensus        81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~  158 (261)
T 2wyu_A           81 KEAFGGLDYLVHAIAFAPREAMEGRYID-TRRQDWLLALEVSAYSLVAVARRAEPLLRE-GGGIVTLTYYASEKVVPKYN  158 (261)
T ss_dssp             HHHHSSEEEEEECCCCCCHHHHSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEEECGGGTSBCTTCH
T ss_pred             HHHcCCCCEEEECCCCCCcccCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHhcc-CCEEEEEecccccCCCCCch
Confidence            9999999999999998753    33333 345789999999999999999999999865 58999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAI  271 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i  271 (287)
                      .|++||++++++++.++.|++++ |+||+|+||+++|++.....        ..++..+   ...+..++++|||+|+++
T Consensus       159 ~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~dva~~v  230 (261)
T 2wyu_A          159 VMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP--------GFTKMYDRVAQTAPLRRNITQEEVGNLG  230 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCT--------THHHHHHHHHHHSTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhcc--------ccHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence            99999999999999999999887 99999999999999864321        0122222   223444567899999999


Q ss_pred             HHhhccCCccccCCCC
Q 042560          272 VNSACRGDRYLTQPSW  287 (287)
Q Consensus       272 ~~l~~~~~~~itG~~~  287 (287)
                      ++|++++++++||+.+
T Consensus       231 ~~l~s~~~~~~tG~~~  246 (261)
T 2wyu_A          231 LFLLSPLASGITGEVV  246 (261)
T ss_dssp             HHHHSGGGTTCCSCEE
T ss_pred             HHHcChhhcCCCCCEE
Confidence            9999999999999853

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=100.00  E-value=3.6e-41  Score=288.61  Aligned_cols=229  Identities=24%  Similarity=0.284  Sum_probs=181.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+.         ...  .+..+.+|++|+++++++++++.++
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---------~~~--~~~~~~~D~~d~~~~~~~~~~~~~~   71 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ---------EQY--PFATEVMDVADAAQVAQVCQRLLAE   71 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS---------SCC--SSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh---------hcC--CceEEEcCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999998652         111  2778899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|+++|
T Consensus        72 ~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  150 (250)
T 2fwm_X           72 TERLDALVNAAGILRMGATDQL-SKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASK  150 (250)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHH
Confidence            9999999999998766555443 457899999999999999999999999764 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchH-HHHh---h---hhcCCCCCCHHHHHHHHHH
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQ-EIRD---V---QISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~-~~~~---~---~~~~~~~~~p~evA~~i~~  273 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.......+.    ..+ ...+   .   ..+..++.+|||+|+++++
T Consensus       151 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~  226 (250)
T 2fwm_X          151 AALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDD----AEEQRIRGFGEQFKLGIPLGKIARPQEIANTILF  226 (250)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChh----HHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHH
Confidence            99999999999999887 999999999999998654211110    000 1100   0   1233345689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      |++++++|+||+.+
T Consensus       227 l~s~~~~~~tG~~i  240 (250)
T 2fwm_X          227 LASDLASHITLQDI  240 (250)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HhCccccCCCCCEE
Confidence            99999999999853

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.2e-41  Score=293.54  Aligned_cols=234  Identities=28%  Similarity=0.329  Sum_probs=186.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ...+|+ |+++||||++|||++++++|+++|++|++++|+.+++++..+++...  .++.++.+|++|+++++++++++.
T Consensus        16 ~~~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   92 (272)
T 2nwq_A           16 RGSHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLP   92 (272)
T ss_dssp             -----C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHTCC
T ss_pred             cCCCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            345566 99999999999999999999999999999999999888877776443  368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-C-EEEEEcCCCCCCCCCCChhh
Q 042560          121 EHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-G-KIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g-~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++++++|++|||||.... .++.+ .+.++|++.+++|+.+++.+++.++|.|++++ | +||++||..+..+.++...|
T Consensus        93 ~~~g~iD~lvnnAG~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y  171 (272)
T 2nwq_A           93 EEFATLRGLINNAGLALGTDPAQS-CDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVY  171 (272)
T ss_dssp             GGGSSCCEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHH
T ss_pred             HHhCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchH
Confidence            999999999999998754 44444 34578999999999999999999999997644 7 99999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+++++|++.++.|+++. |+||+|+||+++|++........       ++..+......+..+|||+|+.+++|++
T Consensus       172 ~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~-------~~~~~~~~~~~~~~~pedvA~~v~~l~s  244 (272)
T 2nwq_A          172 GGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGD-------QARYDKTYAGAHPIQPEDIAETIFWIMN  244 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------CCCCBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccc-------hHHHHHhhccCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999987 99999999999999865321110       1111111122234689999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      + .++++|+.
T Consensus       245 ~-~~~~~g~~  253 (272)
T 2nwq_A          245 Q-PAHLNINS  253 (272)
T ss_dssp             S-CTTEEEEE
T ss_pred             C-CccCccce
Confidence            7 47888864

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=100.00  E-value=3e-41  Score=293.06  Aligned_cols=231  Identities=19%  Similarity=0.150  Sum_probs=194.3

Q ss_pred             CCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++|+++||||+  +|||++++++|+++|++|++++|+.+ .++..+++....+ .+.++.+|++|+++++++++++.+
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHHH
Confidence            4689999999999  99999999999999999999999876 4444444544322 377899999999999999999999


Q ss_pred             hcCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +++++|++|||||....    .++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y  158 (275)
T 2pd4_A           81 DLGSLDFIVHSVAFAPKEALEGSLLE-TSKSAFNTAMEISVYSLIELTNTLKPLLNN-GASVLTLSYLGSTKYMAHYNVM  158 (275)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEECGGGTSBCTTCHHH
T ss_pred             HcCCCCEEEECCccCccccCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCEEEEEecchhcCCCCCchhh
Confidence            99999999999998754    33333 345789999999999999999999999975 5899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~  273 (287)
                      ++||+|++++++.++.|++++ |+||+|+||+++|++.....        ..++..+.   ..+..++++|||+|+.+++
T Consensus       159 ~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--------~~~~~~~~~~~~~p~~~~~~p~dva~~~~~  230 (275)
T 2pd4_A          159 GLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA--------DFRMILKWNEINAPLRKNVSLEEVGNAGMY  230 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST--------THHHHHHHHHHHSTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc--------ccHHHHHHHHhcCCcCCCCCHHHHHHHHHH
Confidence            999999999999999999887 99999999999999865321        11222222   2333456789999999999


Q ss_pred             hhccCCccccCCC
Q 042560          274 SACRGDRYLTQPS  286 (287)
Q Consensus       274 l~~~~~~~itG~~  286 (287)
                      +++++++++||+.
T Consensus       231 l~s~~~~~~tG~~  243 (275)
T 2pd4_A          231 LLSSLSSGVSGEV  243 (275)
T ss_dssp             HHSGGGTTCCSCE
T ss_pred             HhCccccCCCCCE
Confidence            9999999999985

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=100.00  E-value=1.1e-41  Score=294.90  Aligned_cols=237  Identities=19%  Similarity=0.209  Sum_probs=191.1

Q ss_pred             CCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        44 ~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ++++|+++||||  ++|||++++++|+++|++|++++|+.++ +++..+++    +.++.++++|++|+++++++++++.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL----PAKAPLLELDVQNEEHLASLAGRVT   79 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS----SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc----CCCceEEEccCCCHHHHHHHHHHHH
Confidence            578999999999  9999999999999999999999998765 34433322    2357889999999999999999999


Q ss_pred             HhcC---CccEEEEccccCC-----CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC
Q 042560          121 EHFG---RLDHLVTNAGVVP-----MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP  192 (287)
Q Consensus       121 ~~~~---~idvli~nag~~~-----~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~  192 (287)
                      ++++   ++|++|||||...     ..++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+ .+.+
T Consensus        80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~iss~~~-~~~~  156 (269)
T 2h7i_A           80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFD-APYADVSKGIHISAYSYASMAKALLPIMNP-GGSIVGMDFDPS-RAMP  156 (269)
T ss_dssp             HHHCTTCCEEEEEECCCCCCGGGSTTSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEECCCS-SCCT
T ss_pred             HHhCCCCCceEEEECCccCcccccccccccc-CCHHHHHHHHHHhhHHHHHHHHHHHHhhcc-CCeEEEEcCccc-cccC
Confidence            9999   9999999999875     233434 345789999999999999999999999975 489999999876 6788


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCcc--chHHHHh---hhhcCC-CCCCHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLE--VDQEIRD---VQISLL-PVQPTE  265 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~-~~~~p~  265 (287)
                      .+..|+++|+++++|++.++.|++++ |+||+|+||+++|++.............  ..++..+   ...+.. ++++||
T Consensus       157 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~  236 (269)
T 2h7i_A          157 AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDAT  236 (269)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHH
Confidence            89999999999999999999999887 9999999999999986532110000000  0011112   222333 466899


Q ss_pred             HHHHHHHHhhccCCccccCCCC
Q 042560          266 ECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       266 evA~~i~~l~~~~~~~itG~~~  287 (287)
                      |+|++++||+++.++|+||+.+
T Consensus       237 dvA~~v~~L~s~~~~~itG~~i  258 (269)
T 2h7i_A          237 PVAKTVCALLSDWLPATTGDII  258 (269)
T ss_dssp             HHHHHHHHHHSSSCTTCCSEEE
T ss_pred             HHHHHHHHHhCchhccCcceEE
Confidence            9999999999999999999853

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=100.00  E-value=3.3e-41  Score=291.17  Aligned_cols=232  Identities=13%  Similarity=0.124  Sum_probs=192.3

Q ss_pred             CCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++|+++||||+  +|||++++++|+++|++|++++|+. +.++..+++....+ ...++++|++|+++++++++++.++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG-SDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC-CcEEEEccCCCHHHHHHHHHHHHHH
Confidence            789999999999  9999999999999999999999987 34444444443322 2478899999999999999999999


Q ss_pred             cCCccEEEEccccCCC----CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPM----CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~----~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||||....    .++.+..+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~  163 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVMG  163 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEECGGGTSBCTTTTHHH
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCEEEEEcchhhccCCCCchHHH
Confidence            9999999999998653    222220244789999999999999999999999875 58999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l  274 (287)
                      ++|++++++++.++.|++++ |+||+|+||+++|++.....        ..++..+.   ..+..++.+|||+|++++++
T Consensus       164 ~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l  235 (265)
T 1qsg_A          164 LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK--------DFRKMLAHCEAVTPIRRTVTIEDVGNSAAFL  235 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST--------THHHHHHHHHHHSTTSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccc--------ccHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887 99999999999999865321        01222222   22334567899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++++||+.+
T Consensus       236 ~s~~~~~~tG~~~  248 (265)
T 1qsg_A          236 CSDLSAGISGEVV  248 (265)
T ss_dssp             TSGGGTTCCSCEE
T ss_pred             hCchhcCccCCEE
Confidence            9999999999853

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=100.00  E-value=7.8e-41  Score=286.27  Aligned_cols=226  Identities=22%  Similarity=0.315  Sum_probs=182.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.+++++..+++.    .++.++.+|++|+++++++++++.++++++|
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG----DNLYIAQLDVRNRAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC----TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999999988877766652    3588999999999999999999999999999


Q ss_pred             EEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||||... ..++.+ .+.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++||++++
T Consensus        77 ~lvnnAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  155 (248)
T 3asu_A           77 ILVNNAGLALGMEPAHK-ASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR  155 (248)
T ss_dssp             EEEECCCCCCCCSCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             EEEECCCcCCCCCchhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHHHHH
Confidence            9999999863 333433 3457899999999999999999999999654 489999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      +|++.++.|++++ |+||+|+||+++ |++....+...       ++..+.........+|||+|+.+++++++ .+++|
T Consensus       156 ~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~-------~~~~~~~~~~~~~~~p~dvA~~v~~l~s~-~~~~~  227 (248)
T 3asu_A          156 QFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-------DGKAEKTYQNTVALTPEDVSEAVWWVSTL-PAHVN  227 (248)
T ss_dssp             HHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------CCBCHHHHHHHHHHHHHS-CTTCC
T ss_pred             HHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCc-------hHHHHHHHhccCCCCHHHHHHHHHHHhcC-Cccce
Confidence            9999999999987 999999999999 99864321100       11111111122235899999999999997 47888


Q ss_pred             CCC
Q 042560          284 QPS  286 (287)
Q Consensus       284 G~~  286 (287)
                      |+.
T Consensus       228 g~~  230 (248)
T 3asu_A          228 INT  230 (248)
T ss_dssp             CCE
T ss_pred             eeE
Confidence            875

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=100.00  E-value=1.5e-40  Score=289.47  Aligned_cols=230  Identities=16%  Similarity=0.217  Sum_probs=194.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++.+|++|.++++++++++ 
T Consensus        24 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~-   98 (281)
T 3ppi_A           24 TIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL----GNRAEFVSTNVTSEDSVLAAIEAA-   98 (281)
T ss_dssp             CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHH-
T ss_pred             hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHH-
Confidence            456789999999999999999999999999999999999999988877776    246899999999999999999999 


Q ss_pred             HhcCCccEEEEc-cccCCCCCCC----CCCCCCCcccchhehhhhHHHHHHHHHHHHhc-------CCCEEEEEcCCCCC
Q 042560          121 EHFGRLDHLVTN-AGVVPMCLFE----DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-------TKGKIIVVASAAGW  188 (287)
Q Consensus       121 ~~~~~idvli~n-ag~~~~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-------~~g~iv~isS~~~~  188 (287)
                      ++++++|++||| +|........    ...+.++|++.+++|+.+++.+++.++|.|.+       .+|+||++||..+.
T Consensus        99 ~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  178 (281)
T 3ppi_A           99 NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGY  178 (281)
T ss_dssp             TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGT
T ss_pred             HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEeccccc
Confidence            888999999999 5555444332    12344568999999999999999999999865       34899999999999


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----CCCCC
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----LPVQP  263 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  263 (287)
                      .+.++...|++||+|+++|++.++.|++++ |+||+|+||+++|++.....          ++..+.....    .++.+
T Consensus       179 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~----------~~~~~~~~~~~~~~~~~~~  248 (281)
T 3ppi_A          179 EGQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVG----------EEALAKFAANIPFPKRLGT  248 (281)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTC----------HHHHHHHHHTCCSSSSCBC
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhccc----------HHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999887 99999999999999876431          2222222222    44568


Q ss_pred             HHHHHHHHHHhhccCCccccCCCC
Q 042560          264 TEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       264 p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      |||+|+++++|+++  +|+||+.+
T Consensus       249 pedvA~~v~~l~s~--~~~tG~~i  270 (281)
T 3ppi_A          249 PDEFADAAAFLLTN--GYINGEVM  270 (281)
T ss_dssp             HHHHHHHHHHHHHC--SSCCSCEE
T ss_pred             HHHHHHHHHHHHcC--CCcCCcEE
Confidence            99999999999985  79999853

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=100.00  E-value=2e-41  Score=289.68  Aligned_cols=228  Identities=21%  Similarity=0.268  Sum_probs=184.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ....++++|+++||||++|||++++++|+++|++|++++|+.+++++            +..+.+|++|+++++++++++
T Consensus         8 ~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~------------~~~~~~D~~~~~~~~~~~~~~   75 (247)
T 1uzm_A            8 GAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG------------LFGVEVDVTDSDAVDRAFTAV   75 (247)
T ss_dssp             -CCCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------------SEEEECCTTCHHHHHHHHHHH
T ss_pred             cccccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH------------hcCeeccCCCHHHHHHHHHHH
Confidence            34556889999999999999999999999999999999998764332            223789999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|+
T Consensus        76 ~~~~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  154 (247)
T 1uzm_A           76 EEHQGPVEVLVSNAGLSADAFLMRM-TEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYA  154 (247)
T ss_dssp             HHHHSSCSEEEEECSCCC-----CC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCCChhHH
Confidence            9999999999999998766555443 4578999999999999999999999997655 8999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|++++++++.++.|++++ |+||+|+||+++|++.....       ....+......+..++.+|||+|+.+++|+++
T Consensus       155 ~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-------~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~  227 (247)
T 1uzm_A          155 ASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALD-------ERIQQGALQFIPAKRVGTPAEVAGVVSFLASE  227 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSC-------HHHHHHHGGGCTTCSCBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcC-------HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999999887 99999999999999864310       00011111222334466899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       228 ~~~~~~G~~i  237 (247)
T 1uzm_A          228 DASYISGAVI  237 (247)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCcCCEE
Confidence            9999999853

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=100.00  E-value=4.6e-40  Score=289.25  Aligned_cols=237  Identities=24%  Similarity=0.351  Sum_probs=195.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++...+ .++.++.+|++|.++++++++++.+++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999999999999888887664 468999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +++|++|||||+....++.+. +.+++++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.++...|++||
T Consensus       107 g~id~lvnnAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  185 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQM-NHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAK  185 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCCcccC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHH
Confidence            999999999999877665554 458899999999999999999999998764  47999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc---cchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL---EVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|+++|++.++.|++++ |+||+|+||+++|++............   ..+...........+..+|||+|+.++.++..
T Consensus       186 aa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~  265 (301)
T 3tjr_A          186 YGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILA  265 (301)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHHHHC----------------------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCcEEEEEECCccccccccccccccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhc
Confidence            99999999999999887 999999999999998764211111000   00011111111223456899999999999987


Q ss_pred             CCccc
Q 042560          278 GDRYL  282 (287)
Q Consensus       278 ~~~~i  282 (287)
                      +..++
T Consensus       266 ~~~~i  270 (301)
T 3tjr_A          266 NRLYI  270 (301)
T ss_dssp             TCSEE
T ss_pred             CCeEE
Confidence            76554

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=9.2e-41  Score=282.50  Aligned_cols=217  Identities=22%  Similarity=0.250  Sum_probs=180.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||+++|++|+++|++|++++|+.+.+++..+++    +.++.++.+|++|.++++++++++.+.   .|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~---~d   74 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----SNNVGYRARDLASHQEVEQLFEQLDSI---PS   74 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----SSCCCEEECCTTCHHHHHHHHHSCSSC---CS
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----hhccCeEeecCCCHHHHHHHHHHHhhc---CC
Confidence            67999999999999999999999999999999999887766654    346888999999999999998876543   49


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      ++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|.+++++||++||..+..+.++...|++||+|+++|
T Consensus        75 ~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~  153 (230)
T 3guy_A           75 TVVHSAGSGYFGLLQEQ-DPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGL  153 (230)
T ss_dssp             EEEECCCCCCCSCGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcCCCCccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCCCchhHHHHHHHHHH
Confidence            99999998876666554 45889999999999999999999999988778999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc-cCCccccCC
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC-RGDRYLTQP  285 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~-~~~~~itG~  285 (287)
                      ++.++.|++++ |+||+|+||+++|++.+.....               .+..++.+|||+|+.++++++ ++++|+||+
T Consensus       154 ~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---------------~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~  218 (230)
T 3guy_A          154 IESVRLELKGKPMKIIAVYPGGMATEFWETSGKS---------------LDTSSFMSAEDAALMIHGALANIGNGYVSDI  218 (230)
T ss_dssp             HHHHHHHTTTSSCEEEEEEECCC-------------------------------CCCHHHHHHHHHHHCCEETTEEEEEE
T ss_pred             HHHHHHHHHhcCeEEEEEECCcccChHHHhcCCC---------------CCcccCCCHHHHHHHHHHHHhCcCCCCccce
Confidence            99999999987 9999999999999987642110               123456789999999999987 778999998


Q ss_pred             CC
Q 042560          286 SW  287 (287)
Q Consensus       286 ~~  287 (287)
                      .+
T Consensus       219 ~~  220 (230)
T 3guy_A          219 TV  220 (230)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=100.00  E-value=2.6e-40  Score=281.35  Aligned_cols=222  Identities=23%  Similarity=0.295  Sum_probs=188.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++||||++|||++++++|+++|++|++++|+.++.   .+++   +   +..+.+|++| ++++++++++.++++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~---~---~~~~~~D~~~-~~~~~~~~~~~~~~g~i   71 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL---G---AVPLPTDLEK-DDPKGLVKRALEALGGL   71 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH---T---CEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh---C---cEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999999999999998762   2232   1   6788999999 99999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCC--CCChhhhhhHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPP--PRMSFYNASKAA  203 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~--~~~~~Y~asKaa  203 (287)
                      |++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.  ++...|++||++
T Consensus        72 d~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a  150 (239)
T 2ekp_A           72 HVLVHAAAVNVRKPALEL-SYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTA  150 (239)
T ss_dssp             CEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHH
T ss_pred             CEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHH
Confidence            999999998766555543 457899999999999999999999999764 4899999999998887  889999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++++++.++.|++++ |+||+|+||+++|++......        .++..+...   +..++.+|||+|+.+++|+++++
T Consensus       151 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~  222 (239)
T 2ekp_A          151 LLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQ--------NPELYEPITARIPMGRWARPEEIARVAAVLCGDEA  222 (239)
T ss_dssp             HHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--------CHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcccc--------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchh
Confidence            999999999999887 999999999999998653210        122222222   33345689999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       223 ~~~tG~~~  230 (239)
T 2ekp_A          223 EYLTGQAV  230 (239)
T ss_dssp             TTCCSCEE
T ss_pred             cCCCCCEE
Confidence            99999853

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=100.00  E-value=1.1e-39  Score=280.41  Aligned_cols=236  Identities=23%  Similarity=0.275  Sum_probs=200.0

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.+++++|+++||||++|||++++++|+++|++|++++|+.+..++..++++..+ .++.++.+|++|.++++++++++
T Consensus         6 ~~~~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A            6 MEKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             TGGGCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999988887777776554 36899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCC--h
Q 042560          120 MEHFGRLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRM--S  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~--~  195 (287)
                      .++++++|++|||||... ..++.+ .+.+++++.+++|+.+++.+++.++|.|.++ .++||++||..+..+.++.  .
T Consensus        85 ~~~~~~id~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~  163 (260)
T 3awd_A           85 HEQEGRVDILVACAGICISEVKAED-MTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQA  163 (260)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCCTTT-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCCH
T ss_pred             HHHcCCCCEEEECCCCCCCCCCccc-CCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCCCcc
Confidence            999999999999999876 444333 3446788999999999999999999998764 5899999999998887777  8


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcC-CcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITG-GKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKA  270 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~  270 (287)
                      .|+++|++++.+++.++.|++++ |+|++|+||+++|++.. ...         .++..+...   +..++.+|+|+|++
T Consensus       164 ~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~dva~~  234 (260)
T 3awd_A          164 AYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME---------KPELYDAWIAGTPMGRVGQPDEVASV  234 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT---------CHHHHHHHHHTCTTSSCBCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC---------ChHHHHHHHhcCCcCCCCCHHHHHHH
Confidence            99999999999999999999877 99999999999999865 211         112222222   23345689999999


Q ss_pred             HHHhhccCCccccCCC
Q 042560          271 IVNSACRGDRYLTQPS  286 (287)
Q Consensus       271 i~~l~~~~~~~itG~~  286 (287)
                      ++++++++++++||+.
T Consensus       235 ~~~l~~~~~~~~~G~~  250 (260)
T 3awd_A          235 VQFLASDAASLMTGAI  250 (260)
T ss_dssp             HHHHHSGGGTTCCSCE
T ss_pred             HHHHhCchhccCCCcE
Confidence            9999999889999975

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=100.00  E-value=8e-40  Score=279.16  Aligned_cols=232  Identities=27%  Similarity=0.391  Sum_probs=180.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |++++|+++||||++|||++++++|+++|++|+++ .|+.+.+++..++++..+ .++.++.+|++|+++++++++++.+
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG-INVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTT-CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999998 677777777777766544 4688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  158 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKM-SEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAAS  158 (247)
T ss_dssp             HHSCCCEEEECC----------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------CHHHHHH
T ss_pred             hcCCCCEEEECCCCCCCCccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHH
Confidence            99999999999998765554443 4478999999999999999999999987644 899999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++.+++.++.|+++. |++|+++||+++|++....          .++..+..   .+..++.+|+|+|++++++++
T Consensus       159 K~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  228 (247)
T 2hq1_A          159 KAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVL----------PDKVKEMYLNNIPLKRFGTPEEVANVVGFLAS  228 (247)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----------CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhc----------chHHHHHHHhhCCCCCCCCHHHHHHHHHHHcC
Confidence            999999999999999877 9999999999999976432          11222222   233345689999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      +++++++|+.
T Consensus       229 ~~~~~~~G~~  238 (247)
T 2hq1_A          229 DDSNYITGQV  238 (247)
T ss_dssp             GGGTTCCSCE
T ss_pred             cccccccCcE
Confidence            9888999975

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=100.00  E-value=7.9e-40  Score=285.50  Aligned_cols=235  Identities=23%  Similarity=0.306  Sum_probs=198.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.++++++++++.
T Consensus        38 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~  116 (285)
T 2c07_A           38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-YESSGYAGDVSKKEEISEVINKIL  116 (285)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-CceeEEECCCCCHHHHHHHHHHHH
Confidence            4467789999999999999999999999999999999999988888877776544 368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|++
T Consensus       117 ~~~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~a  195 (285)
T 2c07_A          117 TEHKNVDILVNNAGITRDNLFLRM-KNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSS  195 (285)
T ss_dssp             HHCSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCchhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCCchHHH
Confidence            999999999999998866555443 4478899999999999999999999997644 89999999999888899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++++.+++.++.|+++. |+||+|+||+++|++....          .++..+..   .+..++.+|||+|+++++++
T Consensus       196 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~  265 (285)
T 2c07_A          196 SKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI----------SEQIKKNIISNIPAGRMGTPEEVANLACFLS  265 (285)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C----------CHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc----------CHHHHHHHHhhCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999876 9999999999999986532          12222222   22334568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       266 ~~~~~~~~G~~i  277 (285)
T 2c07_A          266 SDKSGYINGRVF  277 (285)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CCCcCCCCCCEE
Confidence            999999999853

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=100.00  E-value=7.2e-40  Score=281.80  Aligned_cols=235  Identities=30%  Similarity=0.446  Sum_probs=199.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++||||++|||++++++|+++|++|++++| +.+..++..+++...+ .++.++.+|++|+++++++++++.+
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999 8777777777776544 4688999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++++|++|||||.....++.+. +.+++++.+++|+.+++.++++++|.|.++  .|+||++||..+..+.++...|++
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~  160 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEM-SLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAA  160 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHH
Confidence            99999999999998765554443 447889999999999999999999999765  489999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++++.+++.++.++++. |+|++|+||+++|++......        .++..+...   +..++.+|||+|+++++++
T Consensus       161 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  232 (261)
T 1gee_A          161 SKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA--------DPEQRADVESMIPMGYIGEPEEIAAVAAWLA  232 (261)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH--------SHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc--------ChhHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999877 999999999999998653210        112222222   2234558999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       233 ~~~~~~~~G~~~  244 (261)
T 1gee_A          233 SSEASYVTGITL  244 (261)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CccccCCCCcEE
Confidence            998899999853

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=7.2e-41  Score=286.00  Aligned_cols=229  Identities=24%  Similarity=0.281  Sum_probs=187.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+.+++++.. ++     .++.++.+|++|+++++    ++.+++
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~-----~~~~~~~~D~~~~~~~~----~~~~~~   72 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY-----PGIQTRVLDVTKKKQID----QFANEV   72 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS-----TTEEEEECCTTCHHHHH----HHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc-----cCceEEEeeCCCHHHHH----HHHHHh
Confidence            578999999999999999999999999999999999987765543 22     15888999999999987    445567


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCC-CChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPP-RMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~-~~~~Y~asK  201 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.+ +...|+++|
T Consensus        73 ~~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK  151 (246)
T 2ag5_A           73 ERLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTK  151 (246)
T ss_dssp             SCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHH
T ss_pred             CCCCEEEECCccCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHH
Confidence            899999999998876655553 447899999999999999999999999764 48999999999988877 899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.........    ..++..+...   +..++.+|||+|+.+++|+++
T Consensus       152 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~  227 (246)
T 2ag5_A          152 AAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARG----NPEEARNDFLKRQKTGRFATAEEIAMLCVYLASD  227 (246)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSS----SHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhccc----CcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc
Confidence            99999999999999887 999999999999997643111000    0122222222   333455799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+||+.+
T Consensus       228 ~~~~~tG~~i  237 (246)
T 2ag5_A          228 ESAYVTGNPV  237 (246)
T ss_dssp             GGTTCCSCEE
T ss_pred             cccCCCCCEE
Confidence            9999999853

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=100.00  E-value=4.9e-40  Score=283.69  Aligned_cols=240  Identities=24%  Similarity=0.287  Sum_probs=181.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ .++.++.+|++|.++++++++++
T Consensus         7 ~~~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~   85 (266)
T 1xq1_A            7 SQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-FQVTGSVCDASLRPEREKLMQTV   85 (266)
T ss_dssp             CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999998888877776554 36889999999999999999999


Q ss_pred             HHhc-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .+.+ +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ ++||++||..+..+.++...|
T Consensus        86 ~~~~~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y  164 (266)
T 1xq1_A           86 SSMFGGKLDILINNLGAIRSKPTLDY-TAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIY  164 (266)
T ss_dssp             HHHHTTCCSEEEEECCC------CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHH
T ss_pred             HHHhCCCCcEEEECCCCCCCCChhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCCCchH
Confidence            9998 899999999998765555443 4478899999999999999999999997654 899999999999888899999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|++++.+++.++.+++++ |+|++|+||+++|++...... +.    ..+.. ....+..++.+|+|+|+.++++++
T Consensus       165 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~----~~~~~-~~~~~~~~~~~~~dva~~~~~l~~  238 (266)
T 1xq1_A          165 SATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD-DE----FKKVV-ISRKPLGRFGEPEEVSSLVAFLCM  238 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------CCGGGGHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcC-HH----HHHHH-HhcCCCCCCcCHHHHHHHHHHHcC
Confidence            999999999999999999876 999999999999998764321 00    00111 111222345689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++++||+.+
T Consensus       239 ~~~~~~~G~~~  249 (266)
T 1xq1_A          239 PAASYITGQTI  249 (266)
T ss_dssp             GGGTTCCSCEE
T ss_pred             ccccCccCcEE
Confidence            98999999853

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=100.00  E-value=8.2e-40  Score=279.57  Aligned_cols=233  Identities=27%  Similarity=0.383  Sum_probs=196.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....+.++.++.+|++|+++++++++++.+++++
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            36899999999999999999999999999999999988887776662222346889999999999999999999999999


Q ss_pred             ccEEEEccccCCCCC---CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          126 LDHLVTNAGVVPMCL---FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       126 idvli~nag~~~~~~---~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +|++|||||.....+   +.+ .+.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++|
T Consensus        81 id~li~~Ag~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  159 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHT-TPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSK  159 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcchhhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHH
Confidence            999999999875543   333 34477899999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++++.+++.++.|++++ |+|++|+||+++|++......        .++..+...   +..++.+|+|+|+.+++++++
T Consensus       160 ~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~  231 (250)
T 2cfc_A          160 GAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD--------QPELRDQVLARIPQKEIGTAAQVADAVMFLAGE  231 (250)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT--------SHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC--------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCc
Confidence            99999999999999876 999999999999998653110        112222222   233455899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++++||+.+
T Consensus       232 ~~~~~~G~~~  241 (250)
T 2cfc_A          232 DATYVNGAAL  241 (250)
T ss_dssp             TCTTCCSCEE
T ss_pred             hhhcccCCEE
Confidence            9999999853

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=100.00  E-value=2e-39  Score=287.38  Aligned_cols=241  Identities=21%  Similarity=0.315  Sum_probs=191.3

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+. .++.++.+|++|.++++++++++
T Consensus         2 ~m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   81 (319)
T 3ioy_A            2 SLKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEV   81 (319)
T ss_dssp             -CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999988888866542 36899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCCCCCCC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPPP  192 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~~~~~~  192 (287)
                      .++++++|++|||||+....++.+. +.+++++++++|+.+++.+++.++|.|.++       +|+||++||..+..+.+
T Consensus        82 ~~~~g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~  160 (319)
T 3ioy_A           82 EARFGPVSILCNNAGVNLFQPIEES-SYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAG  160 (319)
T ss_dssp             HHHTCCEEEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCS
T ss_pred             HHhCCCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCC
Confidence            9999999999999999877666554 457899999999999999999999998754       68999999999999999


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc----cchHHHHhhhhcCCCC-CCHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL----EVDQEIRDVQISLLPV-QPTEE  266 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~p~e  266 (287)
                      +...|++||+|+++|++.++.|+.+. |+|++|+||+|+|++............    .......+........ .+||+
T Consensus       161 ~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~  240 (319)
T 3ioy_A          161 SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDV  240 (319)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------CCGGGSSBCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHHHHHhhhcCCCHHH
Confidence            99999999999999999999999887 999999999999998764322111100    0001111111111111 47999


Q ss_pred             HHHHHHHhhccCCccc
Q 042560          267 CAKAIVNSACRGDRYL  282 (287)
Q Consensus       267 vA~~i~~l~~~~~~~i  282 (287)
                      +|+.++.++..+..++
T Consensus       241 vA~~~~~al~~~~~~i  256 (319)
T 3ioy_A          241 IGARVIEAMKANRLHI  256 (319)
T ss_dssp             HHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHcCCCEE
Confidence            9999999998776554

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=100.00  E-value=1.1e-39  Score=278.99  Aligned_cols=233  Identities=22%  Similarity=0.316  Sum_probs=197.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...  .++.++.+|++|+++++++++++.++
T Consensus         2 ~~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            2 NRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999998887776665332  35889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++  ++||++||..+..+.++...|+++
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  158 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEET-TTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNAS  158 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHH
Confidence            9999999999998766554443 4478899999999999999999999998755  799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHh
Q 042560          201 KAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       201 Kaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l  274 (287)
                      |++++.+++.++.|+.  +. |++++|+||+++|++.....         .+.......   +..++.+|+|+|+.++++
T Consensus       159 K~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l  229 (251)
T 1zk4_A          159 KGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP---------GAEEAMSQRTKTPMGHIGEPNDIAYICVYL  229 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST---------THHHHHTSTTTCTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC---------chhhhHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence            9999999999999986  66 99999999999999865421         111111122   223355899999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++++||+.+
T Consensus       230 ~~~~~~~~~G~~~  242 (251)
T 1zk4_A          230 ASNESKFATGSEF  242 (251)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             cCcccccccCcEE
Confidence            9998899999853

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=100.00  E-value=1.3e-39  Score=280.67  Aligned_cols=234  Identities=21%  Similarity=0.243  Sum_probs=191.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.|++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++    +.++.++.+|++|+++++++++++.
T Consensus         6 ~~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~   81 (265)
T 2o23_A            6 ACRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL----GNNCVFAPADVTSEKDVQTALALAK   81 (265)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999988877766655    2368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCC-----CCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFED-----YTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGW  188 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~~  188 (287)
                      ++++++|++|||||.....+..+     ..+.+++++.+++|+.+++.+++.++|.|+++       .|+||++||..+.
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~  161 (265)
T 2o23_A           82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF  161 (265)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred             HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhc
Confidence            99999999999999876544332     13446788999999999999999999999765       3899999999998


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-CCCCCHHH
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-LPVQPTEE  266 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~e  266 (287)
                      .+.++...|+++|++++++++.++.|+++. |+||+|+||+++|++...... .      ..+......+. .++.+|+|
T Consensus       162 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~d  234 (265)
T 2o23_A          162 EGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE-K------VCNFLASQVPFPSRLGDPAE  234 (265)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------------CHHHHTCSSSCSCBCHHH
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCH-H------HHHHHHHcCCCcCCCCCHHH
Confidence            888999999999999999999999999877 999999999999998754210 0      01111222233 45668999


Q ss_pred             HHHHHHHhhccCCccccCCCC
Q 042560          267 CAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       267 vA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|+.++++++  ++++||+.+
T Consensus       235 va~~~~~l~~--~~~~~G~~i  253 (265)
T 2o23_A          235 YAHLVQAIIE--NPFLNGEVI  253 (265)
T ss_dssp             HHHHHHHHHH--CTTCCSCEE
T ss_pred             HHHHHHHHhh--cCccCceEE
Confidence            9999999996  478999853

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=100.00  E-value=1.9e-40  Score=283.11  Aligned_cols=225  Identities=17%  Similarity=0.124  Sum_probs=186.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEE-e--CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLV-A--RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+++||||++|||++++++|+++|++|+++ +  |+.+++++..+++  .+        .|+.|.++++++++++.+++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--~~--------~~~~~~~~v~~~~~~~~~~~   70 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN--PG--------TIALAEQKPERLVDATLQHG   70 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--TT--------EEECCCCCGGGHHHHHGGGS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--CC--------CcccCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999 6  9988877766654  11        23347888899999999999


Q ss_pred             CCccEEEEccccCCC---CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          124 GRLDHLVTNAGVVPM---CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       124 ~~idvli~nag~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++|++|||||....   .++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++
T Consensus        71 g~iD~lv~~Ag~~~~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~a  149 (244)
T 1zmo_A           71 EAIDTIVSNDYIPRPMNRLPLEGT-SEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGP  149 (244)
T ss_dssp             SCEEEEEECCCCCTTGGGCCSTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHH
T ss_pred             CCCCEEEECCCcCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHH
Confidence            999999999998766   555443 4578999999999999999999999997654 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCc---CCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEIT---GGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +|+++++|++.++.|++++ |+||+|+||+++|++.   ..... +    ...++..+...+..++.+|||+|+.+++|+
T Consensus       150 sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-~----~~~~~~~~~~~p~~r~~~pe~vA~~v~~l~  224 (244)
T 1zmo_A          150 ARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWEN-N----PELRERVDRDVPLGRLGRPDEMGALITFLA  224 (244)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHH-C----HHHHHHHHHHCTTCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccc-h----HHHHHHHhcCCCCCCCcCHHHHHHHHHHHc
Confidence            9999999999999999887 9999999999999986   32110 0    000111111234445678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++|+||+.+
T Consensus       225 s~~~~~~tG~~i  236 (244)
T 1zmo_A          225 SRRAAPIVGQFF  236 (244)
T ss_dssp             TTTTGGGTTCEE
T ss_pred             CccccCccCCEE
Confidence            999999999863

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=100.00  E-value=1.5e-41  Score=302.31  Aligned_cols=240  Identities=15%  Similarity=0.097  Sum_probs=189.9

Q ss_pred             CCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhH---------HHHHHHHHHhc--CCCeeEEEeecCCCH--H
Q 042560           46 AGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQ---------LREVADQAELM--GSPFALAIPADVSKV--E  110 (287)
Q Consensus        46 ~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~---------~~~~~~~~~~~--~~~~~~~~~~D~~~~--~  110 (287)
                      ++|+++||||++  |||+++|++|+++|++|++++|+...         .+...+.....  ....+..+++|+++.  +
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            479999999986  99999999999999999988876521         11111111111  112478888999888  8


Q ss_pred             ------------------HHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHHHHHHHH
Q 042560          111 ------------------DCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIP  170 (287)
Q Consensus       111 ------------------~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  170 (287)
                                        +++++++++.++++++|++|||||+..  ..++.+ .+.++|++++++|+.+++.++++++|
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~p  159 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLN-TSRKGYLDALSKSSYSLISLCKYFVN  159 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                              999999999999999999999999753  344444 45588999999999999999999999


Q ss_pred             HHhcCCCEEEEEcCCCCCCCCCCCh-hhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCC----
Q 042560          171 YLKQTKGKIIVVASAAGWLPPPRMS-FYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNG----  243 (287)
Q Consensus       171 ~l~~~~g~iv~isS~~~~~~~~~~~-~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~----  243 (287)
                      .|+++ |+||++||..+..+.++.. .|++||+|+++|++.++.|+++ + |+||+|+||+++|+|.+........    
T Consensus       160 ~m~~~-g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~  238 (329)
T 3lt0_A          160 IMKPQ-SSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYENN  238 (329)
T ss_dssp             GEEEE-EEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHTCC---------
T ss_pred             HHhhC-CeEEEEeCccccCCCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechhHhhhhhhccccccc
Confidence            99875 8999999999999999986 9999999999999999999987 5 9999999999999998764321100    


Q ss_pred             -------------------Cc------------cch---HHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          244 -------------------KL------------EVD---QEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       244 -------------------~~------------~~~---~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                                         ..            ...   .+......+..++++|||||++++||++++++|+||+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~fL~s~~a~~itG~~i  316 (329)
T 3lt0_A          239 TNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTI  316 (329)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             ccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCcccCcCCHHHHHHHHHHHhCchhccccCcEE
Confidence                               00            001   112223345556678999999999999999999999864

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=100.00  E-value=3.4e-41  Score=287.68  Aligned_cols=228  Identities=20%  Similarity=0.240  Sum_probs=186.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++|+++||||++|||+++|++|++ .|++|++++|+.+..           ...+..+.+|++|+++++++++.+.  +
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~--~   68 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-----------AENLKFIKADLTKQQDITNVLDIIK--N   68 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-----------CTTEEEEECCTTCHHHHHHHHHHTT--T
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-----------cccceEEecCcCCHHHHHHHHHHHH--h
Confidence            4689999999999999999999999 788999999876521           1247889999999999999996554  6


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|+++ |+||++||..+..+.++...|++||+|
T Consensus        69 ~~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~~sS~~~~~~~~~~~~Y~asKaa  146 (244)
T 4e4y_A           69 VSFDGIFLNAGILIKGSIFDI-DIESIKKVLDLNVWSSIYFIKGLENNLKVG-ASIVFNGSDQCFIAKPNSFAYTLSKGA  146 (244)
T ss_dssp             CCEEEEEECCCCCCCBCTTTS-CHHHHHHHHHHHTHHHHHHHHHTGGGEEEE-EEEEEECCGGGTCCCTTBHHHHHHHHH
T ss_pred             CCCCEEEECCccCCCCCcccC-CHHHHHHHHHHccHHHHHHHHHHHHHhccC-cEEEEECCHHHccCCCCCchhHHHHHH
Confidence            899999999999877666554 558899999999999999999999998764 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC-ccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK-LEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +++|++.++.|++++ |+||+|+||+++|++........... ....++..+...   +..++.+|||+|+++++|++++
T Consensus       147 ~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~  226 (244)
T 4e4y_A          147 IAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDK  226 (244)
T ss_dssp             HHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhcCc
Confidence            999999999999887 99999999999999876432110000 000112223333   3344568999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+||+.+
T Consensus       227 ~~~itG~~i  235 (244)
T 4e4y_A          227 SKFMTGGLI  235 (244)
T ss_dssp             GTTCCSCEE
T ss_pred             cccccCCeE
Confidence            999999864

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=100.00  E-value=1.4e-39  Score=278.70  Aligned_cols=233  Identities=23%  Similarity=0.252  Sum_probs=196.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCee-EEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA-LAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.    .++ .++.+|++|.++++++++++
T Consensus         5 ~~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            5 TVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG----AAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----ccceeEEEEecCCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999988877766652    246 88999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCC--hh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRM--SF  196 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~--~~  196 (287)
                      .+ ++++|++|||||.....+..+. +.+++++.+++|+.+++.+++.++|.|+++ .|+||++||..+..+.++.  ..
T Consensus        81 ~~-~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~  158 (254)
T 2wsb_A           81 EA-VAPVSILVNSAGIARLHDALET-DDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASS  158 (254)
T ss_dssp             HH-HSCCCEEEECCCCCCCBCSTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCBHH
T ss_pred             Hh-hCCCcEEEECCccCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCCcchH
Confidence            88 8999999999998766555443 447789999999999999999999998765 4899999999998888877  89


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~  272 (287)
                      |+++|++++++++.++.+++++ |++++|+||+++|++.+....        .++..+..   .+..++.+|||+|+.++
T Consensus       159 Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~dva~~~~  230 (254)
T 2wsb_A          159 YMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE--------RPELFETWLDMTPMGRCGEPSEIAAAAL  230 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT--------CHHHHHHHHHTSTTSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc--------ChHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999876 999999999999998653211        11222222   23334568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ++++++++++||+.+
T Consensus       231 ~l~~~~~~~~~G~~~  245 (254)
T 2wsb_A          231 FLASPAASYVTGAIL  245 (254)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCcccccccCCEE
Confidence            999998899999853

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=100.00  E-value=6.8e-40  Score=282.30  Aligned_cols=240  Identities=21%  Similarity=0.243  Sum_probs=196.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||++++++|+++|++|++++|+.++.++..+++....+.++.++.+|++|.++++++++++
T Consensus         7 ~~~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   86 (265)
T 1h5q_A            7 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQI   86 (265)
T ss_dssp             CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999997766655555554332346889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCC----
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPR----  193 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~----  193 (287)
                      .++++++|++|||||.....++.+. +.+++++.+++|+.+++.++++++|.|.++  +|+||++||..+..+.+.    
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~  165 (265)
T 1h5q_A           87 DADLGPISGLIANAGVSVVKPATEL-THEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNG  165 (265)
T ss_dssp             HHHSCSEEEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTE
T ss_pred             HHhcCCCCEEEECCCcCCCCchhhC-CHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccccc
Confidence            9999999999999998766555443 447889999999999999999999998654  389999999988766542    


Q ss_pred             ---ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          194 ---MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       194 ---~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                         ...|+++|++++++++.++.|+++. |+|++|+||+++|++.....       ....+......+..++.+|||+|+
T Consensus       166 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dva~  238 (265)
T 1h5q_A          166 SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMD-------KKIRDHQASNIPLNRFAQPEEMTG  238 (265)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC-------HHHHHHHHHTCTTSSCBCGGGGHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccc-------hhHHHHHHhcCcccCCCCHHHHHH
Confidence               7889999999999999999999877 99999999999999865421       001111122223334568999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      +++++++++++++||+.+
T Consensus       239 ~~~~l~~~~~~~~~G~~~  256 (265)
T 1h5q_A          239 QAILLLSDHATYMTGGEY  256 (265)
T ss_dssp             HHHHHHSGGGTTCCSCEE
T ss_pred             HHHhhccCchhcCcCcEE
Confidence            999999999999999853

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=100.00  E-value=3e-39  Score=276.71  Aligned_cols=234  Identities=23%  Similarity=0.334  Sum_probs=200.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..++++..+ .++.++.+|++|+++++++++++.
T Consensus         5 ~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~   83 (255)
T 1fmc_A            5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHH
Confidence            3566899999999999999999999999999999999999988888777776554 368899999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++|||||.....++ + .+.+++++.+++|+.+++.+++.++|.|++++ ++||++||..+..+.++...|++
T Consensus        84 ~~~~~~d~vi~~Ag~~~~~~~-~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~  161 (255)
T 1fmc_A           84 SKLGKVDILVNNAGGGGPKPF-D-MPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYAS  161 (255)
T ss_dssp             HHHSSCCEEEECCCCCCCCCT-T-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHH
T ss_pred             HhcCCCCEEEECCCCCCCCCC-C-CCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCCcccHH
Confidence            999999999999998765544 3 34477899999999999999999999997644 89999999999988899999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++++.+++.++.++++. |++++++||++.|++.....         .++..+...   +...+++|+|+|+++++++
T Consensus       162 sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~  232 (255)
T 1fmc_A          162 SKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI---------TPEIEQKMLQHTPIRRLGQPQDIANAALFLC  232 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---------CHHHHHHHHHTCSSCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhcc---------ChHHHHHHHhcCCcccCCCHHHHHHHHHHHh
Confidence            9999999999999999877 99999999999999765321         122222222   3334568999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++++++++|+.
T Consensus       233 ~~~~~~~~G~~  243 (255)
T 1fmc_A          233 SPAASWVSGQI  243 (255)
T ss_dssp             SGGGTTCCSCE
T ss_pred             CCccccCCCcE
Confidence            99888999975

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=100.00  E-value=1.3e-39  Score=277.89  Aligned_cols=236  Identities=22%  Similarity=0.288  Sum_probs=198.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....+.++.++.+|++|.++++++++++.++
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999988887777665422346889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|+++|
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  161 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRM-SLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTK  161 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCccccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCCCCchHHHHH
Confidence            9999999999998765544443 4477899999999999999999999987654 8999999998888888899999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+++.++.|+++. |++++++||+++|++.....       ....+......+..++.+|+|+|+++++++++.++
T Consensus       162 ~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~  234 (248)
T 2pnf_A          162 AGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLS-------EEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELAS  234 (248)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSC-------HHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhcc-------HHHHHHHHhcCCCCCccCHHHHHHHHHHHhCchhh
Confidence            99999999999999876 99999999999999865310       00111111222334456899999999999998888


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      +++|+.
T Consensus       235 ~~~G~~  240 (248)
T 2pnf_A          235 YITGEV  240 (248)
T ss_dssp             TCCSCE
T ss_pred             cCCCcE
Confidence            999975

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=279.33  Aligned_cols=237  Identities=24%  Similarity=0.254  Sum_probs=193.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC------CCeeEEEeecCCCHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG------SPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+      ..++.++.+|++|.+++++++
T Consensus         3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~   82 (264)
T 2pd6_A            3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL   82 (264)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence            45789999999999999999999999999999999999988877766554332      135889999999999999999


Q ss_pred             HHHHHhcCCc-cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCC
Q 042560          117 DVTMEHFGRL-DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPR  193 (287)
Q Consensus       117 ~~~~~~~~~i-dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~  193 (287)
                      +++.++++++ |++|||||.....++.+. +.+++++.+++|+.+++.++++++|.|.++  .|+||++||..+..+.++
T Consensus        83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~  161 (264)
T 2pd6_A           83 EQVQACFSRPPSVVVSCAGITQDEFLLHM-SEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVG  161 (264)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTT
T ss_pred             HHHHHHhCCCCeEEEECCCcCCCcchhhC-CHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCC
Confidence            9999999999 999999998766554443 447899999999999999999999998764  479999999999889899


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      ...|+++|++++++++.++.++++. |++++|+||+++|++.......      ..+. .....+...+.+|+|+|+.++
T Consensus       162 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~------~~~~-~~~~~~~~~~~~~~dva~~~~  234 (264)
T 2pd6_A          162 QTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQK------VVDK-ITEMIPMGHLGDPEDVADVVA  234 (264)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------------C-TGGGCTTCSCBCHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHH------HHHH-HHHhCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999877 9999999999999986532100      0001 111122334568999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      +++++++++++|+.+
T Consensus       235 ~l~~~~~~~~~G~~~  249 (264)
T 2pd6_A          235 FLASEDSGYITGTSV  249 (264)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHcCCcccCCCCCEE
Confidence            999998889999853

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=100.00  E-value=1.1e-39  Score=301.38  Aligned_cols=233  Identities=25%  Similarity=0.302  Sum_probs=191.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..+++|+++||||++|||+++|++|+++|++|++++|+... ++..+.....   .+.++.+|++|.++++++++++.++
T Consensus       209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~---~~~~~~~Dvtd~~~v~~~~~~~~~~  284 (454)
T 3u0b_A          209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV---GGTALTLDVTADDAVDKITAHVTEH  284 (454)
T ss_dssp             STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH---TCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc---CCeEEEEecCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999997532 2222222222   2568899999999999999999999


Q ss_pred             cCC-ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGR-LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~-idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++ +|++|||||+.....+.+. +.++|++++++|+.+++++.+++.|.|.+++ |+||++||..+..+.+++..|+++
T Consensus       285 ~g~~id~lV~nAGv~~~~~~~~~-~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~~~Yaas  363 (454)
T 3u0b_A          285 HGGKVDILVNNAGITRDKLLANM-DEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATT  363 (454)
T ss_dssp             STTCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHH
T ss_pred             cCCCceEEEECCcccCCCccccC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHH
Confidence            986 9999999999877666554 4588999999999999999999999887644 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |+++++|++.++.|++++ |+||+|+||+++|+|......       ...+..+...+..+.++|+|+|+.++||+++.+
T Consensus       364 Kaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~~l~r~g~pedvA~~v~fL~s~~a  436 (454)
T 3u0b_A          364 KAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPL-------ATREVGRRLNSLFQGGQPVDVAELIAYFASPAS  436 (454)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-----------------CHHHHHSBTTSSCBCHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcch-------hhHHHHHhhccccCCCCHHHHHHHHHHHhCCcc
Confidence            999999999999999887 999999999999999764321       112333444455566789999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       437 ~~itG~~i  444 (454)
T 3u0b_A          437 NAVTGNTI  444 (454)
T ss_dssp             TTCCSCEE
T ss_pred             CCCCCcEE
Confidence            99999864

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=100.00  E-value=3e-39  Score=280.76  Aligned_cols=237  Identities=22%  Similarity=0.280  Sum_probs=196.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.|++++|+++||||++|||++++++|+++|++|++++|+.+..++..+.+...+ .++.++.+|++|.++++++++++
T Consensus        27 ~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~  105 (279)
T 3ctm_A           27 LDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG-VHSKAYKCNISDPKSVEETISQQ  105 (279)
T ss_dssp             GGGGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHC-SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcceEEEeecCCHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999877776666665444 36889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC--CCCCh
Q 042560          120 MEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP--PPRMS  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~--~~~~~  195 (287)
                      .++++++|++|||||.... .++.+..+.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+  .++..
T Consensus       106 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~  185 (279)
T 3ctm_A          106 EKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQA  185 (279)
T ss_dssp             HHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---CCHH
T ss_pred             HHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCCCcc
Confidence            9999999999999998765 44431234477889999999999999999999997644 89999999999888  78889


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~  272 (287)
                      .|+++|++++++++.++.|++++.+||+|+||+++|++....          .++..+   ...+..++.+|+|+|+.++
T Consensus       186 ~Y~~sK~a~~~~~~~la~e~~~~~~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~~p~~~~~~~~dvA~~~~  255 (279)
T 3ctm_A          186 PYNTAKAACTHLAKSLAIEWAPFARVNTISPGYIDTDITDFA----------SKDMKAKWWQLTPLGREGLTQELVGGYL  255 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECSBSSTTTSSC----------CHHHHHHHHHHSTTCSCBCGGGTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhcccCCEEEEeccCCcccccccc----------ChHHHHHHHHhCCccCCcCHHHHHHHHH
Confidence            999999999999999999997534999999999999986421          112222   2223444668999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ++++++++++||+.+
T Consensus       256 ~l~s~~~~~~tG~~i  270 (279)
T 3ctm_A          256 YLASNASTFTTGSDV  270 (279)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCccccCccCCEE
Confidence            999999999999853

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=100.00  E-value=1.5e-38  Score=275.88  Aligned_cols=242  Identities=24%  Similarity=0.311  Sum_probs=197.2

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++...  .++.++.+|++|.++++++++++
T Consensus         9 ~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A            9 SSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--DVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCC--CceEEEECCCCCHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999988777666655321  25889999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCC-CCh
Q 042560          120 MEHFGRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPP-RMS  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~-~~~  195 (287)
                      .++++++|++|||||....  .++.+ .+.+++++.+++|+.+++.++++++|.|.++ .|+||++||..+..+.+ +..
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  165 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILE-AGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSH  165 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTT-CCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCH
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhh-CCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCCCCc
Confidence            9999999999999998643  23333 3447789999999999999999999999764 48999999999988877 788


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh-hcCCCCCCHHHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ-ISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~evA~~i~~  273 (287)
                      .|+++|++++++++.++.|+++. |++++|+||+++|++........   ....+...... ....++.+|+|+|+++++
T Consensus       166 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~dva~~~~~  242 (278)
T 2bgk_A          166 VYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVD---SSRVEELAHQAANLKGTLLRAEDVADAVAY  242 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCC---HHHHHHHHHHTCSSCSCCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccc---hhHHHHhhhcccccccccCCHHHHHHHHHH
Confidence            99999999999999999999877 99999999999999876432110   00011111111 122346689999999999


Q ss_pred             hhccCCccccCCCC
Q 042560          274 SACRGDRYLTQPSW  287 (287)
Q Consensus       274 l~~~~~~~itG~~~  287 (287)
                      +++++++++||+.+
T Consensus       243 l~~~~~~~~~G~~~  256 (278)
T 2bgk_A          243 LAGDESKYVSGLNL  256 (278)
T ss_dssp             HHSGGGTTCCSCEE
T ss_pred             HcCcccccCCCCEE
Confidence            99998899999853

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=100.00  E-value=1.1e-38  Score=271.84  Aligned_cols=223  Identities=26%  Similarity=0.344  Sum_probs=195.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-------RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ++|+++||||++|||++++++|+++|+       +|++++|+.+++++..+++...+ .++.++.+|++|++++++++++
T Consensus         1 ~~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            1 MKHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-ALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-CEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC-CeeeEEEecCCCHHHHHHHHHH
Confidence            368999999999999999999999999       99999999988888777776543 4789999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|+++ .|+||++||..+..+.++...|
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y  158 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDL-TEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIY  158 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHH
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCCCchh
Confidence            99999999999999998766555443 447899999999999999999999999754 4899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|++++++++.++.++++. |+|++|+||+++|++......         +.       ..++.+|||+|+.++++++
T Consensus       159 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---------~~-------~~~~~~~~dva~~~~~l~~  222 (244)
T 2bd0_A          159 CMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD---------EM-------QALMMMPEDIAAPVVQAYL  222 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS---------TT-------GGGSBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc---------cc-------cccCCCHHHHHHHHHHHHh
Confidence            999999999999999999887 999999999999998764210         00       1146789999999999999


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      +++++++|+.
T Consensus       223 ~~~~~~~g~~  232 (244)
T 2bd0_A          223 QPSRTVVEEI  232 (244)
T ss_dssp             SCTTEEEEEE
T ss_pred             CCccccchhe
Confidence            9999999864

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=100.00  E-value=7.6e-39  Score=281.16  Aligned_cols=241  Identities=18%  Similarity=0.150  Sum_probs=198.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++....+.++.++.+|++|.++++++++++
T Consensus        19 ~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   98 (302)
T 1w6u_A           19 LPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSEL   98 (302)
T ss_dssp             SCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHH
Confidence            35567899999999999999999999999999999999999998888877776542346899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh-c-CCCEEEEEcCCCCCCCCCCChhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK-Q-TKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~-~-~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|. + .+++||++||..+..+.++...|
T Consensus        99 ~~~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y  177 (302)
T 1w6u_A           99 IKVAGHPNIVINNAAGNFISPTERL-SPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPS  177 (302)
T ss_dssp             HHHTCSCSEEEECCCCCCCSCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHH
T ss_pred             HHHcCCCCEEEECCCCCCCCccccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchh
Confidence            9999999999999998765554443 4478899999999999999999999986 3 24899999999998888999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCC-CcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESE-ITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +++|++++++++.++.++++. |+|++|+||+++|+ +...... .    ....+......+..++.+|+|+|+++++++
T Consensus       178 ~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~----~~~~~~~~~~~p~~~~~~~~dva~~~~~l~  252 (302)
T 1w6u_A          178 ASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDP-T----GTFEKEMIGRIPCGRLGTVEELANLAAFLC  252 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCT-T----SHHHHHHHTTCTTSSCBCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhccc-c----hhhHHHHHhcCCcCCCCCHHHHHHHHHHHc
Confidence            999999999999999999877 99999999999998 4332110 0    001011112223334568999999999999


Q ss_pred             ccCCccccCCC
Q 042560          276 CRGDRYLTQPS  286 (287)
Q Consensus       276 ~~~~~~itG~~  286 (287)
                      ++++++++|+.
T Consensus       253 ~~~~~~~~G~~  263 (302)
T 1w6u_A          253 SDYASWINGAV  263 (302)
T ss_dssp             SGGGTTCCSCE
T ss_pred             CCcccccCCCE
Confidence            99889999975

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=100.00  E-value=8e-40  Score=275.54  Aligned_cols=209  Identities=23%  Similarity=0.348  Sum_probs=176.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||+++|++|+++|++|++++|+.+                     +|++|+++++++++++   
T Consensus         2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------------------~D~~~~~~v~~~~~~~---   57 (223)
T 3uce_A            2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------------------LDISDEKSVYHYFETI---   57 (223)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------------------CCTTCHHHHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------------------cCCCCHHHHHHHHHHh---
Confidence            5678999999999999999999999999999999999765                     7999999999988754   


Q ss_pred             cCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       +++|++|||||.. ...++.+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+++|
T Consensus        58 -g~id~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~~~~~~Y~asK  134 (223)
T 3uce_A           58 -GAFDHLIVTAGSYAPAGKVVD-VEVTQAKYAFDTKFWGAVLAAKHGARYLKQ-GGSITLTSGMLSRKVVANTYVKAAIN  134 (223)
T ss_dssp             -CSEEEEEECCCCCCCCSCTTT-SCHHHHHHHHHHHHHHHHHHHHHHGGGEEE-EEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             -CCCCEEEECCCCCCCCCCccc-CCHHHHHhhheeeeeeHHHHHHHHHhhccC-CeEEEEecchhhccCCCCchHHHHHH
Confidence             8999999999987 3444444 455889999999999999999999999976 68999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++++++.++.|+++ |+||+|+||+++|++.......      ..++..+   ...+..++.+|||+|++++++++  
T Consensus       135 ~a~~~~~~~la~e~~~-i~vn~v~PG~v~t~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~--  205 (223)
T 3uce_A          135 AAIEATTKVLAKELAP-IRVNAISPGLTKTEAYKGMNAD------DRDAMYQRTQSHLPVGKVGEASDIAMAYLFAIQ--  205 (223)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEECSBCSGGGTTSCHH------HHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhcC-cEEEEEEeCCCcchhhhhcchh------hHHHHHHHHhhcCCCCCccCHHHHHHHHHHHcc--
Confidence            9999999999999988 9999999999999987653211      1122222   23344555689999999999998  


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++++||+.+
T Consensus       206 ~~~~tG~~i  214 (223)
T 3uce_A          206 NSYMTGTVI  214 (223)
T ss_dssp             CTTCCSCEE
T ss_pred             CCCCCCcEE
Confidence            489999864

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=100.00  E-value=8.4e-40  Score=311.70  Aligned_cols=224  Identities=25%  Similarity=0.322  Sum_probs=190.0

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---------hHHHHHHHHHHhcCCCeeEEEeecCCCHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE---------RQLREVADQAELMGSPFALAIPADVSKVED  111 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  111 (287)
                      +.+++++|+++||||++|||+++|++|+++|++|++++|+.         +.+++..+++...++ ++   .+|++|.++
T Consensus         2 ~~~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~-~~---~~d~~d~~~   77 (604)
T 2et6_A            2 SPVDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGG-VA---VADYNNVLD   77 (604)
T ss_dssp             CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTC-EE---EEECCCTTC
T ss_pred             CCCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCC-eE---EEEcCCHHH
Confidence            34678999999999999999999999999999999998765         567777777766543 32   368888888


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP  190 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~  190 (287)
                      ++++++++.+++|++|+||||||+....++.+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..+..+
T Consensus        78 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~  156 (604)
T 2et6_A           78 GDKIVETAVKNFGTVHVIINNAGILRDASMKKM-TEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG  156 (604)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC
Confidence            999999999999999999999999876666554 4588999999999999999999999997654 89999999999999


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      .+++..|++||+|+.+|+++++.|++++ ||||+|+|| ++|+|.....         .++..       ...+|||||+
T Consensus       157 ~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~---------~~~~~-------~~~~pe~vA~  219 (604)
T 2et6_A          157 NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIM---------PPPML-------EKLGPEKVAP  219 (604)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTS---------CHHHH-------TTCSHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccC---------Chhhh-------ccCCHHHHHH
Confidence            9999999999999999999999999988 999999998 6888754321         11111       1247999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      .++||++++ +|+||+.+
T Consensus       220 ~v~~L~s~~-~~itG~~~  236 (604)
T 2et6_A          220 LVLYLSSAE-NELTGQFF  236 (604)
T ss_dssp             HHHHHTSSS-CCCCSCEE
T ss_pred             HHHHHhCCc-ccCCCCEE
Confidence            999999998 99999853

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.4e-38  Score=276.62  Aligned_cols=235  Identities=24%  Similarity=0.288  Sum_probs=196.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++||||++|||++++++|+++|++|++++|+.+++++..++++..+ ..++.++.+|++|.++++++++++.+
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999998888887776654 24688899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC---CEEEEEcCCCCC--CCCCCChh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGW--LPPPRMSF  196 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~---g~iv~isS~~~~--~~~~~~~~  196 (287)
                      +++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++   |+||++||..+.  .+.++...
T Consensus       108 ~~g~iD~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~  186 (279)
T 1xg5_A          108 QHSGVDICINNAGLARPDTLLSG-STSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHF  186 (279)
T ss_dssp             HHCCCSEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHH
T ss_pred             hCCCCCEEEECCCCCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCch
Confidence            99999999999998766555443 4478999999999999999999999998754   899999999887  56777889


Q ss_pred             hhhhHHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      |+++|++++++++.++.|++  +. |+||+|+||+++|++.......       .++.........++.+|+|+|+.+++
T Consensus       187 Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~~~dvA~~i~~  259 (279)
T 1xg5_A          187 YSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDK-------DPEKAAATYEQMKCLKPEDVAEAVIY  259 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTT-------CHHHHHHHHC---CBCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhccc-------ChhHHhhhcccccCCCHHHHHHHHHH
Confidence            99999999999999999997  66 9999999999999985322111       11112222334456789999999999


Q ss_pred             hhccCCccccCC
Q 042560          274 SACRGDRYLTQP  285 (287)
Q Consensus       274 l~~~~~~~itG~  285 (287)
                      ++++++.+.+|+
T Consensus       260 l~~~~~~~~~g~  271 (279)
T 1xg5_A          260 VLSTPAHIQIGD  271 (279)
T ss_dssp             HHHSCTTEEEEE
T ss_pred             HhcCCcceEeee
Confidence            999988888775

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=100.00  E-value=6.3e-39  Score=273.11  Aligned_cols=229  Identities=28%  Similarity=0.388  Sum_probs=194.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ||+++||||++|||++++++|+++|++|++ .+|+.+..++..++++..+ .++.++.+|++|+++++++++++.+++++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG-GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT-CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999998 4888888877777766544 36889999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|.++ .|+||++||..+..+.++...|+++|+++
T Consensus        80 id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~  158 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRM-KKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCcCcccC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHH
Confidence            9999999998766554443 447789999999999999999999998754 48999999999988889999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh-ccCC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA-CRGD  279 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~-~~~~  279 (287)
                      +++++.++.++++. |+|++|+||+++|++.....          ++..+...   +..++.+|+|+|+++++++ ++.+
T Consensus       159 ~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----------~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~  228 (244)
T 1edo_A          159 IGFSKTAAREGASRNINVNVVCPGFIASDMTAKLG----------EDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAA  228 (244)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC----------HHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGG
T ss_pred             HHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcC----------hHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCCCcc
Confidence            99999999999877 99999999999999865321          12222222   2334558999999999999 6778


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       229 ~~~~G~~~  236 (244)
T 1edo_A          229 SYITGQAF  236 (244)
T ss_dssp             GGCCSCEE
T ss_pred             CCcCCCEE
Confidence            89999853

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=3.1e-38  Score=277.50  Aligned_cols=239  Identities=21%  Similarity=0.300  Sum_probs=198.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc----CCCeeEEEeecCCCHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM----GSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ...++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++...    .+.++.++.+|++|.+++++++
T Consensus        12 ~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~   91 (303)
T 1yxm_A           12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   91 (303)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence            445788999999999999999999999999999999999999888888877652    2346899999999999999999


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHH-HhcCCCEEEEEcCCCCCCCCCCCh
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-l~~~~g~iv~isS~~~~~~~~~~~  195 (287)
                      +++.++++++|++|||||.....+..+. +.+++++.+++|+.+++.++++++|. +++++|+||++||.. ..+.++..
T Consensus        92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~~~  169 (303)
T 1yxm_A           92 KSTLDTFGKINFLVNNGGGQFLSPAEHI-SSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAV  169 (303)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCH
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCcch
Confidence            9999999999999999997665544443 44778999999999999999999995 444468999999998 77888999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHH
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAI  271 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i  271 (287)
                      .|+++|++++++++.++.++.+. |+||+|+||+++|++.......      ..++..+...   +..++.+|||+|+++
T Consensus       170 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~------~~~~~~~~~~~~~p~~~~~~~~dvA~~i  243 (303)
T 1yxm_A          170 HSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS------WGQSFFEGSFQKIPAKRIGVPEEVSSVV  243 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG------GGGGGGTTGGGGSTTSSCBCTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccc------cchHHHHHHHhcCcccCCCCHHHHHHHH
Confidence            99999999999999999999876 9999999999999953211110      0111122222   233456899999999


Q ss_pred             HHhhccCCccccCCCC
Q 042560          272 VNSACRGDRYLTQPSW  287 (287)
Q Consensus       272 ~~l~~~~~~~itG~~~  287 (287)
                      ++++++.++++||+.+
T Consensus       244 ~~l~~~~~~~~~G~~~  259 (303)
T 1yxm_A          244 CFLLSPAASFITGQSV  259 (303)
T ss_dssp             HHHHSGGGTTCCSCEE
T ss_pred             HHHhCcccccCCCcEE
Confidence            9999998999999853

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=100.00  E-value=2.8e-39  Score=277.48  Aligned_cols=224  Identities=15%  Similarity=0.135  Sum_probs=184.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.+++++..+ ++..+. ++..+     |.++++++++++.++++++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~-~~~~~-----d~~~v~~~~~~~~~~~g~iD   74 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYP-QLKPM-----SEQEPAELIEAVTSAYGQVD   74 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCT-TSEEC-----CCCSHHHHHHHHHHHHSCCC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCC-cEEEE-----CHHHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999999999999999888776655 544432 34433     67888999999999999999


Q ss_pred             EEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||||.. ...++.+ .+.++|++.+++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++||++++
T Consensus        75 ~lv~nAg~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  153 (254)
T 1zmt_A           75 VLVSNDIFAPEFQPIDK-YAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGAC  153 (254)
T ss_dssp             EEEEECCCCCCCCCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHH
T ss_pred             EEEECCCcCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHH
Confidence            999999987 5454444 3457899999999999999999999999764 489999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcc---------cCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLI---------ESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v---------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      +|++.++.|++++ |+||+|+||++         +|++....        ....+......+..++++|||+|+.+++|+
T Consensus       154 ~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~--------~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~  225 (254)
T 1zmt_A          154 TLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN--------PEHVAHVKKVTALQRLGTQKELGELVAFLA  225 (254)
T ss_dssp             HHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC--------HHHHHHHHHHSSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccC--------hHHHHHHhccCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999887 99999999999         66553310        000111122223445668999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      +++++++||+.+
T Consensus       226 s~~~~~~tG~~~  237 (254)
T 1zmt_A          226 SGSCDYLTGQVF  237 (254)
T ss_dssp             TTSCGGGTTCEE
T ss_pred             CcccCCccCCEE
Confidence            999999999853

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=100.00  E-value=2.2e-38  Score=268.32  Aligned_cols=219  Identities=29%  Similarity=0.353  Sum_probs=181.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.     ++..+.+|++|.++++++++++.+.+
T Consensus         2 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (234)
T 2ehd_A            2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE-----GALPLPGDVREEGDWARAVAAMEEAF   76 (234)
T ss_dssp             --CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----hceEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467899999999999999999999999999999999888776655431     47889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|+++|+
T Consensus        77 ~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~  155 (234)
T 2ehd_A           77 GELSALVNNAGVGVMKPVHEL-TLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKF  155 (234)
T ss_dssp             SCCCEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCCcccC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHH
Confidence            999999999998766555443 4478999999999999999999999998754 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++++.++.|+++. |++++|+||+++|++....          .++ .    .   ..+|+|+|+.+++++++++++
T Consensus       156 a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~-~----~---~~~~~dvA~~~~~l~~~~~~~  217 (234)
T 2ehd_A          156 GLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT----------PGQ-A----W---KLKPEDVAQAVLFALEMPGHA  217 (234)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------CCHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc----------ccc-c----C---CCCHHHHHHHHHHHhCCCccc
Confidence            9999999999999877 9999999999999986531          001 0    0   358999999999999999999


Q ss_pred             ccCCC
Q 042560          282 LTQPS  286 (287)
Q Consensus       282 itG~~  286 (287)
                      ++|+.
T Consensus       218 ~~g~~  222 (234)
T 2ehd_A          218 MVSEI  222 (234)
T ss_dssp             CCCEE
T ss_pred             ccceE
Confidence            99863

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=100.00  E-value=8.6e-40  Score=289.24  Aligned_cols=244  Identities=17%  Similarity=0.111  Sum_probs=184.6

Q ss_pred             cCCCCCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhH------HH-HHHHHHHhcC-CC---eeEEEeec-
Q 042560           40 INAEDVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQ------LR-EVADQAELMG-SP---FALAIPAD-  105 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~------~~-~~~~~~~~~~-~~---~~~~~~~D-  105 (287)
                      |..|++++|+++||||  ++|||+++|++|+++|++|++++|+...      .+ +..++.+... +.   .+..+.+| 
T Consensus         2 M~~~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (315)
T 2o2s_A            2 AFPIDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDA   81 (315)
T ss_dssp             --CCCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCT
T ss_pred             CCcccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccc
Confidence            4557789999999999  8999999999999999999999986421      00 0111111111 11   02333333 


Q ss_pred             -----------CC--------CHHHHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHH
Q 042560          106 -----------VS--------KVEDCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYG  164 (287)
Q Consensus       106 -----------~~--------~~~~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l  164 (287)
                                 ++        |+++++++++++.+++|++|++|||||...  ..++.+ .+.++|++.+++|+.+++.+
T Consensus        82 ~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l  160 (315)
T 2o2s_A           82 AFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLE-TSRKGYLAASSNSAYSFVSL  160 (315)
T ss_dssp             TCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGG-CCHHHHHHHHHHHTHHHHHH
T ss_pred             cccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCccc-CCHHHHHHHHhhhhHHHHHH
Confidence                       33        366899999999999999999999999764  333444 34578999999999999999


Q ss_pred             HHHHHHHHhcCCCEEEEEcCCCCCCCCCCC-hhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCc
Q 042560          165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRM-SFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNK  241 (287)
Q Consensus       165 ~~~~~~~l~~~~g~iv~isS~~~~~~~~~~-~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~  241 (287)
                      +++++|.|++ +|+||++||..+..+.+++ ..|++||+|+++|++.++.|+++ + |+||+|+||+++|++........
T Consensus       161 ~~~~~~~m~~-~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~  239 (315)
T 2o2s_A          161 LQHFGPIMNE-GGSAVTLSYLAAERVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSG  239 (315)
T ss_dssp             HHHHSTTEEE-EEEEEEEEEGGGTSCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTCSS
T ss_pred             HHHHHHHHhc-CCEEEEEecccccccCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhhhccccc
Confidence            9999999976 4899999999999888887 58999999999999999999974 5 99999999999999865321111


Q ss_pred             CCCccchHHHH---hhhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          242 NGKLEVDQEIR---DVQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       242 ~~~~~~~~~~~---~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      . . ...++..   ....+..++++|||+|+.++||+++.++|+||+.+
T Consensus       240 ~-~-~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  286 (315)
T 2o2s_A          240 E-K-SFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTL  286 (315)
T ss_dssp             S-S-CHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             c-c-hhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCcCCEE
Confidence            0 0 0111221   22234556678999999999999999999999853

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=100.00  E-value=8.1e-40  Score=280.39  Aligned_cols=218  Identities=16%  Similarity=0.142  Sum_probs=184.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..+..+|+++||||++|||+++|++|+++|++|++++|+.++.+             ...+.+|++|.++++++++++.
T Consensus        16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~d~~d~~~v~~~~~~~~   82 (251)
T 3orf_A           16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA-------------DHSFTIKDSGEEEIKSVIEKIN   82 (251)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS-------------SEEEECSCSSHHHHHHHHHHHH
T ss_pred             ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------------ccceEEEeCCHHHHHHHHHHHH
Confidence            444556899999999999999999999999999999999876532             2357799999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++++|++|||||.....+.....+.+++++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+++
T Consensus        83 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~~s  161 (251)
T 3orf_A           83 SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ-GGLFVLTGASAALNRTSGMIAYGAT  161 (251)
T ss_dssp             TTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCGGGGSCCTTBHHHHHH
T ss_pred             HHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc-CCEEEEEechhhccCCCCCchhHHH
Confidence            999999999999998766553333445788999999999999999999999976 6899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |+|++++++.++.|++  +. |+||+|+||+++|++........               +..++.+|||+|+++++++++
T Consensus       162 Kaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~---------------~~~~~~~~~dva~~i~~l~~~  226 (251)
T 3orf_A          162 KAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYMSDA---------------NFDDWTPLSEVAEKLFEWSTN  226 (251)
T ss_dssp             HHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHCTTS---------------CGGGSBCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhcccc---------------cccccCCHHHHHHHHHHHhcC
Confidence            9999999999999986  66 99999999999999865432111               122356799999999999999


Q ss_pred             -CCccccCCCC
Q 042560          278 -GDRYLTQPSW  287 (287)
Q Consensus       278 -~~~~itG~~~  287 (287)
                       +++++||+.+
T Consensus       227 ~~~~~~tG~~i  237 (251)
T 3orf_A          227 SDSRPTNGSLV  237 (251)
T ss_dssp             GGGCCCTTCEE
T ss_pred             ccccCCcceEE
Confidence             8999999853

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=100.00  E-value=5.5e-40  Score=290.95  Aligned_cols=244  Identities=18%  Similarity=0.156  Sum_probs=156.9

Q ss_pred             cCCCCCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCCh-----------hHHH-----------HHHHHHHhcC
Q 042560           40 INAEDVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRE-----------RQLR-----------EVADQAELMG   95 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~-----------~~~~-----------~~~~~~~~~~   95 (287)
                      |..|++++|+++||||  ++|||+++|++|+++|++|++++|+.           ++++           +..++++..+
T Consensus         2 m~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 2ptg_A            2 PLPVDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKP   81 (319)
T ss_dssp             CCCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC-----------------------------
T ss_pred             CcccccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcc
Confidence            3456789999999999  89999999999999999999998753           1222           1222232221


Q ss_pred             CC--eeEEEeec------------CCC--------HHHHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcc
Q 042560           96 SP--FALAIPAD------------VSK--------VEDCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPA  151 (287)
Q Consensus        96 ~~--~~~~~~~D------------~~~--------~~~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~  151 (287)
                      ..  ....+.+|            ++|        +++++++++++.++++++|++|||||...  ..++.+ .+.++|+
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~-~~~~~~~  160 (319)
T 2ptg_A           82 VDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQ-TSRKGYL  160 (319)
T ss_dssp             ---CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGG-CCHHHHH
T ss_pred             ccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCcccc-CCHHHHH
Confidence            10  02333333            333        45899999999999999999999999763  333444 3557899


Q ss_pred             cchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC-hhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCc
Q 042560          152 PAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM-SFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGL  228 (287)
Q Consensus       152 ~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~-~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~  228 (287)
                      +.+++|+.+++.++++++|.|++ +|+||++||..+..+.+++ ..|++||+|+++|++.++.|+++ + |+||+|+||+
T Consensus       161 ~~~~vN~~g~~~l~~~~~~~m~~-~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~  239 (319)
T 2ptg_A          161 AAVSSSSYSFVSLLQHFLPLMKE-GGSALALSYIASEKVIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGP  239 (319)
T ss_dssp             HHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEEECC------------------THHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             HHHhHhhHHHHHHHHHHHHHHhc-CceEEEEeccccccccCccchhhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCC
Confidence            99999999999999999999976 4899999999999888887 69999999999999999999974 5 9999999999


Q ss_pred             ccCCCcCCcccCcCCCccchHHHHh---hhhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          229 IESEITGGKFLNKNGKLEVDQEIRD---VQISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       229 v~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ++|+|......... . ...++..+   ...+..++++|||+|+.++||+++.++|+||+.+
T Consensus       240 v~T~~~~~~~~~~~-~-~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i  299 (319)
T 2ptg_A          240 LKSRAASAIGKAGD-K-TFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATL  299 (319)
T ss_dssp             CC---------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccChhhhhcccccc-h-hhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEE
Confidence            99998764321100 0 00011111   1223345678999999999999999999999853

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=100.00  E-value=1.8e-38  Score=276.14  Aligned_cols=232  Identities=25%  Similarity=0.271  Sum_probs=188.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++.    +.++.++.+|++|.++++++++++.++
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY----PDRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC----TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999999998877665543    246899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.++...|++||
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  155 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEET-TERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATK  155 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHH
T ss_pred             CCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHH
Confidence            9999999999998866655553 4578999999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccC--cCCCccch-HHHHhh---hhcCCCCCCHHHHHHHHHHh
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLN--KNGKLEVD-QEIRDV---QISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~-~~~~~~---~~~~~~~~~p~evA~~i~~l  274 (287)
                      ++++++++.++.|++++ |+||+|+||+++|++.......  +....... ......   ..+..+..+|+|+|++++++
T Consensus       156 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~  235 (281)
T 3m1a_A          156 AALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLA  235 (281)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHH
Confidence            99999999999999887 9999999999999987643211  11111100 011111   12334456799999999999


Q ss_pred             hccCC
Q 042560          275 ACRGD  279 (287)
Q Consensus       275 ~~~~~  279 (287)
                      ++++.
T Consensus       236 ~~~~~  240 (281)
T 3m1a_A          236 LDTEK  240 (281)
T ss_dssp             HHSSS
T ss_pred             HhCCC
Confidence            98764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=100.00  E-value=2.1e-38  Score=270.00  Aligned_cols=230  Identities=21%  Similarity=0.234  Sum_probs=188.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++   .  ...++.+|++|+++++++++    +
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~----~   73 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---P--GIEPVCVDLGDWEATERALG----S   73 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--TCEEEECCTTCHHHHHHHHT----T
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CCCEEEEeCCCHHHHHHHHH----H
Confidence            5789999999999999999999999999999999999988777655443   1  24567999999999988876    5


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.+++++.+++|+.+++.+++++.|.|.++  .|+||++||..+..+.++...|++|
T Consensus        74 ~~~id~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  152 (244)
T 3d3w_A           74 VGPVDLLVNNAAVALLQPFLEV-TKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCST  152 (244)
T ss_dssp             CCCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             cCCCCEEEECCccCCCcchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHHH
Confidence            6889999999998765554443 447789999999999999999999998764  4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++++++++.++.|++++ |+|++|+||+++|++.......+    ...+. .....+..++.+|+|+|+++++++++++
T Consensus       153 K~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~dva~~~~~l~~~~~  227 (244)
T 3d3w_A          153 KGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDP----HKAKT-MLNRIPLGKFAEVEHVVNAILFLLSDRS  227 (244)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCST----THHHH-HHHTCTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccCh----HHHHH-HHhhCCCCCCcCHHHHHHHHHHHcCccc
Confidence            999999999999999877 99999999999999865321110    00011 1122233445689999999999999988


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +++||+.+
T Consensus       228 ~~~~G~~~  235 (244)
T 3d3w_A          228 GMTTGSTL  235 (244)
T ss_dssp             TTCCSCEE
T ss_pred             cCCCCCEE
Confidence            89999753

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=2.4e-38  Score=273.46  Aligned_cols=232  Identities=24%  Similarity=0.311  Sum_probs=188.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++|+++||||++|||++++++|+++|++|++++|+.++.++..+++... .+.++.++.+|++|+++++++++++.++
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999998887776666442 1336889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++|++|||||...         .++|++.+++|+.+++.+++.++|.|+++    .|+||++||..+..+.++...|+
T Consensus        84 ~g~id~lv~~Ag~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  154 (267)
T 2gdz_A           84 FGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYC  154 (267)
T ss_dssp             HSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHH
T ss_pred             cCCCCEEEECCCCCC---------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHH
Confidence            999999999999742         36788999999999999999999999764    48999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--HHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCcc-chHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETL--RVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLE-VDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~l--a~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      ++|++++++++.+  +.|+++. |+||+|+||+++|++............. ...+......+..++.+|+|+|+.++++
T Consensus       155 ~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l  234 (267)
T 2gdz_A          155 ASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL  234 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence            9999999999995  6888877 9999999999999986532110000000 0000011111223456899999999999


Q ss_pred             hccCCccccCCC
Q 042560          275 ACRGDRYLTQPS  286 (287)
Q Consensus       275 ~~~~~~~itG~~  286 (287)
                      ++++  ++||+.
T Consensus       235 ~s~~--~~~G~~  244 (267)
T 2gdz_A          235 IEDD--ALNGAI  244 (267)
T ss_dssp             HHCT--TCSSCE
T ss_pred             hcCc--CCCCcE
Confidence            9975  488875

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=100.00  E-value=1.7e-38  Score=272.43  Aligned_cols=225  Identities=19%  Similarity=0.235  Sum_probs=184.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCH-HHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAEL-MGSPFALAIPADVSKV-EDCKHFVDVT  119 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~-~~v~~~~~~~  119 (287)
                      |++++|+++||||++|||++++++|+++|++ |++++|+...  +..+++.. ..+.++.++.+|++|+ ++++++++++
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   78 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKI   78 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHH
Confidence            5688999999999999999999999999996 9999998642  12222222 2234788999999998 9999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCCh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRMS  195 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~~  195 (287)
                      .++++++|++|||||..         +.+++++.+++|+.+++.++++++|.|.++    +|+||++||..+..+.++..
T Consensus        79 ~~~~g~id~lv~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  149 (254)
T 1sby_A           79 FDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVP  149 (254)
T ss_dssp             HHHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSH
T ss_pred             HHhcCCCCEEEECCccC---------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCch
Confidence            99999999999999973         237789999999999999999999999664    47999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|++||++++++++.++.++++. |+||+|+||+++|++........     ...+.........|+++|||+|+.++++
T Consensus       150 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~dvA~~i~~~  224 (254)
T 1sby_A          150 VYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWL-----DVEPRVAELLLSHPTQTSEQCGQNFVKA  224 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGG-----GSCTTHHHHHTTSCCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhh-----hhhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999999999999998755 99999999999999865421100     0011122334456778999999999999


Q ss_pred             hccCCccccCCC
Q 042560          275 ACRGDRYLTQPS  286 (287)
Q Consensus       275 ~~~~~~~itG~~  286 (287)
                      ++   ++++|+.
T Consensus       225 ~~---~~~~G~~  233 (254)
T 1sby_A          225 IE---ANKNGAI  233 (254)
T ss_dssp             HH---HCCTTCE
T ss_pred             HH---cCCCCCE
Confidence            96   4677764

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=100.00  E-value=1.1e-39  Score=277.92  Aligned_cols=216  Identities=14%  Similarity=0.125  Sum_probs=184.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ..++|+++||||++|||++++++|+++|++|++++|+.++.+           .....+.+|++|+++++++++++.+++
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~~~~~~   72 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----------SASVIVKMTDSFTEQADQVTAEVGKLL   72 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----------SEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-----------CCcEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            347899999999999999999999999999999999876532           135678899999999999999999999


Q ss_pred             --CCccEEEEccccCCCCCC-CCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          124 --GRLDHLVTNAGVVPMCLF-EDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       124 --~~idvli~nag~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                        +++|++|||||.....++ .+ .+.+++++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+++
T Consensus        73 ~~g~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~as  150 (241)
T 1dhr_A           73 GDQKVDAILCVAGGWAGGNAKSK-SLFKNCDLMWKQSIWTSTISSHLATKHLKE-GGLLTLAGAKAALDGTPGMIGYGMA  150 (241)
T ss_dssp             TTCCEEEEEECCCCCCCBCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCGGGGSCCTTBHHHHHH
T ss_pred             CCCCCCEEEEcccccCCCCCccc-CCHHHHHHHHHHhhHHHHHHHHHHHHhhcc-CCEEEEECCHHHccCCCCchHHHHH
Confidence              799999999998766554 33 344778999999999999999999999975 5899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |++++++++.++.|++  +. |+||+|+||+++|++.......+        .       ..+..+|||+|+.+++++++
T Consensus       151 K~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~~~~--------~-------~~~~~~~~~vA~~v~~l~~~  215 (241)
T 1dhr_A          151 KGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEA--------D-------FSSWTPLEFLVETFHDWITG  215 (241)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTS--------C-------GGGSEEHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccCcch--------h-------hccCCCHHHHHHHHHHHhcC
Confidence            9999999999999998  77 99999999999999865321100        0       01234589999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++++||+.+
T Consensus       216 ~~~~~~G~~~  225 (241)
T 1dhr_A          216 NKRPNSGSLI  225 (241)
T ss_dssp             TTCCCTTCEE
T ss_pred             CCcCccceEE
Confidence            9999999853

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=100.00  E-value=6.2e-39  Score=275.09  Aligned_cols=231  Identities=30%  Similarity=0.376  Sum_probs=195.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++|+++||||++|||++++++|+++|++|++++|+ .+++++..++++..+ .++.++.+|++|+++++++++++.++
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG-GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999 788887777776554 47899999999999999999999999


Q ss_pred             cCCccEEEEcccc-CCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC------CEEEEEcCCCCCC-CCCCC
Q 042560          123 FGRLDHLVTNAGV-VPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK------GKIIVVASAAGWL-PPPRM  194 (287)
Q Consensus       123 ~~~idvli~nag~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~------g~iv~isS~~~~~-~~~~~  194 (287)
                      ++++|++|||||. ....++.+ .+.+++++.+++|+.+++.++++++|.|.+++      ++||++||..+.. +.++.
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~  161 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPE-IDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGA  161 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTC
T ss_pred             cCCCCEEEECCCCcCCcCcccc-CCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCc
Confidence            9999999999997 44444433 34467899999999999999999999986543      8999999998877 78889


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc---CCCCCCHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---LLPVQPTEECAKA  270 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~evA~~  270 (287)
                      ..|+++|++++.+++.++.+++++ |+||+|+||+++|++....          .++..+....   ..++.+|+|+|++
T Consensus       162 ~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~----------~~~~~~~~~~~~~~~~~~~~~dva~~  231 (258)
T 3afn_B          162 GLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK----------TQDVRDRISNGIPMGRFGTAEEMAPA  231 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC----------CHHHHHHHHTTCTTCSCBCGGGTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc----------CHHHHHHHhccCCCCcCCCHHHHHHH
Confidence            999999999999999999999877 9999999999999986532          1222222222   2345589999999


Q ss_pred             HHHhhccCCc-cccCCC
Q 042560          271 IVNSACRGDR-YLTQPS  286 (287)
Q Consensus       271 i~~l~~~~~~-~itG~~  286 (287)
                      ++++++++++ ++||+.
T Consensus       232 ~~~l~~~~~~~~~~G~~  248 (258)
T 3afn_B          232 FLFFASHLASGYITGQV  248 (258)
T ss_dssp             HHHHHCHHHHTTCCSEE
T ss_pred             HHHHhCcchhccccCCE
Confidence            9999998777 899874

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=100.00  E-value=6.9e-39  Score=305.38  Aligned_cols=221  Identities=24%  Similarity=0.353  Sum_probs=184.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++||+++||||++|||+++|++|+++|++|++++++.  .++..+++...+ .++..+.+|++  ++.+++++++.++
T Consensus       318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~g-~~~~~~~~Dv~--~~~~~~~~~~~~~  392 (604)
T 2et6_A          318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAAG-GEAWPDQHDVA--KDSEAIIKNVIDK  392 (604)
T ss_dssp             CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHTT-CEEEEECCCHH--HHHHHHHHHHHHH
T ss_pred             cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhcC-CeEEEEEcChH--HHHHHHHHHHHHh
Confidence            478999999999999999999999999999999998742  344555665544 36777788873  5567888999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +|++|+||||||+....++.+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..+..+.+++..|++||
T Consensus       393 ~G~iDiLVnNAGi~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asK  471 (604)
T 2et6_A          393 YGTIDILVNNAGILRDRSFAKM-SKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSK  471 (604)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHH
Confidence            9999999999999876666554 4588999999999999999999999997654 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|+.+|+++|+.|++++ ||||+|+||+ +|+|....+.         ++       .....+|||||+.++||++++++
T Consensus       472 aal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~~~~---------~~-------~~~~~~pe~vA~~v~~L~s~~~~  534 (604)
T 2et6_A          472 AGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLSIMR---------EQ-------DKNLYHADQVAPLLVYLGTDDVP  534 (604)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC-------------------------CCSSCGGGTHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccccCc---------hh-------hccCCCHHHHHHHHHHHhCCccC
Confidence            99999999999999988 9999999996 9998654211         00       11245899999999999999988


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                       +||+.+
T Consensus       535 -itG~~~  540 (604)
T 2et6_A          535 -VTGETF  540 (604)
T ss_dssp             -CCSCEE
T ss_pred             -CCCcEE
Confidence             999853

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=100.00  E-value=2.4e-38  Score=269.55  Aligned_cols=231  Identities=28%  Similarity=0.343  Sum_probs=194.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEE-EeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALA-IPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|+++||||++|||++++++|+++|++|+++ +|+.++.++..+++...+. ++.. +.+|++|.++++++++++.++++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGS-PLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTC-SCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC-ceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999999999998 8998888877777765543 4666 89999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|++++ ++||++||..+..+.++...|+++|++
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a  158 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRM-KDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAG  158 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccC-CHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHH
Confidence            99999999998765554443 4478899999999999999999999997654 899999999988888999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      ++++++.++.|+.+. |++++|+||+++|++.....       ....+......+..++.+|+|+|++++++++++++++
T Consensus       159 ~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~  231 (245)
T 2ph3_A          159 LIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLP-------QEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYI  231 (245)
T ss_dssp             HHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC-------HHHHHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTC
T ss_pred             HHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcC-------HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccc
Confidence            999999999999876 99999999999999865321       0011111122233445689999999999999988899


Q ss_pred             cCCC
Q 042560          283 TQPS  286 (287)
Q Consensus       283 tG~~  286 (287)
                      +|+.
T Consensus       232 ~G~~  235 (245)
T 2ph3_A          232 TGQT  235 (245)
T ss_dssp             CSCE
T ss_pred             cCCE
Confidence            9975

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=100.00  E-value=7.3e-38  Score=270.85  Aligned_cols=245  Identities=23%  Similarity=0.345  Sum_probs=199.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ...+++++|+++||||++|||++++++|+++|++|++++| +.+.+++..++++..+ .++.++.+|++|++++++++++
T Consensus        14 ~~~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           14 DASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-AQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             --CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHH
Confidence            3457789999999999999999999999999999999999 7777777777776544 3688999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....+..+. +.+++++.+++|+.+++.++++++|.|++ +|+||++||..+. .+.++...|
T Consensus        93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~~Y  170 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGMEVWCDELEV-TQELFDKVFNLNTRGQFFVAQQGLKHCRR-GGRIILTSSIAAVMTGIPNHALY  170 (274)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHEEE-EEEEEEECCGGGTCCSCCSCHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCEEEEEcChHhccCCCCCCchH
Confidence            99999999999999998766554443 44778999999999999999999999874 4899999999988 778889999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCc-CC--CccchHHHHhhh---hcCCCCCCHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNK-NG--KLEVDQEIRDVQ---ISLLPVQPTEECAKA  270 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~-~~--~~~~~~~~~~~~---~~~~~~~~p~evA~~  270 (287)
                      +++|++++.+++.++.++++. |++++++||+++|++.......- ..  .....++..+..   .+...+.+|+|+|++
T Consensus       171 ~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~  250 (274)
T 1ja9_A          171 AGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRA  250 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcCCCCCccCHHHHHHH
Confidence            999999999999999999876 99999999999999865211100 00  000102222222   233345589999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      +++++++++++++|+.+
T Consensus       251 i~~l~~~~~~~~~G~~~  267 (274)
T 1ja9_A          251 VSALCQEESEWINGQVI  267 (274)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHhCcccccccCcEE
Confidence            99999998889999753

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=100.00  E-value=7.9e-39  Score=288.69  Aligned_cols=229  Identities=12%  Similarity=0.013  Sum_probs=183.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHH------------HHHHHHHhcCCCeeEEEeecCCCHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLR------------EVADQAELMGSPFALAIPADVSKVEDC  112 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~D~~~~~~v  112 (287)
                      .+|++|||||++|||+++|+.|++ +|++|++++|+.+..+            ...++++..+ .++..+.+|++|++++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G-~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAG-LYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTT-CCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcC-CcEEEEEecCCCHHHH
Confidence            599999999999999999999999 9999999999765432            1234444444 4688999999999999


Q ss_pred             HHHHHHHHHhc-CCccEEEEccccC-------------CCCCCC--------------------CCCCCCCcccchhehh
Q 042560          113 KHFVDVTMEHF-GRLDHLVTNAGVV-------------PMCLFE--------------------DYTDITKPAPAMDINF  158 (287)
Q Consensus       113 ~~~~~~~~~~~-~~idvli~nag~~-------------~~~~~~--------------------~~~~~~~~~~~~~~n~  158 (287)
                      +++++++.+++ |++|+||||||..             ...++.                    ...+.++|++.+++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~  218 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG  218 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence            99999999999 9999999999973             222221                    1134467888999998


Q ss_pred             hhHH-HHHHHHHH-HHhcCCCEEEEEcCCCCCCCCCCC--hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCC
Q 042560          159 WGSA-YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRM--SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEI  233 (287)
Q Consensus       159 ~~~~-~l~~~~~~-~l~~~~g~iv~isS~~~~~~~~~~--~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~  233 (287)
                      .+.+ .+++++++ .|.+++|+||++||..+..+.|.+  ++|++||+|+.+|+++|+.|++++ ||||+|+||+++|++
T Consensus       219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG~i~T~~  298 (422)
T 3s8m_A          219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQA  298 (422)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTT
T ss_pred             hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCCccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcCCCcChh
Confidence            8887 77888766 455556899999999999888866  999999999999999999999998 999999999999999


Q ss_pred             cCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcccc
Q 042560          234 TGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT  283 (287)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~it  283 (287)
                      ......       .+........+..+.++|||||+.+.||+++.- |.+
T Consensus       299 ~~~ip~-------~~~~~~~~~~~m~r~G~pEdva~~v~~L~sd~l-y~~  340 (422)
T 3s8m_A          299 SAAIPV-------MPLYISMVYKIMKEKGLHEGTIEQLDRLFRERL-YRQ  340 (422)
T ss_dssp             GGGSTH-------HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-TCT
T ss_pred             hhcCCC-------ChHHHHHHHhhhcCCcChHHHHHHHHHHhcchh-hcc
Confidence            765311       111112222345667889999999999999853 654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=100.00  E-value=7e-38  Score=275.49  Aligned_cols=220  Identities=24%  Similarity=0.284  Sum_probs=183.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~  119 (287)
                      +...+++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++...++.++.++.+|++|. ++++++++++
T Consensus         6 ~~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A            6 PNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             ------CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHH
Confidence            344568999999999999999999999999999999999999999998888877666799999999998 9999999999


Q ss_pred             HHhcCCccEEEEccccCCCC------------------------------CCCCCCCCCCcccchhehhhhHHHHHHHHH
Q 042560          120 MEHFGRLDHLVTNAGVVPMC------------------------------LFEDYTDITKPAPAMDINFWGSAYGTYFAI  169 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~------------------------------~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  169 (287)
                      .++++++|++|||||+....                              +..+ .+.+.+++.+++|+.+++.+++.++
T Consensus        86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~  164 (311)
T 3o26_A           86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMS-ETYELAEECLKINYNGVKSVTEVLI  164 (311)
T ss_dssp             HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEE-CCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccc-cchhhhhhheeeeeehHHHHHHHhh
Confidence            99999999999999987432                              1112 2346678889999999999999999


Q ss_pred             HHHhcCC-CEEEEEcCCCCCCCC-------------------------------------------CCChhhhhhHHHHH
Q 042560          170 PYLKQTK-GKIIVVASAAGWLPP-------------------------------------------PRMSFYNASKAAKI  205 (287)
Q Consensus       170 ~~l~~~~-g~iv~isS~~~~~~~-------------------------------------------~~~~~Y~asKaal~  205 (287)
                      |.|++++ |+||++||..+..+.                                           ++...|++||+|++
T Consensus       165 ~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~  244 (311)
T 3o26_A          165 PLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN  244 (311)
T ss_dssp             HHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHH
T ss_pred             HhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHH
Confidence            9998655 899999999887543                                           45678999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccC
Q 042560          206 ALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       206 ~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG  284 (287)
                      ++++.++.++++ |+||+|+||+|+|+|....                      +..+|++.|+.+++++..+...-+|
T Consensus       245 ~~~~~la~e~~~-i~v~~v~PG~v~T~~~~~~----------------------~~~~~~~~a~~~~~~~~~~~~~~~g  300 (311)
T 3o26_A          245 AYTRVLANKIPK-FQVNCVCPGLVKTEMNYGI----------------------GNYTAEEGAEHVVRIALFPDDGPSG  300 (311)
T ss_dssp             HHHHHHHHHCTT-SEEEEECCCSBCSGGGTTC----------------------CSBCHHHHHHHHHHHHTCCSSCCCS
T ss_pred             HHHHHHHhhcCC-ceEEEecCCceecCCcCCC----------------------CCCCHHHHHHHHHHHHhCCCCCCCc
Confidence            999999999965 9999999999999986532                      1236899999999998765444333

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=100.00  E-value=2.4e-38  Score=270.93  Aligned_cols=226  Identities=23%  Similarity=0.291  Sum_probs=179.8

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +.+..++++|+++||||++|||++++++|+++|++|++++|+.+..++    +   +  .+..+ +|+  .+++++++++
T Consensus        11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----~---~--~~~~~-~D~--~~~~~~~~~~   78 (249)
T 1o5i_A           11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR----S---G--HRYVV-CDL--RKDLDLLFEK   78 (249)
T ss_dssp             -----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----T---C--SEEEE-CCT--TTCHHHHHHH
T ss_pred             hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHh----h---C--CeEEE-eeH--HHHHHHHHHH
Confidence            345677899999999999999999999999999999999998743322    1   2  46667 999  5567776665


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +    .++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++ |+||++||..+..+.++...|
T Consensus        79 ~----~~iD~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  153 (249)
T 1o5i_A           79 V----KEVDILVLNAGGPKAGFFDEL-TNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTS  153 (249)
T ss_dssp             S----CCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHH
T ss_pred             h----cCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCCCCCchH
Confidence            4    389999999998766555443 4478999999999999999999999997654 899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|++++++++.++.|++++ |+||+|+||+++|++.....  +    ...+.......+..++.+|||+|+++++|++
T Consensus       154 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~----~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~s  227 (249)
T 1o5i_A          154 NSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL--S----EEKKKQVESQIPMRRMAKPEEIASVVAFLCS  227 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS--C----HHHHHHHHTTSTTSSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccc--h----hhHHHHHHhcCCCCCCcCHHHHHHHHHHHcC
Confidence            999999999999999999887 99999999999999864210  0    0001011122233445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++++||+.+
T Consensus       228 ~~~~~~tG~~~  238 (249)
T 1o5i_A          228 EKASYLTGQTI  238 (249)
T ss_dssp             GGGTTCCSCEE
T ss_pred             ccccCCCCCEE
Confidence            99999999853

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=4.9e-39  Score=272.93  Aligned_cols=215  Identities=14%  Similarity=0.165  Sum_probs=182.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  123 (287)
                      |++|+++||||++|||++++++|+++|++|++++|+.++.+           .....+.+|++|.++++++++++.+++ 
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~   69 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----------DSNILVDGNKNWTEQEQSILEQTASSLQ   69 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----------SEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-----------cccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999876532           135678899999999999999999998 


Q ss_pred             -CCccEEEEccccCCCCCC-CCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 -GRLDHLVTNAGVVPMCLF-EDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 -~~idvli~nag~~~~~~~-~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       +++|++|||||.....++ .+ .+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.++...|+++|
T Consensus        70 ~g~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~Y~~sK  147 (236)
T 1ooe_A           70 GSQVDGVFCVAGGWAGGSASSK-DFVKNADLMIKQSVWSSAIAAKLATTHLKP-GGLLQLTGAAAAMGPTPSMIGYGMAK  147 (236)
T ss_dssp             TCCEEEEEECCCCCCCBCTTST-THHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCGGGGSCCTTBHHHHHHH
T ss_pred             CCCCCEEEECCcccCCCCCccc-CCHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCEEEEECchhhccCCCCcHHHHHHH
Confidence             799999999998765554 33 344778999999999999999999999975 58999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHH-Hhhcc
Q 042560          202 AAKIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV-NSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~-~l~~~  277 (287)
                      +++++|++.++.|++  ++ |+||+|+||+++|++........               ...+..+|||+|+.++ +++++
T Consensus       148 ~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~---------------~~~~~~~~~dvA~~i~~~l~s~  212 (236)
T 1ooe_A          148 AAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNA---------------DHSSWTPLSFISEHLLKWTTET  212 (236)
T ss_dssp             HHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTC---------------CGGGCBCHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchhhcCCCc---------------cccccCCHHHHHHHHHHHHcCC
Confidence            999999999999997  77 99999999999999865321100               0112346999999999 55588


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++++||+.+
T Consensus       213 ~~~~~~G~~~  222 (236)
T 1ooe_A          213 SSRPSSGALL  222 (236)
T ss_dssp             GGCCCTTCEE
T ss_pred             CcccccccEE
Confidence            8999999853

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=100.00  E-value=3.8e-38  Score=275.66  Aligned_cols=224  Identities=21%  Similarity=0.253  Sum_probs=178.0

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.++++||+++||||++|||++++++|+++|++|++++|+.++.++..+++    +.++.++.+|++|.++++++++++
T Consensus         9 ~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~   84 (291)
T 3rd5_A            9 ADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM----AGQVEVRELDLQDLSSVRRFADGV   84 (291)
T ss_dssp             GGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS----SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred             hhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----cCCeeEEEcCCCCHHHHHHHHHhc
Confidence            3556789999999999999999999999999999999999998887765554    347999999999999999988766


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---------  190 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---------  190 (287)
                          +++|++|||||+....  .+ .+.+++++.+++|+.+++.++++++|.|.+   +||++||..+..+         
T Consensus        85 ----~~iD~lv~nAg~~~~~--~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---riv~isS~~~~~~~~~~~~~~~  154 (291)
T 3rd5_A           85 ----SGADVLINNAGIMAVP--YA-LTVDGFESQIGTNHLGHFALTNLLLPRLTD---RVVTVSSMAHWPGRINLEDLNW  154 (291)
T ss_dssp             ----CCEEEEEECCCCCSCC--CC-BCTTSCBHHHHHHTHHHHHHHHHHGGGEEE---EEEEECCGGGTTCCCCSSCTTC
T ss_pred             ----CCCCEEEECCcCCCCc--cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---heeEeechhhccCCCCcccccc
Confidence                7899999999987532  22 345889999999999999999999999875   8999999988754         


Q ss_pred             ----CCCChhhhhhHHHHHHHHHHHHHHhCCC---eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC-
Q 042560          191 ----PPRMSFYNASKAAKIALYETLRVEFGGD---IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ-  262 (287)
Q Consensus       191 ----~~~~~~Y~asKaal~~~~~~la~e~~~~---i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  262 (287)
                          .++...|++||+|+++|++.++.|++++   |+||+|+||+++|++.+......       .+.... ....++. 
T Consensus       155 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~-------~~~~~~-~~~~~~~~  226 (291)
T 3rd5_A          155 RSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKL-------GDALMS-AATRVVAT  226 (291)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------CH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHH-------HHHHHH-HHHHHHhC
Confidence                3456789999999999999999999743   99999999999999986531110       011111 1122233 


Q ss_pred             CHHHHHHHHHHhhccCCccccCCCC
Q 042560          263 PTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +|||+|+++++++++  +++||+.+
T Consensus       227 ~~~~~A~~~~~l~~~--~~~~G~~~  249 (291)
T 3rd5_A          227 DADFGARQTLYAASQ--DLPGDSFV  249 (291)
T ss_dssp             HHHHHHHHHHHHHHS--CCCTTCEE
T ss_pred             CHHHHHHHHHHHHcC--CCCCCcee
Confidence            499999999999998  48999853

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.2e-37  Score=274.72  Aligned_cols=234  Identities=25%  Similarity=0.253  Sum_probs=179.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-----hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-----ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      |++++|+++||||++|||+++|++|+++|++|++++|+     .+.++++.+.+...+ .++.++.+|++|+++++++++
T Consensus         1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~Dvtd~~~v~~~~~   79 (324)
T 3u9l_A            1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDND-VDLRTLELDVQSQVSVDRAID   79 (324)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHT-CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcC-CcEEEEEeecCCHHHHHHHHH
Confidence            56789999999999999999999999999999988775     455566665555544 469999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC-CCCCCh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL-PPPRMS  195 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~-~~~~~~  195 (287)
                      ++.+++|++|++|||||+....++.+. +.+++++.+++|+.+++.++++++|.|++++ |+||++||..+.. +.++..
T Consensus        80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~  158 (324)
T 3u9l_A           80 QIIGEDGRIDVLIHNAGHMVFGPAEAF-TPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLA  158 (324)
T ss_dssp             HHHHHHSCCSEEEECCCCCBCSCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCH
T ss_pred             HHHHHcCCCCEEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcch
Confidence            999999999999999999877666554 4588999999999999999999999997654 8999999999884 456788


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC------------ccchHHHHhhhh-cCCCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK------------LEVDQEIRDVQI-SLLPV  261 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~  261 (287)
                      .|++||+|+++++++++.|+++. |+||+|+||+++|++...........            ....+++.+... ...+.
T Consensus       159 ~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  238 (324)
T 3u9l_A          159 PYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPD  238 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHHHHHHHHTSCTT
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999887 99999999999988653211111100            001112222111 12233


Q ss_pred             CCHHHHHHHHHHhhccC
Q 042560          262 QPTEECAKAIVNSACRG  278 (287)
Q Consensus       262 ~~p~evA~~i~~l~~~~  278 (287)
                      .+|++||++++.++..+
T Consensus       239 ~~p~~vA~aiv~~~~~~  255 (324)
T 3u9l_A          239 ADVSLVADAIVRVVGTA  255 (324)
T ss_dssp             CCTHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHhcCC
Confidence            57899999999998754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.6e-37  Score=269.11  Aligned_cols=225  Identities=27%  Similarity=0.369  Sum_probs=193.0

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +.+.+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..++++..+ .++.++.+|++|.+++++++++
T Consensus        23 ~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~  101 (272)
T 1yb1_A           23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKK  101 (272)
T ss_dssp             --CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC-CeEEEEEeeCCCHHHHHHHHHH
Confidence            345677899999999999999999999999999999999999998888887776654 3689999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +.++++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|.+++ |+||++||..+..+.++...|
T Consensus       102 ~~~~~g~iD~li~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y  180 (272)
T 1yb1_A          102 VKAEIGDVSILVNNAGVVYTSDLFAT-QDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAY  180 (272)
T ss_dssp             HHHHTCCCSEEEECCCCCCCCCCGGG-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHH
T ss_pred             HHHHCCCCcEEEECCCcCCCcchhhC-CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCchhH
Confidence            99999999999999998766554443 3477889999999999999999999997654 899999999999888888999


Q ss_pred             hhhHHHHHHHHHHHHHHhC---CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFG---GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~---~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      +++|++++++++.++.|+.   +. |+|++|+||+++|++...           .      ..+..++.+|+|+|+.+++
T Consensus       181 ~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~-----------~------~~~~~~~~~~~dva~~i~~  243 (272)
T 1yb1_A          181 CSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN-----------P------STSLGPTLEPEEVVNRLMH  243 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC-----------T------HHHHCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc-----------c------cccccCCCCHHHHHHHHHH
Confidence            9999999999999999995   44 999999999999998531           0      0122456789999999999


Q ss_pred             hhccCCccc
Q 042560          274 SACRGDRYL  282 (287)
Q Consensus       274 l~~~~~~~i  282 (287)
                      ++.++..++
T Consensus       244 ~~~~~~~~~  252 (272)
T 1yb1_A          244 GILTEQKMI  252 (272)
T ss_dssp             HHHTTCSEE
T ss_pred             HHHcCCCEE
Confidence            998876543

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=100.00  E-value=1.6e-38  Score=278.79  Aligned_cols=236  Identities=18%  Similarity=0.151  Sum_probs=182.3

Q ss_pred             CCCCCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHH-------HHHHHHHhc--CC--CeeEEEeec---
Q 042560           42 AEDVAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLR-------EVADQAELM--GS--PFALAIPAD---  105 (287)
Q Consensus        42 ~~~~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~-------~~~~~~~~~--~~--~~~~~~~~D---  105 (287)
                      .|++++|+++||||+  +|||+++|++|+++|++|++++|+...-.       +..++.+..  +.  .....+.+|   
T Consensus         3 ~~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T 1d7o_A            3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             ccccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceec
Confidence            467899999999999  99999999999999999999997642110       000011110  10  012333333   


Q ss_pred             -----CC------------CHHHHHHHHHHHHHhcCCccEEEEccccCC--CCCCCCCCCCCCcccchhehhhhHHHHHH
Q 042560          106 -----VS------------KVEDCKHFVDVTMEHFGRLDHLVTNAGVVP--MCLFEDYTDITKPAPAMDINFWGSAYGTY  166 (287)
Q Consensus       106 -----~~------------~~~~v~~~~~~~~~~~~~idvli~nag~~~--~~~~~~~~~~~~~~~~~~~n~~~~~~l~~  166 (287)
                           ++            ++++++++++++.++++++|++|||||...  ..++.+ .+.++|++.+++|+.+++.+++
T Consensus        83 ~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~-~~~~~~~~~~~vN~~g~~~l~~  161 (297)
T 1d7o_A           83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLE-TSRKGYLAAISASSYSFVSLLS  161 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGG-CCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCccc-CCHHHHHHHHHHhhhHHHHHHH
Confidence                 32            267899999999999999999999999754  333334 3457899999999999999999


Q ss_pred             HHHHHHhcCCCEEEEEcCCCCCCCCCCC-hhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCcccCcCC
Q 042560          167 FAIPYLKQTKGKIIVVASAAGWLPPPRM-SFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFLNKNG  243 (287)
Q Consensus       167 ~~~~~l~~~~g~iv~isS~~~~~~~~~~-~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~~~~~  243 (287)
                      +++|.|++ +|+||++||..+..+.+++ ..|++||+|+++|++.++.|+++ + |+||+|+||+++|++.....     
T Consensus       162 ~~~~~m~~-~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~~~-----  235 (297)
T 1d7o_A          162 HFLPIMNP-GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIG-----  235 (297)
T ss_dssp             HHGGGEEE-EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCS-----
T ss_pred             HHHHHhcc-CceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhhcc-----
Confidence            99999976 5899999999999988887 69999999999999999999974 4 99999999999999865421     


Q ss_pred             CccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          244 KLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       244 ~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                         ..++..+.   ..+..++++|||+|+.+++|++++++|+||+.+
T Consensus       236 ---~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i  279 (297)
T 1d7o_A          236 ---FIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI  279 (297)
T ss_dssp             ---HHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ---ccHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence               11222222   234445678999999999999999999999853

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=100.00  E-value=1.9e-37  Score=263.89  Aligned_cols=227  Identities=19%  Similarity=0.246  Sum_probs=188.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++|+++||||++|||++++++|+++|++|++++|+.+++++..++.   .  .+.++.+|++|.++++++++    .
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~----~   73 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---P--GIEPVCVDLGDWDATEKALG----G   73 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T--TCEEEECCTTCHHHHHHHHT----T
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c--CCCcEEecCCCHHHHHHHHH----H
Confidence            4578999999999999999999999999999999999988776655432   1  25567999999999988876    5


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|.|.++  .|+||++||..+..+.++...|+++
T Consensus        74 ~~~id~vi~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~s  152 (244)
T 1cyd_A           74 IGPVDLLVNNAALVIMQPFLEV-TKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSST  152 (244)
T ss_dssp             CCCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             cCCCCEEEECCcccCCCCcccC-CHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCCCcchhHHH
Confidence            6889999999998765554443 447889999999999999999999998764  4899999999999998999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |++++.+++.++.++++. |++++++||+++|++......        .++..+.   ..+..++.+|+|+|++++++++
T Consensus       153 K~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~  224 (244)
T 1cyd_A          153 KGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA--------DPEFARKLKERHPLRKFAEVEDVVNSILFLLS  224 (244)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC--------CHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcccccccc--------CHHHHHHHHhcCCccCCCCHHHHHHHHHHHhC
Confidence            999999999999999876 999999999999987542110        1122122   2233445689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++++||+.+
T Consensus       225 ~~~~~~~G~~~  235 (244)
T 1cyd_A          225 DRSASTSGGGI  235 (244)
T ss_dssp             GGGTTCCSSEE
T ss_pred             chhhcccCCEE
Confidence            98899999853

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=2.3e-37  Score=263.76  Aligned_cols=216  Identities=22%  Similarity=0.287  Sum_probs=179.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++|+++||||++|||++++++|+++|  ++|++++|+.++.+++.+.    .+.++.++.+|++|.++++++++++.++
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI----KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC----CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc----cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            468999999999999999999999999  9999999998876654322    2346899999999999999999999999


Q ss_pred             cC--CccEEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC------------CCEEEEEcCCCC
Q 042560          123 FG--RLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT------------KGKIIVVASAAG  187 (287)
Q Consensus       123 ~~--~idvli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~------------~g~iv~isS~~~  187 (287)
                      ++  ++|++|||||... ..++.+ .+.+++++.+++|+.+++.++++++|.|.++            .++||++||..+
T Consensus        77 ~g~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  155 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLLSYGTNTE-PNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG  155 (250)
T ss_dssp             HGGGCCCEEEECCCCCCCBCTTSC-CCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred             cCCCCCcEEEECCcccCCCccccc-CCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence            88  9999999999876 444444 3447789999999999999999999998764            689999999998


Q ss_pred             CCCC-------CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC
Q 042560          188 WLPP-------PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL  259 (287)
Q Consensus       188 ~~~~-------~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (287)
                      ..+.       ++...|+++|++++++++.++.++++. |+|++|+||+++|++...                      .
T Consensus       156 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------------------~  213 (250)
T 1yo6_A          156 SITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK----------------------N  213 (250)
T ss_dssp             CSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------------
T ss_pred             ccCCcccccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC----------------------C
Confidence            8776       578899999999999999999999876 999999999999998642                      1


Q ss_pred             CCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          260 PVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       260 ~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +..+|||+|+.+++++++++++++|+.+
T Consensus       214 ~~~~~~~~a~~~~~~~~~~~~~~~G~~~  241 (250)
T 1yo6_A          214 AALTVEQSTAELISSFNKLDNSHNGRFF  241 (250)
T ss_dssp             -----HHHHHHHHHHHTTCCGGGTTCEE
T ss_pred             CCCCHHHHHHHHHHHHhcccccCCCeEE
Confidence            2457999999999999999889999853

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=100.00  E-value=3e-38  Score=280.68  Aligned_cols=239  Identities=25%  Similarity=0.242  Sum_probs=181.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh-----cCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-----MGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ++|+++||||++|||++++++|+++|++|++++|+...+++..+.++.     ..+.++.++.+|++|.++++++++++.
T Consensus         1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            478999999999999999999999999998888765443333322221     123468899999999999999999873


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                        .+++|++|||||.....++.+. +.++|++++++|+.+++.++++++|.|+++ .|+||++||..+..+.++...|++
T Consensus        81 --~g~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~a  157 (327)
T 1jtv_A           81 --EGRVDVLVCNAGLGLLGPLEAL-GEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCA  157 (327)
T ss_dssp             --TSCCSEEEECCCCCCCSCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHH
T ss_pred             --cCCCCEEEECCCcCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHH
Confidence              5899999999998766555443 457899999999999999999999999754 489999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC----ccchHHHHhhhhc-----CCCC-CCHHHHH
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK----LEVDQEIRDVQIS-----LLPV-QPTEECA  268 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~-~~p~evA  268 (287)
                      ||+++++|++.++.|+++. |+||+|+||+++|++...........    .....+.++....     ..++ .+|||||
T Consensus       158 SK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA  237 (327)
T 1jtv_A          158 SKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA  237 (327)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Confidence            9999999999999999887 99999999999999976432110000    0000011111110     0112 4799999


Q ss_pred             HHHHHhhcc---CCccccCCCC
Q 042560          269 KAIVNSACR---GDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~---~~~~itG~~~  287 (287)
                      +.+++++++   ..+|+||+.+
T Consensus       238 ~~i~~l~~~~~~~~~~~tg~~~  259 (327)
T 1jtv_A          238 EVFLTALRAPKPTLRYFTTERF  259 (327)
T ss_dssp             HHHHHHHHCSSCCSEEESCSTT
T ss_pred             HHHHHHHcCCCCCeEEEeCchH
Confidence            999999985   4689999864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=100.00  E-value=1.2e-37  Score=275.72  Aligned_cols=222  Identities=24%  Similarity=0.292  Sum_probs=187.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe---------CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA---------RRERQLREVADQAELMGSPFALAIPADVSKVEDC  112 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~---------r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v  112 (287)
                      .+++++|+++||||++|||++++++|+++|++|++++         |+.++.++..+++...+. .   ..+|++|.+++
T Consensus         4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~---~~~D~~~~~~~   79 (319)
T 1gz6_A            4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-K---AVANYDSVEAG   79 (319)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-E---EEEECCCGGGH
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-e---EEEeCCCHHHH
Confidence            4678999999999999999999999999999999964         567777777777766543 2   35899999999


Q ss_pred             HHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC
Q 042560          113 KHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP  191 (287)
Q Consensus       113 ~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~  191 (287)
                      +++++++.++++++|++|||||+....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..+.
T Consensus        80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~  158 (319)
T 1gz6_A           80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN  158 (319)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC
Confidence            99999999999999999999998766554443 4478999999999999999999999997654 899999999998888


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~  270 (287)
                      +++..|++||+++++|++.++.|+++. |+||+|+||++ |++.....         .++..+       ..+|+|+|+.
T Consensus       159 ~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~---------~~~~~~-------~~~p~dvA~~  221 (319)
T 1gz6_A          159 FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM---------PEDLVE-------ALKPEYVAPL  221 (319)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS---------CHHHHH-------HSCGGGTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC---------Chhhhc-------cCCHHHHHHH
Confidence            899999999999999999999999887 99999999998 87754311         111111       2479999999


Q ss_pred             HHHhhccCCccccCCC
Q 042560          271 IVNSACRGDRYLTQPS  286 (287)
Q Consensus       271 i~~l~~~~~~~itG~~  286 (287)
                      +++|++++ +++||+.
T Consensus       222 ~~~l~s~~-~~~tG~~  236 (319)
T 1gz6_A          222 VLWLCHES-CEENGGL  236 (319)
T ss_dssp             HHHHTSTT-CCCCSCE
T ss_pred             HHHHhCch-hhcCCCE
Confidence            99999874 6888875

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=100.00  E-value=9.3e-38  Score=279.31  Aligned_cols=232  Identities=12%  Similarity=0.007  Sum_probs=184.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHH------------HHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLR------------EVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      .-.+|+++||||++|||+++|+.|++ +|++|++++|+.+..+            ...+.++..+ .++..+.+|++|++
T Consensus        44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G-~~a~~i~~Dvtd~~  122 (405)
T 3zu3_A           44 ANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKG-LYAKSINGDAFSDE  122 (405)
T ss_dssp             TTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTT-CCEEEEESCTTSHH
T ss_pred             CCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcC-CceEEEECCCCCHH
Confidence            44689999999999999999999999 9999999998755321            2233444444 46889999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccC-------------CCCCC--------------------CCCCCCCCcccchheh
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVV-------------PMCLF--------------------EDYTDITKPAPAMDIN  157 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~-------------~~~~~--------------------~~~~~~~~~~~~~~~n  157 (287)
                      +++++++++.+++|++|+||||||..             ...++                    ....+.++|++.+++|
T Consensus       123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn  202 (405)
T 3zu3_A          123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM  202 (405)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence            99999999999999999999999985             12222                    0223457899999999


Q ss_pred             hhhHH-HHHHHHHH-HHhcCCCEEEEEcCCCCCCCCCCC--hhhhhhHHHHHHHHHHHHHHhCCC--eEEEEEeCCcccC
Q 042560          158 FWGSA-YGTYFAIP-YLKQTKGKIIVVASAAGWLPPPRM--SFYNASKAAKIALYETLRVEFGGD--IGITIVTPGLIES  231 (287)
Q Consensus       158 ~~~~~-~l~~~~~~-~l~~~~g~iv~isS~~~~~~~~~~--~~Y~asKaal~~~~~~la~e~~~~--i~v~~i~PG~v~t  231 (287)
                      ..+.+ .+++++++ .|.+++|+||++||..+..+.|.+  +.|++||+|+.+++++|+.|++++  ||||+|+||+++|
T Consensus       203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaPG~i~T  282 (405)
T 3zu3_A          203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVS  282 (405)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEECCCCCC
T ss_pred             chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEeCCCcC
Confidence            99988 78888775 455556899999999999988887  999999999999999999999874  9999999999999


Q ss_pred             CCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          232 EITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      ++......       .+...........+.++|||||+++.+|+++   +++|+.
T Consensus       283 ~~s~~ip~-------~p~y~~~l~~~mkr~G~~Ed~a~~i~~L~sd---~l~~~~  327 (405)
T 3zu3_A          283 QASSAIPM-------MPLYLSLLFKVMKEKGTHEGCIEQVYSLYKD---SLCGDS  327 (405)
T ss_dssp             HHHHTSTT-------HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---TTSSSC
T ss_pred             chhhcCCC-------CcHHHHHHHHHHhcCCCcHHHHHHHHHHHhc---cccCCC
Confidence            98764321       1111112222345567899999999999988   566653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.9e-38  Score=270.79  Aligned_cols=218  Identities=22%  Similarity=0.269  Sum_probs=155.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++++|+++||||++|||+++|++|++ |++|++++|+.+.+++..+    .  ..+..+.+|+++.++ .+.+.+..++
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~----~--~~~~~~~~D~~~~~~-~~~~~~~~~~   72 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE----I--EGVEPIESDIVKEVL-EEGGVDKLKN   72 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT----S--TTEEEEECCHHHHHH-TSSSCGGGTT
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh----h--cCCcceecccchHHH-HHHHHHHHHh
Confidence            567899999999999999999999998 9999999999888766543    1  248889999998877 4555555667


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      ++++|++|||||.....++.+. +.++|++.+++|+.+++.+++.++|.|++++|+||++||..+..+.++...|++||+
T Consensus        73 ~~~id~lv~~Ag~~~~~~~~~~-~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  151 (245)
T 3e9n_A           73 LDHVDTLVHAAAVARDTTIEAG-SVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPHPGNTIYAASKH  151 (245)
T ss_dssp             CSCCSEEEECC----------C-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------CHHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCchhhC-CHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCCCCchHHHHHHH
Confidence            7899999999999876655543 447899999999999999999999999877799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      |+++|++.++.|++++ |+||+|+||+++|++.........           .......+.+|||+|++++++++++..
T Consensus       152 a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-----------~~~~~~~~~~p~dvA~~i~~l~~~~~~  219 (245)
T 3e9n_A          152 ALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQG-----------TNFRPEIYIEPKEIANAIRFVIDAGET  219 (245)
T ss_dssp             HHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------CCGGGSCHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhhh-----------cccccccCCCHHHHHHHHHHHHcCCCc
Confidence            9999999999999887 999999999999998765422111           111223356899999999999987654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=100.00  E-value=7.9e-38  Score=299.02  Aligned_cols=228  Identities=24%  Similarity=0.290  Sum_probs=175.7

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC---------ChhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR---------RERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      +.+...++++||+++||||++|||+++|++|+++|++|++++|         +.+.+++..++++..+..    ..+|++
T Consensus         9 ~~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~D~~   84 (613)
T 3oml_A            9 SSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE----AVADYN   84 (613)
T ss_dssp             ------CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC----EEECCC
T ss_pred             cCcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe----EEEEeC
Confidence            3445668899999999999999999999999999999999988         666777777888766543    348999


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAA  186 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~  186 (287)
                      |.++++++++++.++++++|++|||||+....++.+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..
T Consensus        85 d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~-~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a  163 (613)
T 3oml_A           85 SVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKT-SEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNS  163 (613)
T ss_dssp             CGGGHHHHHC----------CEECCCCCCCCCCSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHH
T ss_pred             CHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHH
Confidence            9999999999999999999999999999877666554 4588999999999999999999999998765 8999999999


Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHH
Q 042560          187 GWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTE  265 (287)
Q Consensus       187 ~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  265 (287)
                      +..+.++...|++||+|+++|++.++.|++++ |+||+|+||++ |+|.....         .++..       ...+||
T Consensus       164 ~~~~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~---------~~~~~-------~~~~pe  226 (613)
T 3oml_A          164 GIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGIL---------PDILF-------NELKPK  226 (613)
T ss_dssp             HHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC---------CHHHH-------TTCCGG
T ss_pred             HcCCCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhcc---------chhhh-------hcCCHH
Confidence            99999999999999999999999999999987 99999999974 66654321         11111       124799


Q ss_pred             HHHHHHHHhhccCCccccCCCC
Q 042560          266 ECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       266 evA~~i~~l~~~~~~~itG~~~  287 (287)
                      |+|+.+++|+++. +++||+.+
T Consensus       227 dvA~~v~~L~s~~-~~~tG~~i  247 (613)
T 3oml_A          227 LIAPVVAYLCHES-CEDNGSYI  247 (613)
T ss_dssp             GTHHHHHHTTSTT-CCCCSCEE
T ss_pred             HHHHHHHHhcCCC-cCCCceEE
Confidence            9999999999998 99999863

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=100.00  E-value=1.2e-36  Score=265.44  Aligned_cols=223  Identities=31%  Similarity=0.457  Sum_probs=189.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++...+..++.++.+|++|.++++++++++.
T Consensus        22 ~~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~  101 (286)
T 1xu9_A           22 RPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG  101 (286)
T ss_dssp             CGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ChhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999998888887766655578999999999999999999999


Q ss_pred             HhcCCccEEEEc-cccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTN-AGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~n-ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++++++|++||| +|.... +..+ .+.+++++.+++|+.+++.++++++|.|++++|+||++||..+..+.++...|++
T Consensus       102 ~~~g~iD~li~naag~~~~-~~~~-~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  179 (286)
T 1xu9_A          102 KLMGGLDMLILNHITNTSL-NLFH-DDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSA  179 (286)
T ss_dssp             HHHTSCSEEEECCCCCCCC-CCCC-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHH
T ss_pred             HHcCCCCEEEECCccCCCC-cccc-CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCCccHHHH
Confidence            999999999999 565533 2323 2457788999999999999999999999876799999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHh--CCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          200 SKAAKIALYETLRVEF--GGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       200 sKaal~~~~~~la~e~--~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ||++++++++.++.|+  ... |+|++|+||+++|++.......               ....+..+|||+|+.++..+.
T Consensus       180 sK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~---------------~~~~~~~~~~~vA~~i~~~~~  244 (286)
T 1xu9_A          180 SKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG---------------IVHMQAAPKEECALEIIKGGA  244 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG---------------GGGGGCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhccc---------------cccCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998  444 9999999999999986421100               011234579999999999987


Q ss_pred             cCCc
Q 042560          277 RGDR  280 (287)
Q Consensus       277 ~~~~  280 (287)
                      .+..
T Consensus       245 ~~~~  248 (286)
T 1xu9_A          245 LRQE  248 (286)
T ss_dssp             TTCS
T ss_pred             cCCc
Confidence            6543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=100.00  E-value=2.9e-36  Score=260.07  Aligned_cols=225  Identities=18%  Similarity=0.196  Sum_probs=186.7

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcC---CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRR---ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G---~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      ......++++|+++||||++|||++++++|+++|   ++|++++|+.+..+.. +++...+ .++.++.+|++|.+++++
T Consensus        12 ~~~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~-~~~~~~~~Dl~~~~~v~~   89 (267)
T 1sny_A           12 SGLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNH-SNIHILEIDLRNFDAYDK   89 (267)
T ss_dssp             --------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHC-TTEEEEECCTTCGGGHHH
T ss_pred             ccccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccC-CceEEEEecCCChHHHHH
Confidence            3345677889999999999999999999999999   9999999998765544 3333323 368999999999999999


Q ss_pred             HHHHHHHhcC--CccEEEEccccCC-CCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC------------CCEE
Q 042560          115 FVDVTMEHFG--RLDHLVTNAGVVP-MCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT------------KGKI  179 (287)
Q Consensus       115 ~~~~~~~~~~--~idvli~nag~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~------------~g~i  179 (287)
                      +++++.++++  ++|++|||||... ..++.+ .+.+++++.+++|+.+++.+++.++|.|.++            .|+|
T Consensus        90 ~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (267)
T 1sny_A           90 LVADIEGVTKDQGLNVLFNNAGIAPKSARITA-VRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAI  168 (267)
T ss_dssp             HHHHHHHHHGGGCCSEEEECCCCCCCCCCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEE
T ss_pred             HHHHHHHhcCCCCccEEEECCCcCCCcccccc-CCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceE
Confidence            9999999988  8999999999876 444444 3447889999999999999999999999765            5899


Q ss_pred             EEEcCCCCCCCCC---CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh
Q 042560          180 IVVASAAGWLPPP---RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ  255 (287)
Q Consensus       180 v~isS~~~~~~~~---~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~  255 (287)
                      |++||..+..+.+   +...|+++|++++++++.++.+++++ |+|++|+||+++|+|...                   
T Consensus       169 v~isS~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------------------  229 (267)
T 1sny_A          169 INMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS-------------------  229 (267)
T ss_dssp             EEECCGGGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT-------------------
T ss_pred             EEEecccccccCCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC-------------------
Confidence            9999998877653   67889999999999999999999877 999999999999998642                   


Q ss_pred             hcCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          256 ISLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       256 ~~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                         .+..+|+++|+.+++++++.+.+++|+.|
T Consensus       230 ---~~~~~~~~~a~~~~~~~~~~~~~~~G~~~  258 (267)
T 1sny_A          230 ---SAPLDVPTSTGQIVQTISKLGEKQNGGFV  258 (267)
T ss_dssp             ---TCSBCHHHHHHHHHHHHHHCCGGGTTCEE
T ss_pred             ---CCCCCHHHHHHHHHHHHHhcCcCCCCcEE
Confidence               12457999999999999998889998753

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=100.00  E-value=2.5e-36  Score=260.93  Aligned_cols=217  Identities=22%  Similarity=0.256  Sum_probs=184.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++|+++||||++|||++++++|++ +|++|++++|+.++.++..+++...+ .++.++.+|++|.++++++++++.+++
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999 99999999999998888887776654 468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-------------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-------------  190 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-------------  190 (287)
                      +++|++|||||....... .....+++++.+++|+.+++.+++.++|.|++ +|+||++||..+..+             
T Consensus        81 g~id~li~~Ag~~~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~~sS~~~~~~~~~~~~~~~~~~~  158 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVAD-PTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP-QGRVVNVSSIMSVRALKSCSPELQQKFR  158 (276)
T ss_dssp             SSEEEEEECCCCCCCTTC-CSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred             CCCCEEEECCcccccCCC-ccccHHHHHhhhheeeeeHHHHHHHHHHhhCC-CCEEEEECChhhhcccccCChhHHhhcc
Confidence            999999999998754321 11112568889999999999999999998865 589999999866522             


Q ss_pred             -----------------------------CCCChhhhhhHHHHHHHHHHHHHHhCC----C-eEEEEEeCCcccCCCcCC
Q 042560          191 -----------------------------PPRMSFYNASKAAKIALYETLRVEFGG----D-IGITIVTPGLIESEITGG  236 (287)
Q Consensus       191 -----------------------------~~~~~~Y~asKaal~~~~~~la~e~~~----~-i~v~~i~PG~v~t~~~~~  236 (287)
                                                   .| ...|+++|++++.+++.++.++++    . |+|++|+||+++|++...
T Consensus       159 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~  237 (276)
T 1wma_A          159 SETITEEELVGLMNKFVEDTKKGVHQKEGWP-SSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP  237 (276)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT
T ss_pred             ccccchhhhhhhhhhhhhhhcccccccCCCc-cchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc
Confidence                                         12 378999999999999999999976    5 999999999999998642


Q ss_pred             cccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC--CccccCCCC
Q 042560          237 KFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG--DRYLTQPSW  287 (287)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~--~~~itG~~~  287 (287)
                                            .++.+|+|+|+.++++++.+  ++++||+.|
T Consensus       238 ----------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~  268 (276)
T 1wma_A          238 ----------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFV  268 (276)
T ss_dssp             ----------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEE
T ss_pred             ----------------------cccCChhHhhhhHhhhhcCcccccccCceEe
Confidence                                  13568999999999999855  469999854

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=6.6e-36  Score=253.86  Aligned_cols=217  Identities=22%  Similarity=0.233  Sum_probs=180.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||++|||++++++|+++|++|++++|+.+ .            ..+.++.+|++|+++++++++++ +++++
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~------------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~   66 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G------------EDLIYVEGDVTREEDVRRAVARA-QEEAP   66 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S------------SSSEEEECCTTCHHHHHHHHHHH-HHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c------------cceEEEeCCCCCHHHHHHHHHHH-HhhCC
Confidence            3689999999999999999999999999999999865 1            13578899999999999999999 88899


Q ss_pred             ccEEEEccccCCCCCCCCCCCCC----CcccchhehhhhHHHHHHHHHHHHhcCC-------CEEEEEcCCCCCCCCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDIT----KPAPAMDINFWGSAYGTYFAIPYLKQTK-------GKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~l~~~~-------g~iv~isS~~~~~~~~~~  194 (287)
                      +|++|||||.....+..+.. .+    ++++.+++|+.+++.+++.++|.|.+++       |+||++||..+..+.++.
T Consensus        67 ~d~li~~ag~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~  145 (242)
T 1uay_A           67 LFAVVSAAGVGLAEKILGKE-GPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ  145 (242)
T ss_dssp             EEEEEECCCCCCCCCSBCSS-SBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTC
T ss_pred             ceEEEEcccccCcccccccc-cccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCC
Confidence            99999999987665544432 23    7889999999999999999999997643       399999999998888999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-CCCCCHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-LPVQPTEECAKAIV  272 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~evA~~i~  272 (287)
                      ..|+++|++++.+++.++.|++++ |+|++|+||+++|++......       ...+......+. .++.+|||+|++++
T Consensus       146 ~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~dva~~~~  218 (242)
T 1uay_A          146 AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPE-------KAKASLAAQVPFPPRLGRPEEYAALVL  218 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCH-------HHHHHHHTTCCSSCSCCCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccch-------hHHHHHHhhCCCcccCCCHHHHHHHHH
Confidence            999999999999999999999876 999999999999998653210       001111122222 34568999999999


Q ss_pred             HhhccCCccccCCC
Q 042560          273 NSACRGDRYLTQPS  286 (287)
Q Consensus       273 ~l~~~~~~~itG~~  286 (287)
                      +++++  ++++|+.
T Consensus       219 ~l~~~--~~~~G~~  230 (242)
T 1uay_A          219 HILEN--PMLNGEV  230 (242)
T ss_dssp             HHHHC--TTCCSCE
T ss_pred             HHhcC--CCCCCcE
Confidence            99987  7888875

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=100.00  E-value=1.9e-36  Score=259.82  Aligned_cols=210  Identities=16%  Similarity=0.185  Sum_probs=161.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||++++++|+++|++|++++|+.++++.             . +.+|++|.+++++++++.   .+++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------------~-~~~Dl~~~~~v~~~~~~~---~~~id   64 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------------D-LSTAEGRKQAIADVLAKC---SKGMD   64 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------------C-TTSHHHHHHHHHHHHTTC---TTCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------------c-cccCCCCHHHHHHHHHHh---CCCCC
Confidence            689999999999999999999999999999998765321             1 568999999988887632   27999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC------------------
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW------------------  188 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~------------------  188 (287)
                      ++|||||....        .+.+++.+++|+.+++.++++++|.|++++ |+||++||..+.                  
T Consensus        65 ~lv~~Ag~~~~--------~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~  136 (257)
T 1fjh_A           65 GLVLCAGLGPQ--------TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEE  136 (257)
T ss_dssp             EEEECCCCCTT--------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred             EEEECCCCCCC--------cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccch
Confidence            99999997531        144888999999999999999999998765 899999999887                  


Q ss_pred             ----------CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh-hh
Q 042560          189 ----------LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV-QI  256 (287)
Q Consensus       189 ----------~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~  256 (287)
                                .+.++...|++||++++.+++.++.|+++. |+||+|+||+++|++........     ..++..+. ..
T Consensus       137 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-----~~~~~~~~~~~  211 (257)
T 1fjh_A          137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDP-----RYGESIAKFVP  211 (257)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------CCC
T ss_pred             hhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccch-----hHHHHHHhccc
Confidence                      444577899999999999999999999876 99999999999999876431110     01111111 12


Q ss_pred             cCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          257 SLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       257 ~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +..++.+|||+|++++++++++++++||+.+
T Consensus       212 ~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~  242 (257)
T 1fjh_A          212 PMGRRAEPSEMASVIAFLMSPAASYVHGAQI  242 (257)
T ss_dssp             STTSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccCCCCCHHHHHHHHHHHhCchhcCCcCCEE
Confidence            2334678999999999999999899999853

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=100.00  E-value=3.2e-35  Score=267.04  Aligned_cols=232  Identities=12%  Similarity=-0.004  Sum_probs=183.0

Q ss_pred             CCCCEEEEecCCChHHHH--HHHHHHHcCCeEEEEeCChhH------------HHHHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           45 VAGKVVLITGASSGIGKH--LAYEYARRRARLVLVARRERQ------------LREVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~a--ia~~L~~~G~~vv~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      ..+|+++||||++|||++  +++.|+++|++|++++|+...            .+...+..+..+ .++..+.+|++|.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKG-LVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTT-CCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcC-CcEEEEEeeCCCHH
Confidence            689999999999999999  999999999999999996543            233333444443 46899999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccC-------------CCCCCC--------------------CCCCCCCcccchheh
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVV-------------PMCLFE--------------------DYTDITKPAPAMDIN  157 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~-------------~~~~~~--------------------~~~~~~~~~~~~~~n  157 (287)
                      +++++++++.+++|++|++|||||..             ...++.                    ...+.++|++.+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            99999999999999999999999985             122221                    112446788889999


Q ss_pred             hhhHH-HHHHHHHHH-HhcCCCEEEEEcCCCCCCCCCCC--hhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccC
Q 042560          158 FWGSA-YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRM--SFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIES  231 (287)
Q Consensus       158 ~~~~~-~l~~~~~~~-l~~~~g~iv~isS~~~~~~~~~~--~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t  231 (287)
                      ..+.+ .+++.+++. +.+++|+||++||..+..+.|.+  +.|++||+|+++|+++|+.|+++ . ||||+|+||+++|
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T  296 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVNKALVT  296 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEECCCCCC
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEECCcCcC
Confidence            88887 777777664 44446899999999999988888  99999999999999999999998 7 9999999999999


Q ss_pred             CCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          232 EITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      ++......       .+...........+.++||+|++.+.+|+++  ++.+|+.
T Consensus       297 ~~s~~ip~-------~p~y~~~~~~~mk~~G~~E~v~e~~~~L~sd--~~~~g~~  342 (418)
T 4eue_A          297 KASAYIPT-------FPLYAAILYKVMKEKNIHENCIMQIERMFSE--KIYSNEK  342 (418)
T ss_dssp             HHHHTSTT-------HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH--TTSSSSC
T ss_pred             hhhhcCCC-------CcHHHHHHHHHHhhcCChHHHHHHHHHHhhc--cccCCCc
Confidence            98765321       1111111122233457899999999999988  6667664

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=100.00  E-value=8.2e-34  Score=290.91  Aligned_cols=237  Identities=15%  Similarity=0.155  Sum_probs=190.4

Q ss_pred             ccCCCCCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSG-IGKHLAYEYARRRARLVLV-ARRERQLREVADQAELM---GSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~g-iG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~  113 (287)
                      ..+.++++||+++||||++| ||+++|++|+++|++|+++ +|+.+++++..+++...   .+.++.++.+|++|.++++
T Consensus       667 ~~~~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~  746 (1887)
T 2uv8_A          667 AFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVE  746 (1887)
T ss_dssp             HHTCBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHH
T ss_pred             ccccCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHH
Confidence            34567789999999999998 9999999999999999998 57777777766665322   1357899999999999999


Q ss_pred             HHHHHHHHh-----cC-CccEEEEccccCCCC-CCCCCC-CCCCcccchhehhhhHHHHHHHH--HHHHhcCC-CEEEEE
Q 042560          114 HFVDVTMEH-----FG-RLDHLVTNAGVVPMC-LFEDYT-DITKPAPAMDINFWGSAYGTYFA--IPYLKQTK-GKIIVV  182 (287)
Q Consensus       114 ~~~~~~~~~-----~~-~idvli~nag~~~~~-~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~--~~~l~~~~-g~iv~i  182 (287)
                      ++++++.++     +| ++|++|||||+.... ++.+.. +.++|++++++|+.+++.+++.+  +|.|.+++ |+||++
T Consensus       747 alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnI  826 (1887)
T 2uv8_A          747 ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPM  826 (1887)
T ss_dssp             HHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEE
T ss_pred             HHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEE
Confidence            999999988     66 999999999987665 554432 14789999999999999999988  67777665 899999


Q ss_pred             cCCCCCCCCCCChhhhhhHHHHHHH-HHHHHHHhCCCeEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCC
Q 042560          183 ASAAGWLPPPRMSFYNASKAAKIAL-YETLRVEFGGDIGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLP  260 (287)
Q Consensus       183 sS~~~~~~~~~~~~Y~asKaal~~~-~~~la~e~~~~i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (287)
                      ||..+..+  +...|++||+|+++| ++.++.+++++|+||+|+||+++ |+|....    +    ...+..+. .+. +
T Consensus       827 SS~ag~~g--g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~----~----~~~~~~~~-~pl-r  894 (1887)
T 2uv8_A          827 SPNHGTFG--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN----N----IIAEGIEK-MGV-R  894 (1887)
T ss_dssp             CSCTTCSS--CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C----C----TTHHHHHT-TSC-C
T ss_pred             cChHhccC--CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc----h----hHHHHHHh-cCC-C
Confidence            99999877  678999999999999 99999999877999999999999 8876430    0    01122221 111 3


Q ss_pred             CCCHHHHHHHHHHhhccC-CccccCCCC
Q 042560          261 VQPTEECAKAIVNSACRG-DRYLTQPSW  287 (287)
Q Consensus       261 ~~~p~evA~~i~~l~~~~-~~~itG~~~  287 (287)
                      +.+|||+|+.+++|++++ ++|+||+.+
T Consensus       895 ~~sPEEVA~avlfLaSd~~as~iTGq~I  922 (1887)
T 2uv8_A          895 TFSQKEMAFNLLGLLTPEVVELCQKSPV  922 (1887)
T ss_dssp             CEEHHHHHHHHHGGGSHHHHHHHHHSCE
T ss_pred             CCCHHHHHHHHHHHhCCCccccccCcEE
Confidence            458999999999999998 789999853

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=288.23  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=191.5

Q ss_pred             ccCCCCCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHH
Q 042560           39 TINAEDVAGKVVLITGASSG-IGKHLAYEYARRRARLVLV-ARRERQLREVADQAELM---GSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~g-iG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~  113 (287)
                      ..+.+++++|+++||||++| ||+++|++|+++|++|+++ +|+.+++++..+++...   .+.++.++.+|++|.++++
T Consensus       468 a~~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVe  547 (1688)
T 2pff_A          468 XXXXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVE  547 (1688)
T ss_dssp             SSSCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHH
T ss_pred             cccccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHH
Confidence            34567789999999999998 9999999999999999998 57776666666655322   1347899999999999999


Q ss_pred             HHHHHHHHh-----cC-CccEEEEccccCCCC-CCCCCC-CCCCcccchhehhhhHHHHHHHH--HHHHhcCC-CEEEEE
Q 042560          114 HFVDVTMEH-----FG-RLDHLVTNAGVVPMC-LFEDYT-DITKPAPAMDINFWGSAYGTYFA--IPYLKQTK-GKIIVV  182 (287)
Q Consensus       114 ~~~~~~~~~-----~~-~idvli~nag~~~~~-~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~--~~~l~~~~-g~iv~i  182 (287)
                      ++++++.++     +| ++|++|||||+.... ++.+.. +.++|++++++|+.+++.+++.+  +|.|++++ |+||++
T Consensus       548 aLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnI  627 (1688)
T 2pff_A          548 ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPM  627 (1688)
T ss_dssp             HHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCC
T ss_pred             HHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEE
Confidence            999999988     77 999999999987665 454432 14789999999999999999998  78887665 899999


Q ss_pred             cCCCCCCCCCCChhhhhhHHHHHHH-HHHHHHHhCCCeEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCC
Q 042560          183 ASAAGWLPPPRMSFYNASKAAKIAL-YETLRVEFGGDIGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLP  260 (287)
Q Consensus       183 sS~~~~~~~~~~~~Y~asKaal~~~-~~~la~e~~~~i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (287)
                      ||..+..+  +...|++||+|+++| ++.++.+++++|+||+|+||+++ |+|....    + .   ..+..+. .+ .+
T Consensus       628 SSiAG~~G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~----e-~---~~~~l~~-ip-lR  695 (1688)
T 2pff_A          628 SPNHGTFG--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN----N-I---IAEGIEK-MG-VR  695 (1688)
T ss_dssp             CSCTTTSS--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT----T-T---CSTTTSS-SS-CC
T ss_pred             EChHhccC--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc----h-H---HHHHHHh-CC-CC
Confidence            99999877  678999999999999 78888888767999999999999 7876431    0 0   0011111 11 13


Q ss_pred             CCCHHHHHHHHHHhhccC-CccccCCCC
Q 042560          261 VQPTEECAKAIVNSACRG-DRYLTQPSW  287 (287)
Q Consensus       261 ~~~p~evA~~i~~l~~~~-~~~itG~~~  287 (287)
                      ..+|||+|+.+++|++++ ++++||+.+
T Consensus       696 ~~sPEEVA~aIlFLaSd~sAs~ITGq~I  723 (1688)
T 2pff_A          696 TFSQKEMAFNLLGLLTPEVVELCQKSPV  723 (1688)
T ss_dssp             CCCCCTTHHHHHHHTSTTHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHhCCCccccccCcEE
Confidence            458999999999999998 789999864

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=100.00  E-value=4.8e-33  Score=284.69  Aligned_cols=235  Identities=16%  Similarity=0.165  Sum_probs=188.6

Q ss_pred             cCCCCCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHh-c--CCCeeEEEeecCCCHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSG-IGKHLAYEYARRRARLVLVA-RRERQLREVADQAEL-M--GSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~g-iG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~-~--~~~~~~~~~~D~~~~~~v~~  114 (287)
                      .+.|+++||+++||||++| ||+++|++|+++|++|++++ |+.+.+++..+++.. .  .+.++.++.+|++|.+++++
T Consensus       645 ~~~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~a  724 (1878)
T 2uv9_A          645 RSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEA  724 (1878)
T ss_dssp             HHCBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHH
T ss_pred             ccCCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHH
Confidence            4556789999999999999 99999999999999999995 666666665555522 1  13578999999999999999


Q ss_pred             HHHHHHHh---cC-CccEEEEccccCCCC-CCCCCC-CCCCcccchhehhhhHHHHHHH--HHHHHhcCC-CEEEEEcCC
Q 042560          115 FVDVTMEH---FG-RLDHLVTNAGVVPMC-LFEDYT-DITKPAPAMDINFWGSAYGTYF--AIPYLKQTK-GKIIVVASA  185 (287)
Q Consensus       115 ~~~~~~~~---~~-~idvli~nag~~~~~-~~~~~~-~~~~~~~~~~~n~~~~~~l~~~--~~~~l~~~~-g~iv~isS~  185 (287)
                      +++++.++   +| ++|+||||||+.... ++.+.. +.++|++++++|+.+++.+++.  ++|.|.+++ |+||++||.
T Consensus       725 lv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~  804 (1878)
T 2uv9_A          725 LVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPN  804 (1878)
T ss_dssp             HHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSC
T ss_pred             HHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcch
Confidence            99999998   88 999999999987665 554432 0478999999999999999877  678776655 899999999


Q ss_pred             CCCCCCCCChhhhhhHHHHHHHHHHHHHH-hCCCeEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCCCCC
Q 042560          186 AGWLPPPRMSFYNASKAAKIALYETLRVE-FGGDIGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP  263 (287)
Q Consensus       186 ~~~~~~~~~~~Y~asKaal~~~~~~la~e-~~~~i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (287)
                      .+..+  +...|+++|+|+++|++.++.+ ++++|+||+|+||+++ |+|....        ....+..+. .+. +..+
T Consensus       805 ag~~g--g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~~--------~~~~~~~~~-~pl-r~~s  872 (1878)
T 2uv9_A          805 HGTFG--NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSAN--------NLVAEGVEK-LGV-RTFS  872 (1878)
T ss_dssp             SSSSS--CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSHH--------HHTHHHHHT-TTC-CCBC
T ss_pred             hhccC--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccccc--------hhhHHHHHh-cCC-CCCC
Confidence            99877  4788999999999999876654 7656999999999999 9986420        001111111 111 3458


Q ss_pred             HHHHHHHHHHhhccCC-ccccCCC
Q 042560          264 TEECAKAIVNSACRGD-RYLTQPS  286 (287)
Q Consensus       264 p~evA~~i~~l~~~~~-~~itG~~  286 (287)
                      |+|+|+.+++|+++.+ +|+||+.
T Consensus       873 PeEVA~avlfLaSd~a~s~iTGq~  896 (1878)
T 2uv9_A          873 QQEMAFNLLGLMAPAIVNLCQSDP  896 (1878)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhCCcccccccCcE
Confidence            9999999999999987 8999985

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.98  E-value=1.7e-32  Score=226.84  Aligned_cols=195  Identities=18%  Similarity=0.254  Sum_probs=164.8

Q ss_pred             CC-EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GK-VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k-~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +| +++||||+||||++++++|+ +|++|++++|+.+                  .+.+|++|+++++++++++    ++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~------------------~~~~D~~~~~~~~~~~~~~----~~   58 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------------DVTVDITNIDSIKKMYEQV----GK   58 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS------------------SEECCTTCHHHHHHHHHHH----CC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc------------------ceeeecCCHHHHHHHHHHh----CC
Confidence            44 79999999999999999999 9999999999864                  3679999999999988764    78


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      +|++|||||.....+..+. +.+++++.+++|+.+++.+++.+.|.|++ ++++|++||..+..+.++...|+++|++++
T Consensus        59 ~d~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~  136 (202)
T 3d7l_A           59 VDAIVSATGSATFSPLTEL-TPEKNAVTISSKLGGQINLVLLGIDSLND-KGSFTLTTGIMMEDPIVQGASAAMANGAVT  136 (202)
T ss_dssp             EEEEEECCCCCCCCCGGGC-CHHHHHHHHHTTTHHHHHHHHTTGGGEEE-EEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhC-CHHHHHHHHhhccHHHHHHHHHHHHHhcc-CCEEEEEcchhhcCCCCccHHHHHHHHHHH
Confidence            9999999998765554443 44778899999999999999999998865 489999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCccccC
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~itG  284 (287)
                      .+++.++.|+ +. +++++|+||+++|++...                ....+..+..+|+|+|++++++++   ++++|
T Consensus       137 ~~~~~~~~e~-~~gi~v~~v~pg~v~~~~~~~----------------~~~~~~~~~~~~~dva~~~~~~~~---~~~~G  196 (202)
T 3d7l_A          137 AFAKSAAIEM-PRGIRINTVSPNVLEESWDKL----------------EPFFEGFLPVPAAKVARAFEKSVF---GAQTG  196 (202)
T ss_dssp             HHHHHHTTSC-STTCEEEEEEECCBGGGHHHH----------------GGGSTTCCCBCHHHHHHHHHHHHH---SCCCS
T ss_pred             HHHHHHHHHc-cCCeEEEEEecCccCCchhhh----------------hhhccccCCCCHHHHHHHHHHhhh---ccccC
Confidence            9999999999 55 999999999999986421                011123345679999999999883   56788


Q ss_pred             CC
Q 042560          285 PS  286 (287)
Q Consensus       285 ~~  286 (287)
                      +.
T Consensus       197 ~~  198 (202)
T 3d7l_A          197 ES  198 (202)
T ss_dssp             CE
T ss_pred             ce
Confidence            64

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.98  E-value=7.4e-32  Score=223.67  Aligned_cols=201  Identities=22%  Similarity=0.253  Sum_probs=166.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+||||++++++|+++  +|++++|+.+++++..+++.     . .++.+|++|++++++++++    ++++|
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~-----~-~~~~~D~~~~~~~~~~~~~----~~~id   68 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG-----A-RALPADLADELEAKALLEE----AGPLD   68 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT-----C-EECCCCTTSHHHHHHHHHH----HCSEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc-----C-cEEEeeCCCHHHHHHHHHh----cCCCC
Confidence            57999999999999999999999  99999999888777666542     1 7788999999999999876    68999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      ++|||||.....++.+. +.+++++.+++|+.+++.+++++   .+++.++||++||..+..+.++...|+++|++++.+
T Consensus        69 ~vi~~ag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~---~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~  144 (207)
T 2yut_A           69 LLVHAVGKAGRASVREA-GRDLVEEMLAAHLLTAAFVLKHA---RFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAY  144 (207)
T ss_dssp             EEEECCCCCCCBCSCC----CHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCCCChhhC-CHHHHHHHHHHHhHHHHHHHHHH---HhcCCcEEEEEcChhhccCCCCcchHHHHHHHHHHH
Confidence            99999998766555553 45789999999999999999988   223348999999999988888999999999999999


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      ++.++.++++. +++++++||++.|++....                 ..+..++.+|+|+|++++++++++...
T Consensus       145 ~~~~~~~~~~~gi~v~~v~pg~v~t~~~~~~-----------------~~~~~~~~~~~dva~~~~~~~~~~~~~  202 (207)
T 2yut_A          145 LEAARKELLREGVHLVLVRLPAVATGLWAPL-----------------GGPPKGALSPEEAARKVLEGLFREPVP  202 (207)
T ss_dssp             HHHHHHHHHTTTCEEEEECCCCBCSGGGGGG-----------------TSCCTTCBCHHHHHHHHHHHHC--CCC
T ss_pred             HHHHHHHHhhhCCEEEEEecCcccCCCcccc-----------------CCCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence            99999999877 9999999999999873210                 011234568999999999999876543

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.97  E-value=3.2e-31  Score=248.78  Aligned_cols=221  Identities=17%  Similarity=0.069  Sum_probs=179.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEE-eCCh-------------hHHHHHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLV-ARRE-------------RQLREVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~-~r~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      ++++++||||++|||+++|++|+++|++ ++++ +|+.             +..++..++++..+ .++.++.+|++|.+
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLG-ATATVVTCDLTDAE  328 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHT-CEEEEEECCTTSHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcC-CEEEEEECCCCCHH
Confidence            6899999999999999999999999997 7777 8883             44566667776655 47999999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCC
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGW  188 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~  188 (287)
                      +++++++++. +++++|++|||||+.....+.+. +.+++++++++|+.+++++.+.+.+.++++  .++||++||..+.
T Consensus       329 ~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~-~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          329 AAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAAT-DADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhC-CHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence            9999999988 78999999999999877666554 458899999999999999999999998765  4899999999999


Q ss_pred             CCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHH
Q 042560          189 LPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEEC  267 (287)
Q Consensus       189 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ev  267 (287)
                      .+.+++..|+++|+++++|+    .++..+ +++++|+||+++|+|....         ...+..+.  ...+..+|+|+
T Consensus       407 ~g~~g~~~YaaaKa~l~~lA----~~~~~~gi~v~sI~pG~~~tgm~~~~---------~~~~~~~~--~g~~~l~pee~  471 (525)
T 3qp9_A          407 WGGAGQGAYAAGTAFLDALA----GQHRADGPTVTSVAWSPWEGSRVTEG---------ATGERLRR--LGLRPLAPATA  471 (525)
T ss_dssp             TCCTTCHHHHHHHHHHHHHH----TSCCSSCCEEEEEEECCBTTSGGGSS---------HHHHHHHH--TTBCCBCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH----HHHHhCCCCEEEEECCccccccccch---------hhHHHHHh--cCCCCCCHHHH
Confidence            99999999999999999874    556666 9999999999999987421         01111111  12234579999


Q ss_pred             HHHHHHhhccCCccccC
Q 042560          268 AKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       268 A~~i~~l~~~~~~~itG  284 (287)
                      ++.+.++++.+...++.
T Consensus       472 a~~l~~~l~~~~~~v~v  488 (525)
T 3qp9_A          472 LTALDTALGHGDTAVTI  488 (525)
T ss_dssp             HHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhCCCCeEEE
Confidence            99999999887665543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.97  E-value=2.8e-30  Score=275.91  Aligned_cols=228  Identities=14%  Similarity=0.170  Sum_probs=175.1

Q ss_pred             CCCCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhH-----HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSG-IGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        44 ~~~~k~alVtGa~~g-iG~aia~~L~~~G~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .++||+++||||++| ||+++|+.|+++|++|++++|+.+.     ++++.+++... +.++..+++|++|.++++++++
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~-G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF-DATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT-TCEEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc-CCeEEEEEecCCCHHHHHHHHH
Confidence            489999999999999 9999999999999999999998776     55555555433 3478899999999999999999


Q ss_pred             HHHH----hcCCccEEEEcccc----CCCCCCCCCCCCCCcccc----hhehhhhHHHHHHHHHHHHhcCC-----CEEE
Q 042560          118 VTME----HFGRLDHLVTNAGV----VPMCLFEDYTDITKPAPA----MDINFWGSAYGTYFAIPYLKQTK-----GKII  180 (287)
Q Consensus       118 ~~~~----~~~~idvli~nag~----~~~~~~~~~~~~~~~~~~----~~~n~~~~~~l~~~~~~~l~~~~-----g~iv  180 (287)
                      ++.+    ++|++|+||||||+    ..........+.++|++.    +++|+.+.+.+++.+.+.|.+++     +.++
T Consensus      2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D         2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp             HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence            9998    88999999999998    222222222244667766    89999999999999999997654     1333


Q ss_pred             EEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHH--hCCCeEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhc
Q 042560          181 VVASAAGWLPPPRMSFYNASKAAKIALYETLRVE--FGGDIGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQIS  257 (287)
Q Consensus       181 ~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e--~~~~i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (287)
                      +.++..+.  .++...|++||+|+++|++.++.|  ++++|+||+++||+|+ |++....    +    ...+..+.. .
T Consensus      2292 ~~ss~~g~--~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~----~----~~~~~~~~~-~ 2360 (3089)
T 3zen_D         2292 PGSPNRGM--FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQN----D----AIVSAVEEA-G 2360 (3089)
T ss_dssp             EECSSTTS--CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTT----T----TTHHHHGGG-S
T ss_pred             ECCccccc--CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccc----h----hHHHHHHhc-C
Confidence            44544443  335668999999999999999999  7766999999999999 6654321    0    012222222 1


Q ss_pred             CCCCCCHHHHHHHHHHhhccCCccccC
Q 042560          258 LLPVQPTEECAKAIVNSACRGDRYLTQ  284 (287)
Q Consensus       258 ~~~~~~p~evA~~i~~l~~~~~~~itG  284 (287)
                       .+..+|+|||+.++||+|++++++++
T Consensus      2361 -~r~~~PeEIA~avlfLaS~~a~~~~~ 2386 (3089)
T 3zen_D         2361 -VTTYTTDEMAAMLLDLCTVETKVAAA 2386 (3089)
T ss_dssp             -CBCEEHHHHHHHHHHTTSHHHHHHHH
T ss_pred             -CCCCCHHHHHHHHHHHhChhhhhHhc
Confidence             12337999999999999998877554

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.97  E-value=2e-31  Score=227.61  Aligned_cols=209  Identities=22%  Similarity=0.234  Sum_probs=167.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+||||++++++|+++|++|++++|+.++.+.              .+.+|++|.+++++++++.   .+++|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~D~~~~~~~~~~~~~~---~~~~d   64 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--------------DLSTPGGRETAVAAVLDRC---GGVLD   64 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------------CTTSHHHHHHHHHHHHHHH---TTCCS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--------------cccCCcccHHHHHHHHHHc---CCCcc
Confidence            579999999999999999999999999999998764321              1568999999998888754   36899


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC---------------
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP---------------  191 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~---------------  191 (287)
                      ++|||||....        .+.+++.+++|+.+++.+++++.+.|++.+ +++|++||..+..+.               
T Consensus        65 ~vi~~Ag~~~~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~  136 (255)
T 2dkn_A           65 GLVCCAGVGVT--------AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDE  136 (255)
T ss_dssp             EEEECCCCCTT--------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCH
T ss_pred             EEEECCCCCCc--------chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccch
Confidence            99999997541        245788999999999999999999998764 899999999887654               


Q ss_pred             -----------CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh-cC
Q 042560          192 -----------PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI-SL  258 (287)
Q Consensus       192 -----------~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~  258 (287)
                                 ++...|+++|++++.+++.++.++++. +++++++||.+.|++........     ...+...... +.
T Consensus       137 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~-----~~~~~~~~~~~~~  211 (255)
T 2dkn_A          137 ARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADP-----RYGESTRRFVAPL  211 (255)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCT-----TTHHHHHSCCCTT
T ss_pred             hhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccch-----hhHHHHHHHHHHh
Confidence                       466789999999999999999998766 99999999999999765321110     0111121111 22


Q ss_pred             CCCCCHHHHHHHHHHhhccCCccccCCC
Q 042560          259 LPVQPTEECAKAIVNSACRGDRYLTQPS  286 (287)
Q Consensus       259 ~~~~~p~evA~~i~~l~~~~~~~itG~~  286 (287)
                      .++.+|+|+|+++++++++++++++|+.
T Consensus       212 ~~~~~~~dva~~~~~l~~~~~~~~~G~~  239 (255)
T 2dkn_A          212 GRGSEPREVAEAIAFLLGPQASFIHGSV  239 (255)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTCCSCE
T ss_pred             cCCCCHHHHHHHHHHHhCCCcccceeeE
Confidence            3456799999999999998877888874

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.95  E-value=2.9e-28  Score=226.51  Aligned_cols=216  Identities=20%  Similarity=0.155  Sum_probs=169.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChh---HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRER---QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++||||++|||++++++|+++|+ +|++++|+..   ..+++.++++..+ .++.++.+|++|.++++++++++.++
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g-~~v~~~~~Dvtd~~~v~~~~~~i~~~  317 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLG-VRVTIAACDAADREALAALLAELPED  317 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            49999999999999999999999999 8899999743   3566666676655 47999999999999999999998777


Q ss_pred             cCCccEEEEccccC-CCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVV-PMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       +++|++|||||+. ....+.+ .+.+++++++++|+.+++++.+.+.+.   ..++||++||..+..+.+++..|+++|
T Consensus       318 -g~ld~vVh~AGv~~~~~~l~~-~t~e~~~~vl~~nv~g~~~L~~~~~~~---~~~~iV~~SS~a~~~g~~g~~~YaAaK  392 (496)
T 3mje_A          318 -APLTAVFHSAGVAHDDAPVAD-LTLGQLDALMRAKLTAARHLHELTADL---DLDAFVLFSSGAAVWGSGGQPGYAAAN  392 (496)
T ss_dssp             -SCEEEEEECCCCCCSCCCTTT-CCHHHHHHHHHTTHHHHHHHHHHHTTS---CCSEEEEEEEHHHHTTCTTCHHHHHHH
T ss_pred             -CCCeEEEECCcccCCCCCccc-CCHHHHHHHHHHHHHHHHHHHHHhhcc---CCCEEEEEeChHhcCCCCCcHHHHHHH
Confidence             7999999999998 5554444 355889999999999999988876543   347999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      +++++|++.++..   .+++++|+||++.++.+...   .    ...+.+.+   ......+|++.++.+.+++..+...
T Consensus       393 a~ldala~~~~~~---Gi~v~sV~pG~w~~~gm~~~---~----~~~~~l~~---~g~~~l~pe~~~~~l~~~l~~~~~~  459 (496)
T 3mje_A          393 AYLDALAEHRRSL---GLTASSVAWGTWGEVGMATD---P----EVHDRLVR---QGVLAMEPEHALGALDQMLENDDTA  459 (496)
T ss_dssp             HHHHHHHHHHHHT---TCCCEEEEECEESSSCC-------------CHHHHH---TTEEEECHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHHHhc---CCeEEEEECCcccCCccccC---h----HHHHHHHh---cCCCCCCHHHHHHHHHHHHcCCCce
Confidence            9999998865431   29999999999977644321   0    00111111   1112237999999999999876543

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.95  E-value=7.1e-28  Score=235.92  Aligned_cols=214  Identities=20%  Similarity=0.204  Sum_probs=170.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHH-HcCC-eEEEEeCC---hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYA-RRRA-RLVLVARR---ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~-~~G~-~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ++|+++||||++|||+++|++|+ ++|+ +|++++|+   .+..++..++++..+ .++.++.+|++|.++++++++++.
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G-~~v~~~~~Dvsd~~~v~~~~~~~~  607 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYG-AEVSLQACDVADRETLAKVLASIP  607 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcC-CcEEEEEeecCCHHHHHHHHHHHH
Confidence            68999999999999999999999 7999 59999998   445667777776665 479999999999999999999988


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +++ ++|++|||||+.....+.+. +.++|++.+++|+.+++++.+++.|.|     +||++||..+..+.+++..|+++
T Consensus       608 ~~~-~id~lVnnAGv~~~~~~~~~-t~e~~~~~~~~nv~G~~~l~~~~~~~l-----~iV~~SS~ag~~g~~g~~~YaAa  680 (795)
T 3slk_A          608 DEH-PLTAVVHAAGVLDDGVSESL-TVERLDQVLRPKVDGARNLLELIDPDV-----ALVLFSSVSGVLGSGGQGNYAAA  680 (795)
T ss_dssp             TTS-CEEEEEECCCCCCCCCGGGC-CHHHHHHHHCCCCCHHHHHHHHSCTTS-----EEEEEEETHHHHTCSSCHHHHHH
T ss_pred             HhC-CCEEEEECCCcCCCCchhhC-CHHHHHHHHHHHHHHHHHHHHHHhhCC-----EEEEEccHHhcCCCCCCHHHHHH
Confidence            876 99999999999887766664 558999999999999999999987766     89999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh--cCCCCCCHHHHHHHHHHhhcc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI--SLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~evA~~i~~l~~~  277 (287)
                      |+++++    +++++.++ |++|+|+||+++|++.....         .++..+.+.  ...+ .+++|....+..++..
T Consensus       681 ka~~~a----lA~~~~~~Gi~v~sI~pG~v~t~g~~~~~---------~~~~~~~~~~~g~~~-l~~~e~~~~~~~~l~~  746 (795)
T 3slk_A          681 NSFLDA----LAQQRQSRGLPTRSLAWGPWAEHGMASTL---------REAEQDRLARSGLLP-ISTEEGLSQFDAACGG  746 (795)
T ss_dssp             HHHHHH----HHHHHHHTTCCEEEEEECCCSCCCHHHHH---------HHHHHHHHHHTTBCC-CCHHHHHHHHHHHHTS
T ss_pred             HHHHHH----HHHHHHHcCCeEEEEECCeECcchhhccc---------cHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhC
Confidence            975555    55555555 99999999999998653211         111112111  2223 3577777777777665


Q ss_pred             CCcc
Q 042560          278 GDRY  281 (287)
Q Consensus       278 ~~~~  281 (287)
                      +...
T Consensus       747 ~~~~  750 (795)
T 3slk_A          747 AHTV  750 (795)
T ss_dssp             SCSS
T ss_pred             CCcE
Confidence            5443

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.94  E-value=7.2e-26  Score=211.64  Aligned_cols=213  Identities=22%  Similarity=0.235  Sum_probs=169.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChh---HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRER---QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++++||||+||||++++++|+++|+ +|++++|+..   ..++..++++..+ .++.++.+|++|.++++++++.   
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g-~~v~~~~~Dvtd~~~v~~~~~~---  333 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHG-CEVVHAACDVAERDALAALVTA---  333 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTT-CEEEEEECCSSCHHHHHHHHHH---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHHHHhc---
Confidence            589999999999999999999999999 6999999864   3556666666544 4799999999999999998876   


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                        +++|++|||||+.....+.+. +.+++++++++|+.+++++.+.+.+.  +..++||++||..+..+.+++..|+++|
T Consensus       334 --~~ld~VVh~AGv~~~~~~~~~-~~~~~~~~~~~nv~g~~~L~~~~~~~--~~~~~~V~~SS~a~~~g~~g~~~YaaaK  408 (511)
T 2z5l_A          334 --YPPNAVFHTAGILDDAVIDTL-SPESFETVRGAKVCGAELLHQLTADI--KGLDAFVLFSSVTGTWGNAGQGAYAAAN  408 (511)
T ss_dssp             --SCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHHHHHHHHHHHTSSC--TTCCCEEEEEEGGGTTCCTTBHHHHHHH
T ss_pred             --CCCcEEEECCcccCCcccccC-CHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCEEEEEeCHHhcCCCCCCHHHHHHH
Confidence              689999999999876655553 44788999999999999988875332  1347999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcc-cCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLI-ESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +++++|++.++.   ..+++++|+||++ +|+|....          ..+...  ....+..+|+|+++.+..++..+..
T Consensus       409 a~ld~la~~~~~---~gi~v~sv~pG~~~~tgm~~~~----------~~~~~~--~~g~~~l~~e~~a~~l~~al~~~~~  473 (511)
T 2z5l_A          409 AALDALAERRRA---AGLPATSVAWGLWGGGGMAAGA----------GEESLS--RRGLRAMDPDAAVDALLGAMGRNDV  473 (511)
T ss_dssp             HHHHHHHHHHHT---TTCCCEEEEECCBCSTTCCCCH----------HHHHHH--HHTBCCBCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHH---cCCcEEEEECCcccCCcccccc----------cHHHHH--hcCCCCCCHHHHHHHHHHHHhCCCC
Confidence            999999987542   2399999999999 78776431          011111  1123345799999999999987654


Q ss_pred             cc
Q 042560          281 YL  282 (287)
Q Consensus       281 ~i  282 (287)
                      .+
T Consensus       474 ~v  475 (511)
T 2z5l_A          474 CV  475 (511)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.94  E-value=2.2e-26  Score=214.25  Aligned_cols=213  Identities=20%  Similarity=0.198  Sum_probs=166.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChh---HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRER---QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++++||||+||||++++++|+++|++ |++++|+..   ..++..++++..+ .++.++.+|++|.++++++++++ +
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g-~~v~~~~~Dv~d~~~v~~~~~~i-~  302 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALG-ARTTVAACDVTDRESVRELLGGI-G  302 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHTS-C
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHHHHHHH-H
Confidence            5899999999999999999999999995 999999875   3556666666554 47999999999999999999988 5


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      .++++|++|||||......+.+. +.+++++.+++|+.+++++.+.+.+   ...++||++||..+..+.+++..|+++|
T Consensus       303 ~~g~ld~VIh~AG~~~~~~l~~~-~~~~~~~~~~~nv~g~~~L~~~~~~---~~~~~~V~~SS~a~~~g~~g~~~Yaaak  378 (486)
T 2fr1_A          303 DDVPLSAVFHAAATLDDGTVDTL-TGERIERASRAKVLGARNLHELTRE---LDLTAFVLFSSFASAFGAPGLGGYAPGN  378 (486)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGC-CHHHHHHHTHHHHHHHHHHHHHHTT---SCCSEEEEEEEHHHHTCCTTCTTTHHHH
T ss_pred             hcCCCcEEEECCccCCCCccccC-CHHHHHHHHHHHHHHHHHHHHHhCc---CCCCEEEEEcChHhcCCCCCCHHHHHHH
Confidence            66899999999998876655443 4578899999999999999887643   2348999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCC-CcCCcccCcCCCccchHHHHhhhh-cCCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESE-ITGGKFLNKNGKLEVDQEIRDVQI-SLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++|++.++..   .+++++|+||++.++ |.....             .+.+. ......+|+|+++.+..+++.+.
T Consensus       379 a~l~~la~~~~~~---gi~v~~i~pG~~~~~gm~~~~~-------------~~~~~~~g~~~i~~e~~a~~l~~~l~~~~  442 (486)
T 2fr1_A          379 AYLDGLAQQRRSD---GLPATAVAWGTWAGSGMAEGPV-------------ADRFRRHGVIEMPPETACRALQNALDRAE  442 (486)
T ss_dssp             HHHHHHHHHHHHT---TCCCEEEEECCBC-------------------------CTTTTEECBCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc---CCeEEEEECCeeCCCcccchhH-------------HHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            9999988765432   389999999999886 432110             00010 11123479999999999998654


Q ss_pred             c
Q 042560          280 R  280 (287)
Q Consensus       280 ~  280 (287)
                      .
T Consensus       443 ~  443 (486)
T 2fr1_A          443 V  443 (486)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.93  E-value=1.5e-25  Score=193.22  Aligned_cols=183  Identities=17%  Similarity=0.136  Sum_probs=148.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|+++||||+||||++++++|+++|++|++++|+..+.+          ..++.++.+|++|.++++++++       +
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~-------~   64 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVA-------G   64 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHT-------T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHc-------C
Confidence            5689999999999999999999999999999999875432          2368999999999999988875       6


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC------------CCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW------------LPPPR  193 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~------------~~~~~  193 (287)
                      +|++|||||..         ..+.+++.+++|+.+++.+++++.+   .+.++||++||..+.            .+.+.
T Consensus        65 ~D~vi~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~  132 (267)
T 3rft_A           65 CDGIVHLGGIS---------VEKPFEQILQGNIIGLYNLYEAARA---HGQPRIVFASSNHTIGYYPQTERLGPDVPARP  132 (267)
T ss_dssp             CSEEEECCSCC---------SCCCHHHHHHHHTHHHHHHHHHHHH---TTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCC
T ss_pred             CCEEEECCCCc---------CcCCHHHHHHHHHHHHHHHHHHHHH---cCCCEEEEEcchHHhCCCCCCCCCCCCCCCCC
Confidence            89999999983         2366788999999999999999843   334899999998766            34455


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ...|+.||++.+.+++.++.+++  ++++.|+||.+.++.....             ...      ....++++++.+..
T Consensus       133 ~~~Y~~sK~~~e~~~~~~a~~~g--~~~~~vr~~~v~~~~~~~~-------------~~~------~~~~~~d~a~~~~~  191 (267)
T 3rft_A          133 DGLYGVSKCFGENLARMYFDKFG--QETALVRIGSCTPEPNNYR-------------MLS------TWFSHDDFVSLIEA  191 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECBCSSSCCSTT-------------HHH------HBCCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhC--CeEEEEEeecccCCCCCCC-------------cee------eEEcHHHHHHHHHH
Confidence            68899999999999999999986  7888899998888754321             000      12357899999888


Q ss_pred             hhccC
Q 042560          274 SACRG  278 (287)
Q Consensus       274 l~~~~  278 (287)
                      ++.++
T Consensus       192 ~~~~~  196 (267)
T 3rft_A          192 VFRAP  196 (267)
T ss_dssp             HHHCS
T ss_pred             HHhCC
Confidence            88764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.93  E-value=5e-25  Score=186.29  Aligned_cols=197  Identities=22%  Similarity=0.233  Sum_probs=145.7

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCee-EEEeecCCCHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFA-LAIPADVSKVEDCKHFV  116 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~  116 (287)
                      .+.+..++++++++||||+|+||++++++|+++|++|++++|+.++.++..+.       .+ .++.+|++  +      
T Consensus        12 ~~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-------~~~~~~~~Dl~--~------   76 (236)
T 3e8x_A           12 SGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-------GASDIVVANLE--E------   76 (236)
T ss_dssp             ---------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-------TCSEEEECCTT--S------
T ss_pred             ccccccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-------CCceEEEcccH--H------
Confidence            33456788999999999999999999999999999999999998887654331       47 88999998  2      


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC---CC
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP---PR  193 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~---~~  193 (287)
                       .+.+.++++|++|||||...         .+++++.+++|+.++..+++++..   .+.+++|++||..+..+.   +.
T Consensus        77 -~~~~~~~~~D~vi~~ag~~~---------~~~~~~~~~~n~~~~~~l~~a~~~---~~~~~iv~~SS~~~~~~~~~~~~  143 (236)
T 3e8x_A           77 -DFSHAFASIDAVVFAAGSGP---------HTGADKTILIDLWGAIKTIQEAEK---RGIKRFIMVSSVGTVDPDQGPMN  143 (236)
T ss_dssp             -CCGGGGTTCSEEEECCCCCT---------TSCHHHHHHTTTHHHHHHHHHHHH---HTCCEEEEECCTTCSCGGGSCGG
T ss_pred             -HHHHHHcCCCEEEECCCCCC---------CCCccccchhhHHHHHHHHHHHHH---cCCCEEEEEecCCCCCCCCChhh
Confidence             33444568999999999743         256778999999999999988743   234799999997776554   46


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ...|+.+|++++.+.+    +  ..++++.++||++.++..........           .......+..++|+|+++++
T Consensus       144 ~~~Y~~sK~~~e~~~~----~--~gi~~~~lrpg~v~~~~~~~~~~~~~-----------~~~~~~~~i~~~Dva~~~~~  206 (236)
T 3e8x_A          144 MRHYLVAKRLADDELK----R--SSLDYTIVRPGPLSNEESTGKVTVSP-----------HFSEITRSITRHDVAKVIAE  206 (236)
T ss_dssp             GHHHHHHHHHHHHHHH----H--SSSEEEEEEECSEECSCCCSEEEEES-----------SCSCCCCCEEHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHH----H--CCCCEEEEeCCcccCCCCCCeEEecc-----------CCCcccCcEeHHHHHHHHHH
Confidence            7899999999999876    2  23999999999999986543221100           00112334569999999999


Q ss_pred             hhccCC
Q 042560          274 SACRGD  279 (287)
Q Consensus       274 l~~~~~  279 (287)
                      +++++.
T Consensus       207 ~~~~~~  212 (236)
T 3e8x_A          207 LVDQQH  212 (236)
T ss_dssp             HTTCGG
T ss_pred             HhcCcc
Confidence            998753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.92  E-value=1.5e-23  Score=175.49  Aligned_cols=184  Identities=12%  Similarity=0.040  Sum_probs=139.8

Q ss_pred             CEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYA-RRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~-~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      |+++||||+|+||++++++|+ ++|++|++++|+.+ +++++.    .. ...+..+.+|++|.++++++++       +
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~-~~~~~~~~~D~~d~~~~~~~~~-------~   73 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID-HERVTVIEGSFQNPGXLEQAVT-------N   73 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT-STTEEEEECCTTCHHHHHHHHT-------T
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC-CCceEEEECCCCCHHHHHHHHc-------C
Confidence            789999999999999999999 89999999999987 655443    11 2358899999999999888774       6


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCCh---------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMS---------  195 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~---------  195 (287)
                      +|++|||+|..                    |+.     .+.+++.+++.+ ++||++||..+..+.+...         
T Consensus        74 ~d~vv~~ag~~--------------------n~~-----~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~  128 (221)
T 3r6d_A           74 AEVVFVGAMES--------------------GSD-----MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLP  128 (221)
T ss_dssp             CSEEEESCCCC--------------------HHH-----HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSC
T ss_pred             CCEEEEcCCCC--------------------Chh-----HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccccccc
Confidence            89999999852                    222     788888887765 7999999998877666544         


Q ss_pred             -hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 -FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 -~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                       .|+.+|++++.+.+.      ..++++.|+||++.++..........     .     .........+++|+|+.++++
T Consensus       129 ~~y~~~K~~~e~~~~~------~~i~~~~vrpg~v~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~dvA~~~~~l  192 (221)
T 3r6d_A          129 ISYVQGERQARNVLRE------SNLNYTILRLTWLYNDPEXTDYELIP-----E-----GAQFNDAQVSREAVVKAIFDI  192 (221)
T ss_dssp             HHHHHHHHHHHHHHHH------SCSEEEEEEECEEECCTTCCCCEEEC-----T-----TSCCCCCEEEHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh------CCCCEEEEechhhcCCCCCcceeecc-----C-----CccCCCceeeHHHHHHHHHHH
Confidence             899999999987753      23999999999998873221110000     0     000111134689999999999


Q ss_pred             h--ccCCccccC
Q 042560          275 A--CRGDRYLTQ  284 (287)
Q Consensus       275 ~--~~~~~~itG  284 (287)
                      +  +++++|+++
T Consensus       193 ~~~~~~~~~~~~  204 (221)
T 3r6d_A          193 LHAADETPFHRT  204 (221)
T ss_dssp             HTCSCCGGGTTE
T ss_pred             HHhcChhhhhcc
Confidence            9  888877764

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.91  E-value=1.3e-24  Score=184.27  Aligned_cols=194  Identities=16%  Similarity=0.109  Sum_probs=144.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++|+++||||+||||++++++|+++|+  +|++++|+.++.++...       ..+.++.+|++|.++++++++     
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~-----   83 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY-------KNVNQEVVDFEKLDDYASAFQ-----   83 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGG-------GGCEEEECCGGGGGGGGGGGS-----
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccccc-------CCceEEecCcCCHHHHHHHhc-----
Confidence            5689999999999999999999999999  99999998765432110       247788999999988877653     


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                        ++|++|||||.....        +.+++.+++|+.++..+++++.+   .+.++||++||..+..  +....|+++|+
T Consensus        84 --~~d~vi~~ag~~~~~--------~~~~~~~~~n~~~~~~~~~~~~~---~~~~~iv~~SS~~~~~--~~~~~Y~~sK~  148 (242)
T 2bka_A           84 --GHDVGFCCLGTTRGK--------AGAEGFVRVDRDYVLKSAELAKA---GGCKHFNLLSSKGADK--SSNFLYLQVKG  148 (242)
T ss_dssp             --SCSEEEECCCCCHHH--------HHHHHHHHHHTHHHHHHHHHHHH---TTCCEEEEECCTTCCT--TCSSHHHHHHH
T ss_pred             --CCCEEEECCCccccc--------CCcccceeeeHHHHHHHHHHHHH---CCCCEEEEEccCcCCC--CCcchHHHHHH
Confidence              799999999974321        23466788999998887776532   2237999999987764  34568999999


Q ss_pred             HHHHHHHHHHHHhCCCe-EEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-------CCCCCHHHHHHHHHHh
Q 042560          203 AKIALYETLRVEFGGDI-GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-------LPVQPTEECAKAIVNS  274 (287)
Q Consensus       203 al~~~~~~la~e~~~~i-~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~evA~~i~~l  274 (287)
                      +++.+++.+    +  + ++++|+||++.|++.....         .+...+.....       ..+..|+|+|++++++
T Consensus       149 ~~e~~~~~~----~--~~~~~~vrpg~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~  213 (242)
T 2bka_A          149 EVEAKVEEL----K--FDRYSVFRPGVLLCDRQESRP---------GEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNN  213 (242)
T ss_dssp             HHHHHHHTT----C--CSEEEEEECCEEECTTGGGSH---------HHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHH
T ss_pred             HHHHHHHhc----C--CCCeEEEcCceecCCCCCCcH---------HHHHHHHhhcccCccccCCcccCHHHHHHHHHHH
Confidence            999988754    2  4 7999999999998643210         11112221111       2234699999999999


Q ss_pred             hccCCc
Q 042560          275 ACRGDR  280 (287)
Q Consensus       275 ~~~~~~  280 (287)
                      +++++.
T Consensus       214 ~~~~~~  219 (242)
T 2bka_A          214 VVRPRD  219 (242)
T ss_dssp             HTSCCC
T ss_pred             HhCccc
Confidence            998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.90  E-value=1e-22  Score=180.71  Aligned_cols=213  Identities=14%  Similarity=0.068  Sum_probs=158.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEE-eecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI-PADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+++++++||||+|+||++++++|+++|++|++++|+.+..+...+.+....+.++.++ .+|++|.++++++++    
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~----   82 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK----   82 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT----
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc----
Confidence            456789999999999999999999999999999999998877666555543222357777 799999988776653    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-CCC--------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-PPP--------  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-~~~--------  192 (287)
                         ++|++|||||.....        +++.+.+++|+.++..+++++.+.  .+.+++|++||..... +.+        
T Consensus        83 ---~~d~vih~A~~~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~--~~~~~iv~~SS~~~~~~~~~~~~~~~~~  149 (342)
T 1y1p_A           83 ---GAAGVAHIASVVSFS--------NKYDEVVTPAIGGTLNALRAAAAT--PSVKRFVLTSSTVSALIPKPNVEGIYLD  149 (342)
T ss_dssp             ---TCSEEEECCCCCSCC--------SCHHHHHHHHHHHHHHHHHHHHTC--TTCCEEEEECCGGGTCCCCTTCCCCEEC
T ss_pred             ---CCCEEEEeCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhC--CCCcEEEEeccHHHhcCCCCCCCCcccC
Confidence               689999999975421        345678999999999999987641  2237999999986642 211        


Q ss_pred             ----------------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHH
Q 042560          193 ----------------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE  250 (287)
Q Consensus       193 ----------------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~  250 (287)
                                            ....|+.+|++.+.+++.++.+++..++++.++||.+.++........     .....
T Consensus       150 E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~-----~~~~~  224 (342)
T 1y1p_A          150 EKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQS-----GSTSG  224 (342)
T ss_dssp             TTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCC-----CHHHH
T ss_pred             ccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCC-----ccHHH
Confidence                                  235799999999999999999987669999999999999875431100     01112


Q ss_pred             HHhhhhc-----------CCCCCCHHHHHHHHHHhhcc
Q 042560          251 IRDVQIS-----------LLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       251 ~~~~~~~-----------~~~~~~p~evA~~i~~l~~~  277 (287)
                      +......           ...+..++|+|++++.++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~  262 (342)
T 1y1p_A          225 WMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVL  262 (342)
T ss_dssp             HHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcC
Confidence            2211111           11123599999999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.89  E-value=9.2e-23  Score=181.23  Aligned_cols=175  Identities=15%  Similarity=0.102  Sum_probs=136.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+|+||++++++|+++|++|++++|+.+..++..+.+....+..+.++.+|++|.+++++++++     ++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~   78 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA-----HP   78 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----SC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----cC
Confidence            5689999999999999999999999999999999877655555555443234688999999999999988875     47


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC-----------CCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL-----------PPPR  193 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~-----------~~~~  193 (287)
                      +|++|||||......     ..+...+.++.|+.++..+++.+    ++.+ +++|++||.....           +...
T Consensus        79 ~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~  149 (341)
T 3enk_A           79 ITAAIHFAALKAVGE-----SVAKPIEYYRNNLDSLLSLLRVM----RERAVKRIVFSSSATVYGVPERSPIDETFPLSA  149 (341)
T ss_dssp             CCEEEECCCCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHH----HHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBC
T ss_pred             CcEEEECccccccCc-----cccChHHHHHHHHHHHHHHHHHH----HhCCCCEEEEEecceEecCCCCCCCCCCCCCCC
Confidence            999999999864322     11334567888998888776654    3334 7999999965431           2223


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      ...|+.+|++.+.+++.++.+++ .++++.++||.+..+...
T Consensus       150 ~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~lRp~~v~G~~~~  190 (341)
T 3enk_A          150 TNPYGQTKLMAEQILRDVEAADP-SWRVATLRYFNPVGAHES  190 (341)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHCT-TCEEEEEEECEEECCCTT
T ss_pred             CChhHHHHHHHHHHHHHHhhcCC-CceEEEEeeccccCCccc
Confidence            46899999999999999999875 378999999999887543

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.89  E-value=9.9e-23  Score=180.69  Aligned_cols=193  Identities=15%  Similarity=0.011  Sum_probs=148.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCChhH------------HHHHHHHHHhcCCCeeEEEeecCCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYA-RRRARLVLVARRERQ------------LREVADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~-~~G~~vv~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      .....+|++|||||++|||+|++..|+ +.|+.++++++..+.            .....++++..+. +...+.+|++|
T Consensus        45 ~~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~-~a~~i~~Dv~d  123 (401)
T 4ggo_A           45 AGAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGL-YSVTIDGDAFS  123 (401)
T ss_dssp             TTSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTC-CEEEEESCTTS
T ss_pred             cccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCC-CceeEeCCCCC
Confidence            345678999999999999999999999 689999999875432            2344455666654 69999999999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCC--------------------CCCC----------------Cccc
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDY--------------------TDIT----------------KPAP  152 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~--------------------~~~~----------------~~~~  152 (287)
                      .++++++++++.+++|++|+||||++......+...                    .+.+                ....
T Consensus       124 ~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~  203 (401)
T 4ggo_A          124 DEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVK  203 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHH
Confidence            999999999999999999999999998743221100                    0001                1112


Q ss_pred             chhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC--CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCccc
Q 042560          153 AMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP--RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIE  230 (287)
Q Consensus       153 ~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~--~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~  230 (287)
                      .|....++.|...+...+.|.+ +++++.+|+..+....|  +.+.++++|++|+..++.|+.++++ +++|++.||.+.
T Consensus       204 vMg~s~~s~w~~al~~a~lla~-G~siva~SYiGse~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~-~~a~v~v~~a~v  281 (401)
T 4ggo_A          204 VMGGEDWERWIKQLSKEGLLEE-GCITLAYSYIGPEATQALYRKGTIGKAKEHLEATAHRLNKENPS-IRAFVSVNKGLV  281 (401)
T ss_dssp             HHSSHHHHHHHHHHHHTTCEEE-EEEEEEEECCCCGGGHHHHTTSHHHHHHHHHHHHHHHHHHHCTT-EEEEEEECCCCC
T ss_pred             HHhhhHHHHHHHHHHhhhcccC-CceEEEEeccCcceeecCCCccHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEcCccc
Confidence            3444555666666666666654 68999999998876555  4468999999999999999999976 899999999999


Q ss_pred             CCCcCCc
Q 042560          231 SEITGGK  237 (287)
Q Consensus       231 t~~~~~~  237 (287)
                      |.-....
T Consensus       282 T~AssaI  288 (401)
T 4ggo_A          282 TRASAVI  288 (401)
T ss_dssp             CTTGGGS
T ss_pred             cchhhcC
Confidence            9876543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.88  E-value=3.9e-22  Score=178.02  Aligned_cols=204  Identities=16%  Similarity=0.187  Sum_probs=157.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARR-RA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~-G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++|+++||||+|+||++++++|+++ |+ +|++++|+..+.++..+.+.   ..++.++.+|++|.+++.++++   
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~---   90 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN---DPRMRFFIGDVRDLERLNYALE---   90 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC---CTTEEEEECCTTCHHHHHHHTT---
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc---CCCEEEEECCCCCHHHHHHHHh---
Confidence            3467999999999999999999999999 98 99999999887776655543   2358899999999998877764   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                          ++|++||+||......     ....+.+.+++|+.++..+++++.+.   +.+++|++||..+..|   ...|+++
T Consensus        91 ----~~D~Vih~Aa~~~~~~-----~~~~~~~~~~~Nv~gt~~l~~aa~~~---~v~~~V~~SS~~~~~p---~~~Y~~s  155 (344)
T 2gn4_A           91 ----GVDICIHAAALKHVPI-----AEYNPLECIKTNIMGASNVINACLKN---AISQVIALSTDKAANP---INLYGAT  155 (344)
T ss_dssp             ----TCSEEEECCCCCCHHH-----HHHSHHHHHHHHHHHHHHHHHHHHHT---TCSEEEEECCGGGSSC---CSHHHHH
T ss_pred             ----cCCEEEECCCCCCCCc-----hhcCHHHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCCccCCC---ccHHHHH
Confidence                6899999999754211     11234578999999999999998763   2479999999877654   5689999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc------------CCCCCCHHHH
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS------------LLPVQPTEEC  267 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~p~ev  267 (287)
                      |++.+.+++.++.++++. +++++++||.+.++...-           .+.+.+....            ..++..++|+
T Consensus       156 K~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~-----------i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~  224 (344)
T 2gn4_A          156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSV-----------VPFFKKLVQNKASEIPITDIRMTRFWITLDEG  224 (344)
T ss_dssp             HHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTSH-----------HHHHHHHHHHTCCCEEESCTTCEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCCH-----------HHHHHHHHHcCCCceEEeCCCeEEeeEEHHHH
Confidence            999999999999988766 999999999999875210           0111111100            0112368999


Q ss_pred             HHHHHHhhccC
Q 042560          268 AKAIVNSACRG  278 (287)
Q Consensus       268 A~~i~~l~~~~  278 (287)
                      |++++.++.+.
T Consensus       225 a~~v~~~l~~~  235 (344)
T 2gn4_A          225 VSFVLKSLKRM  235 (344)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhc
Confidence            99999999764

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.88  E-value=4.7e-22  Score=176.85  Aligned_cols=172  Identities=18%  Similarity=0.128  Sum_probs=135.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++++||||+|+||++++++|+++|++|++++|+. ...++..+.+...  .++.++.+|++|.++++++++..     ++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~Dl~d~~~~~~~~~~~-----~~   74 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL--GNFEFVHGDIRNKNDVTRLITKY-----MP   74 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccC--CceEEEEcCCCCHHHHHHHHhcc-----CC
Confidence            4799999999999999999999999999999853 2222233334332  25888999999999998888752     69


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------------  189 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------------  189 (287)
                      |++||+||.....     .+.+++++.+++|+.++..+++++.+...  ++++|++||.....                 
T Consensus        75 d~vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~  147 (347)
T 1orr_A           75 DSCFHLAGQVAMT-----TSIDNPCMDFEINVGGTLNLLEAVRQYNS--NCNIIYSSTNKVYGDLEQYKYNETETRYTCV  147 (347)
T ss_dssp             SEEEECCCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEEGGGGTTCTTSCEEECSSCEEET
T ss_pred             CEEEECCcccChh-----hhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CceEEEeccHHHhCCCCcCCccccccccccc
Confidence            9999999974321     11245677899999999999999987643  36999999975321                 


Q ss_pred             ----------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          190 ----------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       190 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                                +.+....|+.+|++.+.+++.++.+++  ++++.++||.+.++...
T Consensus       148 ~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilrp~~v~g~~~~  201 (347)
T 1orr_A          148 DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG--LNTVVFRHSSMYGGRQF  201 (347)
T ss_dssp             TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECTTCC
T ss_pred             ccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEccCceeCcCCC
Confidence                      223567899999999999999999875  89999999999998653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.88  E-value=5.8e-22  Score=176.00  Aligned_cols=215  Identities=14%  Similarity=0.017  Sum_probs=152.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |++++++||||+|+||++++++|+++|++|++++|+.+..+.  +.+... ...++.++.+|++|.+++.++++.+    
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----   74 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKV----   74 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhc----
Confidence            367899999999999999999999999999999998764321  111211 1235888999999999999888765    


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----------CCCC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----------LPPP  192 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----------~~~~  192 (287)
                       ++|++|||||.....     .+.+++++.+++|+.++..+++++.+. . .++++|++||....           .+.+
T Consensus        75 -~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~-~~~~iv~~SS~~vyg~~~~~~~~e~~~~~  146 (345)
T 2z1m_A           75 -QPDEVYNLAAQSFVG-----VSFEQPILTAEVDAIGVLRILEALRTV-K-PDTKFYQASTSEMFGKVQEIPQTEKTPFY  146 (345)
T ss_dssp             -CCSEEEECCCCCCHH-----HHTTSHHHHHHHHTHHHHHHHHHHHHH-C-TTCEEEEEEEGGGGCSCSSSSBCTTSCCC
T ss_pred             -CCCEEEECCCCcchh-----hhhhCHHHHHHHHHHHHHHHHHHHHHh-C-CCceEEEEechhhcCCCCCCCCCccCCCC
Confidence             689999999975321     123667889999999999999998752 2 13799999997432           2344


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhC---CC-eEEEEEeCCcccCCCcCCcc-------cCcCCCccchHHHHhhhhcCCCC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFG---GD-IGITIVTPGLIESEITGGKF-------LNKNGKLEVDQEIRDVQISLLPV  261 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~---~~-i~v~~i~PG~v~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  261 (287)
                      ....|+.+|++.+.+++.++.+++   .. +.++.+.||...|.+.....       ........     .........+
T Consensus       147 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  221 (345)
T 2z1m_A          147 PRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLV-----LGNLNAKRDW  221 (345)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEE-----ESCTTCEECC
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeee-----eCCCCceeee
Confidence            567899999999999999999986   22 56677889988776532100       00000000     0000001123


Q ss_pred             CCHHHHHHHHHHhhccC
Q 042560          262 QPTEECAKAIVNSACRG  278 (287)
Q Consensus       262 ~~p~evA~~i~~l~~~~  278 (287)
                      ..++|+|++++++++++
T Consensus       222 ~~v~Dva~a~~~~~~~~  238 (345)
T 2z1m_A          222 GYAPEYVEAMWLMMQQP  238 (345)
T ss_dssp             EEHHHHHHHHHHHHTSS
T ss_pred             EEHHHHHHHHHHHHhCC
Confidence            45999999999999864

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.88  E-value=3.4e-22  Score=176.08  Aligned_cols=201  Identities=16%  Similarity=0.104  Sum_probs=151.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+.++++||||+|+||++++++|+++|++|++++|+... +.    +      ++.++.+|++|.++++++++.     +
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l------~~~~~~~Dl~d~~~~~~~~~~-----~   73 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P------NVEMISLDIMDSQRVKKVISD-----I   73 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T------TEEEEECCTTCHHHHHHHHHH-----H
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c------eeeEEECCCCCHHHHHHHHHh-----c
Confidence            367899999999999999999999999999999998764 21    1      478889999999999888765     3


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-------------C
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-------------P  191 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-------------~  191 (287)
                      ++|++||+||.....     .+.+++++.+++|+.++..+++++ +.+. +.+++|++||.....+             .
T Consensus        74 ~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~-~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~  146 (321)
T 2pk3_A           74 KPDYIFHLAAKSSVK-----DSWLNKKGTFSTNVFGTLHVLDAV-RDSN-LDCRILTIGSSEEYGMILPEESPVSEENQL  146 (321)
T ss_dssp             CCSEEEECCSCCCHH-----HHTTCHHHHHHHHHHHHHHHHHHH-HHHT-CCCEEEEEEEGGGTBSCCGGGCSBCTTSCC
T ss_pred             CCCEEEEcCcccchh-----hhhhcHHHHHHHHHHHHHHHHHHH-HHhC-CCCeEEEEccHHhcCCCCCCCCCCCCCCCC
Confidence            799999999975431     123567889999999999999998 5552 3579999999864322             2


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc--------------
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS--------------  257 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  257 (287)
                      +....|+.+|++.+.+++.++.+++  ++++.+.||.+.++......        ....+.+....              
T Consensus       147 ~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilrp~~v~g~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~  216 (321)
T 2pk3_A          147 RPMSPYGVSKASVGMLARQYVKAYG--MDIIHTRTFNHIGPGQSLGF--------VTQDFAKQIVDIEMEKQEPIIKVGN  216 (321)
T ss_dssp             BCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECTTCCTTS--------HHHHHHHHHHHHHTTSSCSEEEESC
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHcC--CCEEEEEeCcccCcCCCCCc--------hHHHHHHHHHHHhcCCCCCeEEeCC
Confidence            4567899999999999999998875  89999999999998654210        01111111100              


Q ss_pred             ---CCCCCCHHHHHHHHHHhhccC
Q 042560          258 ---LLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       258 ---~~~~~~p~evA~~i~~l~~~~  278 (287)
                         ...+..++|+|++++++++++
T Consensus       217 ~~~~~~~v~v~Dva~a~~~~~~~~  240 (321)
T 2pk3_A          217 LEAVRDFTDVRDIVQAYWLLSQYG  240 (321)
T ss_dssp             SSCEEEEEEHHHHHHHHHHHHHHC
T ss_pred             CCcEEeeEEHHHHHHHHHHHHhCC
Confidence               011225999999999999764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.88  E-value=2.5e-21  Score=164.43  Aligned_cols=203  Identities=16%  Similarity=0.093  Sum_probs=144.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++++||||+|+||++++++|+++  |++|++++|+.++.++.        ..++.++.+|++|.++++++++     
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~-----   68 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--------GGEADVFIGDITDADSINPAFQ-----   68 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--------TCCTTEEECCTTSHHHHHHHHT-----
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--------CCCeeEEEecCCCHHHHHHHHc-----
Confidence            46789999999999999999999999  89999999998765432        1347788999999999888764     


Q ss_pred             cCCccEEEEccccCCCCCC------C--CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          123 FGRLDHLVTNAGVVPMCLF------E--DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~------~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                        ++|++|||+|.......      .  .....+.+.+.+++|+.+...+++++.+.   +.+++|++||..+..+.+..
T Consensus        69 --~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~iv~~SS~~~~~~~~~~  143 (253)
T 1xq6_A           69 --GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA---GVKHIVVVGSMGGTNPDHPL  143 (253)
T ss_dssp             --TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH---TCSEEEEEEETTTTCTTCGG
T ss_pred             --CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc---CCCEEEEEcCccCCCCCCcc
Confidence              58999999997643211      0  11123445567899999998888876542   34799999998876544433


Q ss_pred             hh-----hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          195 SF-----YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       195 ~~-----Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      ..     |+.+|++++.+++.      ..++++.++||.+.++.........    .......   ....++..++|+|+
T Consensus       144 ~~~~~~~y~~sK~~~e~~~~~------~~i~~~~vrpg~v~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~Dva~  210 (253)
T 1xq6_A          144 NKLGNGNILVWKRKAEQYLAD------SGTPYTIIRAGGLLDKEGGVRELLV----GKDDELL---QTDTKTVPRADVAE  210 (253)
T ss_dssp             GGGGGCCHHHHHHHHHHHHHT------SSSCEEEEEECEEECSCSSSSCEEE----ESTTGGG---GSSCCEEEHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHh------CCCceEEEecceeecCCcchhhhhc----cCCcCCc---CCCCcEEcHHHHHH
Confidence            33     55699999988753      2399999999999998643110000    0000111   11233457999999


Q ss_pred             HHHHhhccC
Q 042560          270 AIVNSACRG  278 (287)
Q Consensus       270 ~i~~l~~~~  278 (287)
                      +++++++++
T Consensus       211 ~~~~~~~~~  219 (253)
T 1xq6_A          211 VCIQALLFE  219 (253)
T ss_dssp             HHHHHTTCG
T ss_pred             HHHHHHcCc
Confidence            999999864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.87  E-value=1.7e-21  Score=164.75  Aligned_cols=182  Identities=18%  Similarity=0.143  Sum_probs=125.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .+.+..|+++||||+|+||++++++|+++| ++|++++|+.+++++.       ....+.++.+|++|.++++++++   
T Consensus        18 ~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~---   87 (236)
T 3qvo_A           18 YFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-------YPTNSQIIMGDVLNHAALKQAMQ---   87 (236)
T ss_dssp             ----CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-------CCTTEEEEECCTTCHHHHHHHHT---
T ss_pred             eecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-------ccCCcEEEEecCCCHHHHHHHhc---
Confidence            334456899999999999999999999999 8999999998765431       12358899999999999888775   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCC-----
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRM-----  194 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~-----  194 (287)
                          ++|++|||+|..         +              ....++.+++.+++.+ ++||++||.....+.++.     
T Consensus        88 ----~~D~vv~~a~~~---------~--------------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~  140 (236)
T 3qvo_A           88 ----GQDIVYANLTGE---------D--------------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWN  140 (236)
T ss_dssp             ----TCSEEEEECCST---------T--------------HHHHHHHHHHHHHHTTCCEEEEECCCCC------------
T ss_pred             ----CCCEEEEcCCCC---------c--------------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccch
Confidence                679999999841         1              1134667888887765 899999998876554432     


Q ss_pred             --------hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHH
Q 042560          195 --------SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTE  265 (287)
Q Consensus       195 --------~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  265 (287)
                              ..|..+|..           +.+. ++++.|+||++.++..........           ......++.+|+
T Consensus       141 ~~~~~~~~~~~~~~~~~-----------l~~~gi~~~~vrPg~i~~~~~~~~~~~~~-----------~~~~~~~~i~~~  198 (236)
T 3qvo_A          141 NAVIGEPLKPFRRAADA-----------IEASGLEYTILRPAWLTDEDIIDYELTSR-----------NEPFKGTIVSRK  198 (236)
T ss_dssp             ----CGGGHHHHHHHHH-----------HHTSCSEEEEEEECEEECCSCCCCEEECT-----------TSCCSCSEEEHH
T ss_pred             hhcccchHHHHHHHHHH-----------HHHCCCCEEEEeCCcccCCCCcceEEecc-----------CCCCCCcEECHH
Confidence                    223333222           2244 999999999999875432110000           000112345799


Q ss_pred             HHHHHHHHhhccCCccc
Q 042560          266 ECAKAIVNSACRGDRYL  282 (287)
Q Consensus       266 evA~~i~~l~~~~~~~i  282 (287)
                      |||++++++++++++++
T Consensus       199 DvA~~i~~ll~~~~~~~  215 (236)
T 3qvo_A          199 SVAALITDIIDKPEKHI  215 (236)
T ss_dssp             HHHHHHHHHHHSTTTTT
T ss_pred             HHHHHHHHHHcCccccc
Confidence            99999999999987666

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.87  E-value=6.4e-22  Score=212.25  Aligned_cols=177  Identities=18%  Similarity=0.137  Sum_probs=137.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHH---HHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQL---REVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++|+++||||++|||+++|+.|+++|++ |++++|+..+.   ++..++++..+ .++..+.+|++|.++++++++++.+
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g-~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQG-VQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTT-CEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCC-CEEEEEecCCCCHHHHHHHHHHHHh
Confidence            6899999999999999999999999997 88889985443   34444554443 4789999999999999999999874


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                       ++++|++|||||+.....+.+. +.++|++.+++|+.+++++.+.+.+.|.+ .|+||++||..+..+.+++..|+++|
T Consensus      1962 -~g~id~lVnnAgv~~~~~~~~~-t~e~~~~~~~~nv~g~~~l~~~~~~~~~~-~g~iV~iSS~ag~~g~~g~~~Y~aaK 2038 (2512)
T 2vz8_A         1962 -LGPVGGVFNLAMVLRDAVLENQ-TPEFFQDVSKPKYSGTANLDRVTREACPE-LDYFVIFSSVSCGRGNAGQANYGFAN 2038 (2512)
T ss_dssp             -HSCEEEEEECCCC-----------------CTTTTHHHHHHHHHHHHHHCTT-CCEEEEECCHHHHTTCTTCHHHHHHH
T ss_pred             -cCCCcEEEECCCcCCCCchhhC-CHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCEEEEecchhhcCCCCCcHHHHHHH
Confidence             7999999999998876666664 55899999999999999999999998865 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLI  229 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v  229 (287)
                      +++++|++..+.+-   ....++..|.+
T Consensus      2039 aal~~l~~~rr~~G---l~~~a~~~g~~ 2063 (2512)
T 2vz8_A         2039 SAMERICEKRRHDG---LPGLAVQWGAI 2063 (2512)
T ss_dssp             HHHHHHHHHHHHTT---SCCCEEEECCB
T ss_pred             HHHHHHHHHHHHCC---CcEEEEEccCc
Confidence            99999999877662   34445555544

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.87  E-value=5.5e-23  Score=182.30  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=146.4

Q ss_pred             hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           37 IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        37 ~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      ....+..++++++++||||+|+||++++++|+++|++|++++|+.....+..+.+     .++.++.+|++|.+++++++
T Consensus        10 ~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~~~~~~   84 (330)
T 2pzm_A           10 HSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-----AGLSVIEGSVTDAGLLERAF   84 (330)
T ss_dssp             ----CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC-----TTEEEEECCTTCHHHHHHHH
T ss_pred             cccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc-----CCceEEEeeCCCHHHHHHHH
Confidence            4556778889999999999999999999999999999999999754322111111     25888999999999999888


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-----  191 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-----  191 (287)
                      +++     ++|++|||||.....      +.++++  +++|+.++..+++++..   .+.+++|++||.....+.     
T Consensus        85 ~~~-----~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~---~~~~~iV~~SS~~~~~~~~~~~~  148 (330)
T 2pzm_A           85 DSF-----KPTHVVHSAAAYKDP------DDWAED--AATNVQGSINVAKAASK---AGVKRLLNFQTALCYGRPATVPI  148 (330)
T ss_dssp             HHH-----CCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHH---HTCSEEEEEEEGGGGCSCSSSSB
T ss_pred             hhc-----CCCEEEECCccCCCc------cccChh--HHHHHHHHHHHHHHHHH---cCCCEEEEecCHHHhCCCccCCC
Confidence            765     799999999976432      113444  89999999999998864   234799999998664332     


Q ss_pred             C------CChhhhhhHHHHHHHHHHHHHHhCCC-eE-EEEEeCCcccCCCcCCcccCcCCCccchHHHHhh--hhc---C
Q 042560          192 P------RMSFYNASKAAKIALYETLRVEFGGD-IG-ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QIS---L  258 (287)
Q Consensus       192 ~------~~~~Y~asKaal~~~~~~la~e~~~~-i~-v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~---~  258 (287)
                      +      ....|+.+|++++.+++.+  ++... +| ++.+.||. .+++...+.          ....+.  ...   .
T Consensus       149 ~~~E~~~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~-~~~~~~~~~----------~~~~~~~~~~~~~~~  215 (330)
T 2pzm_A          149 PIDSPTAPFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRL-AIGPIPTFY----------KRLKAGQKCFCSDTV  215 (330)
T ss_dssp             CTTCCCCCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTC-CSSHHHHHH----------HHHHTTCCCCEESCE
T ss_pred             CcCCCCCCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCC-CCCHHHHHH----------HHHHcCCEEeCCCCE
Confidence            2      5678999999999999887  44333 66 66777775 333321110          000000  000   1


Q ss_pred             CCCCCHHHHHH-HHHHhhccC
Q 042560          259 LPVQPTEECAK-AIVNSACRG  278 (287)
Q Consensus       259 ~~~~~p~evA~-~i~~l~~~~  278 (287)
                      ..+..++|+|+ +++++++++
T Consensus       216 ~~~i~~~Dva~~a~~~~~~~~  236 (330)
T 2pzm_A          216 RDFLDMSDFLAIADLSLQEGR  236 (330)
T ss_dssp             ECEEEHHHHHHHHHHHTSTTC
T ss_pred             ecceeHHHHHHHHHHHHhhcC
Confidence            22346999999 999999864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.87  E-value=2.2e-21  Score=162.01  Aligned_cols=180  Identities=16%  Similarity=0.192  Sum_probs=141.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~~~id  127 (287)
                      +++||||+|+||++++++|+++|++|++++|+.++.++.         .++.++.+|++| .++++++++       ++|
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~~-------~~d   65 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---------NNVKAVHFDVDWTPEEMAKQLH-------GMD   65 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---------TTEEEEECCTTSCHHHHHTTTT-------TCS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---------CCceEEEecccCCHHHHHHHHc-------CCC
Confidence            599999999999999999999999999999998764432         358899999999 888877653       699


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC-------Chhhhhh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR-------MSFYNAS  200 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~-------~~~Y~as  200 (287)
                      ++|||+|...             .+.+++|+.+...+++++..   .+.+++|++||..+..+.+.       ...|+.+
T Consensus        66 ~vi~~ag~~~-------------~~~~~~n~~~~~~l~~a~~~---~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~s  129 (219)
T 3dqp_A           66 AIINVSGSGG-------------KSLLKVDLYGAVKLMQAAEK---AEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIA  129 (219)
T ss_dssp             EEEECCCCTT-------------SSCCCCCCHHHHHHHHHHHH---TTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHHH
T ss_pred             EEEECCcCCC-------------CCcEeEeHHHHHHHHHHHHH---hCCCEEEEECcccccCCCcccccccccccHHHHH
Confidence            9999999753             12678899998888887632   22379999999888766655       7789999


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          201 KAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      |++.+.+.+   .  ...++++.++||.+.++........              ......+..++|+|++++++++++.
T Consensus       130 K~~~e~~~~---~--~~~i~~~ilrp~~v~g~~~~~~~~~--------------~~~~~~~i~~~Dva~~i~~~l~~~~  189 (219)
T 3dqp_A          130 KHFADLYLT---K--ETNLDYTIIQPGALTEEEATGLIDI--------------NDEVSASNTIGDVADTIKELVMTDH  189 (219)
T ss_dssp             HHHHHHHHH---H--SCCCEEEEEEECSEECSCCCSEEEE--------------SSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHH---h--ccCCcEEEEeCceEecCCCCCcccc--------------CCCcCCcccHHHHHHHHHHHHhCcc
Confidence            999999887   2  2239999999999998754332110              0123334569999999999998753

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.86  E-value=2.5e-21  Score=171.65  Aligned_cols=206  Identities=16%  Similarity=0.073  Sum_probs=149.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChh--HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRER--QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++++||||+|+||++++++|+++|  ++|++++|+..  ..+.. +.+.  ...++.++.+|++|.+++++++     
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~-----   73 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE--DDPRYTFVKGDVADYELVKELV-----   73 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT--TCTTEEEEECCTTCHHHHHHHH-----
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc--cCCceEEEEcCCCCHHHHHHHh-----
Confidence            45679999999999999999999997  89999998642  11111 1111  1235888999999999988877     


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC--C---------C
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW--L---------P  190 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~--~---------~  190 (287)
                        +++|++||+||.....     .+.+++++.+++|+.++..+++++.+.  +..+++|++||....  .         +
T Consensus        74 --~~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~~~~--~~~~~iv~~SS~~vyg~~~~~~~~E~~~  144 (336)
T 2hun_A           74 --RKVDGVVHLAAESHVD-----RSISSPEIFLHSNVIGTYTLLESIRRE--NPEVRFVHVSTDEVYGDILKGSFTENDR  144 (336)
T ss_dssp             --HTCSEEEECCCCCCHH-----HHHHCTHHHHHHHHHHHHHHHHHHHHH--CTTSEEEEEEEGGGGCCCSSSCBCTTBC
T ss_pred             --hCCCEEEECCCCcChh-----hhhhCHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEEeccHHHHCCCCCCCcCCCCC
Confidence              3789999999975421     112456778999999999999999876  224799999996532  1         3


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC------------
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL------------  258 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  258 (287)
                      .+....|+.+|++.+.+++.++.+++  ++++.++||.+.++.....        .....+.+.....            
T Consensus       145 ~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~ilrp~~v~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  214 (336)
T 2hun_A          145 LMPSSPYSATKAASDMLVLGWTRTYN--LNASITRCTNNYGPYQFPE--------KLIPKTIIRASLGLKIPIYGTGKNV  214 (336)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHTT--CEEEEEEECEEESTTCCTT--------SHHHHHHHHHHTTCCEEEETC---C
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHhC--CCEEEEeeeeeeCcCCCcC--------chHHHHHHHHHcCCCceEeCCCCce
Confidence            34567899999999999999998875  8999999999999864310        0011222211111            


Q ss_pred             CCCCCHHHHHHHHHHhhccC
Q 042560          259 LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 ~~~~~p~evA~~i~~l~~~~  278 (287)
                      ..+..++|+|+++++++++.
T Consensus       215 ~~~i~v~Dva~~~~~~~~~~  234 (336)
T 2hun_A          215 RDWLYVEDHVRAIELVLLKG  234 (336)
T ss_dssp             EEEEEHHHHHHHHHHHHHHC
T ss_pred             eeeEEHHHHHHHHHHHHhCC
Confidence            11224899999999999754

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.86  E-value=1.9e-21  Score=172.66  Aligned_cols=217  Identities=12%  Similarity=0.024  Sum_probs=146.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      |.+++|+++||||+|+||++++++|+++|++|+++.|+.+..++.... ....  ..++.++.+|++|.++++++++   
T Consensus         1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (337)
T 2c29_D            1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHL-LDLPKAETHLTLWKADLADEGSFDEAIK---   76 (337)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHH-HTSTTHHHHEEEEECCTTSTTTTHHHHT---
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHH-HhcccCCCeEEEEEcCCCCHHHHHHHHc---
Confidence            345789999999999999999999999999999999987644332221 1111  1247888999999998877764   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC--------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP--------  192 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~--------  192 (287)
                          .+|++||+|+....      ...+..++.+++|+.++..+++++.+..  ..+++|++||..+.++.+        
T Consensus        77 ----~~d~Vih~A~~~~~------~~~~~~~~~~~~nv~gt~~ll~a~~~~~--~~~riV~~SS~~~~~~~~~~~~~~~E  144 (337)
T 2c29_D           77 ----GCTGVFHVATPMDF------ESKDPENEVIKPTIEGMLGIMKSCAAAK--TVRRLVFTSSAGTVNIQEHQLPVYDE  144 (337)
T ss_dssp             ----TCSEEEECCCCCCS------SCSSHHHHTHHHHHHHHHHHHHHHHHHS--CCCEEEEECCGGGTSCSSSCCSEECT
T ss_pred             ----CCCEEEEeccccCC------CCCChHHHHHHHHHHHHHHHHHHHHhCC--CccEEEEeeeHhhcccCCCCCcccCc
Confidence                57999999985411      1112234688999999999999887642  146999999987544321        


Q ss_pred             --------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCC----ccchHHHHhh
Q 042560          193 --------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGK----LEVDQEIRDV  254 (287)
Q Consensus       193 --------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~----~~~~~~~~~~  254 (287)
                                    ....|+.+|++.+.+++.++.+++  ++++.++||.+.++.....+...-..    ..........
T Consensus       145 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~  222 (337)
T 2c29_D          145 SCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN--IDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSI  222 (337)
T ss_dssp             TCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHT--CCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHH
T ss_pred             ccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHcC--CcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccc
Confidence                          233699999999999988877654  89999999999998643211000000    0000000000


Q ss_pred             hhcCCCCCCHHHHHHHHHHhhccC
Q 042560          255 QISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       255 ~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                       .....+..++|+|++++++++++
T Consensus       223 -~~~~~~i~v~Dva~a~~~~~~~~  245 (337)
T 2c29_D          223 -IRQGQFVHLDDLCNAHIYLFENP  245 (337)
T ss_dssp             -HTEEEEEEHHHHHHHHHHHHHCT
T ss_pred             -cCCCCEEEHHHHHHHHHHHhcCc
Confidence             01122456999999999998753

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.86  E-value=2.7e-21  Score=173.08  Aligned_cols=207  Identities=17%  Similarity=0.098  Sum_probs=151.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChh--HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           49 VVLITGASSGIGKHLAYEYARR-RARLVLVARRER--QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +++||||+|+||++++++|+++ |++|++++|+..  ..+.. +.+.  ...++.++.+|++|.+++.+++++     ++
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~-----~~   73 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS--ESNRYNFEHADICDSAEITRIFEQ-----YQ   73 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT--TCTTEEEEECCTTCHHHHHHHHHH-----HC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh--cCCCeEEEECCCCCHHHHHHHHhh-----cC
Confidence            4999999999999999999998 799999998642  22211 1111  123588899999999999888865     27


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC------CEEEEEcCCCC--CC--------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK------GKIIVVASAAG--WL--------  189 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~------g~iv~isS~~~--~~--------  189 (287)
                      +|++|||||.....     .+.+++++.+++|+.++..+++++.+.|..-+      +++|++||...  ..        
T Consensus        74 ~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~  148 (361)
T 1kew_A           74 PDAVMHLAAESHVD-----RSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVEN  148 (361)
T ss_dssp             CSEEEECCSCCCHH-----HHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCT
T ss_pred             CCEEEECCCCcChh-----hhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccc
Confidence            99999999975421     12245678899999999999999999875322      69999999642  11        


Q ss_pred             -----------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC
Q 042560          190 -----------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL  258 (287)
Q Consensus       190 -----------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (287)
                                 +.+....|+.+|++.+.+++.++.+++  ++++.++||.+.++.....        .....+.+.....
T Consensus       149 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~--------~~~~~~~~~~~~~  218 (361)
T 1kew_A          149 SVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYG--LPTIVTNCSNNYGPYHFPE--------KLIPLVILNALEG  218 (361)
T ss_dssp             TSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEESTTCCTT--------SHHHHHHHHHHHT
T ss_pred             cccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhC--CcEEEEeeceeECCCCCcc--------cHHHHHHHHHHcC
Confidence                       234567899999999999999999885  8999999999999874310        0011122111111


Q ss_pred             ------------CCCCCHHHHHHHHHHhhccC
Q 042560          259 ------------LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 ------------~~~~~p~evA~~i~~l~~~~  278 (287)
                                  ..+..++|+|+++++++++.
T Consensus       219 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~  250 (361)
T 1kew_A          219 KPLPIYGKGDQIRDWLYVEDHARALHMVVTEG  250 (361)
T ss_dssp             CCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC
T ss_pred             CCceEcCCCceeEeeEEHHHHHHHHHHHHhCC
Confidence                        11224999999999999764

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.85  E-value=4e-21  Score=171.62  Aligned_cols=212  Identities=17%  Similarity=0.081  Sum_probs=151.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh----HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER----QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++++++||||+|+||++++++|+++|++|++++|+..    .+++..+.+......++.++.+|++|.++++++++   
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---  101 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA---  101 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT---
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc---
Confidence            45789999999999999999999999999999999753    33333222211101358889999999998887764   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC--------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP--------  192 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~--------  192 (287)
                          ++|++||+||......     +.+++++.+++|+.++..+++++.+.   +.+++|++||.....+.+        
T Consensus       102 ----~~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~v~~SS~~~~~~~~~~~~~E~~  169 (352)
T 1sb8_A          102 ----GVDYVLHQAALGSVPR-----SINDPITSNATNIDGFLNMLIAARDA---KVQSFTYAASSSTYGDHPGLPKVEDT  169 (352)
T ss_dssp             ----TCSEEEECCSCCCHHH-----HHHCHHHHHHHHTHHHHHHHHHHHHT---TCSEEEEEEEGGGGTTCCCSSBCTTC
T ss_pred             ----CCCEEEECCcccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeccHHhcCCCCCCCCCCCC
Confidence                7899999999753221     22456778999999999999988652   337999999976543322        


Q ss_pred             ---CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----------
Q 042560          193 ---RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----------  259 (287)
Q Consensus       193 ---~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  259 (287)
                         ....|+.+|++.+.+++.++.+++  ++++.++||.+.++......   . .......+.+......          
T Consensus       170 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~g~g~~  243 (352)
T 1sb8_A          170 IGKPLSPYAVTKYVNELYADVFSRCYG--FSTIGLRYFNVFGRRQDPNG---A-YAAVIPKWTSSMIQGDDVYINGDGET  243 (352)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCEECTTCCCCS---T-TCCHHHHHHHHHHHTCCCEEESSSCC
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHcC--CCEEEEEECceeCcCCCCCc---c-hhhHHHHHHHHHHCCCCcEEeCCCCc
Confidence               356899999999999999998875  88999999999998643210   0 0001112222111111          


Q ss_pred             --CCCCHHHHHHHHHHhhcc
Q 042560          260 --PVQPTEECAKAIVNSACR  277 (287)
Q Consensus       260 --~~~~p~evA~~i~~l~~~  277 (287)
                        .+..++|+|++++.++..
T Consensus       244 ~~~~i~v~Dva~a~~~~~~~  263 (352)
T 1sb8_A          244 SRDFCYIENTVQANLLAATA  263 (352)
T ss_dssp             EECCEEHHHHHHHHHHHHTC
T ss_pred             eEeeEEHHHHHHHHHHHHhc
Confidence              123499999999998865

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.85  E-value=5.5e-21  Score=171.45  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=144.4

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHH--cCCeEEEEeCChhHHHHHH------HHHHhcCCCeeEEEeecCCCHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYAR--RRARLVLVARRERQLREVA------DQAELMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~--~G~~vv~~~r~~~~~~~~~------~~~~~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      .|++++++++||||+|+||++++++|++  +|++|++++|+........      ..........+.++.+|++|.++++
T Consensus         5 ~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR   84 (362)
T ss_dssp             SCCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred             chhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence            4678899999999999999999999999  8999999999765211000      0011112235789999999999887


Q ss_pred             HHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---  190 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---  190 (287)
                      ++      ...++|++||+||....       +.++++..+++|+.++..+++++.    +.++++|++||......   
T Consensus        85 ~~------~~~~~D~vih~A~~~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~----~~~~~~V~~SS~~vyg~~~~  147 (362)
T 3sxp_A           85 RL------EKLHFDYLFHQAAVSDT-------TMLNQELVMKTNYQAFLNLLEIAR----SKKAKVIYASSAGVYGNTKA  147 (362)
T ss_dssp             HH------TTSCCSEEEECCCCCGG-------GCCCHHHHHHHHTHHHHHHHHHHH----HTTCEEEEEEEGGGGCSCCS
T ss_pred             Hh------hccCCCEEEECCccCCc-------cccCHHHHHHHHHHHHHHHHHHHH----HcCCcEEEeCcHHHhCCCCC
Confidence            76      23589999999996432       236778899999999999998873    34567999999443211   


Q ss_pred             -------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----
Q 042560          191 -------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----  259 (287)
Q Consensus       191 -------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  259 (287)
                             ......|+.+|++.+.+++.++.+    +++..+.|+.+..|.......    .......+.+......    
T Consensus       148 ~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~lR~~~v~Gp~~~~~~~----~~~~~~~~~~~~~~~~~~~~  219 (362)
T 3sxp_A          148 PNVVGKNESPENVYGFSKLCMDEFVLSHSND----NVQVGLRYFNVYGPREFYKEK----TASMVLQLALGAMAFKEVKL  219 (362)
T ss_dssp             SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT----SCEEEEEECSEESTTCGGGGG----GSCHHHHHHHHHHTTSEEEC
T ss_pred             CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc----CCEEEEEeCceeCcCCCCCCc----chhHHHHHHHHHHhCCCeEE
Confidence                   122456999999999999988776    455666776666553321000    0001122222221111    


Q ss_pred             --------CCCCHHHHHHHHHHhhccCC
Q 042560          260 --------PVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       260 --------~~~~p~evA~~i~~l~~~~~  279 (287)
                              .+..++|+|++++++++++.
T Consensus       220 ~~~g~~~~~~i~v~Dva~ai~~~~~~~~  247 (362)
T 3sxp_A          220 FEFGEQLRDFVYIEDVIQANVKAMKAQK  247 (362)
T ss_dssp             SGGGCCEEECEEHHHHHHHHHHHTTCSS
T ss_pred             ECCCCeEEccEEHHHHHHHHHHHHhcCC
Confidence                    12239999999999998653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.85  E-value=5.5e-20  Score=151.40  Aligned_cols=191  Identities=16%  Similarity=0.135  Sum_probs=136.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+|+||++++++|+++|++|++++|+.++.+..       ...++.++.+|++|.+++.++++       .
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~-------~   67 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-------GPRPAHVVVGDVLQAADVDKTVA-------G   67 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-------SCCCSEEEESCTTSHHHHHHHHT-------T
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-------cCCceEEEEecCCCHHHHHHHHc-------C
Confidence            347899999999999999999999999999999998764321       12358899999999998877764       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC----CChhhhhhH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP----RMSFYNASK  201 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~----~~~~Y~asK  201 (287)
                      +|++||++|....         +++   .++|+.+...+++++.+.   +.+++|++||.......+    ....|+.+|
T Consensus        68 ~d~vi~~a~~~~~---------~~~---~~~n~~~~~~~~~~~~~~---~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K  132 (206)
T 1hdo_A           68 QDAVIVLLGTRND---------LSP---TTVMSEGARNIVAAMKAH---GVDKVVACTSAFLLWDPTKVPPRLQAVTDDH  132 (206)
T ss_dssp             CSEEEECCCCTTC---------CSC---CCHHHHHHHHHHHHHHHH---TCCEEEEECCGGGTSCTTCSCGGGHHHHHHH
T ss_pred             CCEEEECccCCCC---------CCc---cchHHHHHHHHHHHHHHh---CCCeEEEEeeeeeccCcccccccchhHHHHH
Confidence            7999999997532         111   236777777766665432   237999999986654443    567899999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcc-cCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLI-ESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      ++++.+.+.    .  .++++.++||.+ .++....... .         . . ..+..++..++|+|+.++++++++. 
T Consensus       133 ~~~e~~~~~----~--~i~~~~lrp~~~~~~~~~~~~~~-~---------~-~-~~~~~~~i~~~Dva~~~~~~~~~~~-  193 (206)
T 1hdo_A          133 IRMHKVLRE----S--GLKYVAVMPPHIGDQPLTGAYTV-T---------L-D-GRGPSRVISKHDLGHFMLRCLTTDE-  193 (206)
T ss_dssp             HHHHHHHHH----T--CSEEEEECCSEEECCCCCSCCEE-E---------S-S-SCSSCSEEEHHHHHHHHHHTTSCST-
T ss_pred             HHHHHHHHh----C--CCCEEEEeCCcccCCCCCcceEe-c---------c-c-CCCCCCccCHHHHHHHHHHHhcCcc-
Confidence            999998742    2  389999999998 3433221110 0         0 0 0010234569999999999998753 


Q ss_pred             cccCC
Q 042560          281 YLTQP  285 (287)
Q Consensus       281 ~itG~  285 (287)
                       .+|+
T Consensus       194 -~~g~  197 (206)
T 1hdo_A          194 -YDGH  197 (206)
T ss_dssp             -TTTC
T ss_pred             -cccc
Confidence             4454

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.84  E-value=8.6e-21  Score=169.71  Aligned_cols=211  Identities=13%  Similarity=0.042  Sum_probs=154.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++++++||||+|+||++++++|+++|++|++++|+....++..+.+..  ..++.++.+|++|.+++.++++..     
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~-----   79 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV--ADGMQSEIGDIRDQNKLLESIREF-----   79 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT--TTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhcc--CCceEEEEccccCHHHHHHHHHhc-----
Confidence            5688999999999999999999999999999999987654433333221  235888999999999998888764     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------CCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------PPP  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------~~~  192 (287)
                      ++|++||+||.....     .+.+++++.+++|+.++..+++++.+.  ...+++|++||.....            +.+
T Consensus        80 ~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~  152 (357)
T 1rkx_A           80 QPEIVFHMAAQPLVR-----LSYSEPVETYSTNVMGTVYLLEAIRHV--GGVKAVVNITSDKCYDNKEWIWGYRENEAMG  152 (357)
T ss_dssp             CCSEEEECCSCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHH--CCCCEEEEECCGGGBCCCCSSSCBCTTSCBC
T ss_pred             CCCEEEECCCCcccc-----cchhCHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEecCHHHhCCCCcCCCCCCCCCCC
Confidence            689999999963211     122456788999999999999998763  2247999999975321            233


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhC------C-CeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-------
Q 042560          193 RMSFYNASKAAKIALYETLRVEFG------G-DIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-------  258 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~------~-~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  258 (287)
                      ....|+.+|++.+.+++.++.++.      + .++++.++||.+.++....    ..   .....+.+.....       
T Consensus       153 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~----~~---~~~~~~~~~~~~g~~~~~~~  225 (357)
T 1rkx_A          153 GYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA----LD---RIVPDILRAFEQSQPVIIRN  225 (357)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC----SS---CHHHHHHHHHHTTCCEECSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc----cc---cHHHHHHHHHhcCCCEEECC
Confidence            567899999999999999999884      2 4999999999999975321    00   0112222211111       


Q ss_pred             ----CCCCCHHHHHHHHHHhhc
Q 042560          259 ----LPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       259 ----~~~~~p~evA~~i~~l~~  276 (287)
                          ..+...+|+|++++.++.
T Consensus       226 ~~~~~~~v~v~Dva~a~~~~~~  247 (357)
T 1rkx_A          226 PHAIRPWQHVLEPLSGYLLLAQ  247 (357)
T ss_dssp             TTCEECCEETHHHHHHHHHHHH
T ss_pred             CCCeeccEeHHHHHHHHHHHHH
Confidence                112248999999998886

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.84  E-value=7.5e-21  Score=167.45  Aligned_cols=208  Identities=12%  Similarity=0.042  Sum_probs=139.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC-ChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVAR-RERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r-~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ||+++||||+|+||++++++|+++|++|+++.| +.+..++. ..+....  ..++.++.+|++|.++++++++      
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   73 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFLTNLPGASEKLHFFNADLSNPDSFAAAIE------   73 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHHHTSTTHHHHEEECCCCTTCGGGGHHHHT------
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHHHhhhccCCceEEEecCCCCHHHHHHHHc------
Confidence            588999999999999999999999999999988 54321111 0111111  1247788899999999887764      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC----------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR----------  193 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~----------  193 (287)
                       .+|++||+|+...      ....+.+++.+++|+.++..+++++.+.  .+.+++|++||..+..+.+.          
T Consensus        74 -~~d~vih~A~~~~------~~~~~~~~~~~~~nv~gt~~l~~aa~~~--~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~  144 (322)
T 2p4h_X           74 -GCVGIFHTASPID------FAVSEPEEIVTKRTVDGALGILKACVNS--KTVKRFIYTSSGSAVSFNGKDKDVLDESDW  144 (322)
T ss_dssp             -TCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHTTC--SSCCEEEEEEEGGGTSCSSSCCSEECTTCC
T ss_pred             -CCCEEEEcCCccc------CCCCChHHHHHHHHHHHHHHHHHHHHhc--CCccEEEEeccHHHcccCCCCCeecCCccc
Confidence             5799999996421      1111224558999999999999987553  12379999999875433211          


Q ss_pred             ------------ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh-----
Q 042560          194 ------------MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI-----  256 (287)
Q Consensus       194 ------------~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-----  256 (287)
                                  ...|+.||++.+.+++.++.+.+  ++++.++||.+.+++......      .......+...     
T Consensus       145 ~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~lrp~~v~g~~~~~~~~------~~~~~~~~~~~g~~~~  216 (322)
T 2p4h_X          145 SDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG--IDVVTLILPFIVGRFVCPKLP------DSIEKALVLVLGKKEQ  216 (322)
T ss_dssp             CCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHTT--CCEEEEEECEEESCCCSSSCC------HHHHHHTHHHHSCGGG
T ss_pred             cchhhhcccCcccccHHHHHHHHHHHHHHHHHhcC--CcEEEEcCCceECCCCCCCCC------chHHHHHHHHhCCCcc
Confidence                        11699999999888887776544  899999999999986542110      00011100000     


Q ss_pred             -c--CCCCCCHHHHHHHHHHhhccC
Q 042560          257 -S--LLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       257 -~--~~~~~~p~evA~~i~~l~~~~  278 (287)
                       .  ...+..++|+|++++++++++
T Consensus       217 ~~~~~~~~i~v~Dva~a~~~~~~~~  241 (322)
T 2p4h_X          217 IGVTRFHMVHVDDVARAHIYLLENS  241 (322)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHHHSC
T ss_pred             CcCCCcCEEEHHHHHHHHHHHhhCc
Confidence             0  012446999999999999753

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.84  E-value=1.2e-19  Score=164.53  Aligned_cols=173  Identities=19%  Similarity=0.113  Sum_probs=132.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHH-HcCCeEEEEeCChhH---------HHHHHHHHHhcCC----Ce---eEEEeecCCCH
Q 042560           47 GKVVLITGASSGIGKHLAYEYA-RRRARLVLVARRERQ---------LREVADQAELMGS----PF---ALAIPADVSKV  109 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~-~~G~~vv~~~r~~~~---------~~~~~~~~~~~~~----~~---~~~~~~D~~~~  109 (287)
                      +++++||||+|+||++++++|+ ++|++|++++|+...         .+...+.++...+    ..   +.++.+|++|.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            3479999999999999999999 999999999987544         3333332332211    13   88899999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL  189 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~  189 (287)
                      +++++++++    ++++|++|||||......     +.+++++.+++|+.++..+++++..   .+.+++|++||.... 
T Consensus        82 ~~~~~~~~~----~~~~d~vih~A~~~~~~~-----~~~~~~~~~~~Nv~g~~~ll~a~~~---~~~~~iv~~SS~~v~-  148 (397)
T 1gy8_A           82 DFLNGVFTR----HGPIDAVVHMCAFLAVGE-----SVRDPLKYYDNNVVGILRLLQAMLL---HKCDKIIFSSSAAIF-  148 (397)
T ss_dssp             HHHHHHHHH----SCCCCEEEECCCCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEGGGT-
T ss_pred             HHHHHHHHh----cCCCCEEEECCCccCcCc-----chhhHHHHHHHHhHHHHHHHHHHHH---hCCCEEEEECCHHHh-
Confidence            998877653    456999999999754321     1245677899999999999888633   223799999996443 


Q ss_pred             CCC-------------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          190 PPP-------------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       190 ~~~-------------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      +.+                   ....|+.+|++.+.+++.++.+++  ++++.++||.+..+..
T Consensus       149 g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~g--i~~~ilRp~~v~G~~~  210 (397)
T 1gy8_A          149 GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG--IKGICLRYFNACGAHE  210 (397)
T ss_dssp             BSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECCCT
T ss_pred             CCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHC--CcEEEEeccceeCCCc
Confidence            222                   257899999999999999999985  8999999999988753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.7e-20  Score=157.15  Aligned_cols=194  Identities=16%  Similarity=0.086  Sum_probs=140.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||++++++|+++|++|++++|+.++.+..        ...+.++.+|++|.++++++++       ++|
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~-------~~d   69 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE--------NEHLKVKKADVSSLDEVCEVCK-------GAD   69 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC--------CTTEEEECCCTTCHHHHHHHHT-------TCS
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc--------cCceEEEEecCCCHHHHHHHhc-------CCC
Confidence            6899999999999999999999999999999998764322        1358899999999999888775       589


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC----------CChhh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP----------RMSFY  197 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~----------~~~~Y  197 (287)
                      ++||++|....       +    .+.+++|+.+...+++++..   .+.+++|++||.....+.+          ....|
T Consensus        70 ~vi~~a~~~~~-------~----~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y  135 (227)
T 3dhn_A           70 AVISAFNPGWN-------N----PDIYDETIKVYLTIIDGVKK---AGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENIL  135 (227)
T ss_dssp             EEEECCCC-----------------CCSHHHHHHHHHHHHHHH---TTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGH
T ss_pred             EEEEeCcCCCC-------C----hhHHHHHHHHHHHHHHHHHH---hCCCEEEEeCChhhccCCCCCccccCCcchHHHH
Confidence            99999986411       1    12678888888777777643   1236999999987665433          36789


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCc-ccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGK-FLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +.+|++.+.+.+.++.+.+  ++++.++||.+.++..... +..........       .....+..++|+|++++.++.
T Consensus       136 ~~sK~~~e~~~~~~~~~~~--~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~Dva~ai~~~l~  206 (227)
T 3dhn_A          136 PGVKALGEFYLNFLMKEKE--IDWVFFSPAADMRPGVRTGRYRLGKDDMIVD-------IVGNSHISVEDYAAAMIDELE  206 (227)
T ss_dssp             HHHHHHHHHHHHTGGGCCS--SEEEEEECCSEEESCCCCCCCEEESSBCCCC-------TTSCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccC--ccEEEEeCCcccCCCccccceeecCCCcccC-------CCCCcEEeHHHHHHHHHHHHh
Confidence            9999999998888877543  8999999999987754311 10000000000       001223359999999999998


Q ss_pred             cCC
Q 042560          277 RGD  279 (287)
Q Consensus       277 ~~~  279 (287)
                      ++.
T Consensus       207 ~~~  209 (227)
T 3dhn_A          207 HPK  209 (227)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            764

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.84  E-value=4.1e-21  Score=165.13  Aligned_cols=180  Identities=15%  Similarity=0.115  Sum_probs=140.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+|+||++++++|+++|++|++++|+..+..          ...+.++.+|++|.+++.++++       ++|
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~-------~~d   65 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----------EAHEEIVACDLADAQAVHDLVK-------DCD   65 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----------CTTEEECCCCTTCHHHHHHHHT-------TCS
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----------CCCccEEEccCCCHHHHHHHHc-------CCC
Confidence            68999999999999999999999999999999865311          0247888999999998887764       589


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC------------CCh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP------------RMS  195 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~------------~~~  195 (287)
                      ++|||||..         ..+.+++.+++|+.++..+++++.+   .+.+++|++||.....+.+            ...
T Consensus        66 ~vi~~a~~~---------~~~~~~~~~~~n~~~~~~l~~a~~~---~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~  133 (267)
T 3ay3_A           66 GIIHLGGVS---------VERPWNDILQANIIGAYNLYEAARN---LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDS  133 (267)
T ss_dssp             EEEECCSCC---------SCCCHHHHHHHTHHHHHHHHHHHHH---TTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCS
T ss_pred             EEEECCcCC---------CCCCHHHHHHHHHHHHHHHHHHHHH---hCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCC
Confidence            999999974         1255678899999999999998754   2347999999986543322            357


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCccc-CCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIE-SEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|+.+|++.+.+++.++.+.+  ++++.++||.+. ++..              ...      ......++|+|++++.+
T Consensus       134 ~Y~~sK~~~e~~~~~~~~~~g--i~~~~lrp~~v~~~~~~--------------~~~------~~~~~~~~dva~~~~~~  191 (267)
T 3ay3_A          134 LYGLSKCFGEDLASLYYHKFD--IETLNIRIGSCFPKPKD--------------ARM------MATWLSVDDFMRLMKRA  191 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--CCEEEEEECBCSSSCCS--------------HHH------HHHBCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcC--CCEEEEeceeecCCCCC--------------CCe------eeccccHHHHHHHHHHH
Confidence            899999999999998876543  899999999984 3310              110      11234689999999999


Q ss_pred             hccC
Q 042560          275 ACRG  278 (287)
Q Consensus       275 ~~~~  278 (287)
                      +.++
T Consensus       192 ~~~~  195 (267)
T 3ay3_A          192 FVAP  195 (267)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            8765

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.83  E-value=1.2e-19  Score=151.54  Aligned_cols=188  Identities=12%  Similarity=0.108  Sum_probs=131.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|+.++.++..       ...+.++.+|++|.++         +..+++|+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------~~~~~~~~~D~~d~~~---------~~~~~~d~   65 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-------GATVATLVKEPLVLTE---------ADLDSVDA   65 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-------CTTSEEEECCGGGCCH---------HHHTTCSE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-------CCCceEEecccccccH---------hhcccCCE
Confidence            4999999999999999999999999999999988765431       1358899999999887         12257899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC--------------C
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR--------------M  194 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~--------------~  194 (287)
                      +|||+|....       . +    ....|+.+    .+.+++.+++.++++|++||..+..+.+.              .
T Consensus        66 vi~~ag~~~~-------~-~----~~~~n~~~----~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~  129 (224)
T 3h2s_A           66 VVDALSVPWG-------S-G----RGYLHLDF----ATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFPESAASQ  129 (224)
T ss_dssp             EEECCCCCTT-------S-S----CTHHHHHH----HHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCCGGGGGS
T ss_pred             EEECCccCCC-------c-c----hhhHHHHH----HHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCCCCCccc
Confidence            9999998511       1 1    12345444    46666666666689999999877665444              6


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ..|+.+|++.+.+ +.+.   ... ++++.++||.+.++.....+.........       .........++|+|++++.
T Consensus       130 ~~y~~sK~~~e~~-~~~~---~~~~i~~~ivrp~~v~g~~~~~~~~~~~~~~~~-------~~~~~~~i~~~DvA~~~~~  198 (224)
T 3h2s_A          130 PWYDGALYQYYEY-QFLQ---MNANVNWIGISPSEAFPSGPATSYVAGKDTLLV-------GEDGQSHITTGNMALAILD  198 (224)
T ss_dssp             TTHHHHHHHHHHH-HHHT---TCTTSCEEEEEECSBCCCCCCCCEEEESSBCCC-------CTTSCCBCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH-HHHH---hcCCCcEEEEcCccccCCCcccCceeccccccc-------CCCCCceEeHHHHHHHHHH
Confidence            7899999998854 2222   233 99999999999987322111000000000       0111234579999999999


Q ss_pred             hhccCC
Q 042560          274 SACRGD  279 (287)
Q Consensus       274 l~~~~~  279 (287)
                      ++.++.
T Consensus       199 ~l~~~~  204 (224)
T 3h2s_A          199 QLEHPT  204 (224)
T ss_dssp             HHHSCC
T ss_pred             HhcCcc
Confidence            998753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.83  E-value=4.6e-20  Score=164.21  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=130.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH------HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ------LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++++||||+|+||.+++++|+++|++|++++|+...      ..+..+.+....+.++.++.+|++|.+++++++++. 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY-   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc-
Confidence            5789999999999999999999999999999885432      112222232211235888999999999988887642 


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------  189 (287)
                          ++|++||+||......     ..+++++.+++|+.++..+++++..   .+.+++|++||.....           
T Consensus        81 ----~~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~iv~~SS~~~~g~~~~~~~~E~~  148 (348)
T 1ek6_A           81 ----SFMAVIHFAGLKAVGE-----SVQKPLDYYRVNLTGTIQLLEIMKA---HGVKNLVFSSSATVYGNPQYLPLDEAH  148 (348)
T ss_dssp             ----CEEEEEECCSCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEGGGGCSCSSSSBCTTS
T ss_pred             ----CCCEEEECCCCcCccc-----hhhchHHHHHHHHHHHHHHHHHHHH---hCCCEEEEECcHHHhCCCCCCCcCCCC
Confidence                7999999999754321     1245667899999999998886532   2237999999975432           


Q ss_pred             C-CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 P-PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 ~-~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      + .|....|+.+|++.+.+++.++.+ ++.+++..+.|+.+..+.
T Consensus       149 ~~~p~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~  192 (348)
T 1ek6_A          149 PTGGCTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAH  192 (348)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCC
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCC
Confidence            1 123678999999999999999988 444889999999887764

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.83  E-value=2.7e-20  Score=165.43  Aligned_cols=173  Identities=19%  Similarity=0.155  Sum_probs=132.9

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcC-------CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRR-------ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G-------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      ...++++++++||||+|+||.+++++|+++|       ++|++++|+.....+       ....++.++.+|++|.++++
T Consensus         8 ~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-------~~~~~~~~~~~Dl~d~~~~~   80 (342)
T 2hrz_A            8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-------GFSGAVDARAADLSAPGEAE   80 (342)
T ss_dssp             CCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-------TCCSEEEEEECCTTSTTHHH
T ss_pred             CCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-------ccCCceeEEEcCCCCHHHHH
Confidence            3456788999999999999999999999999       899999997643221       12246888999999999988


Q ss_pred             HHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCC
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPP  191 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~  191 (287)
                      ++++      +++|++||+||....      .+.+++++.+++|+.++..+++++.+...++  .+++|++||.....+.
T Consensus        81 ~~~~------~~~d~vih~A~~~~~------~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~  148 (342)
T 2hrz_A           81 KLVE------ARPDVIFHLAAIVSG------EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAP  148 (342)
T ss_dssp             HHHH------TCCSEEEECCCCCHH------HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSS
T ss_pred             HHHh------cCCCEEEECCccCcc------cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCC
Confidence            7765      479999999997541      1225677889999999999999987754221  4799999998654322


Q ss_pred             -C----------CChhhhhhHHHHHHHHHHHHHHhCC--C-eEEEEEe--CCcccCC
Q 042560          192 -P----------RMSFYNASKAAKIALYETLRVEFGG--D-IGITIVT--PGLIESE  232 (287)
Q Consensus       192 -~----------~~~~Y~asKaal~~~~~~la~e~~~--~-i~v~~i~--PG~v~t~  232 (287)
                       +          ....|+.+|++.+.+++.++.+++-  . +|++.+.  ||...++
T Consensus       149 ~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~  205 (342)
T 2hrz_A          149 LPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAA  205 (342)
T ss_dssp             CCSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCS
T ss_pred             CCCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcch
Confidence             1          4678999999999999999887542  2 6666666  7765543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.83  E-value=1e-19  Score=161.45  Aligned_cols=195  Identities=18%  Similarity=0.135  Sum_probs=140.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|+..+.++..    .   ..+.++.+|++|.+++.++++       ++|+
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~----~---~~~~~~~~Dl~d~~~~~~~~~-------~~d~   80 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA----Y---LEPECRVAEMLDHAGLERALR-------GLDG   80 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG----G---GCCEEEECCTTCHHHHHHHTT-------TCSE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc----c---CCeEEEEecCCCHHHHHHHHc-------CCCE
Confidence            7999999999999999999999999999999876543221    1   147888999999988877764       6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCC---------------
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPR---------------  193 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~---------------  193 (287)
                      +||+||....       ..+++++.+++|+.++..+++++.+.   +.+++|++||.....+.+.               
T Consensus        81 vih~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~  150 (342)
T 2x4g_A           81 VIFSAGYYPS-------RPRRWQEEVASALGQTNPFYAACLQA---RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPS  150 (342)
T ss_dssp             EEEC-------------------CHHHHHHHHHHHHHHHHHHH---TCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCT
T ss_pred             EEECCccCcC-------CCCCHHHHHHHHHHHHHHHHHHHHHc---CCCeEEEECCHHhhCcCCCCCCCCCCCCCCcccc
Confidence            9999996431       12567788999999999999998764   2379999999876544333               


Q ss_pred             -ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC---------CCCC
Q 042560          194 -MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL---------PVQP  263 (287)
Q Consensus       194 -~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  263 (287)
                       ...|+.+|.+.+.+++.++.+   .++++.++||.+.++.....    .  .   ..+.+......         .+..
T Consensus       151 ~~~~Y~~sK~~~e~~~~~~~~~---g~~~~ilrp~~v~g~~~~~~----~--~---~~~~~~~~~~~~~~~~~~~~~~i~  218 (342)
T 2x4g_A          151 GKSSYVLCKWALDEQAREQARN---GLPVVIGIPGMVLGELDIGP----T--T---GRVITAIGNGEMTHYVAGQRNVID  218 (342)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHT---TCCEEEEEECEEECSCCSSC----S--T---THHHHHHHTTCCCEEECCEEEEEE
T ss_pred             ccChHHHHHHHHHHHHHHHhhc---CCcEEEEeCCceECCCCccc----c--H---HHHHHHHHcCCCccccCCCcceee
Confidence             678999999999999999874   38999999999999864110    0  0   11111111111         1225


Q ss_pred             HHHHHHHHHHhhccCC
Q 042560          264 TEECAKAIVNSACRGD  279 (287)
Q Consensus       264 p~evA~~i~~l~~~~~  279 (287)
                      ++|+|++++.+++++.
T Consensus       219 v~Dva~~~~~~~~~~~  234 (342)
T 2x4g_A          219 AAEAGRGLLMALERGR  234 (342)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999998653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.83  E-value=9.3e-20  Score=167.08  Aligned_cols=213  Identities=15%  Similarity=0.053  Sum_probs=147.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh---HHHHHHHHHHhc--------CCCeeEEEeecCCCHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER---QLREVADQAELM--------GSPFALAIPADVSKVED  111 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~---~~~~~~~~~~~~--------~~~~~~~~~~D~~~~~~  111 (287)
                      ...++++++||||+|+||++++++|+++|++|++++|+..   ..+...+.++..        ...++.++.+|++|.++
T Consensus        65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            3456789999999999999999999999999999999877   333333333221        12368999999999888


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC-C--
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-W--  188 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~-~--  188 (287)
                      +.        ..+++|++|||||....        .+.+++.+++|+.++..+++++.+    +.+++|++||... .  
T Consensus       145 l~--------~~~~~d~Vih~A~~~~~--------~~~~~~~~~~Nv~g~~~l~~aa~~----~~~~~v~~SS~~~G~~~  204 (427)
T 4f6c_A          145 VV--------LPENMDTIIHAGARTDH--------FGDDDEFEKVNVQGTVDVIRLAQQ----HHARLIYVSTISVGTYF  204 (427)
T ss_dssp             CC--------CSSCCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHH----TTCEEEEEEEGGGGSEE
T ss_pred             CC--------CcCCCCEEEECCcccCC--------CCCHHHHHHHHHHHHHHHHHHHHh----cCCcEEEECchHhCCCc
Confidence            76        45789999999997531        255678899999999999999876    3579999999876 0  


Q ss_pred             ---------------CCCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh
Q 042560          189 ---------------LPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD  253 (287)
Q Consensus       189 ---------------~~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~  253 (287)
                                     .+......|+.+|.+.+.+++.++.   ..++++.++||.+.++.....+..... ......+.+
T Consensus       205 ~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~g~~~~ivRpg~v~G~~~~~~~~~~~~-~~~~~~~~~  280 (427)
T 4f6c_A          205 DIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN---NGLDGRIVRVGNLTSPYNGRWHMRNIK-TNRFSMVMN  280 (427)
T ss_dssp             CSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH---TTCCEEEEEECCEESCSSSCCCCTTGG-GCHHHHHHH
T ss_pred             cCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH---cCCCEEEEeCCeeecCCCCCccccCcc-hHHHHHHHH
Confidence                           0122567899999999999998764   238999999999998865433211100 001112222


Q ss_pred             hhhcC-----------CCCCCHHHHHHHHHHhhccCC
Q 042560          254 VQISL-----------LPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       254 ~~~~~-----------~~~~~p~evA~~i~~l~~~~~  279 (287)
                      .....           ..+...+|+|++++.++..+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~  317 (427)
T 4f6c_A          281 DLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT  317 (427)
T ss_dssp             HHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC
T ss_pred             HHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC
Confidence            22111           113358999999999998653

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.83  E-value=8.1e-20  Score=162.58  Aligned_cols=213  Identities=13%  Similarity=0.080  Sum_probs=145.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAEL-MGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .|.+++++++||||+|+||.+++++|+++|  .+|+..+|+.....  .+.+.. ....++.++.+|++|.+++.++++.
T Consensus        19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   96 (346)
T 4egb_A           19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE   96 (346)
T ss_dssp             -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence            355678999999999999999999999999  67888887642110  011111 1123688999999999999998875


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-------
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-------  191 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-------  191 (287)
                      .     ++|++||+||......     ..+.++..+++|+.++..+++++...   +.+++|++||.....+.       
T Consensus        97 ~-----~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~~~~~ll~a~~~~---~~~~~v~~SS~~vy~~~~~~~~~~  163 (346)
T 4egb_A           97 R-----DVQVIVNFAAESHVDR-----SIENPIPFYDTNVIGTVTLLELVKKY---PHIKLVQVSTDEVYGSLGKTGRFT  163 (346)
T ss_dssp             H-----TCCEEEECCCCC--------------CHHHHHHTHHHHHHHHHHHHS---TTSEEEEEEEGGGGCCCCSSCCBC
T ss_pred             c-----CCCEEEECCcccchhh-----hhhCHHHHHHHHHHHHHHHHHHHHhc---CCCEEEEeCchHHhCCCCcCCCcC
Confidence            3     6899999999865331     23566788999999999888887542   23689999997543221       


Q ss_pred             -----CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC-----
Q 042560          192 -----PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-----  261 (287)
Q Consensus       192 -----~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  261 (287)
                           .....|+.+|.+.+.+++.++.+++  ++++.+.||.+.++.....        .....+.+......++     
T Consensus       164 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  233 (346)
T 4egb_A          164 EETPLAPNSPYSSSKASADMIALAYYKTYQ--LPVIVTRCSNNYGPYQYPE--------KLIPLMVTNALEGKKLPLYGD  233 (346)
T ss_dssp             TTSCCCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEESTTCCTT--------SHHHHHHHHHHTTCCCEEETT
T ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHhC--CCEEEEeecceeCcCCCcc--------chHHHHHHHHHcCCCceeeCC
Confidence                 1247899999999999999998875  8899999999988754211        1112222222222111     


Q ss_pred             -------CCHHHHHHHHHHhhccCC
Q 042560          262 -------QPTEECAKAIVNSACRGD  279 (287)
Q Consensus       262 -------~~p~evA~~i~~l~~~~~  279 (287)
                             ..++|+|++++.++.++.
T Consensus       234 ~~~~~~~i~v~Dva~a~~~~~~~~~  258 (346)
T 4egb_A          234 GLNVRDWLHVTDHCSAIDVVLHKGR  258 (346)
T ss_dssp             SCCEECEEEHHHHHHHHHHHHHHCC
T ss_pred             CCeEEeeEEHHHHHHHHHHHHhcCC
Confidence                   138999999999998653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.83  E-value=2.5e-19  Score=149.15  Aligned_cols=187  Identities=16%  Similarity=0.180  Sum_probs=123.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|+.++.++..        ..+.++.+|++|.++  +       ..+++|+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--------~~~~~~~~D~~d~~~--~-------~~~~~d~   64 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--------KDINILQKDIFDLTL--S-------DLSDQNV   64 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--------SSSEEEECCGGGCCH--H-------HHTTCSE
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--------CCCeEEeccccChhh--h-------hhcCCCE
Confidence            5899999999999999999999999999999987765432        258899999999887  1       2257899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC------------Ch
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR------------MS  195 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~------------~~  195 (287)
                      +|||+|....              ....|    +...+.+++.+++.+ +++|++||..+..+.++            ..
T Consensus        65 vi~~ag~~~~--------------~~~~~----~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~  126 (221)
T 3ew7_A           65 VVDAYGISPD--------------EAEKH----VTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAP  126 (221)
T ss_dssp             EEECCCSSTT--------------TTTSH----HHHHHHHHHHHCSCCSSEEEEECCCC-------------------CC
T ss_pred             EEECCcCCcc--------------ccchH----HHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHH
Confidence            9999997321              12223    445666777777664 89999999887654432            45


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCC-cccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGG-KFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      .|+.+|++.+.+ ..+..+ ...++++.++||.+.++.... .+..       ..+............+++|+|++++.+
T Consensus       127 ~y~~~k~~~e~~-~~~~~~-~~gi~~~ivrp~~v~g~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~Dva~~~~~~  197 (221)
T 3ew7_A          127 YYPTARAQAKQL-EHLKSH-QAEFSWTYISPSAMFEPGERTGDYQI-------GKDHLLFGSDGNSFISMEDYAIAVLDE  197 (221)
T ss_dssp             CSCCHHHHHHHH-HHHHTT-TTTSCEEEEECSSCCCCC----------------------------CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHhh-ccCccEEEEeCcceecCCCccCceEe-------ccccceecCCCCceEeHHHHHHHHHHH
Confidence            699999999887 333320 122999999999999872111 0000       000000001112244699999999999


Q ss_pred             hccCC
Q 042560          275 ACRGD  279 (287)
Q Consensus       275 ~~~~~  279 (287)
                      +.++.
T Consensus       198 l~~~~  202 (221)
T 3ew7_A          198 IERPN  202 (221)
T ss_dssp             HHSCS
T ss_pred             HhCcc
Confidence            98753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.83  E-value=1.8e-19  Score=162.75  Aligned_cols=211  Identities=15%  Similarity=0.054  Sum_probs=151.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+..++++++||||+|+||++++++|+++|++|++++|+........       ...+.++.+|++|.++++++++   
T Consensus        23 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~~v~~~~~Dl~d~~~~~~~~~---   92 (379)
T 2c5a_A           23 QYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED-------MFCDEFHLVDLRVMENCLKVTE---   92 (379)
T ss_dssp             CSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG-------GTCSEEEECCTTSHHHHHHHHT---
T ss_pred             ccccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc-------cCCceEEECCCCCHHHHHHHhC---
Confidence            344456789999999999999999999999999999999865422110       1247888999999998887763   


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------  189 (287)
                          ++|++||+||.......    ..+++++.+++|+.++..+++++..   .+.+++|++||.....           
T Consensus        93 ----~~d~Vih~A~~~~~~~~----~~~~~~~~~~~Nv~g~~~ll~a~~~---~~~~~~V~~SS~~v~~~~~~~~~~~~~  161 (379)
T 2c5a_A           93 ----GVDHVFNLAADMGGMGF----IQSNHSVIMYNNTMISFNMIEAARI---NGIKRFFYASSACIYPEFKQLETTNVS  161 (379)
T ss_dssp             ----TCSEEEECCCCCCCHHH----HTTCHHHHHHHHHHHHHHHHHHHHH---TTCSEEEEEEEGGGSCGGGSSSSSSCE
T ss_pred             ----CCCEEEECceecCcccc----cccCHHHHHHHHHHHHHHHHHHHHH---cCCCEEEEEeehheeCCCCCCCccCCC
Confidence                68999999997542111    1256778899999999999988753   2236999999965432           


Q ss_pred             -------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----
Q 042560          190 -------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----  258 (287)
Q Consensus       190 -------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----  258 (287)
                             +......|+.+|++.+.+++.++.+++  ++++.++||.+.++.......    .......+.+.....    
T Consensus       162 ~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilrp~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~  235 (379)
T 2c5a_A          162 LKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG--IECRIGRFHNIYGPFGTWKGG----REKAPAAFCRKAQTSTDRF  235 (379)
T ss_dssp             ECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECTTSCCSSS----CCCHHHHHHHHHHHCSSCE
T ss_pred             cCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHC--CCEEEEEeCceeCcCCCcccc----cccHHHHHHHHHHhCCCce
Confidence                   223456899999999999999998875  899999999999885432100    000112222221111    


Q ss_pred             ---------CCCCCHHHHHHHHHHhhccC
Q 042560          259 ---------LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 ---------~~~~~p~evA~~i~~l~~~~  278 (287)
                               ..+..++|+|++++.+++++
T Consensus       236 ~~~g~g~~~~~~i~v~Dva~ai~~~l~~~  264 (379)
T 2c5a_A          236 EMWGDGLQTRSFTFIDECVEGVLRLTKSD  264 (379)
T ss_dssp             EEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred             EEeCCCCeeEEEEEHHHHHHHHHHHhhcc
Confidence                     11224999999999999764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.82  E-value=1.1e-19  Score=162.00  Aligned_cols=215  Identities=14%  Similarity=0.046  Sum_probs=153.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC----CeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS----PFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      .|.+++++++||||+|+||++++++|+++|++|++++|+.....+..+.+.....    .++.++.+|++|.+++.++++
T Consensus        20 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   99 (351)
T 3ruf_A           20 QLIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK   99 (351)
T ss_dssp             HHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred             hCCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence            3556789999999999999999999999999999999976544433343333211    358999999999998877764


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC------
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP------  191 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~------  191 (287)
                             ++|++||+||......     ..+++...+++|+.++..+++++...   +.+++|++||.......      
T Consensus       100 -------~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~~~~~ll~a~~~~---~~~~~v~~SS~~vyg~~~~~~~~  164 (351)
T 3ruf_A          100 -------GVDHVLHQAALGSVPR-----SIVDPITTNATNITGFLNILHAAKNA---QVQSFTYAASSSTYGDHPALPKV  164 (351)
T ss_dssp             -------TCSEEEECCCCCCHHH-----HHHCHHHHHHHHTHHHHHHHHHHHHT---TCSEEEEEEEGGGGTTCCCSSBC
T ss_pred             -------CCCEEEECCccCCcch-----hhhCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEEecHHhcCCCCCCCCc
Confidence                   7899999999754321     22455678899999999888887432   23699999997654222      


Q ss_pred             -----CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC------
Q 042560          192 -----PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP------  260 (287)
Q Consensus       192 -----~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  260 (287)
                           .....|+.+|.+.+.+++.++.+++  ++++.++||.+..+......    ........+........+      
T Consensus       165 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~  238 (351)
T 3ruf_A          165 EENIGNPLSPYAVTKYVNEIYAQVYARTYG--FKTIGLRYFNVFGRRQDPNG----AYAAVIPKWTAAMLKGDDVYINGD  238 (351)
T ss_dssp             TTCCCCCCSHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECSEESTTCCCCS----TTCCHHHHHHHHHHHTCCCEEESS
T ss_pred             cCCCCCCCChhHHHHHHHHHHHHHHHHHhC--CCEEEEeeCceeCcCCCCCc----chhhHHHHHHHHHHcCCCcEEeCC
Confidence                 2256899999999999999999875  88899999999887543210    000111222222221111      


Q ss_pred             ------CCCHHHHHHHHHHhhcc
Q 042560          261 ------VQPTEECAKAIVNSACR  277 (287)
Q Consensus       261 ------~~~p~evA~~i~~l~~~  277 (287)
                            +...+|+|++++.++..
T Consensus       239 g~~~~~~i~v~Dva~a~~~~~~~  261 (351)
T 3ruf_A          239 GETSRDFCYIDNVIQMNILSALA  261 (351)
T ss_dssp             SCCEECCEEHHHHHHHHHHHHTC
T ss_pred             CCeEEeeEEHHHHHHHHHHHHhh
Confidence                  12389999999998875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.82  E-value=1e-19  Score=161.97  Aligned_cols=161  Identities=9%  Similarity=0.047  Sum_probs=123.7

Q ss_pred             hccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           38 RTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        38 ~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ......+.++|+++||||+|+||.+++++|+++|++|++++|+...             .++.++.+|++|.+++.++++
T Consensus        10 ~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------------~~~~~~~~Dl~d~~~~~~~~~   76 (347)
T 4id9_A           10 HSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------------TGGEEVVGSLEDGQALSDAIM   76 (347)
T ss_dssp             -----------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------------SCCSEEESCTTCHHHHHHHHT
T ss_pred             CCCcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------------CCccEEecCcCCHHHHHHHHh
Confidence            4455677789999999999999999999999999999999998764             247788999999999887764


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC--------
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL--------  189 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~--------  189 (287)
                             ++|++||+|+.....       .+.++..+++|+.++..+++++..   .+.+++|++||.....        
T Consensus        77 -------~~d~vih~A~~~~~~-------~~~~~~~~~~nv~~~~~ll~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~  139 (347)
T 4id9_A           77 -------GVSAVLHLGAFMSWA-------PADRDRMFAVNVEGTRRLLDAASA---AGVRRFVFASSGEVYPENRPEFLP  139 (347)
T ss_dssp             -------TCSEEEECCCCCCSS-------GGGHHHHHHHHTHHHHHHHHHHHH---TTCSEEEEEEEGGGTTTTSCSSSS
T ss_pred             -------CCCEEEECCcccCcc-------hhhHHHHHHHHHHHHHHHHHHHHH---cCCCeEEEECCHHHhCCCCCCCCC
Confidence                   789999999975322       134478899999999888888744   2236999999954321        


Q ss_pred             -----CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCccc
Q 042560          190 -----PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIE  230 (287)
Q Consensus       190 -----~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~  230 (287)
                           +......|+.+|.+.+.+++.++.+.+  ++++.+.|+.+.
T Consensus       140 ~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~  183 (347)
T 4id9_A          140 VTEDHPLCPNSPYGLTKLLGEELVRFHQRSGA--METVILRFSHTQ  183 (347)
T ss_dssp             BCTTSCCCCCSHHHHHHHHHHHHHHHHHHHSS--SEEEEEEECEEE
T ss_pred             cCCCCCCCCCChHHHHHHHHHHHHHHHHHhcC--CceEEEccceEe
Confidence                 234567899999999999999998864  899999999988

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.82  E-value=9.6e-20  Score=162.16  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=146.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARR--RARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++++||||+|+||++++++|+++  |++|++++|+... ..+..+   .....++.++.+|++|.++++++++       
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~-------   74 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE---AILGDRVELVVGDIADAELVDKLAA-------   74 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTG---GGCSSSEEEEECCTTCHHHHHHHHT-------
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHh---hhccCCeEEEECCCCCHHHHHHHhh-------
Confidence            68999999999999999999999  8999999996421 111111   1112358889999999988877764       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC--C-------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW--L-------------  189 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~--~-------------  189 (287)
                      .+|++||+||.....     .+.+++++.+++|+.++..+++++.+.    ++++|++||....  .             
T Consensus        75 ~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~~~~v~~SS~~vyg~~~~~~~~~~~~~~~  145 (348)
T 1oc2_A           75 KADAIVHYAAESHND-----NSLNDPSPFIHTNFIGTYTLLEAARKY----DIRFHHVSTDEVYGDLPLREDLPGHGEGP  145 (348)
T ss_dssp             TCSEEEECCSCCCHH-----HHHHCCHHHHHHHTHHHHHHHHHHHHH----TCEEEEEEEGGGGCCBCCGGGSTTTTCST
T ss_pred             cCCEEEECCcccCcc-----chhhCHHHHHHHHHHHHHHHHHHHHHh----CCeEEEecccceeCCCccccccccccccc
Confidence            459999999975421     122456778999999999999998765    3499999986522  1             


Q ss_pred             --------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---
Q 042560          190 --------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---  258 (287)
Q Consensus       190 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---  258 (287)
                              +.+....|+.+|++.+.+++.++.+++  ++++.++||.+.++.....        .....+.+.....   
T Consensus       146 ~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~ilrp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~  215 (348)
T 1oc2_A          146 GEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFG--VKATISNCSNNYGPYQHIE--------KFIPRQITNILAGIKP  215 (348)
T ss_dssp             TSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEESTTCCTT--------SHHHHHHHHHHHTCCC
T ss_pred             CCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhC--CCEEEEeeceeeCCCCCcc--------chHHHHHHHHHcCCCc
Confidence                    233567899999999999999999885  8999999999999864310        0011112111111   


Q ss_pred             ---------CCCCCHHHHHHHHHHhhccC
Q 042560          259 ---------LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       259 ---------~~~~~p~evA~~i~~l~~~~  278 (287)
                               ..+..++|+|++++++++++
T Consensus       216 ~~~~~~~~~~~~i~v~Dva~~~~~~~~~~  244 (348)
T 1oc2_A          216 KLYGEGKNVRDWIHTNDHSTGVWAILTKG  244 (348)
T ss_dssp             EEETTSCCEEECEEHHHHHHHHHHHHHHC
T ss_pred             eEecCCCceEeeEEHHHHHHHHHHHhhCC
Confidence                     11224999999999999754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.82  E-value=2.3e-19  Score=162.83  Aligned_cols=178  Identities=15%  Similarity=0.126  Sum_probs=132.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHH----------------HHHHHHhcCCCeeEEEeecCCCH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE----------------VADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~----------------~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      ++.+++||||+|.||.+++++|+++|++|++++|+.....+                ...........++.++.+|++|.
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~   89 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   89 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCH
Confidence            57889999999999999999999999999999987543211                11111111123588899999999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL  189 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~  189 (287)
                      ++++++++..     ++|++|||||........  .+.+.+...+++|+.++..+++++.+.  ..+.++|++||.....
T Consensus        90 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~~--~~~~~~V~~SS~~vyg  160 (404)
T 1i24_A           90 EFLAESFKSF-----EPDSVVHFGEQRSAPYSM--IDRSRAVYTQHNNVIGTLNVLFAIKEF--GEECHLVKLGTMGEYG  160 (404)
T ss_dssp             HHHHHHHHHH-----CCSEEEECCSCCCHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEECCGGGGC
T ss_pred             HHHHHHHhcc-----CCCEEEECCCCCCccchh--hCccchhhhHHHHHHHHHHHHHHHHHh--CCCcEEEEeCcHHHhC
Confidence            9998887754     689999999975432111  122334568899999999999988653  1124999999975321


Q ss_pred             ------------------------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          190 ------------------------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       190 ------------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                                              +......|+.+|++.+.+++.++.+++  +++++++||.+.++..
T Consensus       161 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~ivrp~~v~Gp~~  227 (404)
T 1i24_A          161 TPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVKT  227 (404)
T ss_dssp             CCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECSCC
T ss_pred             CCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeCCCC
Confidence                                    223456899999999999999998885  8999999999998854

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.81  E-value=6.3e-20  Score=160.92  Aligned_cols=195  Identities=17%  Similarity=0.096  Sum_probs=143.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||++++++|+++|++|++++|+.+...+..       ...+.++.+|++|.+ +.++++       . |
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~~~~~~~~Dl~d~~-~~~~~~-------~-d   64 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-------NPSAELHVRDLKDYS-WGAGIK-------G-D   64 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-------CTTSEEECCCTTSTT-TTTTCC-------C-S
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-------CCCceEEECccccHH-HHhhcC-------C-C
Confidence            46999999999999999999999999999999765432211       235788999999987 554432       3 9


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CCCCChh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PPPRMSF  196 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~~~~~~  196 (287)
                      ++||+||.....     .+.+++...+++|+.++..+++++...   +.+++|++||.....           +......
T Consensus        65 ~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~  136 (312)
T 3ko8_A           65 VVFHFAANPEVR-----LSTTEPIVHFNENVVATFNVLEWARQT---GVRTVVFASSSTVYGDADVIPTPEEEPYKPISV  136 (312)
T ss_dssp             EEEECCSSCSSS-----GGGSCHHHHHHHHHHHHHHHHHHHHHH---TCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSH
T ss_pred             EEEECCCCCCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCCh
Confidence            999999964321     233667788999999999999887432   346999999976431           2334678


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-C------------CCCC
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-L------------PVQP  263 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~  263 (287)
                      |+.+|++.+.+++.++.+++  ++++.++||.+.++.....         ....+....... .            .+..
T Consensus       137 Y~~sK~~~e~~~~~~~~~~g--~~~~~lrp~~v~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~  205 (312)
T 3ko8_A          137 YGAAKAAGEVMCATYARLFG--VRCLAVRYANVVGPRLRHG---------VIYDFIMKLRRNPNVLEVLGDGTQRKSYLY  205 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECTTCCSS---------HHHHHHHHHHHCTTEEEEC----CEECEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CCEEEEeeccccCcCCCCC---------hHHHHHHHHHhCCCCeEEcCCCCeEEeeEE
Confidence            99999999999999999985  8999999999999864321         111122211111 1            1113


Q ss_pred             HHHHHHHHHHhhcc
Q 042560          264 TEECAKAIVNSACR  277 (287)
Q Consensus       264 p~evA~~i~~l~~~  277 (287)
                      ++|+|++++.+++.
T Consensus       206 v~Dva~a~~~~~~~  219 (312)
T 3ko8_A          206 VRDAVEATLAAWKK  219 (312)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999976

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.81  E-value=6.1e-20  Score=161.08  Aligned_cols=165  Identities=18%  Similarity=0.179  Sum_probs=127.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|......+   .   .. ..+.++.+|++|.+++++++++     .++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~---~~-~~~~~~~~Dl~~~~~~~~~~~~-----~~~d~   69 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---N---VP-KGVPFFRVDLRDKEGVERAFRE-----FRPTH   69 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---G---SC-TTCCEECCCTTCHHHHHHHHHH-----HCCSE
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---h---cc-cCeEEEECCCCCHHHHHHHHHh-----cCCCE
Confidence            59999999999999999999999999999985432110   0   01 2466789999999999888764     26899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-------C------CCCCh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-------P------PPRMS  195 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-------~------~~~~~  195 (287)
                      +||+||.....     .+.+++.+.+++|+.++..+++++..   .+.+++|++||..+.+       +      .....
T Consensus        70 vi~~a~~~~~~-----~~~~~~~~~~~~N~~g~~~l~~a~~~---~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~  141 (311)
T 2p5y_A           70 VSHQAAQASVK-----VSVEDPVLDFEVNLLGGLNLLEACRQ---YGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKS  141 (311)
T ss_dssp             EEECCSCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHH---TTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCS
T ss_pred             EEECccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHH---hCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCC
Confidence            99999975321     12245677899999999999988753   2237999999972211       1      12456


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                      .|+.+|++.+.+++.++.+++  ++++.++||.+.++...
T Consensus       142 ~Y~~sK~~~e~~~~~~~~~~~--~~~~~lrp~~v~Gp~~~  179 (311)
T 2p5y_A          142 PYAASKAAFEHYLSVYGQSYG--LKWVSLRYGNVYGPRQD  179 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEECTTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHcC--CCEEEEeeccccCcCCC
Confidence            899999999999999998875  89999999999998643

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.81  E-value=1.7e-19  Score=162.65  Aligned_cols=172  Identities=13%  Similarity=0.018  Sum_probs=131.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ++.+.+++++++||||+|+||++++++|+++| ++|++++|+.....+..   .  ...++.++.+|++|.++++++++ 
T Consensus        25 ~~~~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l---~--~~~~v~~~~~Dl~d~~~l~~~~~-   98 (377)
T 2q1s_A           25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV---P--DHPAVRFSETSITDDALLASLQD-   98 (377)
T ss_dssp             -CCGGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGS---C--CCTTEEEECSCTTCHHHHHHCCS-
T ss_pred             CChHHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhc---c--CCCceEEEECCCCCHHHHHHHhh-
Confidence            34456788999999999999999999999999 99999999765421111   0  12358889999999988776653 


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-C-CEEEEEcCCCCC--------
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-K-GKIIVVASAAGW--------  188 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~-g~iv~isS~~~~--------  188 (287)
                            ++|++||+||.....     ...+++++.+++|+.++..+++++    .+. + +++|++||....        
T Consensus        99 ------~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~ll~a~----~~~~~~~~~V~~SS~~vyg~~~~~~~  163 (377)
T 2q1s_A           99 ------EYDYVFHLATYHGNQ-----SSIHDPLADHENNTLTTLKLYERL----KHFKRLKKVVYSAAGCSIAEKTFDDA  163 (377)
T ss_dssp             ------CCSEEEECCCCSCHH-----HHHHCHHHHHHHHTHHHHHHHHHH----TTCSSCCEEEEEEEC-----------
T ss_pred             ------CCCEEEECCCccCch-----hhhhCHHHHHHHHHHHHHHHHHHH----HHhCCCCeEEEeCCHHHcCCCCCCCc
Confidence                  789999999975321     112456778899999998888876    333 3 699999997532        


Q ss_pred             ----C----CC-CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          189 ----L----PP-PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       189 ----~----~~-~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                          .    +. .....|+.+|++.+.+++.++.+++  ++++.+.||.+.++..
T Consensus       164 ~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          164 KATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ--LPTVRARFQNVYGPGE  216 (377)
T ss_dssp             ---CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTTC
T ss_pred             CcccccccccccCCCCchHHHHHHHHHHHHHHHHHhC--CCEEEEeeccEECCCC
Confidence                1    22 3456899999999999999998875  8899999999998764

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.81  E-value=2.7e-20  Score=165.15  Aligned_cols=213  Identities=13%  Similarity=0.048  Sum_probs=140.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH--HHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA--DQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|+++||||+|+||++++++|+++|++|+++.|+.+..++..  ..+. . ..++.++.+|++|.++++++++       
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~d~~~~~~~~~-------   79 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E-LGDLKIFRADLTDELSFEAPIA-------   79 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G-GSCEEEEECCTTTSSSSHHHHT-------
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C-CCcEEEEecCCCChHHHHHHHc-------
Confidence            688999999999999999999999999999888765322111  1121 1 1357888999999988877764       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC---------CC----
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL---------PP----  191 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~---------~~----  191 (287)
                      ++|++||+|+....      ...+..++.+++|+.++..+++++.+..  +.+++|++||..+.+         +.    
T Consensus        80 ~~D~Vih~A~~~~~------~~~~~~~~~~~~nv~gt~~ll~aa~~~~--~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~  151 (338)
T 2rh8_A           80 GCDFVFHVATPVHF------ASEDPENDMIKPAIQGVVNVMKACTRAK--SVKRVILTSSAAAVTINQLDGTGLVVDEKN  151 (338)
T ss_dssp             TCSEEEEESSCCCC---------------CHHHHHHHHHHHHHHHHCT--TCCEEEEECCHHHHHHHHHTCSCCCCCTTT
T ss_pred             CCCEEEEeCCccCC------CCCCcHHHHHHHHHHHHHHHHHHHHHcC--CcCEEEEEecHHHeecCCcCCCCcccChhh
Confidence            57999999986421      1112224588999999999999886532  136999999976321         00    


Q ss_pred             --------C---CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCC----ccchHHHHh---
Q 042560          192 --------P---RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGK----LEVDQEIRD---  253 (287)
Q Consensus       192 --------~---~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~----~~~~~~~~~---  253 (287)
                              +   ....|+.||++.+.+++.++.+++  +++++++||.+.++............    .........   
T Consensus       152 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~  229 (338)
T 2rh8_A          152 WTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENN--IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMK  229 (338)
T ss_dssp             TTCC-------CCCCCCTTSCCHHHHHHHHHHHHHT--CCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccchhhccccCCccchHHHHHHHHHHHHHHHHHHcC--CcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccccccc
Confidence                    0   112599999999999988887654  89999999999998654211000000    000000000   


Q ss_pred             hh---hcCCCCCCHHHHHHHHHHhhccC
Q 042560          254 VQ---ISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       254 ~~---~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ..   .....+..++|+|++++++++++
T Consensus       230 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~  257 (338)
T 2rh8_A          230 GMQMLSGSVSIAHVEDVCRAHIFVAEKE  257 (338)
T ss_dssp             HHHHHHSSEEEEEHHHHHHHHHHHHHCT
T ss_pred             ccccccCcccEEEHHHHHHHHHHHHcCC
Confidence            00   00113456999999999999753

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.80  E-value=7.3e-19  Score=157.81  Aligned_cols=172  Identities=16%  Similarity=0.056  Sum_probs=123.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +|+++||||+|+||++++++|+++|++|++++|+..... +..+.+...   .+.++.++.+|++|.+++.++++..   
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   77 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV---   77 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc---
Confidence            368999999999999999999999999999999865421 111111110   1235888999999999999888765   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------C
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------P  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~  191 (287)
                        ++|++|||||.....     .+.+++.+.+++|+.++..+++++.+...++++++|++||.....+           .
T Consensus        78 --~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~  150 (372)
T 1db3_A           78 --QPDEVYNLGAMSHVA-----VSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF  150 (372)
T ss_dssp             --CCSEEEECCCCCTTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC
T ss_pred             --CCCEEEECCcccCcc-----ccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC
Confidence              689999999975432     2335677889999999999999987754333379999999754321           2


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCccc
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIE  230 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~  230 (287)
                      .....|+.+|++.+.+++.++.+++  +.+..+.|..+.
T Consensus       151 ~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~r~~~~~  187 (372)
T 1db3_A          151 YPRSPYAVAKLYAYWITVNYRESYG--MYACNGILFNHE  187 (372)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhC--CCeEEEEECCcc
Confidence            2367899999999999999999876  334444444443

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.80  E-value=1.4e-19  Score=162.66  Aligned_cols=213  Identities=13%  Similarity=0.115  Sum_probs=149.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC-CHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVS-KVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~v~~~~~~~  119 (287)
                      ..++++++++||||+|+||.+++++|+++ |++|++++|+.++.++..+      ..++.++.+|++ |.+.++++++  
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~------~~~v~~~~~Dl~~d~~~~~~~~~--   90 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK------HERMHFFEGDITINKEWVEYHVK--   90 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG------STTEEEEECCTTTCHHHHHHHHH--
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc------CCCeEEEeCccCCCHHHHHHHhc--
Confidence            34457789999999999999999999999 9999999998765443221      135889999999 9998888775  


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC--------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP--------  191 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~--------  191 (287)
                           ++|++||+||......     ..++..+.+++|+.++..+++++...    ++++|++||.......        
T Consensus        91 -----~~d~Vih~A~~~~~~~-----~~~~~~~~~~~nv~~~~~ll~a~~~~----~~~~v~~SS~~vyg~~~~~~~~e~  156 (372)
T 3slg_A           91 -----KCDVILPLVAIATPAT-----YVKQPLRVFELDFEANLPIVRSAVKY----GKHLVFPSTSEVYGMCADEQFDPD  156 (372)
T ss_dssp             -----HCSEEEECBCCCCHHH-----HHHCHHHHHHHHTTTTHHHHHHHHHH----TCEEEEECCGGGGBSCCCSSBCTT
T ss_pred             -----cCCEEEEcCccccHHH-----HhhCHHHHHHHHHHHHHHHHHHHHHh----CCcEEEeCcHHHhCCCCCCCCCcc
Confidence                 5899999999764321     11345567899999998888887543    2699999995432110        


Q ss_pred             ----------CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC--
Q 042560          192 ----------PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL--  259 (287)
Q Consensus       192 ----------~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  259 (287)
                                .....|+.+|.+.+.+++.++.+   .+++..+.|+.+..+.....+............+........  
T Consensus       157 ~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~---g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (372)
T 3slg_A          157 ASALTYGPINKPRWIYACSKQLMDRVIWGYGME---GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENI  233 (372)
T ss_dssp             TCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT---TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCE
T ss_pred             ccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC---CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCc
Confidence                      22347999999999999999877   389999999999888654322211111111222222222111  


Q ss_pred             ----------CCCCHHHHHHHHHHhhccCC
Q 042560          260 ----------PVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       260 ----------~~~~p~evA~~i~~l~~~~~  279 (287)
                                .+...+|+|++++.++..+.
T Consensus       234 ~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~  263 (372)
T 3slg_A          234 SLVDGGSQKRAFTYVDDGISALMKIIENSN  263 (372)
T ss_dssp             EEGGGGCCEEECEEHHHHHHHHHHHHHCGG
T ss_pred             EEeCCCceEEEEEEHHHHHHHHHHHHhccc
Confidence                      12248999999999998653

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.80  E-value=3.9e-19  Score=157.80  Aligned_cols=208  Identities=13%  Similarity=0.066  Sum_probs=143.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~~~  125 (287)
                      ++++||||+|+||++++++|+++ |++|++++|+..+.++..      ...++.++.+|++|. +.++++++       +
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~-------~   67 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL------NHPHFHFVEGDISIHSEWIEYHVK-------K   67 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT------TCTTEEEEECCTTTCSHHHHHHHH-------H
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh------cCCCeEEEeccccCcHHHHHhhcc-------C
Confidence            46999999999999999999998 899999999876643221      123588899999984 55666554       4


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC-------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP-------------  192 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~-------------  192 (287)
                      +|++||+||......     ..+++.+.+++|+.++..+++++.+    .++++|++||.......+             
T Consensus        68 ~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~  138 (345)
T 2bll_A           68 CDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLRIIRYCVK----YRKRIIFPSTSEVYGMCSDKYFDEDHSNLIV  138 (345)
T ss_dssp             CSEEEECBCCCCHHH-----HHHSHHHHHHHHTHHHHHHHHHHHH----TTCEEEEECCGGGGBTCCCSSBCTTTCCCBC
T ss_pred             CCEEEEcccccCccc-----hhcCHHHHHHHHHHHHHHHHHHHHH----hCCeEEEEecHHHcCCCCCCCcCCccccccc
Confidence            799999999754221     1134567889999999888887754    237999999965432111             


Q ss_pred             -----CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC--------
Q 042560          193 -----RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL--------  259 (287)
Q Consensus       193 -----~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  259 (287)
                           ....|+.+|++.+.+++.++.+++  ++++.++||.+.++..................+........        
T Consensus       139 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  216 (345)
T 2bll_A          139 GPVNKPRWIYSVSKQLLDRVIWAYGEKEG--LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGG  216 (345)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGS
T ss_pred             CcccCcccccHHHHHHHHHHHHHHHHhcC--CCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCC
Confidence                 123799999999999999998875  88999999999887643211000000001112222111111        


Q ss_pred             ----CCCCHHHHHHHHHHhhccCC
Q 042560          260 ----PVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       260 ----~~~~p~evA~~i~~l~~~~~  279 (287)
                          .+..++|+|++++.+++++.
T Consensus       217 ~~~~~~i~v~Dva~a~~~~~~~~~  240 (345)
T 2bll_A          217 KQKRCFTDIRDGIEALYRIIENAG  240 (345)
T ss_dssp             CCEEECEEHHHHHHHHHHHHHCGG
T ss_pred             CEEEEEEEHHHHHHHHHHHHhhcc
Confidence                12259999999999997653

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.80  E-value=5.8e-19  Score=159.19  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-----HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+++||||+|+||.+++++|+++|++|++++|+...     ++...+.....+..++.++.+|++|.+++.++++.+   
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---  105 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI---  105 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH---
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc---
Confidence            789999999999999999999999999999997653     222211111111115788999999999998888765   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCCC----------C
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ--TKGKIIVVASAAGWL----------P  190 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~--~~g~iv~isS~~~~~----------~  190 (287)
                        ++|++||+||.....     .+.++++..+++|+.++..+++++.+...+  +++++|++||.....          +
T Consensus       106 --~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~  178 (381)
T 1n7h_A          106 --KPDEVYNLAAQSHVA-----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTP  178 (381)
T ss_dssp             --CCSEEEECCSCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSC
T ss_pred             --CCCEEEECCcccCcc-----ccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCC
Confidence              689999999975431     112456788999999999999999987644  246999999976432          2


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhC
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~  216 (287)
                      ......|+.+|++.+.+++.++.+++
T Consensus       179 ~~~~~~Y~~sK~~~E~~~~~~~~~~~  204 (381)
T 1n7h_A          179 FHPRSPYAASKCAAHWYTVNYREAYG  204 (381)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhC
Confidence            34467899999999999999999876

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.80  E-value=1.7e-19  Score=159.97  Aligned_cols=199  Identities=17%  Similarity=0.041  Sum_probs=136.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..+++++++||||+|+||++++++|+++|++|++++|+.....+...   ..  .++.++.+|++|.++++++++.    
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~---~~--~~~~~~~~Dl~d~~~~~~~~~~----   87 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK---DH--PNLTFVEGSIADHALVNQLIGD----   87 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC---CC--TTEEEEECCTTCHHHHHHHHHH----
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHh---hc--CCceEEEEeCCCHHHHHHHHhc----
Confidence            34567899999999999999999999999999999997543211110   00  2578899999999999888764    


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC----C--------
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL----P--------  190 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~----~--------  190 (287)
                       +++|++|||||.....      +.++++  +++|+.++..+++++.+   .+.+++|++||.....    .        
T Consensus        88 -~~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~---~~~~~iV~~SS~~~~g~~~~~~~~~~~E~  155 (333)
T 2q1w_A           88 -LQPDAVVHTAASYKDP------DDWYND--TLTNCVGGSNVVQAAKK---NNVGRFVYFQTALCYGVKPIQQPVRLDHP  155 (333)
T ss_dssp             -HCCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHH---TTCSEEEEEEEGGGGCSCCCSSSBCTTSC
T ss_pred             -cCCcEEEECceecCCC------ccCChH--HHHHHHHHHHHHHHHHH---hCCCEEEEECcHHHhCCCcccCCCCcCCC
Confidence             2699999999976432      112333  89999999999998865   2347999999966542    1        


Q ss_pred             -CCCChhhhhhHHHHHHHHHH-HHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---------cCC
Q 042560          191 -PPRMSFYNASKAAKIALYET-LRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---------SLL  259 (287)
Q Consensus       191 -~~~~~~Y~asKaal~~~~~~-la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  259 (287)
                       .|....|+.+|++.+.+++. ++       ++..+.|+.+..+....         .....+.+...         ...
T Consensus       156 ~~p~~~~Y~~sK~~~E~~~~~s~~-------~~~ilR~~~v~gp~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  219 (333)
T 2q1w_A          156 RNPANSSYAISKSANEDYLEYSGL-------DFVTFRLANVVGPRNVS---------GPLPIFFQRLSEGKKCFVTKARR  219 (333)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHTC-------CEEEEEESEEESTTCCS---------SHHHHHHHHHHTTCCCEEEECEE
T ss_pred             CCCCCCchHHHHHHHHHHHHhhhC-------CeEEEeeceEECcCCcC---------cHHHHHHHHHHcCCeeeCCCceE
Confidence             23227899999999999887 65       34556666655543100         00111111110         111


Q ss_pred             CCCCHHHHHHHHHHhhccC
Q 042560          260 PVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       260 ~~~~p~evA~~i~~l~~~~  278 (287)
                      .+..++|+|++++++++++
T Consensus       220 ~~i~v~Dva~ai~~~~~~~  238 (333)
T 2q1w_A          220 DFVFVKDLARATVRAVDGV  238 (333)
T ss_dssp             CEEEHHHHHHHHHHHHTTC
T ss_pred             eeEEHHHHHHHHHHHHhcC
Confidence            2335999999999999865

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.80  E-value=4.8e-19  Score=156.99  Aligned_cols=202  Identities=14%  Similarity=0.118  Sum_probs=145.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHc---C---CeEEEEeCChhH--HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARR---R---ARLVLVARRERQ--LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~---G---~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++||||+|+||++++++|+++   |   ++|++++|+...  .+.. +.+.  ...++.++.+|++|.+++++++    
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~----   74 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APVD--ADPRLRFVHGDIRDAGLLAREL----   74 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGGT--TCTTEEEEECCTTCHHHHHHHT----
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhh-hhcc--cCCCeEEEEcCCCCHHHHHHHh----
Confidence            5999999999999999999997   8   999999986421  1111 1111  1235888999999998887776    


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------  189 (287)
                         +++|++||+||.....     .+.+++++.+++|+.++..+++++.+.   ..+++|++||.....           
T Consensus        75 ---~~~d~Vih~A~~~~~~-----~~~~~~~~~~~~Nv~~~~~l~~a~~~~---~~~~~v~~SS~~vyg~~~~~~~~E~~  143 (337)
T 1r6d_A           75 ---RGVDAIVHFAAESHVD-----RSIAGASVFTETNVQGTQTLLQCAVDA---GVGRVVHVSTNQVYGSIDSGSWTESS  143 (337)
T ss_dssp             ---TTCCEEEECCSCCCHH-----HHHHCCHHHHHHHTHHHHHHHHHHHHT---TCCEEEEEEEGGGGCCCSSSCBCTTS
T ss_pred             ---cCCCEEEECCCccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEecchHHhCCCCCCCCCCCC
Confidence               4799999999975321     112456778999999999999988664   236999999964321           


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----------
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----------  259 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  259 (287)
                      +......|+.+|++.+.+++.++.+++  ++++.++||.+.++.....        .....+........          
T Consensus       144 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g--~~~~ilrp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T 1r6d_A          144 PLEPNSPYAASKAGSDLVARAYHRTYG--LDVRITRCCNNYGPYQHPE--------KLIPLFVTNLLDGGTLPLYGDGAN  213 (337)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEECTTCCTT--------SHHHHHHHHHHTTCCEEEETTSCC
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHC--CCEEEEEeeeeECCCCCCC--------ChHHHHHHHHhcCCCcEEeCCCCe
Confidence            234567899999999999999998875  8899999999998864310        00111222111111          


Q ss_pred             --CCCCHHHHHHHHHHhhccC
Q 042560          260 --PVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       260 --~~~~p~evA~~i~~l~~~~  278 (287)
                        .+..++|+|++++.+++++
T Consensus       214 ~~~~i~v~Dva~a~~~~~~~~  234 (337)
T 1r6d_A          214 VREWVHTDDHCRGIALVLAGG  234 (337)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHC
T ss_pred             eEeeEeHHHHHHHHHHHHhCC
Confidence              1124899999999998754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.80  E-value=3.7e-19  Score=156.29  Aligned_cols=189  Identities=15%  Similarity=0.081  Sum_probs=110.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++||||+|+||++++++|+++|++|++++|+...           .  .  ++.+|++|.+++.++++..     ++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~--~--~~~~Dl~d~~~~~~~~~~~-----~~   61 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------P--K--FEQVNLLDSNAVHHIIHDF-----QP   61 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------------CHHHHHHH-----CC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------C--C--eEEecCCCHHHHHHHHHhh-----CC
Confidence            6789999999999999999999999999999986543           0  1  5778999999988887654     68


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC----------CCCChh
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP----------PPRMSF  196 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~----------~~~~~~  196 (287)
                      |++||+||.....     .+.+++++.+++|+.++..+++++.+.    ++++|++||.....+          ......
T Consensus        62 d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~v~~SS~~v~~~~~~~~~E~~~~~~~~~  132 (315)
T 2ydy_A           62 HVIVHCAAERRPD-----VVENQPDAASQLNVDASGNLAKEAAAV----GAFLIYISSDYVFDGTNPPYREEDIPAPLNL  132 (315)
T ss_dssp             SEEEECC------------------------CHHHHHHHHHHHHH----TCEEEEEEEGGGSCSSSCSBCTTSCCCCCSH
T ss_pred             CEEEECCcccChh-----hhhcCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEchHHHcCCCCCCCCCCCCCCCcCH
Confidence            9999999975432     123567789999999999999998762    359999999875433          344678


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCC---CcCCcccCcCCCccchHHHH-hh----h--hcCCCCCCHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESE---ITGGKFLNKNGKLEVDQEIR-DV----Q--ISLLPVQPTE  265 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~---~~~~~~~~~~~~~~~~~~~~-~~----~--~~~~~~~~p~  265 (287)
                      |+.+|++.+.+++.++.++  . +|.+.|. |+.+++   +...+          ..... +.    .  .....+..++
T Consensus       133 Y~~sK~~~e~~~~~~~~~~--~~lR~~~v~-G~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~v~  199 (315)
T 2ydy_A          133 YGKTKLDGEKAVLENNLGA--AVLRIPILY-GEVEKLEESAVTVM----------FDKVQFSNKSANMDHWQQRFPTHVK  199 (315)
T ss_dssp             HHHHHHHHHHHHHHHCTTC--EEEEECSEE-CSCSSGGGSTTGGG----------HHHHHCCSSCEEEECSSBBCCEEHH
T ss_pred             HHHHHHHHHHHHHHhCCCe--EEEeeeeee-CCCCcccccHHHHH----------HHHHHhcCCCeeeccCceECcEEHH
Confidence            9999999999998875322  2 5555555 544441   11110          00000 00    0  0112233599


Q ss_pred             HHHHHHHHhhcc
Q 042560          266 ECAKAIVNSACR  277 (287)
Q Consensus       266 evA~~i~~l~~~  277 (287)
                      |+|+++++++++
T Consensus       200 Dva~a~~~~~~~  211 (315)
T 2ydy_A          200 DVATVCRQLAEK  211 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999864

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.80  E-value=1.5e-18  Score=153.84  Aligned_cols=170  Identities=19%  Similarity=0.169  Sum_probs=122.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|......+..+.+....+.++.++.+|++|.++++++++.     .++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-----~~~D~   76 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD-----HAIDT   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH-----TTCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhc-----cCCCE
Confidence            6899999999999999999999999999986432111111222211123578889999999998888764     26999


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CC-CCChh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PP-PRMSF  196 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~-~~~~~  196 (287)
                      +|||||......     ..+.+.+.+++|+.++..+++++..   .+.+++|++||.....           +. +....
T Consensus        77 vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~  148 (338)
T 1udb_A           77 VIHFAGLKAVGE-----SVQKPLEYYDNNVNGTLRLISAMRA---ANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSP  148 (338)
T ss_dssp             EEECCSCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSH
T ss_pred             EEECCccCcccc-----chhcHHHHHHHHHHHHHHHHHHHHh---cCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCCh
Confidence            999999753221     1134556789999999988876533   2347999999975431           11 23678


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      |+.+|++++.+++.++.++ +.+++..+.|+.+..+
T Consensus       149 Y~~sK~~~e~~~~~~~~~~-~~~~~~ilR~~~v~G~  183 (338)
T 1udb_A          149 YGKSKLMVEQILTDLQKAQ-PDWSIALLRYFNPVGA  183 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-TTCEEEEEEECEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCceEEEeeceecCC
Confidence            9999999999999999886 2377777877666544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.79  E-value=1.2e-18  Score=152.93  Aligned_cols=196  Identities=16%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||++++++|+++|..|++..|+....+..        ...+.++.+|++| +++.++++       ++|
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~--------~~~~~~~~~Dl~~-~~~~~~~~-------~~d   65 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV--------NEAARLVKADLAA-DDIKDYLK-------GAE   65 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS--------CTTEEEECCCTTT-SCCHHHHT-------TCS
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc--------CCCcEEEECcCCh-HHHHHHhc-------CCC
Confidence            4699999999999999999999995444444443322111        2358889999999 88777664       789


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----------CCCCCChh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----------LPPPRMSF  196 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----------~~~~~~~~  196 (287)
                      ++||+|+.....     .+.+++++.+++|+.++..+++++..   .+.+++|++||....           .+......
T Consensus        66 ~vih~a~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~~~~~---~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~  137 (313)
T 3ehe_A           66 EVWHIAANPDVR-----IGAENPDEIYRNNVLATYRLLEAMRK---AGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISL  137 (313)
T ss_dssp             EEEECCCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSH
T ss_pred             EEEECCCCCChh-----hhhhCHHHHHHHHHHHHHHHHHHHHH---cCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCH
Confidence            999999964321     23467888999999999999888543   234799999997643           23345678


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC-------------CCCCC
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL-------------LPVQP  263 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  263 (287)
                      |+.+|++.+.+++.++.+++  ++++.+.|+.+.++.....         ....+.......             ..+..
T Consensus       138 Y~~sK~~~e~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~  206 (313)
T 3ehe_A          138 YGASKLACEALIESYCHTFD--MQAWIYRFANVIGRRSTHG---------VIYDFIMKLKRNPEELEILGNGEQNKSYIY  206 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--CEEEEEECSCEESTTCCCS---------HHHHHHHHHHHCTTEEEESTTSCCEECCEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC--CCEEEEeeccccCcCCCcC---------hHHHHHHHHHcCCCceEEeCCCCeEEeEEE
Confidence            99999999999999999885  8999999999988753310         011111111110             11224


Q ss_pred             HHHHHHHHHHhhccC
Q 042560          264 TEECAKAIVNSACRG  278 (287)
Q Consensus       264 p~evA~~i~~l~~~~  278 (287)
                      .+|+|++++.++++.
T Consensus       207 v~Dva~a~~~~~~~~  221 (313)
T 3ehe_A          207 ISDCVDAMLFGLRGD  221 (313)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhccC
Confidence            899999999999843

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.79  E-value=1.6e-19  Score=161.47  Aligned_cols=209  Identities=13%  Similarity=0.052  Sum_probs=143.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++++++||||+|+||.+++++|+++| ++|++++|+....+     .....  .+. +.+|++|.+.++++++.  .
T Consensus        42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----~~~~~--~~~-~~~d~~~~~~~~~~~~~--~  111 (357)
T 2x6t_A           42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-----FVNLV--DLN-IADYMDKEDFLIQIMAG--E  111 (357)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-----GGGTT--TSC-CSEEEEHHHHHHHHHTT--C
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-----hhccc--Cce-EeeecCcHHHHHHHHhh--c
Confidence            44678899999999999999999999999 89999999765421     00111  122 67899998888777653  1


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC---------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP---------  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~---------  192 (287)
                      .++++|++||+||....       ..+++++.+++|+.++..+++++.+.   +. ++|++||.....+.+         
T Consensus       112 ~~~~~d~Vih~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~a~~~~---~~-r~V~~SS~~v~g~~~~~~~~E~~~  180 (357)
T 2x6t_A          112 EFGDVEAIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER---EI-PFLYASSAATYGGRTSDFIESREY  180 (357)
T ss_dssp             CCSSCCEEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH---TC-CEEEEEEGGGGCSCSSCCCSSGGG
T ss_pred             ccCCCCEEEECCcccCC-------ccCCHHHHHHHHHHHHHHHHHHHHHc---CC-eEEEEcchHHhCCCCCCCcCCcCC
Confidence            24579999999997543       22567788999999999999988762   34 899999976543222         


Q ss_pred             --CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-------------
Q 042560          193 --RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-------------  257 (287)
Q Consensus       193 --~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  257 (287)
                        ....|+.+|++.+.+++.++.+++  ++++.+.||.+.++....... ..   .....+.+....             
T Consensus       181 ~~p~~~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~Gp~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~  254 (357)
T 2x6t_A          181 EKPLNVFGYSKFLFDEYVRQILPEAN--SQIVGFRYFNVYGPREGHKGS-MA---SVAFHLNTQLNNGESPKLFEGSENF  254 (357)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHGGGCS--SCEEEEEECEEESSSCTTCGG-GS---CHHHHHHHHHHTTCCCEEETTGGGC
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHcC--CCEEEEecCeEECCCCCCCcc-cc---hHHHHHHHHHHcCCCcEEeCCCCcc
Confidence              256899999999999999988754  889999999998875321000 00   001111111111             


Q ss_pred             CCCCCCHHHHHHHHHHhhccC
Q 042560          258 LLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       258 ~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ...+..++|+|++++.+++++
T Consensus       255 ~~~~i~v~Dva~ai~~~~~~~  275 (357)
T 2x6t_A          255 KRDFVYVGDVADVNLWFLENG  275 (357)
T ss_dssp             EECEEEHHHHHHHHHHHHHHC
T ss_pred             eEccEEHHHHHHHHHHHHhcC
Confidence            112235899999999999764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.79  E-value=3.6e-19  Score=160.27  Aligned_cols=173  Identities=13%  Similarity=-0.002  Sum_probs=128.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-----HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+++||||+|+||++++++|+++|++|++++|+...     ++...+........++.++.+|++|.+++.++++..   
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---  101 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV---  101 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH---
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc---
Confidence            789999999999999999999999999999997543     222111111001235888999999999998888765   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PP  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~  191 (287)
                        ++|++|||||......     +.+++++.+++|+.++..+++++.+...++++++|++||.....           +.
T Consensus       102 --~~d~vih~A~~~~~~~-----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~  174 (375)
T 1t2a_A          102 --KPTEIYNLGAQSHVKI-----SFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF  174 (375)
T ss_dssp             --CCSEEEECCSCCCHHH-----HHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC
T ss_pred             --CCCEEEECCCcccccc-----cccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC
Confidence              6899999999753211     12456778999999999999998775432237999999976543           12


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .....|+.+|++.+.+++.++.+++  +.+..+.|+.+..+
T Consensus       175 ~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~i~r~~~~~gp  213 (375)
T 1t2a_A          175 YPRSPYGAAKLYAYWIVVNFREAYN--LFAVNGILFNHESP  213 (375)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECT
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhC--CCEEEEecccccCC
Confidence            2456899999999999999999876  56666676655544

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.79  E-value=3e-18  Score=151.34  Aligned_cols=165  Identities=14%  Similarity=0.098  Sum_probs=128.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||++++++|+++|++|++++|+.....+   .   .. .++.++.+|++|.+++++++++     .++|
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~---~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~d   69 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED---A---IT-EGAKFYNGDLRDKAFLRDVFTQ-----ENIE   69 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---G---SC-TTSEEEECCTTCHHHHHHHHHH-----SCEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh---h---cC-CCcEEEECCCCCHHHHHHHHhh-----cCCC
Confidence            579999999999999999999999999999987543221   1   11 2478899999999998888764     4799


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CCCCChh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PPPRMSF  196 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~~~~~~  196 (287)
                      ++||+||......     +.+++++.+++|+.++..+++++..   .+.+++|++||.....           +......
T Consensus        70 ~vih~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~a~~~---~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~  141 (330)
T 2c20_A           70 AVMHFAADSLVGV-----SMEKPLQYYNNNVYGALCLLEVMDE---FKVDKFIFSSTAATYGEVDVDLITEETMTNPTNT  141 (330)
T ss_dssp             EEEECCCCCCHHH-----HHHSHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSH
T ss_pred             EEEECCcccCccc-----cccCHHHHHHHHhHHHHHHHHHHHH---cCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCCh
Confidence            9999999754321     1245677889999999988887643   2237999999965432           1123578


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      |+.+|++.+.+++.++.+++  ++++.+.||.+..+..
T Consensus       142 Y~~sK~~~e~~~~~~~~~~~--~~~~ilrp~~v~G~~~  177 (330)
T 2c20_A          142 YGETKLAIEKMLHWYSQASN--LRYKIFRYFNVAGATP  177 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTSS--CEEEEEECSEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CcEEEEecCcccCCCC
Confidence            99999999999999998764  8999999999988753

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.78  E-value=4.8e-20  Score=153.00  Aligned_cols=191  Identities=15%  Similarity=0.062  Sum_probs=137.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++++||||+|+||++++++|+++|+  +|++++|+..+         .  ..++.++.+|++|.+++++++       
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~--~~~~~~~~~D~~~~~~~~~~~-------   65 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------E--HPRLDNPVGPLAELLPQLDGS-------   65 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------C--CTTEECCBSCHHHHGGGCCSC-------
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------c--CCCceEEeccccCHHHHHHhh-------
Confidence            578999999999999999999999998  99999998764         0  125778889998887765543       


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                        +|++|||+|....       +.+++++.+++|+.++..+++++.+.   +.+++|++||.....+  ....|+.+|++
T Consensus        66 --~d~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~v~~Ss~~~~~~--~~~~y~~sK~~  131 (215)
T 2a35_A           66 --IDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM---GARHYLVVSALGADAK--SSIFYNRVKGE  131 (215)
T ss_dssp             --CSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT---TCCEEEEECCTTCCTT--CSSHHHHHHHH
T ss_pred             --hcEEEECeeeccc-------cCCCHHHHHHhhHHHHHHHHHHHHHc---CCCEEEEECCcccCCC--CccHHHHHHHH
Confidence              8999999997432       12556778899999998888886442   2368999999877532  35689999999


Q ss_pred             HHHHHHHHHHHhCCCeE-EEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGDIG-ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~-v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ++.+++.+      .++ ++.++||.+.++.....+...-.... . ....   .......++|+|++++.++.++.
T Consensus       132 ~e~~~~~~------~~~~~~~vrp~~v~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~i~~~Dva~~~~~~~~~~~  197 (215)
T 2a35_A          132 LEQALQEQ------GWPQLTIARPSLLFGPREEFRLAEILAAPI-A-RILP---GKYHGIEACDLARALWRLALEEG  197 (215)
T ss_dssp             HHHHHTTS------CCSEEEEEECCSEESTTSCEEGGGGTTCCC-C--------CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHc------CCCeEEEEeCceeeCCCCcchHHHHHHHhh-h-hccC---CCcCcEeHHHHHHHHHHHHhcCC
Confidence            99987642      387 99999999998854311100000000 0 0000   00012248999999999998753

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.77  E-value=1.8e-17  Score=154.07  Aligned_cols=173  Identities=19%  Similarity=0.172  Sum_probs=128.7

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHc---CCeEEEEeCChhHHHHHHHH--------------HHhcCCCeeEEE
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARR---RARLVLVARRERQLREVADQ--------------AELMGSPFALAI  102 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~---G~~vv~~~r~~~~~~~~~~~--------------~~~~~~~~~~~~  102 (287)
                      ......++++++||||+|+||.+++++|+++   |++|++++|+....+.....              +......++.++
T Consensus        66 ~~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v  145 (478)
T 4dqv_A           66 LPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVV  145 (478)
T ss_dssp             SCCCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEE
T ss_pred             CCCCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEE
Confidence            3445668999999999999999999999999   99999999987654322211              111112469999


Q ss_pred             eecCC------CHHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC
Q 042560          103 PADVS------KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK  176 (287)
Q Consensus       103 ~~D~~------~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~  176 (287)
                      .+|++      |.++++++++       ++|++|||||....         +.+++.+++|+.++..+++.+..   .+.
T Consensus       146 ~~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~---------~~~~~~~~~Nv~gt~~ll~aa~~---~~~  206 (478)
T 4dqv_A          146 AGDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA---------FPYHELFGPNVAGTAELIRIALT---TKL  206 (478)
T ss_dssp             ECCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB---------SSCCEEHHHHHHHHHHHHHHHTS---SSC
T ss_pred             EeECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC---------cCHHHHHHHHHHHHHHHHHHHHh---CCC
Confidence            99998      5556665554       58999999998542         44567889999999888887632   222


Q ss_pred             CEEEEEcCCCCCCCCCC----------------------ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          177 GKIIVVASAAGWLPPPR----------------------MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       177 g~iv~isS~~~~~~~~~----------------------~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      +++|++||.........                      ...|+.+|.+.+.+++.++.+.+  ++++.+.||.+..+-
T Consensus       207 ~~~V~iSS~~v~~~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ivRpg~v~G~~  283 (478)
T 4dqv_A          207 KPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCA--LPVAVFRCGMILADT  283 (478)
T ss_dssp             CCEEEEEEGGGGTTSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEECCS
T ss_pred             CeEEEEeehhhcCccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhC--CCeEEEECceeeCCC
Confidence            69999999643221110                      13499999999999999998775  889999999998763

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.77  E-value=3.4e-18  Score=151.30  Aligned_cols=172  Identities=12%  Similarity=-0.019  Sum_probs=128.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++++++||||+|+||++++++|+++|++|++++|+..... ...+.+.  ....+.++.+|++|.++++++++..    
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~----   85 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKA----   85 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHH----
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc--ccCceEEEECCCCCHHHHHHHHHHc----
Confidence            35788999999999999999999999999999999765421 1111111  1235888999999999998888754    


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCC-----------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPP-----------  191 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~-----------  191 (287)
                       ++|++||+||.....     ...+++.+.+++|+.++..+++++.+.   + .+++|++||.....+.           
T Consensus        86 -~~d~Vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~~v~~SS~~v~g~~~~~~~~E~~~~  156 (335)
T 1rpn_A           86 -QPQEVYNLAAQSFVG-----ASWNQPVTTGVVDGLGVTHLLEAIRQF---SPETRFYQASTSEMFGLIQAERQDENTPF  156 (335)
T ss_dssp             -CCSEEEECCSCCCHH-----HHTTSHHHHHHHHTHHHHHHHHHHHHH---CTTSEEEEEEEGGGGCSCSSSSBCTTSCC
T ss_pred             -CCCEEEECccccchh-----hhhhChHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEeCHHHhCCCCCCCCCcccCC
Confidence             689999999964321     112556788999999999999988653   2 3699999996543221           


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      .....|+.+|++.+.+++.++.+++  +.+..+.|+.+..+.
T Consensus       157 ~p~~~Y~~sK~~~e~~~~~~~~~~~--~~~~i~r~~~v~Gp~  196 (335)
T 1rpn_A          157 YPRSPYGVAKLYGHWITVNYRESFG--LHASSGILFNHESPL  196 (335)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTT
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcC--CcEEEEeeCcccCCC
Confidence            2246899999999999999998876  666678887776653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.77  E-value=3.1e-18  Score=152.33  Aligned_cols=208  Identities=13%  Similarity=0.083  Sum_probs=140.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++...+++++++||||+|+||++++++|+++|++|++++|+.....+..+.+  ....++.++.+|+.+..         
T Consensus        20 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~---------   88 (343)
T 2b69_A           20 QGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--IGHENFELINHDVVEPL---------   88 (343)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG--TTCTTEEEEECCTTSCC---------
T ss_pred             ccccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh--ccCCceEEEeCccCChh---------
Confidence            4445567899999999999999999999999999999998643211111111  11235888999998752         


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC----------
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL----------  189 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~----------  189 (287)
                         ..++|++||+||......     ..+++.+.+++|+.++..+++++.+.    +.++|++||.....          
T Consensus        89 ---~~~~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~v~~SS~~v~g~~~~~~~~E~  156 (343)
T 2b69_A           89 ---YIEVDQIYHLASPASPPN-----YMYNPIKTLKTNTIGTLNMLGLAKRV----GARLLLASTSEVYGDPEVHPQSED  156 (343)
T ss_dssp             ---CCCCSEEEECCSCCSHHH-----HTTCHHHHHHHHHHHHHHHHHHHHHH----TCEEEEEEEGGGGBSCSSSSBCTT
T ss_pred             ---hcCCCEEEECccccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHHh----CCcEEEECcHHHhCCCCCCCCccc
Confidence               357999999999754321     11445678899999999998887542    34999999865321          


Q ss_pred             ------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----
Q 042560          190 ------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----  259 (287)
Q Consensus       190 ------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  259 (287)
                            +......|+.+|++.+.+++.++.+++  ++++.+.||.+.++.....    ...  ....+........    
T Consensus       157 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilrp~~v~G~~~~~~----~~~--~~~~~~~~~~~~~~~~~  228 (343)
T 2b69_A          157 YWGHVNPIGPRACYDEGKRVAETMCYAYMKQEG--VEVRVARIFNTFGPRMHMN----DGR--VVSNFILQALQGEPLTV  228 (343)
T ss_dssp             CCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTTCCTT----CCC--HHHHHHHHHHHTCCEEE
T ss_pred             ccccCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEEcceeCcCCCCC----ccc--HHHHHHHHHHcCCCceE
Confidence                  223356799999999999999998875  8899999999988753210    000  0111111111111    


Q ss_pred             --------CCCCHHHHHHHHHHhhccC
Q 042560          260 --------PVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       260 --------~~~~p~evA~~i~~l~~~~  278 (287)
                              .+..++|+|++++.++..+
T Consensus       229 ~~~~~~~~~~v~v~Dva~a~~~~~~~~  255 (343)
T 2b69_A          229 YGSGSQTRAFQYVSDLVNGLVALMNSN  255 (343)
T ss_dssp             ESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred             cCCCCeEEeeEeHHHHHHHHHHHHhcC
Confidence                    1224899999999998754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.76  E-value=2e-18  Score=151.23  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=126.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++++||||+|+||.+++++|+++  |++|++++|+....+ .    ..    ++.++.+|++|.+++++++++.     
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~----~~----~~~~~~~D~~d~~~~~~~~~~~-----   67 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-V----VN----SGPFEVVNALDFNQIEHLVEVH-----   67 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-H----HH----SSCEEECCTTCHHHHHHHHHHT-----
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-c----cC----CCceEEecCCCHHHHHHHHhhc-----
Confidence            467999999999999999999999  899999999765521 1    11    3567889999999988887643     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC------------CC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP------------PP  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~------------~~  192 (287)
                      ++|++||+||.....      ..+++++.+++|+.++..+++++.+   .+.+++|++||.....+            ..
T Consensus        68 ~~d~vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~  138 (312)
T 2yy7_A           68 KITDIYLMAALLSAT------AEKNPAFAWDLNMNSLFHVLNLAKA---KKIKKIFWPSSIAVFGPTTPKENTPQYTIME  138 (312)
T ss_dssp             TCCEEEECCCCCHHH------HHHCHHHHHHHHHHHHHHHHHHHHT---TSCSEEECCEEGGGCCTTSCSSSBCSSCBCC
T ss_pred             CCCEEEECCccCCCc------hhhChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEeccHHHhCCCCCCCCccccCcCC
Confidence            689999999975321      1145567889999999888888743   22369999999765422            12


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      ....|+.+|.+.+.+++.++.+++  ++++.+.||.+..+.
T Consensus       139 ~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lrp~~v~g~~  177 (312)
T 2yy7_A          139 PSTVYGISKQAGERWCEYYHNIYG--VDVRSIRYPGLISWS  177 (312)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHC--CEEECEEECEEECSS
T ss_pred             CCchhHHHHHHHHHHHHHHHHhcC--CcEEEEeCCeEecCC
Confidence            356899999999999999998875  899999999998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.76  E-value=3.4e-17  Score=143.59  Aligned_cols=192  Identities=11%  Similarity=0.025  Sum_probs=140.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++||||+|+||++++++|+++|++|++++|+....+ . +        .+.++.+|++ .+++.++++       ++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~--------~~~~~~~Dl~-~~~~~~~~~-------~~   63 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I-N--------DYEYRVSDYT-LEDLINQLN-------DV   63 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------------CCEEEECCCC-HHHHHHHTT-------TC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C-C--------ceEEEEcccc-HHHHHHhhc-------CC
Confidence            378999999999999999999999999999999844322 1 1        4788999999 888877664       78


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCCh
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMS  195 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~  195 (287)
                      |++||+||.....         .+.+.+++|+.+...+++++..   .+.+++|++||.....+           .....
T Consensus        64 d~Vih~a~~~~~~---------~~~~~~~~n~~~~~~ll~a~~~---~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~  131 (311)
T 3m2p_A           64 DAVVHLAATRGSQ---------GKISEFHDNEILTQNLYDACYE---NNISNIVYASTISAYSDETSLPWNEKELPLPDL  131 (311)
T ss_dssp             SEEEECCCCCCSS---------SCGGGTHHHHHHHHHHHHHHHH---TTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSS
T ss_pred             CEEEEccccCCCC---------ChHHHHHHHHHHHHHHHHHHHH---cCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCc
Confidence            9999999975432         4456788999998888887643   22368999999544321           12356


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC------------CCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP------------VQP  263 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~  263 (287)
                      .|+.+|.+.+.+++.++.+.+  ++++.+.|+.+..+.....        .....+.+......+            +..
T Consensus       132 ~Y~~sK~~~E~~~~~~~~~~g--~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~  201 (311)
T 3m2p_A          132 MYGVSKLACEHIGNIYSRKKG--LCIKNLRFAHLYGFNEKNN--------YMINRFFRQAFHGEQLTLHANSVAKREFLY  201 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC--CEEEEEEECEEECSCC--C--------CHHHHHHHHHHTCCCEEESSBCCCCEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHcC--CCEEEEeeCceeCcCCCCC--------CHHHHHHHHHHcCCCeEEecCCCeEEceEE
Confidence            899999999999999998754  8999999999988754311        111222222221111            113


Q ss_pred             HHHHHHHHHHhhccC
Q 042560          264 TEECAKAIVNSACRG  278 (287)
Q Consensus       264 p~evA~~i~~l~~~~  278 (287)
                      .+|+|++++.+++++
T Consensus       202 v~Dva~a~~~~~~~~  216 (311)
T 3m2p_A          202 AKDAAKSVIYALKQE  216 (311)
T ss_dssp             HHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            899999999999876

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.76  E-value=2.3e-18  Score=166.18  Aligned_cols=211  Identities=13%  Similarity=0.084  Sum_probs=145.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHH-HHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVED-CKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-v~~~~~~~~~~  122 (287)
                      +++++++||||+|+||.+++++|+++ |++|++++|+....++..      ...++.++.+|++|.++ ++++++     
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~------~~~~v~~v~~Dl~d~~~~~~~~~~-----  381 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL------NHPHFHFVEGDISIHSEWIEYHVK-----  381 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT------TCTTEEEEECCTTTCHHHHHHHHH-----
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc------cCCceEEEECCCCCcHHHHHHhhc-----
Confidence            46789999999999999999999998 899999999876543211      12358889999998765 555543     


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----------
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-----------  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-----------  191 (287)
                        ++|++||+||......     ..+++.+.+++|+.++..+++++.+    .++++|++||.....+.           
T Consensus       382 --~~D~Vih~Aa~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~----~~~r~V~~SS~~vyg~~~~~~~~E~~~~  450 (660)
T 1z7e_A          382 --KCDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLRIIRYCVK----YRKRIIFPSTSEVYGMCSDKYFDEDHSN  450 (660)
T ss_dssp             --HCSEEEECCCCCCTHH-----HHHSHHHHHHHHTHHHHHHHHHHHH----TTCEEEEECCGGGGBTCCSSSBCTTTCC
T ss_pred             --CCCEEEECceecCccc-----cccCHHHHHHhhhHHHHHHHHHHHH----hCCEEEEEecHHHcCCCCCcccCCCccc
Confidence              5799999999754321     1134567889999999888888754    23799999996543211           


Q ss_pred             -------CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC----
Q 042560          192 -------PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP----  260 (287)
Q Consensus       192 -------~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  260 (287)
                             .....|+.+|.+.+.+++.++.+++  ++++.++||.+.++..................+........+    
T Consensus       451 ~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  528 (660)
T 1z7e_A          451 LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG--LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI  528 (660)
T ss_dssp             EEECCTTCTTHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE
T ss_pred             cccCcccCCCCCcHHHHHHHHHHHHHHHHHcC--CCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe
Confidence                   1233799999999999999998875  889999999999886432100000000011122222211111    


Q ss_pred             --------CCCHHHHHHHHHHhhccCC
Q 042560          261 --------VQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       261 --------~~~p~evA~~i~~l~~~~~  279 (287)
                              +..++|+|++++.+++++.
T Consensus       529 g~g~~~~~~i~v~Dva~ai~~~l~~~~  555 (660)
T 1z7e_A          529 DGGKQKRCFTDIRDGIEALYRIIENAG  555 (660)
T ss_dssp             GGGCCEEECEEHHHHHHHHHHHHHCGG
T ss_pred             CCCCeEEEEEEHHHHHHHHHHHHhCcc
Confidence                    2248999999999998654

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.75  E-value=5.4e-18  Score=145.65  Aligned_cols=179  Identities=15%  Similarity=0.076  Sum_probs=129.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|++ |++|++++|+... +         .  .   +.+|++|.++++++++..     ++|+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~-~---------~--~---~~~Dl~~~~~~~~~~~~~-----~~d~   60 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEI-Q---------G--G---YKLDLTDFPRLEDFIIKK-----RPDV   60 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCC-T---------T--C---EECCTTSHHHHHHHHHHH-----CCSE
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcC-C---------C--C---ceeccCCHHHHHHHHHhc-----CCCE
Confidence            589999999999999999995 8999999998742 0         1  1   789999999999888764     6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC----------CChhhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP----------RMSFYN  198 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~----------~~~~Y~  198 (287)
                      +|||||.....     ...+++++.+++|+.++..+++++.+    .++++|++||.....+.+          ....|+
T Consensus        61 vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~  131 (273)
T 2ggs_A           61 IINAAAMTDVD-----KCEIEKEKAYKINAEAVRHIVRAGKV----IDSYIVHISTDYVFDGEKGNYKEEDIPNPINYYG  131 (273)
T ss_dssp             EEECCCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHH----TTCEEEEEEEGGGSCSSSCSBCTTSCCCCSSHHH
T ss_pred             EEECCcccChh-----hhhhCHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEecceeEcCCCCCcCCCCCCCCCCHHH
Confidence            99999975431     11256778899999999999998854    346999999987654332          257899


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc---------CCCCCCHHHHH
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS---------LLPVQPTEECA  268 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~evA  268 (287)
                      .+|++++.+++.    .... +|++.|. |  ++++..              .+.+....         ...+..++|+|
T Consensus       132 ~sK~~~e~~~~~----~~~~~iR~~~v~-G--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~dva  190 (273)
T 2ggs_A          132 LSKLLGETFALQ----DDSLIIRTSGIF-R--NKGFPI--------------YVYKTLKEGKTVFAFKGYYSPISARKLA  190 (273)
T ss_dssp             HHHHHHHHHHCC----TTCEEEEECCCB-S--SSSHHH--------------HHHHHHHTTCCEEEESCEECCCBHHHHH
T ss_pred             HHHHHHHHHHhC----CCeEEEeccccc-c--ccHHHH--------------HHHHHHHcCCCEEeecCCCCceEHHHHH
Confidence            999999999887    2222 5555444 3  222111              11111000         22345799999


Q ss_pred             HHHHHhhccC
Q 042560          269 KAIVNSACRG  278 (287)
Q Consensus       269 ~~i~~l~~~~  278 (287)
                      ++++++++++
T Consensus       191 ~~i~~~~~~~  200 (273)
T 2ggs_A          191 SAILELLELR  200 (273)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcC
Confidence            9999999764

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.74  E-value=8.1e-18  Score=163.37  Aligned_cols=180  Identities=15%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..+++++++++||||+|+||++++++|+++|++|++++|+.....+..+.+......++.++.+|++|.+++++++++. 
T Consensus         5 ~~~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-   83 (699)
T 1z45_A            5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-   83 (699)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC-
Confidence            3456789999999999999999999999999999999987543222222222111235778899999999988887642 


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------  189 (287)
                          ++|++||+||.......     .+...+.+++|+.++..+++++..   .+.+++|++||.....           
T Consensus        84 ----~~D~Vih~A~~~~~~~~-----~~~~~~~~~~Nv~gt~~ll~a~~~---~~~~~iV~~SS~~vyg~~~~~~~~~~~  151 (699)
T 1z45_A           84 ----KIDSVIHFAGLKAVGES-----TQIPLRYYHNNILGTVVLLELMQQ---YNVSKFVFSSSATVYGDATRFPNMIPI  151 (699)
T ss_dssp             ----CCCEEEECCSCCCHHHH-----HHSHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEEEEGGGGCCGGGSTTCCSB
T ss_pred             ----CCCEEEECCcccCcCcc-----ccCHHHHHHHHHHHHHHHHHHHHH---cCCCEEEEECcHHHhCCCccccccCCc
Confidence                78999999997543211     123345788999998888776543   2247999999975421           


Q ss_pred             ----CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 ----PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 ----~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                          +......|+.+|++.+.+++.++.+....+++..+.|+.+..+.
T Consensus       152 ~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~  199 (699)
T 1z45_A          152 PEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAH  199 (699)
T ss_dssp             CTTSCCCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCC
T ss_pred             cccCCCCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCC
Confidence                11234689999999999999999885333889999998887654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.73  E-value=7.2e-18  Score=146.45  Aligned_cols=180  Identities=13%  Similarity=0.137  Sum_probs=131.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ..++++||||+|+||++++++|+++|++|++++|+                      .+|++|.++++++++..     +
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~Dl~d~~~~~~~~~~~-----~   63 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------------DLDITNVLAVNKFFNEK-----K   63 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT----------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc----------------------cCCCCCHHHHHHHHHhc-----C
Confidence            46889999999999999999999999999999996                      27999999998887654     6


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCC-----------CC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP-----------RM  194 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~-----------~~  194 (287)
                      +|++||+||.....     ...+++++.+++|+.++..+++++.+.    +.++|++||.....+.+           ..
T Consensus        64 ~d~vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~l~~a~~~~----~~~iv~~SS~~v~~~~~~~~~~E~~~~~~~  134 (292)
T 1vl0_A           64 PNVVINCAAHTAVD-----KCEEQYDLAYKINAIGPKNLAAAAYSV----GAEIVQISTDYVFDGEAKEPITEFDEVNPQ  134 (292)
T ss_dssp             CSEEEECCCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHH----TCEEEEEEEGGGSCSCCSSCBCTTSCCCCC
T ss_pred             CCEEEECCccCCHH-----HHhcCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEechHHeECCCCCCCCCCCCCCCCc
Confidence            89999999975321     112566788999999999999988663    34999999975433221           35


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc----------CCCCCCH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS----------LLPVQPT  264 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~p  264 (287)
                      ..|+.+|++.+.+++.++.      .+..+.|+.+..+ ...+          ...+.+....          ...+..+
T Consensus       135 ~~Y~~sK~~~E~~~~~~~~------~~~~lR~~~v~G~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~v  197 (292)
T 1vl0_A          135 SAYGKTKLEGENFVKALNP------KYYIVRTAWLYGD-GNNF----------VKTMINLGKTHDELKVVHDQVGTPTST  197 (292)
T ss_dssp             SHHHHHHHHHHHHHHHHCS------SEEEEEECSEESS-SSCH----------HHHHHHHHHHCSEEEEESSCEECCEEH
T ss_pred             cHHHHHHHHHHHHHHhhCC------CeEEEeeeeeeCC-CcCh----------HHHHHHHHhcCCcEEeecCeeeCCccH
Confidence            6899999999999987653      2566777777655 1111          1111111110          1122359


Q ss_pred             HHHHHHHHHhhccC
Q 042560          265 EECAKAIVNSACRG  278 (287)
Q Consensus       265 ~evA~~i~~l~~~~  278 (287)
                      +|+|++++++++++
T Consensus       198 ~Dva~~~~~~~~~~  211 (292)
T 1vl0_A          198 VDLARVVLKVIDEK  211 (292)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999764

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.73  E-value=1.9e-17  Score=145.43  Aligned_cols=155  Identities=21%  Similarity=0.229  Sum_probs=120.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           49 VVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++||||+|+||.+++++|+++  |++|++++|+....+            .+.++.+|++|.+++.+++++     .++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~------------~~~~~~~D~~d~~~~~~~~~~-----~~~   63 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG------------GIKFITLDVSNRDEIDRAVEK-----YSI   63 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT------------TCCEEECCTTCHHHHHHHHHH-----TTC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc------------CceEEEecCCCHHHHHHHHhh-----cCC
Confidence            3899999999999999999999  899999998754321            255788999999998888764     279


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC------------CCC
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP------------PRM  194 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~------------~~~  194 (287)
                      |++||+||.....      ..+++++.+++|+.++..+++++.+   .+.+++|++||.....+.            ...
T Consensus        64 d~vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~a~~~---~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~  134 (317)
T 3ajr_A           64 DAIFHLAGILSAK------GEKDPALAYKVNMNGTYNILEAAKQ---HRVEKVVIPSTIGVFGPETPKNKVPSITITRPR  134 (317)
T ss_dssp             CEEEECCCCCHHH------HHHCHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCC
T ss_pred             cEEEECCcccCCc------cccChHHHhhhhhHHHHHHHHHHHH---cCCCEEEEecCHHHhCCCCCCCCccccccCCCC
Confidence            9999999975321      1145567889999999999888754   223699999997654321            135


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccC
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIES  231 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t  231 (287)
                      ..|+.+|++.+.+++.++.+++  ++++.+.|+.+..
T Consensus       135 ~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lR~~~~~g  169 (317)
T 3ajr_A          135 TMFGVTKIAAELLGQYYYEKFG--LDVRSLRYPGIIS  169 (317)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEEC
T ss_pred             chHHHHHHHHHHHHHHHHHhcC--CeEEEEecCcEec
Confidence            7899999999999999988765  8889987655544

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.72  E-value=3e-17  Score=142.18  Aligned_cols=179  Identities=16%  Similarity=0.132  Sum_probs=133.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||++++++|+++|++|++++|.                      ++|++|.+++.++++..     ++|+
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~D~~d~~~~~~~~~~~-----~~d~   59 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------------LLDITNISQVQQVVQEI-----RPHI   59 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------------TSCTTCHHHHHHHHHHH-----CCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------------ccCCCCHHHHHHHHHhc-----CCCE
Confidence            79999999999999999999999999999991                      37999999998888765     7899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||+||.....     ...+.+.+.+++|+.++..+++++.+.    +.++|++||.....+           ......|
T Consensus        60 vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y  130 (287)
T 3sc6_A           60 IIHCAAYTKVD-----QAEKERDLAYVINAIGARNVAVASQLV----GAKLVYISTDYVFQGDRPEGYDEFHNPAPINIY  130 (287)
T ss_dssp             EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHHHH----TCEEEEEEEGGGSCCCCSSCBCTTSCCCCCSHH
T ss_pred             EEECCcccChH-----HHhcCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEchhhhcCCCCCCCCCCCCCCCCCCHH
Confidence            99999986532     122567788999999999999887543    458999999754322           1235689


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----------CCCCHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----------PVQPTEEC  267 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ev  267 (287)
                      +.+|.+.+.+++.++.      +...+.|+.+..+....+          ...+.+......          .+..++|+
T Consensus       131 ~~sK~~~E~~~~~~~~------~~~ilR~~~v~G~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv  194 (287)
T 3sc6_A          131 GASKYAGEQFVKELHN------KYFIVRTSWLYGKYGNNF----------VKTMIRLGKEREEISVVADQIGSPTYVADL  194 (287)
T ss_dssp             HHHHHHHHHHHHHHCS------SEEEEEECSEECSSSCCH----------HHHHHHHHTTCSEEEEECSCEECCEEHHHH
T ss_pred             HHHHHHHHHHHHHhCC------CcEEEeeeeecCCCCCcH----------HHHHHHHHHcCCCeEeecCcccCceEHHHH
Confidence            9999999999887654      346788999887643221          112222111111          11239999


Q ss_pred             HHHHHHhhccCC
Q 042560          268 AKAIVNSACRGD  279 (287)
Q Consensus       268 A~~i~~l~~~~~  279 (287)
                      |++++++++++.
T Consensus       195 a~~~~~~~~~~~  206 (287)
T 3sc6_A          195 NVMINKLIHTSL  206 (287)
T ss_dssp             HHHHHHHHTSCC
T ss_pred             HHHHHHHHhCCC
Confidence            999999998754

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.71  E-value=4.8e-17  Score=142.18  Aligned_cols=163  Identities=13%  Similarity=0.060  Sum_probs=122.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      +++||||+|+||++++++|+++| ++|++++|+.....  ...+..     +. +.+|++|.+.++++++..  ..+++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~-----~~-~~~d~~~~~~~~~~~~~~--~~~~~d   70 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVD-----LN-IADYMDKEDFLIQIMAGE--EFGDVE   70 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHHT-----SC-CSEEEEHHHHHHHHHTTC--CCSSCC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcCc-----ce-eccccccHHHHHHHHhcc--ccCCCc
Confidence            38999999999999999999999 89999999765421  011111     22 678999888777665411  013699


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----------CCChh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-----------PRMSF  196 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-----------~~~~~  196 (287)
                      ++||+||....       ..+++++.+++|+.++..+++++.+.   +. ++|++||.....+.           .....
T Consensus        71 ~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~a~~~~---~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~  139 (310)
T 1eq2_A           71 AIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER---EI-PFLYASSAATYGGRTSDFIESREYEKPLNV  139 (310)
T ss_dssp             EEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH---TC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSH
T ss_pred             EEEECcccccC-------cccCHHHHHHHHHHHHHHHHHHHHHc---CC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCCh
Confidence            99999997543       12556778999999999999888653   34 89999997543221           12567


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      |+.+|.+.+.+++.++.+++  ++++.++||.+.++..
T Consensus       140 Y~~sK~~~e~~~~~~~~~~g--~~~~~lrp~~v~G~~~  175 (310)
T 1eq2_A          140 YGYSKFLFDEYVRQILPEAN--SQIVGFRYFNVYGPRE  175 (310)
T ss_dssp             HHHHHHHHHHHHHHHGGGCS--SCEEEEEECEEESSSC
T ss_pred             hHHHHHHHHHHHHHHHHHcC--CCEEEEeCCcEECcCC
Confidence            99999999999999887754  8899999999988754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.70  E-value=9e-17  Score=141.29  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=120.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||||+|+||.+++++|+++|++|++++|+.                     .+|++|.+++++++++.     +
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------------~~D~~d~~~~~~~~~~~-----~   55 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------ELNLLDSRAVHDFFASE-----R   55 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------------cCCccCHHHHHHHHHhc-----C
Confidence            467899999999999999999999999999988762                     26999999988887654     6


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---------------  190 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---------------  190 (287)
                      +|++||+||.......    ..+++.+.+++|+.++..+++++..   .+.+++|++||.....+               
T Consensus        56 ~d~vih~a~~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~  128 (321)
T 1e6u_A           56 IDQVYLAAAKVGGIVA----NNTYPADFIYQNMMIESNIIHAAHQ---NDVNKLLFLGSSCIYPKLAKQPMAESELLQGT  128 (321)
T ss_dssp             CSEEEECCCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEECCGGGSCTTCCSSBCGGGTTSSC
T ss_pred             CCEEEEcCeecCCcch----hhhCHHHHHHHHHHHHHHHHHHHHH---hCCCeEEEEccHHHcCCCCCCCcCccccccCC
Confidence            8999999997532110    1134567888999998888887754   22369999999754321               


Q ss_pred             -CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          191 -PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       191 -~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                       .|....|+.+|.+.+.+++.++.+++  ++++.+.||.+..+..
T Consensus       129 ~~p~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          129 LEPTNEPYAIAKIAGIKLCESYNRQYG--RDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEESTTC
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHhC--CCEEEEEeCCcCCcCC
Confidence             11135899999999999999998875  8999999999988754

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.70  E-value=2.4e-16  Score=147.58  Aligned_cols=209  Identities=16%  Similarity=0.076  Sum_probs=143.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH---HHHHHHHHHh--------cCCCeeEEEeecCCCHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ---LREVADQAEL--------MGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~---~~~~~~~~~~--------~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      ..++++||||+|+||.+++++|.+.|++|++++|+...   .+...+.++.        ....++.++.+|+++.+++. 
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            34789999999999999999999999999999998763   2222222211        11246999999999988776 


Q ss_pred             HHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC--CC---
Q 042560          115 FVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG--WL---  189 (287)
Q Consensus       115 ~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~--~~---  189 (287)
                             ...++|++|||||....        ...+...+++|+.++..+++.+.+    +.+++|++||...  ..   
T Consensus       228 -------~~~~~D~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~~v~iSS~~vG~~~~~~  288 (508)
T 4f6l_B          228 -------LPENMDTIIHAGARTDH--------FGDDDEFEKVNVQGTVDVIRLAQQ----HHARLIYVSTISVGTYFDID  288 (508)
T ss_dssp             -------CSSCCSEEEECCCC----------------CCHHHHHHHHHHHHHHHHT----TTCEEEEEEESCTTSEECTT
T ss_pred             -------CccCCCEEEECCceecC--------CCCHHHHhhhHHHHHHHHHHHHHh----CCCcEEEeCChhhccCCccC
Confidence                   34689999999997532        144567889999999998888755    3579999999776  00   


Q ss_pred             -------------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh
Q 042560          190 -------------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI  256 (287)
Q Consensus       190 -------------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  256 (287)
                                   +......|+.+|.+.+.+++.++. .  .++++.+.||.+..+.....+.... .......+.+...
T Consensus       289 ~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~--gi~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~i~~~~  364 (508)
T 4f6l_B          289 TEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-N--GLDGRIVRVGNLTSPYNGRWHMRNI-KTNRFSMVMNDLL  364 (508)
T ss_dssp             CSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-T--TCEEEEEEECCEESCSSSCCCCTTC-TTCHHHHHHHHHT
T ss_pred             CcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH-c--CCCEEEEecceeccCCCCCcccCCc-chHHHHHHHHHHH
Confidence                         011457899999999999998754 2  3899999999998886543321110 0111122222222


Q ss_pred             cCC--C---------CCCHHHHHHHHHHhhccC
Q 042560          257 SLL--P---------VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       257 ~~~--~---------~~~p~evA~~i~~l~~~~  278 (287)
                      ...  |         +...+|+|++++.++..+
T Consensus       365 ~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~  397 (508)
T 4f6l_B          365 QLDCIGVSMAEMPVDFSFVDTTARQIVALAQVN  397 (508)
T ss_dssp             TCSEEETTGGGSEEECEEHHHHHHHHHHHTTBC
T ss_pred             HcCCCCCCccCceEEEEcHHHHHHHHHHHHhCC
Confidence            111  1         124899999999999865

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.70  E-value=5.3e-17  Score=141.36  Aligned_cols=181  Identities=13%  Similarity=0.056  Sum_probs=132.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|+||.+++++|. +|++|++++|+..                  .+.+|++|.+++.++++..     ++|+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~------------------~~~~D~~d~~~~~~~~~~~-----~~d~   57 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK------------------EFCGDFSNPKGVAETVRKL-----RPDV   57 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS------------------SSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc------------------cccccCCCHHHHHHHHHhc-----CCCE
Confidence            69999999999999999999 8999999999761                  2468999999988887653     6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----------CCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP-----------PRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~-----------~~~~~Y  197 (287)
                      +||+||.....     ...+++++.+++|+.++..+++++.    +.+.++|++||.....+.           .....|
T Consensus        58 vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~----~~~~~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y  128 (299)
T 1n2s_A           58 IVNAAAHTAVD-----KAESEPELAQLLNATSVEAIAKAAN----ETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVY  128 (299)
T ss_dssp             EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHT----TTTCEEEEEEEGGGSCCCTTCCBCTTSCCCCSSHH
T ss_pred             EEECcccCCHh-----hhhcCHHHHHHHHHHHHHHHHHHHH----HcCCcEEEEecccEEeCCCCCCCCCCCCCCCccHH
Confidence            99999975421     1125567789999999988888863    334589999997543221           225689


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC----------CCCCCHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL----------LPVQPTEEC  267 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ev  267 (287)
                      +.+|.+.+.+++.++.      +++.+.||.+.++....+          ...+.+.....          .....++|+
T Consensus       129 ~~sK~~~E~~~~~~~~------~~~ilRp~~v~G~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv  192 (299)
T 1n2s_A          129 GKTKLAGEKALQDNCP------KHLIFRTSWVYAGKGNNF----------AKTMLRLAKERQTLSVINDQYGAPTGAELL  192 (299)
T ss_dssp             HHHHHHHHHHHHHHCS------SEEEEEECSEECSSSCCH----------HHHHHHHHHHCSEEEEECSCEECCEEHHHH
T ss_pred             HHHHHHHHHHHHHhCC------CeEEEeeeeecCCCcCcH----------HHHHHHHHhcCCCEEeecCcccCCeeHHHH
Confidence            9999999998887643      678899999988753211          11222211111          111238999


Q ss_pred             HHHHHHhhccC
Q 042560          268 AKAIVNSACRG  278 (287)
Q Consensus       268 A~~i~~l~~~~  278 (287)
                      |++++.+++++
T Consensus       193 a~~~~~~~~~~  203 (299)
T 1n2s_A          193 ADCTAHAIRVA  203 (299)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.70  E-value=1.8e-16  Score=141.74  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=111.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeec-CCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD-VSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~v~~~~~~~~~~~  123 (287)
                      +++++++||||+|+||++++++|+++|++|++++|+.++..  .+.+...  ..+..+.+| ++|.+++.++++      
T Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~~--~~v~~v~~D~l~d~~~l~~~~~------   72 (352)
T 1xgk_A            3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQAI--PNVTLFQGPLLNNVPLMDTLFE------   72 (352)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHTS--TTEEEEESCCTTCHHHHHHHHT------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhhc--CCcEEEECCccCCHHHHHHHHh------
Confidence            45788999999999999999999999999999999877542  1222221  247888999 999999887764      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCC-CCCCCCCChhhhhh
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAA-GWLPPPRMSFYNAS  200 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~-~~~~~~~~~~Y~as  200 (287)
                       .+|++|||++...          .      +.|..+     +.+++.+++.+  +++|++||.. +.++.+....|+.+
T Consensus        73 -~~d~Vi~~a~~~~----------~------~~~~~~-----~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~s  130 (352)
T 1xgk_A           73 -GAHLAFINTTSQA----------G------DEIAIG-----KDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAP  130 (352)
T ss_dssp             -TCSEEEECCCSTT----------S------CHHHHH-----HHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHH
T ss_pred             -cCCEEEEcCCCCC----------c------HHHHHH-----HHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHH
Confidence             5799999987421          0      123332     44455444433  6999999987 44444556789999


Q ss_pred             HHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          201 KAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      |++.+.+++.+      .++++.++||++-++.
T Consensus       131 K~~~E~~~~~~------gi~~~ivrpg~~g~~~  157 (352)
T 1xgk_A          131 KFTVENYVRQL------GLPSTFVYAGIYNNNF  157 (352)
T ss_dssp             HHHHHHHHHTS------SSCEEEEEECEEGGGC
T ss_pred             HHHHHHHHHHc------CCCEEEEecceecCCc
Confidence            99999988752      3788899999876544

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.69  E-value=3.4e-16  Score=136.75  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=118.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++++||||+|+||++++++|.++|+      +...            ....+..+.+|++|.+++.++++..    
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~------------~~~~~~~~~~D~~d~~~~~~~~~~~----   60 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE------------DWVFVSSKDADLTDTAQTRALFEKV----   60 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC------------EEEECCTTTCCTTSHHHHHHHHHHS----
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc------------cccccCceecccCCHHHHHHHHhhc----
Confidence            35778999999999999999999999998      1000            0012334578999999988887642    


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC--------------
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL--------------  189 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~--------------  189 (287)
                       ++|++||+||......    ...+.+.+.+++|+.++..+++++...   +.+++|++||.....              
T Consensus        61 -~~d~Vih~A~~~~~~~----~~~~~~~~~~~~nv~gt~~ll~a~~~~---~~~~~v~~SS~~vyg~~~~~~~~E~~~~~  132 (319)
T 4b8w_A           61 -QPTHVIHLAAMVGGLF----RNIKYNLDFWRKNVHMNDNVLHSAFEV---GARKVVSCLSTCIFPDKTTYPIDETMIHN  132 (319)
T ss_dssp             -CCSEEEECCCCCCCHH----HHTTCHHHHHHHHHHHHHHHHHHHHHT---TCSEEEEECCGGGSCSSCCSSBCGGGGGB
T ss_pred             -CCCEEEECceeccccc----ccccCHHHHHHHHHHHHHHHHHHHHHc---CCCeEEEEcchhhcCCCCCCCcccccccc
Confidence             6999999999843211    122556678999999998888876432   236999999975431              


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                        +.|....|+.+|.+.+.+++.++.+.+  +++..+.|+.+..+..
T Consensus       133 ~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          133 GPPHNSNFGYSYAKRMIDVQNRAYFQQYG--CTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             SCCCSSSHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECTTC
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhhC--CCEEEEeeccccCCCC
Confidence              122233699999999999999998875  8899999999988754

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.68  E-value=1.1e-16  Score=139.56  Aligned_cols=194  Identities=9%  Similarity=0.021  Sum_probs=126.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .++++||||+|+||++++++|+++| ++|++++|+.++...  +.+..   ..+.++.+|++|.+++.++++       +
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~---~~~~~~~~D~~d~~~l~~~~~-------~   72 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL---QGAEVVQGDQDDQVIMELALN-------G   72 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH---TTCEEEECCTTCHHHHHHHHT-------T
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH---CCCEEEEecCCCHHHHHHHHh-------c
Confidence            5789999999999999999999999 999999998765421  22222   137788999999999887764       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCC---CCChhhhhhH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPP---PRMSFYNASK  201 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~---~~~~~Y~asK  201 (287)
                      +|++||++|.....             ..+.|+    ...+.+++.+++.+ +++|+.|+ .+..+.   +....|..+|
T Consensus        73 ~d~vi~~a~~~~~~-------------~~~~~~----~~~~~~~~aa~~~gv~~iv~~S~-~~~~~~~~~~~~~~y~~sK  134 (299)
T 2wm3_A           73 AYATFIVTNYWESC-------------SQEQEV----KQGKLLADLARRLGLHYVVYSGL-ENIKKLTAGRLAAAHFDGK  134 (299)
T ss_dssp             CSEEEECCCHHHHT-------------CHHHHH----HHHHHHHHHHHHHTCSEEEECCC-CCHHHHTTTSCCCHHHHHH
T ss_pred             CCEEEEeCCCCccc-------------cchHHH----HHHHHHHHHHHHcCCCEEEEEcC-ccccccCCCcccCchhhHH
Confidence            89999999853110             122333    34455555555444 78999555 443221   1246799999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC--cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN--KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++++.+.+.    .+  ++++.++||.+.++....+...  .........  .-......++..++|+|+.++.++.++
T Consensus       135 ~~~e~~~~~----~g--i~~~ilrp~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~Dva~~~~~~l~~~  205 (299)
T 2wm3_A          135 GEVEEYFRD----IG--VPMTSVRLPCYFENLLSHFLPQKAPDGKSYLLS--LPTGDVPMDGMSVSDLGPVVLSLLKMP  205 (299)
T ss_dssp             HHHHHHHHH----HT--CCEEEEECCEEGGGGGTTTCCEECTTSSSEEEC--CCCTTSCEEEECGGGHHHHHHHHHHSH
T ss_pred             HHHHHHHHH----CC--CCEEEEeecHHhhhchhhcCCcccCCCCEEEEE--ecCCCCccceecHHHHHHHHHHHHcCh
Confidence            999988764    23  8899999999998765422110  000000000  000001112236899999999998753

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.68  E-value=3.6e-17  Score=143.53  Aligned_cols=200  Identities=14%  Similarity=0.034  Sum_probs=131.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh-cCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-MGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++++++||||+|+||.+++++|+++|++|++++|+........+.+.. .....+.++.+|++               
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---------------   68 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---------------   68 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---------------
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---------------
Confidence            35678999999999999999999999999999999976521000000000 00112334444544               


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------C
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------P  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~  191 (287)
                        ++|++||+||......     ..+.....++ |+.+...+++++...   +.+++|++||......           .
T Consensus        69 --~~d~vi~~a~~~~~~~-----~~~~~~~~~~-n~~~~~~ll~a~~~~---~v~~~v~~SS~~v~~~~~~~~~~E~~~~  137 (321)
T 3vps_A           69 --DVRLVYHLASHKSVPR-----SFKQPLDYLD-NVDSGRHLLALCTSV---GVPKVVVGSTCEVYGQADTLPTPEDSPL  137 (321)
T ss_dssp             --TEEEEEECCCCCCHHH-----HTTSTTTTHH-HHHHHHHHHHHHHHH---TCCEEEEEEEGGGGCSCSSSSBCTTSCC
T ss_pred             --cCCEEEECCccCChHH-----HHhCHHHHHH-HHHHHHHHHHHHHHc---CCCeEEEecCHHHhCCCCCCCCCCCCCC
Confidence              7899999999765321     1133445667 999988888877443   2369999999754321           1


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCe-EEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC------------
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDI-GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL------------  258 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i-~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  258 (287)
                      .....|+.+|.+.+.+++.++.+.+  + +++.+.|+.+..+.....        .....+.......            
T Consensus       138 ~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  207 (321)
T 3vps_A          138 SPRSPYAASKVGLEMVAGAHQRASV--APEVGIVRFFNVYGPGERPD--------ALVPRLCANLLTRNELPVEGDGEQR  207 (321)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHSSS--SCEEEEEEECEEECTTCCTT--------SHHHHHHHHHHHHSEEEEETTSCCE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcC--CCceEEEEeccccCcCCCCC--------ChHHHHHHHHHcCCCeEEeCCCCce
Confidence            2357899999999999999998764  7 899999999988754320        0011221111111            


Q ss_pred             CCCCCHHHHHHHHHHhhccCC
Q 042560          259 LPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       259 ~~~~~p~evA~~i~~l~~~~~  279 (287)
                      ..+..++|+|++++.+++++.
T Consensus       208 ~~~v~v~Dva~~~~~~~~~~~  228 (321)
T 3vps_A          208 RDFTYITDVVDKLVALANRPL  228 (321)
T ss_dssp             ECEEEHHHHHHHHHHGGGSCC
T ss_pred             EceEEHHHHHHHHHHHHhcCC
Confidence            011249999999999998764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.67  E-value=8e-16  Score=133.07  Aligned_cols=180  Identities=13%  Similarity=0.060  Sum_probs=128.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      |+++||||+|+||++++++|+++  |++|++++|+.++.++...       ..+.++.+|++|.+++.++++       +
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~-------~~~~~~~~D~~d~~~l~~~~~-------~   66 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD-------QGVEVRHGDYNQPESLQKAFA-------G   66 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH-------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh-------cCCeEEEeccCCHHHHHHHHh-------c
Confidence            46999999999999999999999  9999999998776543321       247788999999988877764       5


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++||++|...          +.     ++|+.+...+++++.    +.+ +++|++||.... +  ....|+.+|.+.
T Consensus        67 ~d~vi~~a~~~~----------~~-----~~n~~~~~~l~~a~~----~~~~~~~v~~Ss~~~~-~--~~~~y~~~K~~~  124 (287)
T 2jl1_A           67 VSKLLFISGPHY----------DN-----TLLIVQHANVVKAAR----DAGVKHIAYTGYAFAE-E--SIIPLAHVHLAT  124 (287)
T ss_dssp             CSEEEECCCCCS----------CH-----HHHHHHHHHHHHHHH----HTTCSEEEEEEETTGG-G--CCSTHHHHHHHH
T ss_pred             CCEEEEcCCCCc----------Cc-----hHHHHHHHHHHHHHH----HcCCCEEEEECCCCCC-C--CCCchHHHHHHH
Confidence            899999998521          11     467777776666653    333 699999998764 2  234799999999


Q ss_pred             HHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh------hcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ------ISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +.+.+.    .  .++++.+.||.+.++.....+         ........      .....+..++|+|++++.+++++
T Consensus       125 E~~~~~----~--~~~~~ilrp~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~  189 (287)
T 2jl1_A          125 EYAIRT----T--NIPYTFLRNALYTDFFVNEGL---------RASTESGAIVTNAGSGIVNSVTRNELALAAATVLTEE  189 (287)
T ss_dssp             HHHHHH----T--TCCEEEEEECCBHHHHSSGGG---------HHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred             HHHHHH----c--CCCeEEEECCEeccccchhhH---------HHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcCC
Confidence            998753    2  388999999988775421111         01000000      01123446999999999999764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.67  E-value=5.9e-16  Score=133.75  Aligned_cols=175  Identities=10%  Similarity=0.019  Sum_probs=120.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           49 VVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++||||+|+||++++++|+++  |++|++++|+.++.++...       ..+.++.+|++|.+++.++++       ++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~-------~~   66 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA-------QGITVRQADYGDEAALTSALQ-------GV   66 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH-------TTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc-------CCCeEEEcCCCCHHHHHHHHh-------CC
Confidence            3799999999999999999998  9999999998776543321       147788999999988877653       57


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      |++||++|...          +       .|+.+...++++    +++.+ +++|++||.... +  ....|+.+|.+.+
T Consensus        67 d~vi~~a~~~~----------~-------~~~~~~~~l~~a----~~~~~~~~~v~~Ss~~~~-~--~~~~y~~sK~~~e  122 (286)
T 2zcu_A           67 EKLLLISSSEV----------G-------QRAPQHRNVINA----AKAAGVKFIAYTSLLHAD-T--SPLGLADEHIETE  122 (286)
T ss_dssp             SEEEECC-------------------------CHHHHHHHH----HHHHTCCEEEEEEETTTT-T--CCSTTHHHHHHHH
T ss_pred             CEEEEeCCCCc----------h-------HHHHHHHHHHHH----HHHcCCCEEEEECCCCCC-C--CcchhHHHHHHHH
Confidence            99999998521          1       134444444444    43333 799999998765 2  2357999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHh-hh------hcCCCCCCHHHHHHHHHHhhccC
Q 042560          206 ALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRD-VQ------ISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       206 ~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      .+++.    .  .++++.++||++.++.....           ....+ ..      .....+..++|+|++++.+++++
T Consensus       123 ~~~~~----~--~~~~~ilrp~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~  185 (286)
T 2zcu_A          123 KMLAD----S--GIVYTLLRNGWYSENYLASA-----------PAALEHGVFIGAAGDGKIASATRADYAAAAARVISEA  185 (286)
T ss_dssp             HHHHH----H--CSEEEEEEECCBHHHHHTTH-----------HHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHSS
T ss_pred             HHHHH----c--CCCeEEEeChHHhhhhHHHh-----------HHhhcCCceeccCCCCccccccHHHHHHHHHHHhcCC
Confidence            98763    2  38999999998877542110           01110 00      11123346999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.66  E-value=3.7e-17  Score=141.66  Aligned_cols=182  Identities=14%  Similarity=0.031  Sum_probs=128.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++||| +|+||++++++|.++|++|++++|+.+.+           ...+.++.+|++|.++++++++      ++
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~------~~   63 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-----------PAGVQTLIADVTRPDTLASIVH------LR   63 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-----------CTTCCEEECCTTCGGGCTTGGG------GC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccCCceEEccCCChHHHHHhhc------CC
Confidence            457899999 59999999999999999999999987652           1357889999999998877654      36


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC-----------CCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP-----------PPR  193 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~-----------~~~  193 (287)
                      +|++||+||...          ++....+++|+.++..+++++.    +.+ +++|++||......           ...
T Consensus        64 ~d~vih~a~~~~----------~~~~~~~~~n~~~~~~ll~a~~----~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p  129 (286)
T 3gpi_A           64 PEILVYCVAASE----------YSDEHYRLSYVEGLRNTLSALE----GAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIA  129 (286)
T ss_dssp             CSEEEECHHHHH----------HC-----CCSHHHHHHHHHHTT----TSCCCEEEEEEEGGGCCCCCSSEECTTSCCCC
T ss_pred             CCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHHHHh----hCCCCEEEEEcccEEEcCCCCCCCCCCCCCCC
Confidence            999999998631          2345567889988888777763    334 79999999754321           123


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-----CCCCCCHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-----LLPVQPTEECA  268 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~evA  268 (287)
                      ...|+.+|.+.+.+ +..       ++++.+.|+.+..+....+.          ..+.+....     ...+...+|+|
T Consensus       130 ~~~Y~~sK~~~E~~-~~~-------~~~~ilR~~~v~G~~~~~~~----------~~~~~~~~~~~~~~~~~~i~v~Dva  191 (286)
T 3gpi_A          130 KDFSGKRMLEAEAL-LAA-------YSSTILRFSGIYGPGRLRMI----------RQAQTPEQWPARNAWTNRIHRDDGA  191 (286)
T ss_dssp             CSHHHHHHHHHHHH-GGG-------SSEEEEEECEEEBTTBCHHH----------HHTTCGGGSCSSBCEECEEEHHHHH
T ss_pred             CChhhHHHHHHHHH-Hhc-------CCeEEEecccccCCCchhHH----------HHHHhcccCCCcCceeEEEEHHHHH
Confidence            56899999999987 542       67888999999877543111          111110000     01112489999


Q ss_pred             HHHHHhhcc
Q 042560          269 KAIVNSACR  277 (287)
Q Consensus       269 ~~i~~l~~~  277 (287)
                      ++++.++.+
T Consensus       192 ~~~~~~~~~  200 (286)
T 3gpi_A          192 AFIAYLIQQ  200 (286)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999986

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.64  E-value=3.5e-15  Score=130.22  Aligned_cols=187  Identities=13%  Similarity=0.105  Sum_probs=119.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-------hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-------RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +++++||||+|+||++++++|+++|++|++++|+.       ++.+.. +.+..   ..+.++.+|++|.+++.++++  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~---~~v~~v~~D~~d~~~l~~~~~--   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS---LGVILLEGDINDHETLVKAIK--   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH---TTCEEEECCTTCHHHHHHHHT--
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh---CCCEEEEeCCCCHHHHHHHHh--
Confidence            46799999999999999999999999999999986       444332 22222   237889999999998877764  


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCC------CC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWL------PP  191 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~------~~  191 (287)
                           ++|++||++|...                    +.+...++++    +++.+  +++|  .|..+..      +.
T Consensus        76 -----~~d~vi~~a~~~~--------------------~~~~~~l~~a----a~~~g~v~~~v--~S~~g~~~~~~~~~~  124 (307)
T 2gas_A           76 -----QVDIVICAAGRLL--------------------IEDQVKIIKA----IKEAGNVKKFF--PSEFGLDVDRHDAVE  124 (307)
T ss_dssp             -----TCSEEEECSSSSC--------------------GGGHHHHHHH----HHHHCCCSEEE--CSCCSSCTTSCCCCT
T ss_pred             -----CCCEEEECCcccc--------------------cccHHHHHHH----HHhcCCceEEe--ecccccCcccccCCC
Confidence                 5899999998632                    1223334443    33322  5776  3444421      12


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHH--HhhhhcCCCCCCHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEI--RDVQISLLPVQPTEECAK  269 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~evA~  269 (287)
                      |....| .+|++++.+.+.    .+  ++++.++||++.+++...+..... ........  ........++..++|+|+
T Consensus       125 p~~~~y-~sK~~~e~~~~~----~~--i~~~~lrp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Dva~  196 (307)
T 2gas_A          125 PVRQVF-EEKASIRRVIEA----EG--VPYTYLCCHAFTGYFLRNLAQLDA-TDPPRDKVVILGDGNVKGAYVTEADVGT  196 (307)
T ss_dssp             THHHHH-HHHHHHHHHHHH----HT--CCBEEEECCEETTTTGGGTTCTTC-SSCCSSEEEEETTSCSEEEEECHHHHHH
T ss_pred             cchhHH-HHHHHHHHHHHH----cC--CCeEEEEcceeecccccccccccc-ccCCCCeEEEecCCCcceEEeeHHHHHH
Confidence            335679 999999887753    23  788889999998875432211000 00000000  000001122346999999


Q ss_pred             HHHHhhccC
Q 042560          270 AIVNSACRG  278 (287)
Q Consensus       270 ~i~~l~~~~  278 (287)
                      .++.+++++
T Consensus       197 ~~~~~l~~~  205 (307)
T 2gas_A          197 FTIRAANDP  205 (307)
T ss_dssp             HHHHHHTCG
T ss_pred             HHHHHHcCc
Confidence            999999764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.62  E-value=4.1e-15  Score=128.85  Aligned_cols=180  Identities=14%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      +++||||+|+||++++++|.+. |++|++++|+.++.+...       ...+.++.+|++|.+++.++++       ++|
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~-------~~~v~~~~~D~~d~~~l~~~~~-------~~d   67 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW-------RGKVSVRQLDYFNQESMVEAFK-------GMD   67 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG-------BTTBEEEECCTTCHHHHHHHTT-------TCS
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh-------hCCCEEEEcCCCCHHHHHHHHh-------CCC
Confidence            4899999999999999999998 999999999987643321       1258899999999998877764       689


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      ++||++|.....               ..|+    ...+.+++.+++.+ +++|++||.......+    |..++...  
T Consensus        68 ~vi~~a~~~~~~---------------~~~~----~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~~~----~~~~~~~~--  122 (289)
T 3e48_A           68 TVVFIPSIIHPS---------------FKRI----PEVENLVYAAKQSGVAHIIFIGYYADQHNNP----FHMSPYFG--  122 (289)
T ss_dssp             EEEECCCCCCSH---------------HHHH----HHHHHHHHHHHHTTCCEEEEEEESCCSTTCC----STTHHHHH--
T ss_pred             EEEEeCCCCccc---------------hhhH----HHHHHHHHHHHHcCCCEEEEEcccCCCCCCC----CccchhHH--
Confidence            999999863211               1133    33455566565555 7999999965433322    33333211  


Q ss_pred             HHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC-------CCCHHHHHHHHHHhhccCC
Q 042560          207 LYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-------VQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       207 ~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~evA~~i~~l~~~~~  279 (287)
                      .......+.+  ++++.++||.+.++....           .....+......+       +..++|+|++++.+++++.
T Consensus       123 ~~e~~~~~~g--~~~~ilrp~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~  189 (289)
T 3e48_A          123 YASRLLSTSG--IDYTYVRMAMYMDPLKPY-----------LPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPD  189 (289)
T ss_dssp             HHHHHHHHHC--CEEEEEEECEESTTHHHH-----------HHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHcC--CCEEEEeccccccccHHH-----------HHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence            1222222222  899999999998874321           1111111111222       2359999999999998764


Q ss_pred             c
Q 042560          280 R  280 (287)
Q Consensus       280 ~  280 (287)
                      .
T Consensus       190 ~  190 (289)
T 3e48_A          190 T  190 (289)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.61  E-value=8.2e-15  Score=130.36  Aligned_cols=193  Identities=15%  Similarity=0.013  Sum_probs=124.6

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh----hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE----RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      |+.++++||||+|+||++++++|+++|++|++++|+.    ++.+. .+.+..   ..+.++.+|++|.+++.+++++. 
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-~~~l~~---~~v~~~~~Dl~d~~~l~~~~~~~-   82 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKI-FKALED---KGAIIVYGLINEQEAMEKILKEH-   82 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-HHHHHH---TTCEEEECCTTCHHHHHHHHHHT-
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHH-HHHHHh---CCcEEEEeecCCHHHHHHHHhhC-
Confidence            3467899999999999999999999999999999976    33322 222222   25889999999999998887652 


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCC-----CCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWL-----PPPRM  194 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~-----~~~~~  194 (287)
                          ++|++||++|..                    |+.+...+++++...   + -.++|+ | ..+..     +.+..
T Consensus        83 ----~~d~Vi~~a~~~--------------------n~~~~~~l~~aa~~~---g~v~~~v~-S-~~g~~~~e~~~~~p~  133 (346)
T 3i6i_A           83 ----EIDIVVSTVGGE--------------------SILDQIALVKAMKAV---GTIKRFLP-S-EFGHDVNRADPVEPG  133 (346)
T ss_dssp             ----TCCEEEECCCGG--------------------GGGGHHHHHHHHHHH---CCCSEEEC-S-CCSSCTTTCCCCTTH
T ss_pred             ----CCCEEEECCchh--------------------hHHHHHHHHHHHHHc---CCceEEee-c-ccCCCCCccCcCCCc
Confidence                789999999862                    566666666665432   2 246664 4 33322     22445


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHH--HHhhhhcCCCCCCHHHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE--IRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      ..|+.+|.+++.+.+.    .  .+++..++||.+............. .......  ..........+..++|+|+.++
T Consensus       134 ~~y~~sK~~~e~~l~~----~--g~~~tivrpg~~~g~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~  206 (346)
T 3i6i_A          134 LNMYREKRRVRQLVEE----S--GIPFTYICCNSIASWPYYNNIHPSE-VLPPTDFFQIYGDGNVKAYFVAGTDIGKFTM  206 (346)
T ss_dssp             HHHHHHHHHHHHHHHH----T--TCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH----c--CCCEEEEEecccccccCcccccccc-ccCCCceEEEccCCCceEEecCHHHHHHHHH
Confidence            6899999998887764    2  2788899999887754332211000 0000000  0000001112335999999999


Q ss_pred             HhhccC
Q 042560          273 NSACRG  278 (287)
Q Consensus       273 ~l~~~~  278 (287)
                      .++.++
T Consensus       207 ~~l~~~  212 (346)
T 3i6i_A          207 KTVDDV  212 (346)
T ss_dssp             HHTTCG
T ss_pred             HHHhCc
Confidence            999865

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.60  E-value=4.3e-14  Score=126.79  Aligned_cols=174  Identities=16%  Similarity=0.063  Sum_probs=127.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      +++||||+|+||++++++|+++|+ +|+..+|+                          +|.++++++++       ++|
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------------~d~~~l~~~~~-------~~d   48 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------------TKEEELESALL-------KAD   48 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------------CCHHHHHHHHH-------HCS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------------CCHHHHHHHhc-------cCC
Confidence            599999999999999999999998 77777665                          67777777765       489


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++||+||....         +.+...+++|+.++..+++++    ++.+  .++|++||.....    ...|+.+|.+.+
T Consensus        49 ~Vih~a~~~~~---------~~~~~~~~~n~~~~~~l~~a~----~~~~~~~~~v~~Ss~~~~~----~~~Y~~sK~~~E  111 (369)
T 3st7_A           49 FIVHLAGVNRP---------EHDKEFSLGNVSYLDHVLDIL----TRNTKKPAILLSSSIQATQ----DNPYGESKLQGE  111 (369)
T ss_dssp             EEEECCCSBCT---------TCSTTCSSSCCBHHHHHHHHH----TTCSSCCEEEEEEEGGGGS----CSHHHHHHHHHH
T ss_pred             EEEECCcCCCC---------CCHHHHHHHHHHHHHHHHHHH----HHhCCCCeEEEeCchhhcC----CCCchHHHHHHH
Confidence            99999997542         344557788999988887775    3333  3899999987653    668999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC-----------CCHHHHHHHHHHh
Q 042560          206 ALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-----------QPTEECAKAIVNS  274 (287)
Q Consensus       206 ~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~p~evA~~i~~l  274 (287)
                      .+++.++++.+  +++..+.|+.+..+......      ......+.+......++           ..++|+|++++.+
T Consensus       112 ~~~~~~~~~~g--~~~~i~R~~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~  183 (369)
T 3st7_A          112 QLLREYAEEYG--NTVYIYRWPNLFGKWCKPNY------NSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRA  183 (369)
T ss_dssp             HHHHHHHHHHC--CCEEEEEECEEECTTCCTTS------SCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCEEEEECCceeCCCCCCCc------chHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHH
Confidence            99999999876  77888999998877433210      01112222222221111           1389999999999


Q ss_pred             hccCCc
Q 042560          275 ACRGDR  280 (287)
Q Consensus       275 ~~~~~~  280 (287)
                      +..+..
T Consensus       184 l~~~~~  189 (369)
T 3st7_A          184 IEGTPT  189 (369)
T ss_dssp             HHTCCC
T ss_pred             HhCCcc
Confidence            987643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.57  E-value=5.3e-14  Score=121.54  Aligned_cols=181  Identities=12%  Similarity=0.033  Sum_probs=121.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++|||| |.||.+++++|.++|++|++++|+..+.+....       ..+.++.+|++|.+            ..++|
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~------------~~~~d   65 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS------------LDGVT   65 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC------------CTTCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------CCCeEEEecccccc------------cCCCC
Confidence            67999998 999999999999999999999999887654432       24888999999833            35789


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc---CCCEEEEEcCCCCCC-----------CCCC
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ---TKGKIIVVASAAGWL-----------PPPR  193 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~---~~g~iv~isS~~~~~-----------~~~~  193 (287)
                      ++||+||.....        +.              ..+.++..+++   +.+++|++||.....           +...
T Consensus        66 ~vi~~a~~~~~~--------~~--------------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p  123 (286)
T 3ius_A           66 HLLISTAPDSGG--------DP--------------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTP  123 (286)
T ss_dssp             EEEECCCCBTTB--------CH--------------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCC
T ss_pred             EEEECCCccccc--------cH--------------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCC
Confidence            999999864321        00              12334444443   237999999864321           1122


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      ...|+.+|.+.+.+++.+     ..++++.++||.+..+.......-......   ..... .....+-..+|+|++++.
T Consensus       124 ~~~Y~~sK~~~E~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~---~~~~~-~~~~~~i~v~Dva~a~~~  194 (286)
T 3ius_A          124 TAARGRWRVMAEQQWQAV-----PNLPLHVFRLAGIYGPGRGPFSKLGKGGIR---RIIKP-GQVFSRIHVEDIAQVLAA  194 (286)
T ss_dssp             CSHHHHHHHHHHHHHHHS-----TTCCEEEEEECEEEBTTBSSSTTSSSSCCC---EEECT-TCCBCEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh-----cCCCEEEEeccceECCCchHHHHHhcCCcc---ccCCC-CcccceEEHHHHHHHHHH
Confidence            457999999999988877     238899999999988753321110000000   00000 011122247999999999


Q ss_pred             hhccCC
Q 042560          274 SACRGD  279 (287)
Q Consensus       274 l~~~~~  279 (287)
                      ++..+.
T Consensus       195 ~~~~~~  200 (286)
T 3ius_A          195 SMARPD  200 (286)
T ss_dssp             HHHSCC
T ss_pred             HHhCCC
Confidence            998754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.55  E-value=4.8e-14  Score=123.31  Aligned_cols=192  Identities=13%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-----hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-----RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++||||+|+||++++++|+++|++|++++|+.     ++.+.. +.+..   ..+.++.+|++|.+++.++++    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~~---~~~~~~~~D~~d~~~l~~~~~----   75 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQ---LGAKLIEASLDDHQRLVDALK----   75 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHT---TTCEEECCCSSCHHHHHHHHT----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHHh---CCeEEEeCCCCCHHHHHHHHh----
Confidence            35799999999999999999999999999999984     232222 22222   247889999999998877764    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCC------C-CC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWL------P-PP  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~------~-~~  192 (287)
                         ++|++||++|.....                .|+.+...+++++    ++.+  +++|+  |..+..      + .|
T Consensus        76 ---~~d~vi~~a~~~~~~----------------~~~~~~~~l~~aa----~~~g~v~~~v~--S~~g~~~~~~~~~~~p  130 (313)
T 1qyd_A           76 ---QVDVVISALAGGVLS----------------HHILEQLKLVEAI----KEAGNIKRFLP--SEFGMDPDIMEHALQP  130 (313)
T ss_dssp             ---TCSEEEECCCCSSSS----------------TTTTTHHHHHHHH----HHSCCCSEEEC--SCCSSCTTSCCCCCSS
T ss_pred             ---CCCEEEECCccccch----------------hhHHHHHHHHHHH----HhcCCCceEEe--cCCcCCccccccCCCC
Confidence               589999999864321                1344444444443    3333  57774  443421      1 23


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHH--HHhhhhcCCCCCCHHHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQE--IRDVQISLLPVQPTEECAKA  270 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~evA~~  270 (287)
                      ....| .+|.+++.+.+    +.+  ++++.+.||++.++....+.............  .........++..++|+|+.
T Consensus       131 ~~~~y-~sK~~~e~~~~----~~g--~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~  203 (313)
T 1qyd_A          131 GSITF-IDKRKVRRAIE----AAS--IPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTY  203 (313)
T ss_dssp             TTHHH-HHHHHHHHHHH----HTT--CCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHH
T ss_pred             CcchH-HHHHHHHHHHH----hcC--CCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHH
Confidence            45678 99999988775    222  67778899988765432211100000000000  00000011123369999999


Q ss_pred             HHHhhccC
Q 042560          271 IVNSACRG  278 (287)
Q Consensus       271 i~~l~~~~  278 (287)
                      ++.++.++
T Consensus       204 ~~~~l~~~  211 (313)
T 1qyd_A          204 TIKSIDDP  211 (313)
T ss_dssp             HHHHTTCG
T ss_pred             HHHHHhCc
Confidence            99999764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.55  E-value=9.5e-15  Score=128.45  Aligned_cols=185  Identities=16%  Similarity=0.138  Sum_probs=114.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-h----HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-R----QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++||||+|+||++++++|+++|++|++++|+. .    ...+..+.+..   ..+.++.+|++|.+++.++++    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~---~~v~~v~~D~~d~~~l~~a~~----   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS---MGVTIIEGEMEEHEKMVSVLK----   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH---TTCEEEECCTTCHHHHHHHHT----
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc---CCcEEEEecCCCHHHHHHHHc----
Confidence            35699999999999999999999999999999986 1    11122222222   247889999999998887764    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCC------CCCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWL------PPPR  193 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~------~~~~  193 (287)
                         ++|++||++|...                    +.+.    +.+++.+++.+  +++|  .|..+..      +.|.
T Consensus        77 ---~~d~vi~~a~~~~--------------------~~~~----~~l~~aa~~~g~v~~~v--~S~~g~~~~~~~~~~p~  127 (321)
T 3c1o_A           77 ---QVDIVISALPFPM--------------------ISSQ----IHIINAIKAAGNIKRFL--PSDFGCEEDRIKPLPPF  127 (321)
T ss_dssp             ---TCSEEEECCCGGG--------------------SGGG----HHHHHHHHHHCCCCEEE--CSCCSSCGGGCCCCHHH
T ss_pred             ---CCCEEEECCCccc--------------------hhhH----HHHHHHHHHhCCccEEe--ccccccCccccccCCCc
Confidence               5899999998631                    1122    33333333323  5776  3444421      1122


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCccc-----CcCCCccchHHHHhhhhcCCCCCCHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFL-----NKNGKLEVDQEIRDVQISLLPVQPTEECA  268 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~evA  268 (287)
                      ...| .+|++++.+.+.    .+  ++++.+.||++..+....+..     .......    .........++..++|+|
T Consensus       128 ~~~y-~sK~~~e~~~~~----~~--~~~~~lrp~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~Dva  196 (321)
T 3c1o_A          128 ESVL-EKKRIIRRAIEA----AA--LPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIV----IYGTGETKFVLNYEEDIA  196 (321)
T ss_dssp             HHHH-HHHHHHHHHHHH----HT--CCBEEEECCEEHHHHHHHHHCCCSSCCTTSCEE----EETTSCCEEEEECHHHHH
T ss_pred             chHH-HHHHHHHHHHHH----cC--CCeEEEEeceeccccccccccccccccccCceE----EecCCCcceeEeeHHHHH
Confidence            4579 999999988763    23  666778898876543211100     0000000    000000112234699999


Q ss_pred             HHHHHhhccC
Q 042560          269 KAIVNSACRG  278 (287)
Q Consensus       269 ~~i~~l~~~~  278 (287)
                      +.++.+++++
T Consensus       197 ~~~~~~l~~~  206 (321)
T 3c1o_A          197 KYTIKVACDP  206 (321)
T ss_dssp             HHHHHHHHCG
T ss_pred             HHHHHHHhCc
Confidence            9999999764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.54  E-value=1.3e-14  Score=126.65  Aligned_cols=189  Identities=14%  Similarity=0.086  Sum_probs=114.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHH-----HHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL-----REVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++||||+|+||++++++|+++|++|++++|+....     .+..+.+..   ..+.++.+|++|.+++.++++    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~---~~v~~v~~D~~d~~~l~~~~~----   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA---SGANIVHGSIDDHASLVEAVK----   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHT---TTCEEECCCTTCHHHHHHHHH----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHh---CCCEEEEeccCCHHHHHHHHc----
Confidence            46799999999999999999999999999999974321     111122222   247889999999998887765    


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCC------CCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLP------PPR  193 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~------~~~  193 (287)
                         ++|++||++|...                    +.+...++++    +++.  -+++|+  |..+...      .|.
T Consensus        77 ---~~d~vi~~a~~~~--------------------~~~~~~l~~a----a~~~g~v~~~v~--S~~g~~~~~~~~~~p~  127 (308)
T 1qyc_A           77 ---NVDVVISTVGSLQ--------------------IESQVNIIKA----IKEVGTVKRFFP--SEFGNDVDNVHAVEPA  127 (308)
T ss_dssp             ---TCSEEEECCCGGG--------------------SGGGHHHHHH----HHHHCCCSEEEC--SCCSSCTTSCCCCTTH
T ss_pred             ---CCCEEEECCcchh--------------------hhhHHHHHHH----HHhcCCCceEee--cccccCccccccCCcc
Confidence               5899999998531                    1122233333    3332  357763  4444211      222


Q ss_pred             ChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCc-CCCccchHHHHhhhhcCCCCCCHHHHHHHHH
Q 042560          194 MSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNK-NGKLEVDQEIRDVQISLLPVQPTEECAKAIV  272 (287)
Q Consensus       194 ~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~  272 (287)
                      ...| .+|++++.+.+.    .+  ++++.+.||++.++......... ..................++..++|+|+.++
T Consensus       128 ~~~y-~sK~~~e~~~~~----~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~  200 (308)
T 1qyc_A          128 KSVF-EVKAKVRRAIEA----EG--IPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTI  200 (308)
T ss_dssp             HHHH-HHHHHHHHHHHH----HT--CCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHH
T ss_pred             hhHH-HHHHHHHHHHHh----cC--CCeEEEEeceeccccccccccccccCCCCCceEEecCCCceEEEecHHHHHHHHH
Confidence            4578 999999887763    23  66777899988664332211100 0000000000000001122336899999999


Q ss_pred             HhhccC
Q 042560          273 NSACRG  278 (287)
Q Consensus       273 ~l~~~~  278 (287)
                      .++.++
T Consensus       201 ~~l~~~  206 (308)
T 1qyc_A          201 KAVDDP  206 (308)
T ss_dssp             TTSSCG
T ss_pred             HHHhCc
Confidence            999764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.53  E-value=9.5e-15  Score=128.33  Aligned_cols=184  Identities=12%  Similarity=0.121  Sum_probs=113.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++++||||+|+||++++++|+++|++|++++|+.+...+..+.+..   ..+.++.+|++|.+++.++++       ++|
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~---~~v~~v~~Dl~d~~~l~~a~~-------~~d   81 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS---LGAIIVKGELDEHEKLVELMK-------KVD   81 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH---TTCEEEECCTTCHHHHHHHHT-------TCS
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc---CCCEEEEecCCCHHHHHHHHc-------CCC
Confidence            5799999999999999999999999999999987522222222222   237889999999998887764       589


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCC---C---CCChhhhh
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLP---P---PRMSFYNA  199 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~---~---~~~~~Y~a  199 (287)
                      ++||+++...                    +.+.    +.+++.+++.  -+++|+  |..+...   .   |....| .
T Consensus        82 ~vi~~a~~~~--------------------~~~~----~~l~~aa~~~g~v~~~v~--S~~g~~~~~~~~~~p~~~~y-~  134 (318)
T 2r6j_A           82 VVISALAFPQ--------------------ILDQ----FKILEAIKVAGNIKRFLP--SDFGVEEDRINALPPFEALI-E  134 (318)
T ss_dssp             EEEECCCGGG--------------------STTH----HHHHHHHHHHCCCCEEEC--SCCSSCTTTCCCCHHHHHHH-H
T ss_pred             EEEECCchhh--------------------hHHH----HHHHHHHHhcCCCCEEEe--eccccCcccccCCCCcchhH-H
Confidence            9999998531                    1122    3333333332  357764  4333211   1   123568 9


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccC--cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLN--KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      +|++++.+.+.    .+  +++..+.||++..+....+...  ......    .........++..++|+|+.++.++.+
T Consensus       135 sK~~~e~~~~~----~~--~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~Dva~~~~~~l~~  204 (318)
T 2r6j_A          135 RKRMIRRAIEE----AN--IPYTYVSANCFASYFINYLLRPYDPKDEIT----VYGTGEAKFAMNYEQDIGLYTIKVATD  204 (318)
T ss_dssp             HHHHHHHHHHH----TT--CCBEEEECCEEHHHHHHHHHCTTCCCSEEE----EETTSCCEEEEECHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHh----cC--CCeEEEEcceehhhhhhhhccccCCCCceE----EecCCCceeeEeeHHHHHHHHHHHhcC
Confidence            99999887753    22  6677788988765422111000  000000    000000112233689999999999976


Q ss_pred             C
Q 042560          278 G  278 (287)
Q Consensus       278 ~  278 (287)
                      +
T Consensus       205 ~  205 (318)
T 2r6j_A          205 P  205 (318)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.42  E-value=5.2e-13  Score=119.08  Aligned_cols=160  Identities=17%  Similarity=0.080  Sum_probs=111.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcC-----CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRR-----ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G-----~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++++||||+|+||.+++++|+++|     ++|++++|+.....        ....++.++.+|++|.+++.++++.   
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~~~---   69 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--------HEDNPINYVQCDISDPDDSQAKLSP---   69 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--------CCSSCCEEEECCTTSHHHHHHHHTT---
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--------cccCceEEEEeecCCHHHHHHHHhc---
Confidence            4689999999999999999999999     99999999866432        1123588899999999888776642   


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEE-------EEcCCCCCCC----
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKII-------VVASAAGWLP----  190 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv-------~isS~~~~~~----  190 (287)
                       .+++|++||+||...          +++.+.+++|+.++..+++++.+... +-.++|       ++||......    
T Consensus        70 -~~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~l~~a~~~~~~-~~~~~v~~~g~~i~~Ss~~vyg~~~~~  137 (364)
T 2v6g_A           70 -LTDVTHVFYVTWANR----------STEQENCEANSKMFRNVLDAVIPNCP-NLKHISLQTGRKHYMGPFESYGKIESH  137 (364)
T ss_dssp             -CTTCCEEEECCCCCC----------SSHHHHHHHHHHHHHHHHHHHTTTCT-TCCEEEEECCTHHHHCCGGGTTTSCCC
T ss_pred             -CCCCCEEEECCCCCc----------chHHHHHHHhHHHHHHHHHHHHHhcc-ccceEEeccCceEEEechhhccccccC
Confidence             224999999999642          34566889999999888888754311 124676       6777542211    


Q ss_pred             ----------CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          191 ----------PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       191 ----------~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                                .+....|.    +.+.+++.++.+++ .+++..+.|+.+..+..
T Consensus       138 ~~~~~E~~~~~~~~~~y~----~~E~~~~~~~~~~~-~~~~~ilRp~~v~G~~~  186 (364)
T 2v6g_A          138 DPPYTEDLPRLKYMNFYY----DLEDIMLEEVEKKE-GLTWSVHRPGNIFGFSP  186 (364)
T ss_dssp             CSSBCTTSCCCSSCCHHH----HHHHHHHHHHTTST-TCEEEEEEESSEECCCT
T ss_pred             CCCCCccccCCccchhhH----HHHHHHHHHhhcCC-CceEEEECCCceeCCCC
Confidence                      11133462    34555555543331 28899999999988754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.41  E-value=3.5e-13  Score=126.37  Aligned_cols=188  Identities=10%  Similarity=0.027  Sum_probs=124.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++||||+|+||.++++.|+++|++|++++|+..+.+               .+.+|+.+..         .+...++
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~---------------~v~~d~~~~~---------~~~l~~~  202 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG---------------KRFWDPLNPA---------SDLLDGA  202 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT---------------CEECCTTSCC---------TTTTTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc---------------ceeecccchh---------HHhcCCC
Confidence            678999999999999999999999999999999876421               1556776431         2223579


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CCCCCh
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PPPRMS  195 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~~~~~  195 (287)
                      |++||+||.....   . ...+.....+++|+.++..+++++..  ..+.+++|++||.....           ..+...
T Consensus       203 D~Vih~A~~~~~~---~-~~~~~~~~~~~~Nv~gt~~ll~a~a~--~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~~~~  276 (516)
T 3oh8_A          203 DVLVHLAGEPIFG---R-FNDSHKEAIRESRVLPTKFLAELVAE--STQCTTMISASAVGFYGHDRGDEILTEESESGDD  276 (516)
T ss_dssp             SEEEECCCC---------CCGGGHHHHHHHTHHHHHHHHHHHHH--CSSCCEEEEEEEGGGGCSEEEEEEECTTSCCCSS
T ss_pred             CEEEECCCCcccc---c-cchhHHHHHHHHHHHHHHHHHHHHHh--cCCCCEEEEeCcceEecCCCCCCccCCCCCCCcC
Confidence            9999999975432   1 12245667889999999998887432  12236999999865332           011355


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc--CC---------CCCCH
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS--LL---------PVQPT  264 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~p  264 (287)
                      .|+.+|...+.+.+.. .+.  .++++.+.||.+.++... .          ...+......  ..         .+...
T Consensus       277 ~y~~~~~~~E~~~~~~-~~~--gi~~~ilRp~~v~Gp~~~-~----------~~~~~~~~~~g~~~~~g~g~~~~~~i~v  342 (516)
T 3oh8_A          277 FLAEVCRDWEHATAPA-SDA--GKRVAFIRTGVALSGRGG-M----------LPLLKTLFSTGLGGKFGDGTSWFSWIAI  342 (516)
T ss_dssp             HHHHHHHHHHHTTHHH-HHT--TCEEEEEEECEEEBTTBS-H----------HHHHHHTTC---CCCCTTSCCEECEEEH
T ss_pred             hHHHHHHHHHHHHHHH-HhC--CCCEEEEEeeEEECCCCC-h----------HHHHHHHHHhCCCcccCCCCceEceEeH
Confidence            6888888777665432 222  289999999999887421 0          1111111100  00         11238


Q ss_pred             HHHHHHHHHhhccC
Q 042560          265 EECAKAIVNSACRG  278 (287)
Q Consensus       265 ~evA~~i~~l~~~~  278 (287)
                      +|+|++++.++.++
T Consensus       343 ~Dva~ai~~~l~~~  356 (516)
T 3oh8_A          343 DDLTDIYYRAIVDA  356 (516)
T ss_dssp             HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999999764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.40  E-value=4.5e-13  Score=116.28  Aligned_cols=111  Identities=15%  Similarity=0.086  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++||||+||+|+++++.|+++|++|++++|+.++.+++.+++....  .+.++.+|+++.++++++++     
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--~~~~~~~D~~~~~~~~~~~~-----  187 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVK-----  187 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTT-----
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEecCCCHHHHHHHHH-----
Confidence            45789999999999999999999999999999999999988888877765432  25567799999988776654     


Q ss_pred             cCCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHH
Q 042560          123 FGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSA  162 (287)
Q Consensus       123 ~~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~  162 (287)
                        .+|++|||+|.... .+..+....+.+...+++|+.+++
T Consensus       188 --~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          188 --GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             --TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             --hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence              47999999986532 222222223778889999998876

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=99.04  E-value=6.1e-10  Score=92.41  Aligned_cols=82  Identities=22%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             CCCCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC
Q 042560           44 DVAGKVVLITGA----------------SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS  107 (287)
Q Consensus        44 ~~~~k~alVtGa----------------~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~  107 (287)
                      +++||+++||||                +||+|+++|+.|+++|++|++++++.. ++       . .. .+  -.+|++
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-------~-~~-g~--~~~dv~   72 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-------T-PP-FV--KRVDVM   72 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-------C-CT-TE--EEEECC
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-------c-CC-CC--eEEccC
Confidence            578999999999                689999999999999999999988652 11       0 11 12  246777


Q ss_pred             CHHHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       108 ~~~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                      +.+   +.++.+.+.++++|++|||||+....+
T Consensus        73 ~~~---~~~~~v~~~~~~~Dili~~Aav~d~~p  102 (226)
T 1u7z_A           73 TAL---EMEAAVNASVQQQNIFIGCAAVADYRA  102 (226)
T ss_dssp             SHH---HHHHHHHHHGGGCSEEEECCBCCSEEE
T ss_pred             cHH---HHHHHHHHhcCCCCEEEECCcccCCCC
Confidence            754   456677778889999999999876543

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.98  E-value=6.9e-10  Score=96.28  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=88.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|.||.+++++|.++|++|++++|++..             ..+   ..|     ..      ..+....+|.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~-------------~~~---~~~-----~~------~~~~l~~~d~   54 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP-------------GRI---TWD-----EL------AASGLPSCDA   54 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT-------------TEE---EHH-----HH------HHHCCCSCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc-------------Cee---ecc-----hh------hHhhccCCCE
Confidence            48999999999999999999999999999997542             111   122     11      1123457899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||.||.........+ +.+..+..++.|+.++-.+.+.+... ..+..++|+.||.....+           ......|
T Consensus        55 vihla~~~i~~~~~~~-~~~~~~~~~~~~v~~t~~l~~~~~~~-~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~  132 (298)
T 4b4o_A           55 AVNLAGENILNPLRRW-NETFQKEVLGSRLETTQLLAKAITKA-PQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFF  132 (298)
T ss_dssp             EEECCCCCSSCTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHC-SSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHH
T ss_pred             EEEeccCcccchhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHh-CCCceEEEEEeeeeeecCCCCCcccccCCccccchh
Confidence            9999986433222111 11223445666666665555443221 111245676666543321           1223345


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCC
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEI  233 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~  233 (287)
                      +..|...+..     ...... +++..+.||.+..+.
T Consensus       133 ~~~~~~~e~~-----~~~~~~~~~~~~~r~~~v~g~~  164 (298)
T 4b4o_A          133 SNLVTKWEAA-----ARLPGDSTRQVVVRSGVVLGRG  164 (298)
T ss_dssp             HHHHHHHHHH-----HCCSSSSSEEEEEEECEEECTT
T ss_pred             HHHHHHHHHH-----HHhhccCCceeeeeeeeEEcCC
Confidence            5555443321     122334 899999999988763

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.91  E-value=2.7e-09  Score=94.14  Aligned_cols=161  Identities=17%  Similarity=0.068  Sum_probs=105.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-------RLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .+++||||+|.||.+++..|+++|.       +|+++++..  +..+.....+..... ..  . .|+.+.++..+.+  
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~-~~--~-~di~~~~~~~~a~--   78 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PL--L-AGLEATDDPKVAF--   78 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TT--E-EEEEEESCHHHHT--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc-cc--c-CCeEeccChHHHh--
Confidence            4699999999999999999999986       899999875  223322223322111 11  2 4665544444333  


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC--------CC-
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG--------WL-  189 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~--------~~-  189 (287)
                           ...|++||.||.....       .+...+.++.|+.+...+++.+...= .-+.+++++|+...        .. 
T Consensus        79 -----~~~D~Vih~Ag~~~~~-------~~~~~~~~~~Nv~~t~~l~~a~~~~~-~~~~~vvv~snp~~~~~~~~~~~~~  145 (327)
T 1y7t_A           79 -----KDADYALLVGAAPRKA-------GMERRDLLQVNGKIFTEQGRALAEVA-KKDVKVLVVGNPANTNALIAYKNAP  145 (327)
T ss_dssp             -----TTCSEEEECCCCCCCT-------TCCHHHHHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHHTCT
T ss_pred             -----CCCCEEEECCCcCCCC-------CCCHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEeCCchhhhHHHHHHHcC
Confidence                 3689999999975321       13344578889888888888775531 01357888777541        11 


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCC---eE-EEEEeCC
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGD---IG-ITIVTPG  227 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~---i~-v~~i~PG  227 (287)
                      +.+....|+.+|...+.+.+.++..++-.   +| .+.+-|+
T Consensus       146 ~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h  187 (327)
T 1y7t_A          146 GLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH  187 (327)
T ss_dssp             TSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS
T ss_pred             CCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCC
Confidence            24445679999999999999999887632   55 3445554

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.84  E-value=1.7e-09  Score=90.01  Aligned_cols=82  Identities=12%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             CCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH
Q 042560           46 AGKVVLITGA----------------SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV  109 (287)
Q Consensus        46 ~~k~alVtGa----------------~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~  109 (287)
                      +||+++||||                +|++|.++|+.|+++|++|++++|+... ..      ..+ ..+..  .|+   
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~-~~------~~~-~~~~~--~~v---   68 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL-KP------EPH-PNLSI--REI---   68 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC-CC------CCC-TTEEE--EEC---
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc-cc------cCC-CCeEE--EEH---
Confidence            5899999999                7789999999999999999999997542 10      001 11322  343   


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCC
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~  140 (287)
                      ++.++.++.+.+.+++.|++|+|||+....+
T Consensus        69 ~s~~em~~~v~~~~~~~Dili~aAAvsD~~p   99 (232)
T 2gk4_A           69 TNTKDLLIEMQERVQDYQVLIHSMAVSDYTP   99 (232)
T ss_dssp             CSHHHHHHHHHHHGGGCSEEEECSBCCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEcCccccccc
Confidence            4566677777777889999999999876554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.81  E-value=2.7e-08  Score=73.62  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=61.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+++++|+|+ |++|.++++.|.+.| ++|++++|++++.+...    .   ..+..+.+|+++.+++.+++       .
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~-------~   68 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKAL-------G   68 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHT-------T
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHH-------c
Confidence            4578999999 999999999999999 89999999988776543    1   23667889999988777665       3


Q ss_pred             CccEEEEccc
Q 042560          125 RLDHLVTNAG  134 (287)
Q Consensus       125 ~idvli~nag  134 (287)
                      ++|++|++++
T Consensus        69 ~~d~vi~~~~   78 (118)
T 3ic5_A           69 GFDAVISAAP   78 (118)
T ss_dssp             TCSEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6899999996

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.78  E-value=5.2e-08  Score=88.36  Aligned_cols=83  Identities=20%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC---CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRR---ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G---~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++++|+|| |++|+++++.|++.|   .+|++.+|+.++.++..+++...++.++..+.+|++|.+++++++++.     
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-----   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-----   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-----
Confidence            46899999 899999999999998   489999999999998888876544346888999999999999988765     


Q ss_pred             CccEEEEccccC
Q 042560          125 RLDHLVTNAGVV  136 (287)
Q Consensus       125 ~idvli~nag~~  136 (287)
                      ++|++|||+|..
T Consensus        76 ~~DvVin~ag~~   87 (405)
T 4ina_A           76 KPQIVLNIALPY   87 (405)
T ss_dssp             CCSEEEECSCGG
T ss_pred             CCCEEEECCCcc
Confidence            689999999864

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.70  E-value=1.1e-08  Score=80.39  Aligned_cols=77  Identities=17%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHcCCeEEEEeCChhHHH---HHHHHHHhcCCCeeEEEeecCCCH--HHHHHHHHHHHHhcCCccEEEEc
Q 042560           58 GIGKHLAYEYARRRARLVLVARRERQLR---EVADQAELMGSPFALAIPADVSKV--EDCKHFVDVTMEHFGRLDHLVTN  132 (287)
Q Consensus        58 giG~aia~~L~~~G~~vv~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~D~~~~--~~v~~~~~~~~~~~~~idvli~n  132 (287)
                      -++.++++.|++.|++|++..|+....+   +..+.++..+ .+...+++|++++  ++++++++.+.+++|+ |+||||
T Consensus        27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G-~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVnn  104 (157)
T 3gxh_A           27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAG-MDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVHC  104 (157)
T ss_dssp             CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTT-CEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEEC
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcC-CeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEC
Confidence            4678999999999999999988755432   2234444444 4688889999999  9999999999998999 999999


Q ss_pred             cccC
Q 042560          133 AGVV  136 (287)
Q Consensus       133 ag~~  136 (287)
                      +|+.
T Consensus       105 Agg~  108 (157)
T 3gxh_A          105 LANY  108 (157)
T ss_dssp             SBSH
T ss_pred             CCCC
Confidence            9974

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.61  E-value=1.4e-07  Score=76.74  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++|+.++.+...    ..+..    ...|.++.+..+.+.+...  .++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~g~~----~~~d~~~~~~~~~~~~~~~--~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVE----YVGDSRSVDFADEILELTD--GYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCS----EEEETTCSTHHHHHHHHTT--TCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCC----EEeeCCcHHHHHHHHHHhC--CCC
Confidence            6899999999999999999999999999999999887665432    22322    2357776654444433221  136


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA  186 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~  186 (287)
                      +|++|+|+|.          .                 ..+.+++.+++ +|++|.+++..
T Consensus       108 ~D~vi~~~g~----------~-----------------~~~~~~~~l~~-~G~~v~~g~~~  140 (198)
T 1pqw_A          108 VDVVLNSLAG----------E-----------------AIQRGVQILAP-GGRFIELGKKD  140 (198)
T ss_dssp             EEEEEECCCT----------H-----------------HHHHHHHTEEE-EEEEEECSCGG
T ss_pred             CeEEEECCch----------H-----------------HHHHHHHHhcc-CCEEEEEcCCC
Confidence            9999999972          0                 12444555554 68999988754

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=98.59  E-value=4.9e-08  Score=91.39  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=65.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++|||| ||+|++++..|++.|++|++++|+.++.+++.+++.    .++.    ++.|   ++++      ..
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~----~~~~----~~~d---l~~~------~~  422 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG----GKAL----SLTD---LDNY------HP  422 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT----C-CE----ETTT---TTTC--------
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----Ccee----eHHH---hhhc------cc
Confidence            468899999999 599999999999999999999999988887766551    1222    2222   1000      11


Q ss_pred             CCccEEEEccccCCC-----CCCCCCCCCCCcccchhehhhhHH
Q 042560          124 GRLDHLVTNAGVVPM-----CLFEDYTDITKPAPAMDINFWGSA  162 (287)
Q Consensus       124 ~~idvli~nag~~~~-----~~~~~~~~~~~~~~~~~~n~~~~~  162 (287)
                      +.+|++|||+|....     .++.+ ...+.+...+++|+.+..
T Consensus       423 ~~~DilVN~agvg~~~~~~~~~~~~-~~~~~~~~v~Dvny~p~~  465 (523)
T 2o7s_A          423 EDGMVLANTTSMGMQPNVEETPISK-DALKHYALVFDAVYTPRI  465 (523)
T ss_dssp             CCSEEEEECSSTTCTTCTTCCSSCT-TTGGGEEEEEECCCSSSS
T ss_pred             cCceEEEECCCCCCCCCCCCCCCCh-HHcCcCcEEEEEeeCCcc
Confidence            358999999997532     12222 344667888999987653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.58  E-value=2.9e-08  Score=85.91  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++|+++|+|++ |+|+++++.|++.| +|++++|+.++.+++.+++...+.... .+.+|+++.          .+..
T Consensus       125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~~~~----------~~~~  191 (287)
T 1nvt_A          125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSGL----------DVDL  191 (287)
T ss_dssp             CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEECT----------TCCC
T ss_pred             CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccccc-ceeEEEeeH----------HHhh
Confidence            5789999999997 99999999999999 999999999888888776643211000 122344441          3345


Q ss_pred             CCccEEEEccccCCC
Q 042560          124 GRLDHLVTNAGVVPM  138 (287)
Q Consensus       124 ~~idvli~nag~~~~  138 (287)
                      +++|++|||+|....
T Consensus       192 ~~~DilVn~ag~~~~  206 (287)
T 1nvt_A          192 DGVDIIINATPIGMY  206 (287)
T ss_dssp             TTCCEEEECSCTTCT
T ss_pred             CCCCEEEECCCCCCC
Confidence            789999999997643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.55  E-value=2e-07  Score=82.14  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||||.+++..+...|++|++++++.++++.. +++   +..    ..+|.++.+++.+.+.+...  ++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~---g~~----~~~d~~~~~~~~~~~~~~~~--~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI---GFD----AAFNYKTVNSLEEALKKASP--DG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---TCS----EEEETTSCSCHHHHHHHHCT--TC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc---CCc----EEEecCCHHHHHHHHHHHhC--CC
Confidence            689999999999999999999999999999999998876654 322   221    23587774555555555433  58


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|++|+|+|
T Consensus       215 ~d~vi~~~g  223 (333)
T 1v3u_A          215 YDCYFDNVG  223 (333)
T ss_dssp             EEEEEESSC
T ss_pred             CeEEEECCC
Confidence            999999998

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.50  E-value=2.1e-07  Score=85.47  Aligned_cols=78  Identities=15%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++++|+| +|++|+++++.|++.|++|++++|+.++.++..+.+     ..+..+.+|++|.+++.++++       .
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~-----~~~~~~~~Dv~d~~~l~~~l~-------~   68 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV-----QHSTPISLDVNDDAALDAEVA-------K   68 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC-----TTEEEEECCTTCHHHHHHHHT-------T
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc-----CCceEEEeecCCHHHHHHHHc-------C
Confidence            578899998 799999999999999999999999987765543322     136678899999888776653       6


Q ss_pred             ccEEEEccccC
Q 042560          126 LDHLVTNAGVV  136 (287)
Q Consensus       126 idvli~nag~~  136 (287)
                      +|++||+++..
T Consensus        69 ~DvVIn~a~~~   79 (450)
T 1ff9_A           69 HDLVISLIPYT   79 (450)
T ss_dssp             SSEEEECCC--
T ss_pred             CcEEEECCccc
Confidence            89999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.49  E-value=2.3e-07  Score=83.06  Aligned_cols=108  Identities=20%  Similarity=0.169  Sum_probs=73.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++++|+|+ |++|+++++.+...|++|++++|+.++++...+..   + ..   +.+|.++.+++++.+.      
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g-~~---~~~~~~~~~~l~~~~~------  228 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---G-GR---VITLTATEANIKKSVQ------  228 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---T-TS---EEEEECCHHHHHHHHH------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---C-ce---EEEecCCHHHHHHHHh------
Confidence            578999999999 99999999999999999999999988776554322   2 22   4567777777766653      


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                       +.|++|+++|.....      .              +..+.+..++.|+ .+|+||++++..+
T Consensus       229 -~~DvVi~~~g~~~~~------~--------------~~li~~~~l~~mk-~gg~iV~v~~~~g  270 (369)
T 2eez_A          229 -HADLLIGAVLVPGAK------A--------------PKLVTRDMLSLMK-EGAVIVDVAVDQG  270 (369)
T ss_dssp             -HCSEEEECCC---------------------------CCSCHHHHTTSC-TTCEEEECC----
T ss_pred             -CCCEEEECCCCCccc------c--------------chhHHHHHHHhhc-CCCEEEEEecCCC
Confidence             579999999863210      0              0112344555564 3678888887653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.49  E-value=3.2e-10  Score=103.86  Aligned_cols=46  Identities=22%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +++.||+++|||++ +||+++|+.|+..|++|+++++++.+.++...
T Consensus       261 ~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~  306 (488)
T 3ond_A          261 VMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQATM  306 (488)
T ss_dssp             CCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            46899999999997 99999999999999999999999877655443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.46  E-value=1.7e-06  Score=75.44  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC---hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR---ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..++++|+++|+|+ ||+|++++..|++.|+ +|.+++|+   .++.+++.+++....+  +.....++.+.+++.+.+.
T Consensus       149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~--~~~~~~~~~~~~~l~~~l~  225 (315)
T 3tnl_A          149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD--CKAQLFDIEDHEQLRKEIA  225 (315)
T ss_dssp             TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS--CEEEEEETTCHHHHHHHHH
T ss_pred             CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC--CceEEeccchHHHHHhhhc
Confidence            45689999999998 6999999999999999 89999999   8888888887766443  2333456666655544332


Q ss_pred             HHHHhcCCccEEEEccccC
Q 042560          118 VTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~  136 (287)
                             ..|++||+....
T Consensus       226 -------~aDiIINaTp~G  237 (315)
T 3tnl_A          226 -------ESVIFTNATGVG  237 (315)
T ss_dssp             -------TCSEEEECSSTT
T ss_pred             -------CCCEEEECccCC
Confidence                   579999998654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.5e-06  Score=77.00  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|++++..+...|++|++++|+.++.+... +   .+..    ...|.++.+++.+.+.++.+.  +
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~---~g~~----~~~d~~~~~~~~~~~~~~~~~--~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-S---IGGE----VFIDFTKEKDIVGAVLKATDG--G  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-H---TTCC----EEEETTTCSCHHHHHHHHHTS--C
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-H---cCCc----eEEecCccHhHHHHHHHHhCC--C
Confidence            6899999999999999999999999999999999888764332 2   2322    235877666666666665543  7


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       239 ~D~vi~~~g~  248 (347)
T 2hcy_A          239 AHGVINVSVS  248 (347)
T ss_dssp             EEEEEECSSC
T ss_pred             CCEEEECCCc
Confidence            9999999983

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.36  E-value=7.6e-07  Score=76.24  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++...+  .+.  ..|+   +++       .+ 
T Consensus       115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~--~~~~---~~~-------~~-  178 (271)
T 1nyt_A          115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQ--ALSM---DEL-------EG-  178 (271)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEE--ECCS---GGG-------TT-
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--Cee--EecH---HHh-------cc-
Confidence            3578999999999 699999999999999999999999998888777654322  121  1232   221       11 


Q ss_pred             cCCccEEEEccccCCC
Q 042560          123 FGRLDHLVTNAGVVPM  138 (287)
Q Consensus       123 ~~~idvli~nag~~~~  138 (287)
                       ++.|++|||+|....
T Consensus       179 -~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          179 -HEFDLIINATSSGIS  193 (271)
T ss_dssp             -CCCSEEEECCSCGGG
T ss_pred             -CCCCEEEECCCCCCC
Confidence             589999999997543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.33  E-value=1.4e-06  Score=76.42  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++++.++++...+ +   +..    ...|.++.+..+++.+....  ++
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~---g~~----~~~~~~~~~~~~~~~~~~~~--~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A---GAW----QVINYREEDLVERLKEITGG--KK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H---TCS----EEEETTTSCHHHHHHHHTTT--CC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---CCC----EEEECCCccHHHHHHHHhCC--CC
Confidence            68999999999999999999999999999999999877665433 2   222    23577665555444433221  36


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|++|+|+|. .        .                  .+..++.+++ +|+++.+++..+
T Consensus       210 ~D~vi~~~g~-~--------~------------------~~~~~~~l~~-~G~iv~~g~~~~  243 (327)
T 1qor_A          210 VRVVYDSVGR-D--------T------------------WERSLDCLQR-RGLMVSFGNSSG  243 (327)
T ss_dssp             EEEEEECSCG-G--------G------------------HHHHHHTEEE-EEEEEECCCTTC
T ss_pred             ceEEEECCch-H--------H------------------HHHHHHHhcC-CCEEEEEecCCC
Confidence            9999999982 0        0                  2444445543 689999887654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.32  E-value=1.9e-06  Score=75.80  Aligned_cols=80  Identities=18%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++|+.++++.+.+ +   +..    ...|.++.+..+++.+....  .+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~---g~~----~~~d~~~~~~~~~i~~~~~~--~~  214 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-L---GCH----HTINYSTQDFAEVVREITGG--KG  214 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---TCS----EEEETTTSCHHHHHHHHHTT--CC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CCC----EEEECCCHHHHHHHHHHhCC--CC
Confidence            68999999999999999999999999999999999877665433 2   322    23477665544444333221  36


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       215 ~d~vi~~~g~  224 (333)
T 1wly_A          215 VDVVYDSIGK  224 (333)
T ss_dssp             EEEEEECSCT
T ss_pred             CeEEEECCcH
Confidence            9999999984

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.8e-06  Score=79.52  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++++++|+|| ||+|+++++.|++. |++|.+++|+.++.+++.+.    .  .+..+.+|++|.+++.++++    
T Consensus        19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----~--~~~~~~~D~~d~~~l~~~l~----   87 (467)
T 2axq_A           19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----S--GSKAISLDVTDDSALDKVLA----   87 (467)
T ss_dssp             ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----G--TCEEEECCTTCHHHHHHHHH----
T ss_pred             cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----c--CCcEEEEecCCHHHHHHHHc----
Confidence            5667889999998 99999999999998 78999999998887765543    1  25567789999888776653    


Q ss_pred             hcCCccEEEEccccC
Q 042560          122 HFGRLDHLVTNAGVV  136 (287)
Q Consensus       122 ~~~~idvli~nag~~  136 (287)
                         ++|++||+++..
T Consensus        88 ---~~DvVIn~tp~~   99 (467)
T 2axq_A           88 ---DNDVVISLIPYT   99 (467)
T ss_dssp             ---TSSEEEECSCGG
T ss_pred             ---CCCEEEECCchh
Confidence               689999999865

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.27  E-value=1.6e-06  Score=76.61  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++++.++++.+.++   .+..    ...|.++.+++.+.++++..  ++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~----~~~d~~~~~~~~~~~~~~~~--~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD----DAFNYKEESDLTAALKRCFP--NG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS----EEEETTSCSCSHHHHHHHCT--TC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc----eEEecCCHHHHHHHHHHHhC--CC
Confidence            689999999999999999999999999999999998876654322   2322    23476665455555544432  57


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       226 ~d~vi~~~g~  235 (345)
T 2j3h_A          226 IDIYFENVGG  235 (345)
T ss_dssp             EEEEEESSCH
T ss_pred             CcEEEECCCH
Confidence            9999999983

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.23  E-value=4.8e-06  Score=73.90  Aligned_cols=80  Identities=19%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|+++++++++++.. +   ..+..    ...|.++.+..+++.+.. . ..+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~---~~ga~----~~~d~~~~~~~~~~~~~~-~-~~~  239 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-L---QNGAH----EVFNHREVNYIDKIKKYV-G-EKG  239 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-H---HTTCS----EEEETTSTTHHHHHHHHH-C-TTC
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-H---HcCCC----EEEeCCCchHHHHHHHHc-C-CCC
Confidence            589999999999999999999999999999999998876633 2   22322    235766654444433322 1 137


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       240 ~D~vi~~~G~  249 (351)
T 1yb5_A          240 IDIIIEMLAN  249 (351)
T ss_dssp             EEEEEESCHH
T ss_pred             cEEEEECCCh
Confidence            9999999983

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.22  E-value=3.9e-06  Score=74.51  Aligned_cols=80  Identities=19%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++++.++++.+ +++   +..    ..+|.++.+..+++.+...  .++
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---g~~----~~~~~~~~~~~~~~~~~~~--~~~  231 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL---GAA----AGFNYKKEDFSEATLKFTK--GAG  231 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH---TCS----EEEETTTSCHHHHHHHHTT--TSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---CCc----EEEecCChHHHHHHHHHhc--CCC
Confidence            589999999999999999999999999999999998877655 222   222    2356666544444333221  136


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       232 ~d~vi~~~G~  241 (354)
T 2j8z_A          232 VNLILDCIGG  241 (354)
T ss_dssp             EEEEEESSCG
T ss_pred             ceEEEECCCc
Confidence            9999999984

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.21  E-value=7.9e-06  Score=62.42  Aligned_cols=75  Identities=12%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +.+.++|+|+ |.+|.++++.|.++|++|++++++++..++..+    .   ...++..|.++++.++++      ...+
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~~~l~~~------~~~~   70 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---GFDAVIADPTDESFYRSL------DLEG   70 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEECCTTCHHHHHHS------CCTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---CCcEEECCCCCHHHHHhC------Cccc
Confidence            3467999998 779999999999999999999999887765543    1   256778999998876554      2246


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      .|++|.+.+
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            788887775

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.20  E-value=2.1e-06  Score=65.51  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +++++++|+|+ |++|..+++.|.+.|++|++++++.+..+...    ..   ....+..|.++.+.++++      ..+
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~---~~~~~~~d~~~~~~l~~~------~~~   69 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY---ATHAVIANATEENELLSL------GIR   69 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT---CSEEEECCTTCHHHHHTT------TGG
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh---CCEEEEeCCCCHHHHHhc------CCC
Confidence            45678999998 99999999999999999999999877654322    11   134567898886655432      124


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      +.|++|++++.
T Consensus        70 ~~d~vi~~~~~   80 (144)
T 2hmt_A           70 NFEYVIVAIGA   80 (144)
T ss_dssp             GCSEEEECCCS
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.20  E-value=8.1e-06  Score=72.08  Aligned_cols=104  Identities=21%  Similarity=0.191  Sum_probs=71.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++++.++++...+ +   +..    ...|.++.+-.++ +.+..+ ..+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~---ga~----~~~d~~~~~~~~~-~~~~~~-~~~  235 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA-L---GAD----ETVNYTHPDWPKE-VRRLTG-GKG  235 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-H---TCS----EEEETTSTTHHHH-HHHHTT-TTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c---CCC----EEEcCCcccHHHH-HHHHhC-CCC
Confidence            58999999999999999999999999999999999887765432 2   322    1257666432222 222221 137


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|++|+|+|. .        .                  .+.+++.+++ +|+++.+++..+
T Consensus       236 ~d~vi~~~g~-~--------~------------------~~~~~~~l~~-~G~~v~~g~~~~  269 (343)
T 2eih_A          236 ADKVVDHTGA-L--------Y------------------FEGVIKATAN-GGRIAIAGASSG  269 (343)
T ss_dssp             EEEEEESSCS-S--------S------------------HHHHHHHEEE-EEEEEESSCCCS
T ss_pred             ceEEEECCCH-H--------H------------------HHHHHHhhcc-CCEEEEEecCCC
Confidence            9999999982 1        0                  2444455544 689999887654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.19  E-value=3.1e-06  Score=74.53  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+||+|.+++..+...|++|++++++.++.+.+.+++   +..    ...|.++.+..+.+.+. .  .++
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~~----~~~~~~~~~~~~~~~~~-~--~~~  218 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---GFD----GAIDYKNEDLAAGLKRE-C--PKG  218 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---CCS----EEEETTTSCHHHHHHHH-C--TTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CCC----EEEECCCHHHHHHHHHh-c--CCC
Confidence            6899999999999999999999999999999999988766543322   322    23466664443333332 2  247


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       219 ~d~vi~~~g~  228 (336)
T 4b7c_A          219 IDVFFDNVGG  228 (336)
T ss_dssp             EEEEEESSCH
T ss_pred             ceEEEECCCc
Confidence            9999999984

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.18  E-value=2.3e-06  Score=76.05  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CC--CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           46 AG--KVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~--k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +|  ++++|+||+||+|.+++..+...|+ +|++++++.++.+...+++   +..    ..+|.++.+..+. +.+... 
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~~----~~~d~~~~~~~~~-~~~~~~-  228 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GFD----AAINYKKDNVAEQ-LRESCP-  228 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CCS----EEEETTTSCHHHH-HHHHCT-
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CCc----eEEecCchHHHHH-HHHhcC-
Confidence            46  8999999999999999999999999 9999999987766543322   222    2357666433333 332222 


Q ss_pred             cCCccEEEEccc
Q 042560          123 FGRLDHLVTNAG  134 (287)
Q Consensus       123 ~~~idvli~nag  134 (287)
                       +++|++|+|+|
T Consensus       229 -~~~d~vi~~~G  239 (357)
T 2zb4_A          229 -AGVDVYFDNVG  239 (357)
T ss_dssp             -TCEEEEEESCC
T ss_pred             -CCCCEEEECCC
Confidence             27999999998

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.14  E-value=9.3e-06  Score=71.81  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|++++|+||+||+|.+++..+... |++|+++++++++++... ++   +..    ...|.++.+..+++ .+..+. +
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~---g~~----~~~~~~~~~~~~~~-~~~~~~-~  239 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA---GAD----YVINASMQDPLAEI-RRITES-K  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH---TCS----EEEETTTSCHHHHH-HHHTTT-S
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---CCC----EEecCCCccHHHHH-HHHhcC-C
Confidence            6899999999999999999999999 999999999988766542 22   322    22466654433332 222211 5


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|+|+|.
T Consensus       240 ~~d~vi~~~g~  250 (347)
T 1jvb_A          240 GVDAVIDLNNS  250 (347)
T ss_dssp             CEEEEEESCCC
T ss_pred             CceEEEECCCC
Confidence            89999999985

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.14  E-value=2.1e-05  Score=68.50  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC---hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR---ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..++++|+++|+|+ ||.|++++..|++.|+ +|.++.|+   .++.+++.+++....+..+.  ..+..+.+...+.+.
T Consensus       143 ~~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~--~~~~~~l~~~~~~l~  219 (312)
T 3t4e_A          143 GFDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVT--VTDLADQHAFTEALA  219 (312)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEE--EEETTCHHHHHHHHH
T ss_pred             CCCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceE--EechHhhhhhHhhcc
Confidence            45678999999998 8999999999999999 89999999   77888888777654432233  345555433222221


Q ss_pred             HHHHhcCCccEEEEccccC
Q 042560          118 VTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~  136 (287)
                             ..|++||+....
T Consensus       220 -------~~DiIINaTp~G  231 (312)
T 3t4e_A          220 -------SADILTNGTKVG  231 (312)
T ss_dssp             -------HCSEEEECSSTT
T ss_pred             -------CceEEEECCcCC
Confidence                   469999998765

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.13  E-value=8.5e-06  Score=70.06  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .++++|+++|+|+ ||+|++++..|++.|+ +|.+++|+.++.+++.+++...... +.....+..+   +.+.+.    
T Consensus       123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~-~~i~~~~~~~---l~~~l~----  193 (283)
T 3jyo_A          123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGR-EAVVGVDARG---IEDVIA----  193 (283)
T ss_dssp             TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTS-CCEEEECSTT---HHHHHH----
T ss_pred             cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCC-ceEEEcCHHH---HHHHHh----
Confidence            3678999999998 7999999999999999 7999999999999888887654211 2222334322   332222    


Q ss_pred             hcCCccEEEEccccC
Q 042560          122 HFGRLDHLVTNAGVV  136 (287)
Q Consensus       122 ~~~~idvli~nag~~  136 (287)
                         ..|++||+....
T Consensus       194 ---~~DiVInaTp~G  205 (283)
T 3jyo_A          194 ---AADGVVNATPMG  205 (283)
T ss_dssp             ---HSSEEEECSSTT
T ss_pred             ---cCCEEEECCCCC
Confidence               369999998654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.09  E-value=1e-05  Score=74.02  Aligned_cols=109  Identities=21%  Similarity=0.296  Sum_probs=73.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEe--ecCC---------CHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP--ADVS---------KVEDCKH  114 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~D~~---------~~~~v~~  114 (287)
                      +|++++|+||+|++|.+++..+...|++|++++++.++++.+.    ..+.. ..+-.  .|+.         +.++.++
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~----~lGa~-~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR----ALGCD-LVINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCC-CEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCC-EEEecccccccccccccccccchhhhH
Confidence            6899999999999999999999999999999999888766442    23322 11111  1221         1234455


Q ss_pred             HHHHHHHhcC-CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          115 FVDVTMEHFG-RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       115 ~~~~~~~~~~-~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +.+++.+..+ ++|++|+++|..                           ..+..++.++ .+|++|.+++..+
T Consensus       295 ~~~~v~~~~g~g~Dvvid~~G~~---------------------------~~~~~~~~l~-~~G~iv~~G~~~~  340 (447)
T 4a0s_A          295 LAKLVVEKAGREPDIVFEHTGRV---------------------------TFGLSVIVAR-RGGTVVTCGSSSG  340 (447)
T ss_dssp             HHHHHHHHHSSCCSEEEECSCHH---------------------------HHHHHHHHSC-TTCEEEESCCTTC
T ss_pred             HHHHHHHHhCCCceEEEECCCch---------------------------HHHHHHHHHh-cCCEEEEEecCCC
Confidence            5566655544 699999999841                           0134444454 4689999887654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.08  E-value=1.2e-05  Score=71.75  Aligned_cols=101  Identities=16%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh---hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE---RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++|++++|+|| |++|..++..+...|++|++++++.   ++.+.+ +++   +   +..+  | .+ +-.+++ .+ .
T Consensus       178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~---g---a~~v--~-~~-~~~~~~-~~-~  243 (366)
T 2cdc_A          178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET---K---TNYY--N-SS-NGYDKL-KD-S  243 (366)
T ss_dssp             SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH---T---CEEE--E-CT-TCSHHH-HH-H
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh---C---Ccee--c-hH-HHHHHH-HH-h
Confidence            456999999999 9999999999999999999999987   665432 222   2   2333  5 54 222222 22 2


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHH-HHHHHHHhcCCCEEEEEcCCCC
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT-YFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~-~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      .  +++|++|+++|...                          .. +.+++.+++ +|++|+++...+
T Consensus       244 ~--~~~d~vid~~g~~~--------------------------~~~~~~~~~l~~-~G~iv~~g~~~~  282 (366)
T 2cdc_A          244 V--GKFDVIIDATGADV--------------------------NILGNVIPLLGR-NGVLGLFGFSTS  282 (366)
T ss_dssp             H--CCEEEEEECCCCCT--------------------------HHHHHHGGGEEE-EEEEEECSCCCS
T ss_pred             C--CCCCEEEECCCChH--------------------------HHHHHHHHHHhc-CCEEEEEecCCC
Confidence            2  68999999998511                          12 444455543 589998876543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.05  E-value=2.1e-05  Score=69.70  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=58.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|.+++..+...|++|++++++.++++.+.+    .+..    ...|.++.+..+.+.+ ..  .++
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~~~~~~~~~~~~~~~~-~~--~~g  235 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAK----RGINYRSEDFAAVIKA-ET--GQG  235 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHH-HH--SSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC----EEEeCCchHHHHHHHH-Hh--CCC
Confidence            68999999999999999999999999999999999988765433    2322    2245555444333333 22  357


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       236 ~Dvvid~~g~  245 (353)
T 4dup_A          236 VDIILDMIGA  245 (353)
T ss_dssp             EEEEEESCCG
T ss_pred             ceEEEECCCH
Confidence            9999999984

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.02  E-value=5.4e-05  Score=66.92  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=70.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++|+||+|++|..++..+...|++|++++++.++++.+.+    .+.+    ...|..+.+-.+++.+....  .++
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~v~~~~~~--~g~  234 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----IGAA----HVLNEKAPDFEATLREVMKA--EQP  234 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----HTCS----EEEETTSTTHHHHHHHHHHH--HCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC----EEEECCcHHHHHHHHHHhcC--CCC
Confidence            4899999999999999999998999999999999888765432    2322    22455554433333332222  279


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      |++++++|..                           ..+.+++.++ .+|+++.+++..+
T Consensus       235 D~vid~~g~~---------------------------~~~~~~~~l~-~~G~iv~~G~~~~  267 (349)
T 3pi7_A          235 RIFLDAVTGP---------------------------LASAIFNAMP-KRARWIIYGRLDP  267 (349)
T ss_dssp             CEEEESSCHH---------------------------HHHHHHHHSC-TTCEEEECCCSCC
T ss_pred             cEEEECCCCh---------------------------hHHHHHhhhc-CCCEEEEEeccCC
Confidence            9999999841                           0133445554 4789999986554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.97  E-value=3.2e-05  Score=66.13  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|+++|+|+ ||+|++++..|++.|++|++++|+.++.+++.+++...+  .+..  .|+   +++.       + 
T Consensus       115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~~--~~~---~~~~-------~-  178 (272)
T 1p77_A          115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQA--VSM---DSIP-------L-  178 (272)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEE--EEG---GGCC-------C-
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeEE--eeH---HHhc-------c-
Confidence            4678999999998 799999999999999999999999999888877764322  2222  332   1110       1 


Q ss_pred             cCCccEEEEccccCC
Q 042560          123 FGRLDHLVTNAGVVP  137 (287)
Q Consensus       123 ~~~idvli~nag~~~  137 (287)
                       +..|++||+++...
T Consensus       179 -~~~DivIn~t~~~~  192 (272)
T 1p77_A          179 -QTYDLVINATSAGL  192 (272)
T ss_dssp             -SCCSEEEECCCC--
T ss_pred             -CCCCEEEECCCCCC
Confidence             47899999998754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.95  E-value=2.7e-05  Score=68.18  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|.+++..+...|++|+++++++++++...+    .+..    ...|.++.+..+++.+...  ..+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~~~~~~~--~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGAW----ETIDYSHEDVAKRVLELTD--GKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHTT--TCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHHHHHHhC--CCC
Confidence            68999999999999999999999999999999999888764432    2322    2245555443333332221  137


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       210 ~Dvvid~~g~  219 (325)
T 3jyn_A          210 CPVVYDGVGQ  219 (325)
T ss_dssp             EEEEEESSCG
T ss_pred             ceEEEECCCh
Confidence            9999999984

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.95  E-value=2.8e-05  Score=68.31  Aligned_cols=104  Identities=22%  Similarity=0.299  Sum_probs=70.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|.+++..+...|++|++++++.++++.. ++   .+..    ...|..+.+..+++.+.. . ..+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~---~ga~----~~~~~~~~~~~~~~~~~~-~-~~g  217 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KE---YGAE----YLINASKEDILRQVLKFT-N-GKG  217 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH---TTCS----EEEETTTSCHHHHHHHHT-T-TSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HH---cCCc----EEEeCCCchHHHHHHHHh-C-CCC
Confidence            689999999999999999999999999999999998876633 22   2322    224555544333332221 1 136


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|++|+|+|..                           ..+.+++.+++ +|+++.++...+
T Consensus       218 ~D~vid~~g~~---------------------------~~~~~~~~l~~-~G~iv~~G~~~~  251 (334)
T 3qwb_A          218 VDASFDSVGKD---------------------------TFEISLAALKR-KGVFVSFGNASG  251 (334)
T ss_dssp             EEEEEECCGGG---------------------------GHHHHHHHEEE-EEEEEECCCTTC
T ss_pred             ceEEEECCChH---------------------------HHHHHHHHhcc-CCEEEEEcCCCC
Confidence            99999999841                           12344455543 689999886554

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.93  E-value=6.5e-05  Score=66.15  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=69.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+|| |++|..++..+...|++|++++++.++++...    ..+..    ...|.++.+ +.+.+.+..   ++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~lGa~----~~~d~~~~~-~~~~~~~~~---~~  230 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK----ELGAD----LVVNPLKED-AAKFMKEKV---GG  230 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTCS----EEECTTTSC-HHHHHHHHH---SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HCCCC----EEecCCCcc-HHHHHHHHh---CC
Confidence            5889999999 88999999999999999999999988776442    22322    225666543 222232222   58


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|++|+++|..                          ...+..++.+++ +|+++.+++..+
T Consensus       231 ~d~vid~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~~~  265 (339)
T 1rjw_A          231 VHAAVVTAVSK--------------------------PAFQSAYNSIRR-GGACVLVGLPPE  265 (339)
T ss_dssp             EEEEEESSCCH--------------------------HHHHHHHHHEEE-EEEEEECCCCSS
T ss_pred             CCEEEECCCCH--------------------------HHHHHHHHHhhc-CCEEEEecccCC
Confidence            99999999841                          023445555544 689998876543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.92  E-value=2.5e-05  Score=68.84  Aligned_cols=80  Identities=21%  Similarity=0.262  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|..++..+...|++|++++++.++++.+.+    .+..    ...|..+.+..+++.+.. . ..+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga~----~~~~~~~~~~~~~~~~~~-~-~~g  213 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGAA----YVIDTSTAPLYETVMELT-N-GIG  213 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-T-TSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCCc----EEEeCCcccHHHHHHHHh-C-CCC
Confidence            68999999999999999999988899999999999887765433    2322    224555543333332221 1 137


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+|+|.
T Consensus       214 ~Dvvid~~g~  223 (340)
T 3gms_A          214 ADAAIDSIGG  223 (340)
T ss_dssp             EEEEEESSCH
T ss_pred             CcEEEECCCC
Confidence            9999999985

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.89  E-value=5.3e-05  Score=66.54  Aligned_cols=151  Identities=15%  Similarity=0.055  Sum_probs=91.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCC----hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA-------RLVLVARR----ERQLREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      ..+++||||+|.+|.+++..|+.+|.       +|++++++    .++++.....+...... .   ..|+....+..+.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~-~---~~~i~~~~~~~~a   80 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP-L---LAGMTAHADPMTA   80 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCT-T---EEEEEEESSHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhccc-c---cCcEEEecCcHHH
Confidence            45799999999999999999999885       79999998    55555444445432111 1   1233333333333


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC--------
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG--------  187 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~--------  187 (287)
                      +       ...|++|+.||.....      . +.-.+.+..|+.....+++.+...- .-++.+|++|.-..        
T Consensus        81 l-------~~aD~Vi~~ag~~~~~------g-~~r~dl~~~N~~i~~~i~~~i~~~~-~p~a~ii~~SNPv~~~t~~~~~  145 (329)
T 1b8p_A           81 F-------KDADVALLVGARPRGP------G-MERKDLLEANAQIFTVQGKAIDAVA-SRNIKVLVVGNPANTNAYIAMK  145 (329)
T ss_dssp             T-------TTCSEEEECCCCCCCT------T-CCHHHHHHHHHHHHHHHHHHHHHHS-CTTCEEEECSSSHHHHHHHHHH
T ss_pred             h-------CCCCEEEEeCCCCCCC------C-CCHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccCchHHHHHHHHH
Confidence            2       3679999999964321      1 1222345666655555555544321 01368888886321        


Q ss_pred             CC-CCCCChhhhhhHHHHHHHHHHHHHHhC
Q 042560          188 WL-PPPRMSFYNASKAAKIALYETLRVEFG  216 (287)
Q Consensus       188 ~~-~~~~~~~Y~asKaal~~~~~~la~e~~  216 (287)
                      .. +.|....|+.++---..+...++..++
T Consensus       146 ~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg  175 (329)
T 1b8p_A          146 SAPSLPAKNFTAMLRLDHNRALSQIAAKTG  175 (329)
T ss_dssp             TCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence            11 334445688877555666777777776

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.80  E-value=0.00014  Score=62.42  Aligned_cols=77  Identities=14%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..++++|+++|+|+ ||.|++++..|++.|+ +|.+++|+.++.+++.+++...+  .+.....+     ++.       
T Consensus       121 ~~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~~~~~-----~l~-------  185 (281)
T 3o8q_A          121 QVLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKAQAFE-----QLK-------  185 (281)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGG-----GCC-------
T ss_pred             CCCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeEeeHH-----Hhc-------
Confidence            35678999999998 6999999999999996 99999999999888888775433  23333221     110       


Q ss_pred             HhcCCccEEEEccccC
Q 042560          121 EHFGRLDHLVTNAGVV  136 (287)
Q Consensus       121 ~~~~~idvli~nag~~  136 (287)
                         ...|++||+.+..
T Consensus       186 ---~~aDiIInaTp~g  198 (281)
T 3o8q_A          186 ---QSYDVIINSTSAS  198 (281)
T ss_dssp             ---SCEEEEEECSCCC
T ss_pred             ---CCCCEEEEcCcCC
Confidence               3689999998764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.79  E-value=9.7e-05  Score=65.11  Aligned_cols=79  Identities=24%  Similarity=0.281  Sum_probs=54.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|.+++..+...|++|++++++.++.+.+.+ +   +..  ..  .|..  +++.+.+.+... ..+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~---ga~--~v--~~~~--~~~~~~v~~~~~-~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-V---GAD--IV--LPLE--EGWAKAVREATG-GAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H---TCS--EE--EESS--TTHHHHHHHHTT-TSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-c---CCc--EE--ecCc--hhHHHHHHHHhC-CCC
Confidence            68999999999999999999999999999999999888754433 2   322  12  2433  233332222221 126


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+++|.
T Consensus       228 ~Dvvid~~g~  237 (342)
T 4eye_A          228 VDMVVDPIGG  237 (342)
T ss_dssp             EEEEEESCC-
T ss_pred             ceEEEECCch
Confidence            9999999984

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.78  E-value=0.00019  Score=54.09  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=55.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++.++|+|+ |.+|..+++.|.+.|++|++++++++..+...+.    .  .+..+..|.++.+.+.+.      .....
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----~--~~~~~~~d~~~~~~l~~~------~~~~~   70 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----I--DALVINGDCTKIKTLEDA------GIEDA   70 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----C--SSEEEESCTTSHHHHHHT------TTTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----c--CcEEEEcCCCCHHHHHHc------CcccC
Confidence            356889987 9999999999999999999999998776554322    1  245667888877654321      12468


Q ss_pred             cEEEEccc
Q 042560          127 DHLVTNAG  134 (287)
Q Consensus       127 dvli~nag  134 (287)
                      |++|.+++
T Consensus        71 d~vi~~~~   78 (140)
T 1lss_A           71 DMYIAVTG   78 (140)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEeeC
Confidence            99999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.76  E-value=4.5e-05  Score=66.05  Aligned_cols=78  Identities=15%  Similarity=0.272  Sum_probs=57.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++++++++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++.....        ++.+.+++       .+.
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~--------~~~~~~~~-------~~~  201 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS--------AYFSLAEA-------ETR  201 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC--------CEECHHHH-------HHT
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC--------ceeeHHHH-------Hhh
Confidence            578999999998 7999999999999998 999999999888877665422110        11122222       222


Q ss_pred             cCCccEEEEccccCC
Q 042560          123 FGRLDHLVTNAGVVP  137 (287)
Q Consensus       123 ~~~idvli~nag~~~  137 (287)
                      ....|++||+++...
T Consensus       202 ~~~aDivIn~t~~~~  216 (297)
T 2egg_A          202 LAEYDIIINTTSVGM  216 (297)
T ss_dssp             GGGCSEEEECSCTTC
T ss_pred             hccCCEEEECCCCCC
Confidence            346899999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.75  E-value=0.00023  Score=55.03  Aligned_cols=78  Identities=12%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .++.++|.|+ |.+|+.+++.|.+.|++|++++++. +..+...+.. .   ..+.++..|.++++.++++      ...
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~---~~~~~i~gd~~~~~~l~~a------~i~   70 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-G---DNADVIPGDSNDSSVLKKA------GID   70 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-C---TTCEEEESCTTSHHHHHHH------TTT
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-c---CCCeEEEcCCCCHHHHHHc------Chh
Confidence            4567888886 9999999999999999999999974 5444443322 1   1367788999998776543      123


Q ss_pred             CccEEEEccc
Q 042560          125 RLDHLVTNAG  134 (287)
Q Consensus       125 ~idvli~nag  134 (287)
                      +.|.+|.+.+
T Consensus        71 ~ad~vi~~~~   80 (153)
T 1id1_A           71 RCRAILALSD   80 (153)
T ss_dssp             TCSEEEECSS
T ss_pred             hCCEEEEecC
Confidence            6788888775

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.74  E-value=8e-05  Score=66.33  Aligned_cols=74  Identities=19%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +..+++|.|| |++|+.+++.|++ .++|.+.+++.+++++..+        .+..+..|++|.+++.++++       +
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~--------~~~~~~~d~~d~~~l~~~~~-------~   77 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE--------FATPLKVDASNFDKLVEVMK-------E   77 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT--------TSEEEECCTTCHHHHHHHHT-------T
T ss_pred             CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc--------cCCcEEEecCCHHHHHHHHh-------C
Confidence            3446999998 9999999999876 5799999999888765422        35667899999988877764       5


Q ss_pred             ccEEEEccccC
Q 042560          126 LDHLVTNAGVV  136 (287)
Q Consensus       126 idvli~nag~~  136 (287)
                      .|++|++++..
T Consensus        78 ~DvVi~~~p~~   88 (365)
T 3abi_A           78 FELVIGALPGF   88 (365)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEEecCCc
Confidence            79999998764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.72  E-value=8.5e-05  Score=66.15  Aligned_cols=75  Identities=16%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+|+ |++|..++..+...|++|++++++.++.+...++   .+.+    ...|..+.+.+++       ..++
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~----~v~~~~~~~~~~~-------~~~~  251 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD----SFLVSRDQEQMQA-------AAGT  251 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS----EEEETTCHHHHHH-------TTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc----eEEeccCHHHHHH-------hhCC
Confidence            6899999996 9999999999989999999999998876654322   2322    2246666543322       2357


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+++|.
T Consensus       252 ~D~vid~~g~  261 (366)
T 1yqd_A          252 LDGIIDTVSA  261 (366)
T ss_dssp             EEEEEECCSS
T ss_pred             CCEEEECCCc
Confidence            9999999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.69  E-value=0.00013  Score=64.99  Aligned_cols=78  Identities=17%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++++|+|+ |++|++++..+...|++|++++|+.++++...+....    .+..   +..+.+++.+.+       
T Consensus       164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~----~~~~---~~~~~~~~~~~~-------  228 (361)
T 1pjc_A          164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVEL---LYSNSAEIETAV-------  228 (361)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEE---EECCHHHHHHHH-------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc----eeEe---eeCCHHHHHHHH-------
Confidence            467899999999 9999999999999999999999999888766554321    2222   223444443322       


Q ss_pred             CCccEEEEccccC
Q 042560          124 GRLDHLVTNAGVV  136 (287)
Q Consensus       124 ~~idvli~nag~~  136 (287)
                      ...|++|++++..
T Consensus       229 ~~~DvVI~~~~~~  241 (361)
T 1pjc_A          229 AEADLLIGAVLVP  241 (361)
T ss_dssp             HTCSEEEECCCCT
T ss_pred             cCCCEEEECCCcC
Confidence            2689999999863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.68  E-value=0.00015  Score=64.40  Aligned_cols=103  Identities=18%  Similarity=0.267  Sum_probs=69.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|..++..+...|++|++++++.++++.+.+    .+..    ...|..+. ++.+.+.+..  .++
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~-~~~~~~~~~~--~~g  231 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD----RPINYKTE-PVGTVLKQEY--PEG  231 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS----EEEETTTS-CHHHHHHHHC--TTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc----EEEecCCh-hHHHHHHHhc--CCC
Confidence            68999999999999999999999999999999999877654432    2322    12354443 2333333322  147


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|++|+++|.          .                 ..+.+++.+++ +|+++.+++..+
T Consensus       232 ~D~vid~~g~----------~-----------------~~~~~~~~l~~-~G~iv~~g~~~~  265 (362)
T 2c0c_A          232 VDVVYESVGG----------A-----------------MFDLAVDALAT-KGRLIVIGFISG  265 (362)
T ss_dssp             EEEEEECSCT----------H-----------------HHHHHHHHEEE-EEEEEECCCGGG
T ss_pred             CCEEEECCCH----------H-----------------HHHHHHHHHhc-CCEEEEEeCCCC
Confidence            9999999982          0                 12344455554 689999887554

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.66  E-value=3.1e-05  Score=67.12  Aligned_cols=97  Identities=13%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             CCCCCE-EEEecCCC-----------------h-HHHHHHHHHHHcCCeEEEEeCChhHH--------HHHHHHHHhc--
Q 042560           44 DVAGKV-VLITGASS-----------------G-IGKHLAYEYARRRARLVLVARRERQL--------REVADQAELM--   94 (287)
Q Consensus        44 ~~~~k~-alVtGa~~-----------------g-iG~aia~~L~~~G~~vv~~~r~~~~~--------~~~~~~~~~~--   94 (287)
                      ++.||. ++||+|+.                 | .|.++|+.++++|+.|+++.+..+-.        ....+.++..  
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~  112 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGP  112 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhccccc
Confidence            468887 99998876                 6 99999999999999999998753310        0001110000  


Q ss_pred             CCCeeEEEeecCCCHHHHHHHHHHH------------------------------HHhcCCccEEEEccccCCCCC
Q 042560           95 GSPFALAIPADVSKVEDCKHFVDVT------------------------------MEHFGRLDHLVTNAGVVPMCL  140 (287)
Q Consensus        95 ~~~~~~~~~~D~~~~~~v~~~~~~~------------------------------~~~~~~idvli~nag~~~~~~  140 (287)
                      ....+..+..|+.+.+++.+.+.+.                              .+.++..|++|.+|+++.+.+
T Consensus       113 ~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~~  188 (313)
T 1p9o_A          113 ALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYV  188 (313)
T ss_dssp             -CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEEC
T ss_pred             cccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhccC
Confidence            0112445666777666666666443                              234567899999999986553

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.66  E-value=0.00022  Score=62.87  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|++++|+|+ |++|..++..+...|+ +|++++++.++++.+. ++   +.+    ...|..+.+ +.+.+.+... ..
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~---Ga~----~~~~~~~~~-~~~~v~~~~~-g~  235 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV---GAD----YVINPFEED-VVKEVMDITD-GN  235 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH---TCS----EEECTTTSC-HHHHHHHHTT-TS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---CCC----EEECCCCcC-HHHHHHHHcC-CC
Confidence            7899999999 9999999999888999 9999999987765443 22   222    124554432 2222222211 12


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      ++|++|+++|..                          ...+.+++.+++ +|+++.+++..+
T Consensus       236 g~D~vid~~g~~--------------------------~~~~~~~~~l~~-~G~iv~~g~~~~  271 (348)
T 2d8a_A          236 GVDVFLEFSGAP--------------------------KALEQGLQAVTP-AGRVSLLGLYPG  271 (348)
T ss_dssp             CEEEEEECSCCH--------------------------HHHHHHHHHEEE-EEEEEECCCCSS
T ss_pred             CCCEEEECCCCH--------------------------HHHHHHHHHHhc-CCEEEEEccCCC
Confidence            699999999840                          123455555654 689999887544

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.63  E-value=0.0003  Score=64.48  Aligned_cols=86  Identities=21%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEE-Eeec--------CCCHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA-IPAD--------VSKVEDCKHFV  116 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~D--------~~~~~~v~~~~  116 (287)
                      +|.+++|+||+|++|...+..+...|++|++++++.++++.+. ++   +...+.- ...|        ..+.++++++.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~-~l---Ga~~vi~~~~~d~~~~~~~~~~~~~~~~~~~  303 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AM---GAEAIIDRNAEGYRFWKDENTQDPKEWKRFG  303 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH---TCCEEEETTTTTCCSEEETTEECHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-hh---CCcEEEecCcCcccccccccccchHHHHHHH
Confidence            6899999999999999999988889999999999887766442 22   3221110 0011        23456666777


Q ss_pred             HHHHHhcC--CccEEEEcccc
Q 042560          117 DVTMEHFG--RLDHLVTNAGV  135 (287)
Q Consensus       117 ~~~~~~~~--~idvli~nag~  135 (287)
                      +++.+..+  ++|++|.++|.
T Consensus       304 ~~i~~~t~g~g~Dvvid~~G~  324 (456)
T 3krt_A          304 KRIRELTGGEDIDIVFEHPGR  324 (456)
T ss_dssp             HHHHHHHTSCCEEEEEECSCH
T ss_pred             HHHHHHhCCCCCcEEEEcCCc
Confidence            77766543  79999999984

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.58  E-value=0.00043  Score=60.97  Aligned_cols=78  Identities=17%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|...+..+...|++|++++++.++++.+.+    .+.+    ...|..+  +..+.+.+.  ..++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~--~~~~~~~~~--~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGAD----IVLNHKE--SLLNQFKTQ--GIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCS----EEECTTS--CHHHHHHHH--TCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc----EEEECCc--cHHHHHHHh--CCCC
Confidence            68999999999999999999998999999999998887665433    2322    1234332  222333332  2247


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++++++|.
T Consensus       218 ~Dvv~d~~g~  227 (346)
T 3fbg_A          218 VDYVFCTFNT  227 (346)
T ss_dssp             EEEEEESSCH
T ss_pred             ccEEEECCCc
Confidence            9999999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.58  E-value=0.001  Score=58.94  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+......|++ |+++++++++++.+.+ +   . ..+.....|-.+.+++.+.+.+... ..
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l---~-~~~~~~~~~~~~~~~~~~~v~~~t~-g~  251 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I---C-PEVVTHKVERLSAEESAKKIVESFG-GI  251 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H---C-TTCEEEECCSCCHHHHHHHHHHHTS-SC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---c-hhcccccccccchHHHHHHHHHHhC-CC
Confidence            5889999998 99999999888888997 8999999888764433 2   1 2244444554555554444433321 13


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      ++|+++.++|..                          ...+..++.++ .+|+++.++...+
T Consensus       252 g~Dvvid~~g~~--------------------------~~~~~~~~~l~-~~G~iv~~G~~~~  287 (363)
T 3m6i_A          252 EPAVALECTGVE--------------------------SSIAAAIWAVK-FGGKVFVIGVGKN  287 (363)
T ss_dssp             CCSEEEECSCCH--------------------------HHHHHHHHHSC-TTCEEEECCCCCS
T ss_pred             CCCEEEECCCCh--------------------------HHHHHHHHHhc-CCCEEEEEccCCC
Confidence            699999999841                          11234444454 4689999876443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.55  E-value=0.00026  Score=62.33  Aligned_cols=76  Identities=24%  Similarity=0.325  Sum_probs=52.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|..++..+...|++|+++ ++.++++.+ ++   .+.   ..  .| .+.+ ..+.+.+... ..+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~---lGa---~~--i~-~~~~-~~~~~~~~~~-~~g  216 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RD---LGA---TP--ID-ASRE-PEDYAAEHTA-GQG  216 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HH---HTS---EE--EE-TTSC-HHHHHHHHHT-TSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HH---cCC---CE--ec-cCCC-HHHHHHHHhc-CCC
Confidence            68999999999999999999999999999998 777765533 22   232   22  44 3332 3333333222 137


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.++|
T Consensus       217 ~D~vid~~g  225 (343)
T 3gaz_A          217 FDLVYDTLG  225 (343)
T ss_dssp             EEEEEESSC
T ss_pred             ceEEEECCC
Confidence            999999998

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.53  E-value=0.00016  Score=56.07  Aligned_cols=82  Identities=15%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ..+.+..++.++|.|+ |.+|..+++.|.+.|++|++++|+++..+...+   ..   ....+..|.++.+.+.+.    
T Consensus        12 ~~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~---g~~~~~~d~~~~~~l~~~----   80 (155)
T 2g1u_A           12 HMSKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF---SGFTVVGDAAEFETLKEC----   80 (155)
T ss_dssp             -----CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC---CSEEEESCTTSHHHHHTT----
T ss_pred             hhhcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC---CCcEEEecCCCHHHHHHc----
Confidence            3456667889999996 999999999999999999999999887543221   11   244566788776543321    


Q ss_pred             HHhcCCccEEEEccc
Q 042560          120 MEHFGRLDHLVTNAG  134 (287)
Q Consensus       120 ~~~~~~idvli~nag  134 (287)
                        .....|++|.+.+
T Consensus        81 --~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           81 --GMEKADMVFAFTN   93 (155)
T ss_dssp             --TGGGCSEEEECSS
T ss_pred             --CcccCCEEEEEeC
Confidence              1235789988876

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.53  E-value=0.00025  Score=61.20  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|..++..+...|++|+.+++++++.+...+    .+..    ...|..+.++.   .+++    ++
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~~---~~~~----~~  189 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE----EAATYAEVPER---AKAW----GG  189 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS----EEEEGGGHHHH---HHHT----TS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC----EEEECCcchhH---HHHh----cC
Confidence            68999999999999999999999999999999998887664422    2322    12454441222   1222    57


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+ +|.
T Consensus       190 ~d~vid-~g~  198 (302)
T 1iz0_A          190 LDLVLE-VRG  198 (302)
T ss_dssp             EEEEEE-CSC
T ss_pred             ceEEEE-CCH
Confidence            999999 873

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.52  E-value=0.0011  Score=58.11  Aligned_cols=103  Identities=18%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+++|+||+|.+|.+++..|+++|  .+|++++++++  +.....+..... .++..    +.+.++..+.+       .
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~al-------~   75 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEAAL-------T   75 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHHHH-------T
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHHHc-------C
Confidence            479999999999999999999998  68999998776  222223332211 12222    22233443333       3


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIP  170 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  170 (287)
                      ..|++|+.+|......       +.-...+..|+.....+.+.+..
T Consensus        76 gaDvVi~~ag~~~~~g-------~~r~dl~~~N~~~~~~i~~~i~~  114 (326)
T 1smk_A           76 GMDLIIVPAGVPRKPG-------MTRDDLFKINAGIVKTLCEGIAK  114 (326)
T ss_dssp             TCSEEEECCCCCCCSS-------CCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCcCCCCC-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence            6799999999643211       11123456666666555555543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.52  E-value=0.00032  Score=62.74  Aligned_cols=78  Identities=18%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .+++++++|+|+ |++|+++++.+...|++|++++|+.++++...+..   + ..+   ..|..+.+++.+++.      
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g-~~~---~~~~~~~~~l~~~l~------  230 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---C-GRI---HTRYSSAYELEGAVK------  230 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---T-TSS---EEEECCHHHHHHHHH------
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---C-Cee---EeccCCHHHHHHHHc------
Confidence            578999999999 99999999999999999999999988876554332   2 122   223445555544432      


Q ss_pred             CCccEEEEccccC
Q 042560          124 GRLDHLVTNAGVV  136 (287)
Q Consensus       124 ~~idvli~nag~~  136 (287)
                       ..|++|++++..
T Consensus       231 -~aDvVi~~~~~p  242 (377)
T 2vhw_A          231 -RADLVIGAVLVP  242 (377)
T ss_dssp             -HCSEEEECCCCT
T ss_pred             -CCCEEEECCCcC
Confidence             479999998853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.50  E-value=0.00089  Score=50.87  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++ .++|.|+ |.+|..+++.|.+.|++|++++++++..++..+    .   .+..+..|.++++.++++      .
T Consensus         4 ~~~~~-~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a------~   68 (140)
T 3fwz_A            4 VDICN-HALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLA------H   68 (140)
T ss_dssp             CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHT------T
T ss_pred             ccCCC-CEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhc------C
Confidence            44444 4667786 889999999999999999999999988776543    1   256788999998776543      1


Q ss_pred             cCCccEEEEccc
Q 042560          123 FGRLDHLVTNAG  134 (287)
Q Consensus       123 ~~~idvli~nag  134 (287)
                      ..+.|.+|.+.+
T Consensus        69 i~~ad~vi~~~~   80 (140)
T 3fwz_A           69 LECAKWLILTIP   80 (140)
T ss_dssp             GGGCSEEEECCS
T ss_pred             cccCCEEEEECC
Confidence            135688877764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.47  E-value=0.00031  Score=61.86  Aligned_cols=100  Identities=19%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|+|| |++|...+..+...|+ +|+.++++.++++.+.+ +    .+    ...|..+. ++.+.+.++.  .+
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l----a~----~v~~~~~~-~~~~~~~~~~--~~  230 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y----AD----RLVNPLEE-DLLEVVRRVT--GS  230 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T----CS----EEECTTTS-CHHHHHHHHH--SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h----HH----hccCcCcc-CHHHHHHHhc--CC
Confidence            7899999999 9999999988888999 99999998877553322 1    11    12455443 3333333333  34


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASA  185 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~  185 (287)
                      ++|++|.++|.                          -...+..++.+++ +|+++.++..
T Consensus       231 g~D~vid~~g~--------------------------~~~~~~~~~~l~~-~G~iv~~g~~  264 (343)
T 2dq4_A          231 GVEVLLEFSGN--------------------------EAAIHQGLMALIP-GGEARILGIP  264 (343)
T ss_dssp             CEEEEEECSCC--------------------------HHHHHHHHHHEEE-EEEEEECCCC
T ss_pred             CCCEEEECCCC--------------------------HHHHHHHHHHHhc-CCEEEEEecC
Confidence            79999999984                          0123445555554 6899988764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.44  E-value=0.0016  Score=57.39  Aligned_cols=81  Identities=21%  Similarity=0.179  Sum_probs=53.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHH-hc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTME-HF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~-~~  123 (287)
                      +|.+++|+|+ |++|...+..+...|++|+++++++++++.+.    ..+.+    ...|.++ .+..+++.+...+ ..
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~----~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK----NCGAD----VTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTCS----EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH----HhCCC----EEEcCcccccHHHHHHHHhccccC
Confidence            5889999997 89999999888889999999999888765432    22322    1234443 3333333222210 02


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|+++|.
T Consensus       239 ~g~D~vid~~g~  250 (352)
T 1e3j_A          239 DLPNVTIDCSGN  250 (352)
T ss_dssp             SCCSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            469999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.37  E-value=0.00078  Score=56.61  Aligned_cols=83  Identities=16%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh-------------------hHHHHHHHHHHhc-CCCeeEE
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE-------------------RQLREVADQAELM-GSPFALA  101 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~-------------------~~~~~~~~~~~~~-~~~~~~~  101 (287)
                      .++++++++|.|+ ||+|..+++.|++.|. ++.+++++.                   .+.+.+.+.+... +..++..
T Consensus        27 ~~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~  105 (249)
T 1jw9_B           27 EALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITP  105 (249)
T ss_dssp             HHHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEE
Confidence            3567889999997 7999999999999997 899999886                   6777777777653 3345666


Q ss_pred             EeecCCCHHHHHHHHHHHHHhcCCccEEEEccc
Q 042560          102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAG  134 (287)
Q Consensus       102 ~~~D~~~~~~v~~~~~~~~~~~~~idvli~nag  134 (287)
                      +..++++ +...+++       ...|++|.+..
T Consensus       106 ~~~~~~~-~~~~~~~-------~~~DvVi~~~d  130 (249)
T 1jw9_B          106 VNALLDD-AELAALI-------AEHDLVLDCTD  130 (249)
T ss_dssp             ECSCCCH-HHHHHHH-------HTSSEEEECCS
T ss_pred             EeccCCH-hHHHHHH-------hCCCEEEEeCC
Confidence            6666653 3333332       25799988763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.36  E-value=0.0014  Score=58.21  Aligned_cols=79  Identities=14%  Similarity=0.229  Sum_probs=54.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+.+++++++++.+.    ..+.+    ...|.++ .+++.+.+.++..  
T Consensus       192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~----~vi~~~~~~~~~~~~~~~~~~--  260 (374)
T 1cdo_A          192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT----DFVNPNDHSEPISQVLSKMTN--  260 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC----EEECGGGCSSCHHHHHHHHHT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCc----eEEeccccchhHHHHHHHHhC--
Confidence            6889999996 8999999988888999 7999999988876432    22322    1234443 1234444444433  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       261 ~g~D~vid~~g~  272 (374)
T 1cdo_A          261 GGVDFSLECVGN  272 (374)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999984

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.35  E-value=0.00044  Score=58.96  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..++++|+++|+|+ ||.|++++..|++.|+ +|.+++|+.++.+++.+++.. +  .+...  +..+   +.       
T Consensus       115 ~~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~~--~~~~---l~-------  178 (272)
T 3pwz_A          115 GEPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRIS--RYEA---LE-------  178 (272)
T ss_dssp             CCCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEEE--CSGG---GT-------
T ss_pred             CCCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeEe--eHHH---hc-------
Confidence            34678999999998 6999999999999996 999999999998888877643 1  23333  2211   11       


Q ss_pred             HhcCCccEEEEccccC
Q 042560          121 EHFGRLDHLVTNAGVV  136 (287)
Q Consensus       121 ~~~~~idvli~nag~~  136 (287)
                      .  ...|++||+....
T Consensus       179 ~--~~~DivInaTp~g  192 (272)
T 3pwz_A          179 G--QSFDIVVNATSAS  192 (272)
T ss_dssp             T--CCCSEEEECSSGG
T ss_pred             c--cCCCEEEECCCCC
Confidence            0  3679999998654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.34  E-value=0.00046  Score=54.89  Aligned_cols=78  Identities=18%  Similarity=0.162  Sum_probs=57.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++.++.++|.|+ |.+|..+++.|.+. |++|+++++++++.+...+    .+   +..+..|.++.+.+.++     ..
T Consensus        36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g---~~~~~gd~~~~~~l~~~-----~~  102 (183)
T 3c85_A           36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG---RNVISGDATDPDFWERI-----LD  102 (183)
T ss_dssp             CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT---CCEEECCTTCHHHHHTB-----CS
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC---CCEEEcCCCCHHHHHhc-----cC
Confidence            456777888885 99999999999999 9999999999887665432    22   44567898887654322     01


Q ss_pred             cCCccEEEEccc
Q 042560          123 FGRLDHLVTNAG  134 (287)
Q Consensus       123 ~~~idvli~nag  134 (287)
                      ..+.|++|.+.+
T Consensus       103 ~~~ad~vi~~~~  114 (183)
T 3c85_A          103 TGHVKLVLLAMP  114 (183)
T ss_dssp             CCCCCEEEECCS
T ss_pred             CCCCCEEEEeCC
Confidence            246788888765

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.32  E-value=0.00022  Score=54.59  Aligned_cols=71  Identities=14%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +++++|.|+ |++|+++++.|.+.|++|.+++|+.++.++..+++.      ....  +..+.   .+.+       ...
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~------~~~~--~~~~~---~~~~-------~~~   81 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE------YEYV--LINDI---DSLI-------KNN   81 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT------CEEE--ECSCH---HHHH-------HTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC------CceE--eecCH---HHHh-------cCC
Confidence            889999997 999999999999999999999999998877666552      1111  22232   2222       257


Q ss_pred             cEEEEccccC
Q 042560          127 DHLVTNAGVV  136 (287)
Q Consensus       127 dvli~nag~~  136 (287)
                      |++|++.+..
T Consensus        82 Divi~at~~~   91 (144)
T 3oj0_A           82 DVIITATSSK   91 (144)
T ss_dssp             SEEEECSCCS
T ss_pred             CEEEEeCCCC
Confidence            9999998753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.29  E-value=0.0023  Score=54.91  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh------------------hHHHHHHHHHHhc-CCCeeE
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE------------------RQLREVADQAELM-GSPFAL  100 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~------------------~~~~~~~~~~~~~-~~~~~~  100 (287)
                      ...++++++++|.|+ ||+|..+++.|++.|. ++.++|++.                  .+.+.+.+.++.. +..++.
T Consensus        30 ~q~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~  108 (292)
T 3h8v_A           30 DYEKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFE  108 (292)
T ss_dssp             --CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEE
Confidence            456778999999998 8999999999999997 888888764                  4556666666553 445677


Q ss_pred             EEeecCCCHHHHHHHHHHHHHh----cCCccEEEEcc
Q 042560          101 AIPADVSKVEDCKHFVDVTMEH----FGRLDHLVTNA  133 (287)
Q Consensus       101 ~~~~D~~~~~~v~~~~~~~~~~----~~~idvli~na  133 (287)
                      .+..++++.+.++++++.+...    ....|++|.+.
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~  145 (292)
T 3h8v_A          109 VHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV  145 (292)
T ss_dssp             EECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred             EecccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence            7777887777777666544321    13578887554

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.26  E-value=0.0011  Score=59.07  Aligned_cols=76  Identities=24%  Similarity=0.253  Sum_probs=52.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|++++|+||+|++|...+..+...|++|++++ +.++.+.+    +..+.+    ...|..+.+-.+    ++.+ .++
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~----~~lGa~----~v~~~~~~~~~~----~~~~-~~g  248 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV----RKLGAD----DVIDYKSGSVEE----QLKS-LKP  248 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH----HHTTCS----EEEETTSSCHHH----HHHT-SCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH----HHcCCC----EEEECCchHHHH----HHhh-cCC
Confidence            689999999999999999988888999999888 44544332    233322    123554433222    2222 257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|+++|.
T Consensus       249 ~D~vid~~g~  258 (375)
T 2vn8_A          249 FDFILDNVGG  258 (375)
T ss_dssp             BSEEEESSCT
T ss_pred             CCEEEECCCC
Confidence            9999999985

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.25  E-value=0.0011  Score=58.78  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             CC-CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH--HHHHHHHHHHHH-
Q 042560           46 AG-KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV--EDCKHFVDVTME-  121 (287)
Q Consensus        46 ~~-k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~~v~~~~~~~~~-  121 (287)
                      +| .+++|+||+|++|...+......|++++.+.++.+++++..+..+..+.+.+    .|..+.  +++.+.+.++.. 
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~v----i~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQV----ITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEE----EEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEE----EecCccchHHHHHHHHHHhhc
Confidence            57 8999999999999998887778899999988776653333233333343211    232210  222222333220 


Q ss_pred             hcCCccEEEEcccc
Q 042560          122 HFGRLDHLVTNAGV  135 (287)
Q Consensus       122 ~~~~idvli~nag~  135 (287)
                      ..+++|++|.++|.
T Consensus       242 ~~~g~Dvvid~~G~  255 (364)
T 1gu7_A          242 SGGEAKLALNCVGG  255 (364)
T ss_dssp             HTCCEEEEEESSCH
T ss_pred             cCCCceEEEECCCc
Confidence            12479999999984

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.20  E-value=0.0017  Score=57.65  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+++++++++.+.+. ++   +.+    ...|.++ .+++.+.+.++..  
T Consensus       190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l---Ga~----~vi~~~~~~~~~~~~v~~~~~--  258 (373)
T 2fzw_A          190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF---GAT----ECINPQDFSKPIQEVLIEMTD--  258 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH---TCS----EEECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---CCc----eEeccccccccHHHHHHHHhC--
Confidence            6889999996 8999999988888899 7999999988866443 22   322    1234433 1233333333322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       259 ~g~D~vid~~g~  270 (373)
T 2fzw_A          259 GGVDYSFECIGN  270 (373)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.20  E-value=0.0016  Score=53.26  Aligned_cols=73  Identities=22%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|.|+ |.+|..+++.|.++|++|++++++++..++..+..      ...++..|.++++.++++      .....|+
T Consensus         2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~------~~~~i~gd~~~~~~l~~a------~i~~ad~   68 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL------KATIIHGDGSHKEILRDA------EVSKNDV   68 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS------SSEEEESCTTSHHHHHHH------TCCTTCE
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc------CCeEEEcCCCCHHHHHhc------CcccCCE
Confidence            4889997 89999999999999999999999998877654331      256788999998776543      1246788


Q ss_pred             EEEccc
Q 042560          129 LVTNAG  134 (287)
Q Consensus       129 li~nag  134 (287)
                      +|.+.+
T Consensus        69 vi~~~~   74 (218)
T 3l4b_C           69 VVILTP   74 (218)
T ss_dssp             EEECCS
T ss_pred             EEEecC
Confidence            887664

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.16  E-value=0.002  Score=57.04  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+| +|++|...+..+...|++|++++++.++++.+. ++   +.+    ...| .+.+++.+.+.+.... .+
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---Ga~----~vi~-~~~~~~~~~v~~~~~g-~g  257 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-AL---GAD----HGIN-RLEEDWVERVYALTGD-RG  257 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HH---TCS----EEEE-TTTSCHHHHHHHHHTT-CC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-Hc---CCC----EEEc-CCcccHHHHHHHHhCC-CC
Confidence            689999999 799999999888889999999999988766532 22   322    1234 4433444433333321 37


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +|+++.++|..         .                  .+..+..+++ +|+++.++...+
T Consensus       258 ~D~vid~~g~~---------~------------------~~~~~~~l~~-~G~iv~~G~~~~  291 (363)
T 3uog_A          258 ADHILEIAGGA---------G------------------LGQSLKAVAP-DGRISVIGVLEG  291 (363)
T ss_dssp             EEEEEEETTSS---------C------------------HHHHHHHEEE-EEEEEEECCCSS
T ss_pred             ceEEEECCChH---------H------------------HHHHHHHhhc-CCEEEEEecCCC
Confidence            99999999821         0                  1334444543 689999886654

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.15  E-value=0.0025  Score=55.93  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=65.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc--CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR--RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+..+...  |++|+++++++++.+.+.+ +   +.+.    ..|..+.   ....+++.+ .
T Consensus       170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~-l---Ga~~----vi~~~~~---~~~~~~~~~-g  236 (344)
T 2h6e_A          170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFALE-L---GADY----VSEMKDA---ESLINKLTD-G  236 (344)
T ss_dssp             SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-H---TCSE----EECHHHH---HHHHHHHHT-T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-h---CCCE----Eeccccc---hHHHHHhhc-C
Confidence            7899999999 89999998888888  9999999998887654432 2   3221    1233220   122233332 2


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA  186 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~  186 (287)
                      .++|++|.++|..                          ...+..++.+++ +|+++.++...
T Consensus       237 ~g~D~vid~~g~~--------------------------~~~~~~~~~l~~-~G~iv~~g~~~  272 (344)
T 2h6e_A          237 LGASIAIDLVGTE--------------------------ETTYNLGKLLAQ-EGAIILVGMEG  272 (344)
T ss_dssp             CCEEEEEESSCCH--------------------------HHHHHHHHHEEE-EEEEEECCCCS
T ss_pred             CCccEEEECCCCh--------------------------HHHHHHHHHhhc-CCEEEEeCCCC
Confidence            3799999999841                          123444555544 68888887644

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.12  E-value=0.0022  Score=57.80  Aligned_cols=73  Identities=23%  Similarity=0.359  Sum_probs=54.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++|++++|.|+ |++|+.+++.|...|+ +|++++|+.++.++..+++   +   ...  .+.   +++.+.+      
T Consensus       164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~---g---~~~--~~~---~~l~~~l------  225 (404)
T 1gpj_A          164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL---G---GEA--VRF---DELVDHL------  225 (404)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH---T---CEE--CCG---GGHHHHH------
T ss_pred             cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc---C---Cce--ecH---HhHHHHh------
Confidence            468999999998 9999999999999999 8999999988876665554   2   111  222   2333332      


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                       ...|++|+++|.
T Consensus       226 -~~aDvVi~at~~  237 (404)
T 1gpj_A          226 -ARSDVVVSATAA  237 (404)
T ss_dssp             -HTCSEEEECCSS
T ss_pred             -cCCCEEEEccCC
Confidence             267999999763

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.08  E-value=0.0062  Score=52.60  Aligned_cols=74  Identities=23%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeC--ChhHHHHHHHHHHhc--CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVAR--RERQLREVADQAELM--GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r--~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++||||+|.+|.+++..|+.+|.  +++++++  +.++++.....+...  ...++.... |  +.+.           
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~a-----------   67 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYED-----------   67 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGGG-----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHHH-----------
Confidence            589999999999999999999875  6888998  766555433333321  112233322 2  2222           


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                      ....|++|+.+|..
T Consensus        68 ~~~aDvVi~~ag~~   81 (303)
T 1o6z_A           68 TAGSDVVVITAGIP   81 (303)
T ss_dssp             GTTCSEEEECCCCC
T ss_pred             hCCCCEEEEcCCCC
Confidence            24689999999964

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.05  E-value=0.00067  Score=59.21  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++|+||+|++|...+..+...|++|+++++++++++.+.    ..+.+.    ..|..+.+  .+..+++.  .+++|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~----~lGa~~----~i~~~~~~--~~~~~~~~--~~~~d~  219 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAKE----VLAREDVM--AERIRPLD--KQRWAA  219 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCSE----EEECC-----------CC--SCCEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcCCcE----EEecCCcH--HHHHHHhc--CCcccE
Confidence            7999999999999999988889999999999887765442    223221    23544432  12222221  247999


Q ss_pred             EEEcccc
Q 042560          129 LVTNAGV  135 (287)
Q Consensus       129 li~nag~  135 (287)
                      +|+++|.
T Consensus       220 vid~~g~  226 (328)
T 1xa0_A          220 AVDPVGG  226 (328)
T ss_dssp             EEECSTT
T ss_pred             EEECCcH
Confidence            9999984

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.03  E-value=0.0016  Score=55.22  Aligned_cols=66  Identities=20%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+++|.|+ ||.|++++..|++.|.+|.++.|+.++.+++. ++.      +...  +..+.              ...
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~------~~~~--~~~~l--------------~~~  173 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG------CDCF--MEPPK--------------SAF  173 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT------CEEE--SSCCS--------------SCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC------CeEe--cHHHh--------------ccC
Confidence            899999997 89999999999999999999999999888777 442      2222  22221              157


Q ss_pred             cEEEEccccC
Q 042560          127 DHLVTNAGVV  136 (287)
Q Consensus       127 dvli~nag~~  136 (287)
                      |++||+....
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999998654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.02  E-value=0.0036  Score=54.78  Aligned_cols=76  Identities=16%  Similarity=0.265  Sum_probs=54.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+|+ |++|...+..+...|++|+.++++.++.+.+    +..+.+    ...|..+.+..+.+.+    ..++
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~----~~lGa~----~~i~~~~~~~~~~~~~----~~g~  232 (340)
T 3s2e_A          166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLA----RRLGAE----VAVNARDTDPAAWLQK----EIGG  232 (340)
T ss_dssp             TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHTTCS----EEEETTTSCHHHHHHH----HHSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH----HHcCCC----EEEeCCCcCHHHHHHH----hCCC
Confidence            6899999997 8999999988888999999999998876643    223322    1245554333333322    3358


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|++|.++|
T Consensus       233 ~d~vid~~g  241 (340)
T 3s2e_A          233 AHGVLVTAV  241 (340)
T ss_dssp             EEEEEESSC
T ss_pred             CCEEEEeCC
Confidence            999999987

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.00  E-value=0.00039  Score=59.42  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREV   87 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~   87 (287)
                      .++++|+++|+|+ ||.|++++..|++.|+ +|.+++|+.++.+++
T Consensus       113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4578999999998 7999999999999999 899999998875544

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.99  E-value=0.01  Score=51.51  Aligned_cols=147  Identities=16%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeC--ChhHHHHHHHHHHh---cCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVAR--RERQLREVADQAEL---MGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r--~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++||||+|.+|.+++..|+.+|.  +++++++  +.++++.....+..   ..+.++.+...|    +++.+       
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~-------   70 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLR-------   70 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGG-------
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHH-------
Confidence            589999999999999999999885  6888998  66545443333321   111122222211    01111       


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC--------CCCCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW--------LPPPR  193 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~--------~~~~~  193 (287)
                      .....|++||.||.....      . +.-...+..|+.....+++.+...   .++.++++|.-...        .+.|.
T Consensus        71 al~gaD~Vi~~Ag~~~~~------g-~~r~dl~~~N~~i~~~i~~~i~~~---~~~~vlv~SNPv~~~t~~~~k~~~~p~  140 (313)
T 1hye_A           71 IIDESDVVIITSGVPRKE------G-MSRMDLAKTNAKIVGKYAKKIAEI---CDTKIFVITNPVDVMTYKALVDSKFER  140 (313)
T ss_dssp             GGTTCSEEEECCSCCCCT------T-CCHHHHHHHHHHHHHHHHHHHHHH---CCCEEEECSSSHHHHHHHHHHHHCCCT
T ss_pred             HhCCCCEEEECCCCCCCC------C-CcHHHHHHHHHHHHHHHHHHHHHh---CCeEEEEecCcHHHHHHHHHHhhCcCh
Confidence            124689999999964321      1 122235677777666666666543   23344444432111        12444


Q ss_pred             Chhhhh-hHHHHHHHHHHHHHHhC
Q 042560          194 MSFYNA-SKAAKIALYETLRVEFG  216 (287)
Q Consensus       194 ~~~Y~a-sKaal~~~~~~la~e~~  216 (287)
                      ...++. +.---..+...++..++
T Consensus       141 ~rviG~gt~LD~~r~~~~la~~lg  164 (313)
T 1hye_A          141 NQVFGLGTHLDSLRFKVAIAKFFG  164 (313)
T ss_dssp             TSEEECTTHHHHHHHHHHHHHHHT
T ss_pred             hcEEEeCccHHHHHHHHHHHHHhC
Confidence            455665 44445555666666665

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=96.94  E-value=0.0031  Score=56.19  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             CCCEEEEec-CCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITG-ASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtG-a~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.| |+|++|...+..+...|++|+.+++++++++.+.    ..+.+.    ..|..+.+-.+++.+....  .
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~----~~~~~~~~~~~~v~~~t~~--~  239 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK----AQGAVH----VCNAASPTFMQDLTEALVS--T  239 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH----HTTCSC----EEETTSTTHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----hCCCcE----EEeCCChHHHHHHHHHhcC--C
Confidence            678899987 8999999999888889999999999888766443    233221    2344443333333332222  2


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       240 g~d~v~d~~g~  250 (379)
T 3iup_A          240 GATIAFDATGG  250 (379)
T ss_dssp             CCCEEEESCEE
T ss_pred             CceEEEECCCc
Confidence            69999999985

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.90  E-value=0.0055  Score=54.11  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|+|| |++|...+..+... |++|++++++.++++.+.    ..+.+    ...|..+.  +.+.+.++.. ..
T Consensus       186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~----~lGa~----~vi~~~~~--~~~~v~~~~~-g~  253 (359)
T 1h2b_A          186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGAD----HVVDARRD--PVKQVMELTR-GR  253 (359)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCS----EEEETTSC--HHHHHHHHTT-TC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HhCCC----EEEeccch--HHHHHHHHhC-CC
Confidence            6889999999 89999998887778 999999999888765442    23322    12355543  3333333321 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       254 g~Dvvid~~G~  264 (359)
T 1h2b_A          254 GVNVAMDFVGS  264 (359)
T ss_dssp             CEEEEEESSCC
T ss_pred             CCcEEEECCCC
Confidence            69999999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.89  E-value=0.0034  Score=55.65  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh-c
Q 042560           46 AGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH-F  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~  123 (287)
                      +|.+++|+||+|++|...+..+.. .|++|++++++.++.+.+.    ..+.+    ...|..+  ++.   +++.+. .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~----~lGad----~vi~~~~--~~~---~~v~~~~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK----SLGAH----HVIDHSK--PLA---AEVAALGL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH----HTTCS----EEECTTS--CHH---HHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH----HcCCC----EEEeCCC--CHH---HHHHHhcC
Confidence            688999999999999887765555 4889999999988765442    23332    1234333  222   223322 2


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.++|.
T Consensus       238 ~g~Dvvid~~g~  249 (363)
T 4dvj_A          238 GAPAFVFSTTHT  249 (363)
T ss_dssp             CCEEEEEECSCH
T ss_pred             CCceEEEECCCc
Confidence            479999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.86  E-value=0.0045  Score=54.96  Aligned_cols=74  Identities=15%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+ |++|...+..+...|++|+++++++++++.+.+ +   +..    ...|..+.+.+++    +.   ++
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-l---Ga~----~vi~~~~~~~~~~----~~---~g  257 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-L---GAD----EVVNSRNADEMAA----HL---KS  257 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-H---TCS----EEEETTCHHHHHT----TT---TC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CCc----EEeccccHHHHHH----hh---cC
Confidence            6889999998 899999998888899999999999888765432 2   322    1245555443322    21   57


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|.++|.
T Consensus       258 ~Dvvid~~g~  267 (369)
T 1uuf_A          258 FDFILNTVAA  267 (369)
T ss_dssp             EEEEEECCSS
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.84  E-value=0.0067  Score=53.08  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             HHHHhhhhcc-CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh-------------------hHHHHHHH
Q 042560           31 KFLHFVIRTI-NAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE-------------------RQLREVAD   89 (287)
Q Consensus        31 ~~~~~~~~~~-~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~-------------------~~~~~~~~   89 (287)
                      ++.+|+.++. ...++++++++|.|+ ||+|.++++.|+..|. ++.++++..                   .+.+.+.+
T Consensus        17 ~lm~wRll~~~g~~kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~   95 (340)
T 3rui_A           17 KLMKWRILPDLNLDIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAA   95 (340)
T ss_dssp             HHHHHHTCTTCCHHHHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHH
T ss_pred             HHHHHhhcchhhHHHHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHH
Confidence            3344444432 345778999999999 8999999999999997 788887642                   45566666


Q ss_pred             HHHhc-CCCeeEEEeecC
Q 042560           90 QAELM-GSPFALAIPADV  106 (287)
Q Consensus        90 ~~~~~-~~~~~~~~~~D~  106 (287)
                      .++.. +..++..+..++
T Consensus        96 ~L~~inP~v~v~~~~~~i  113 (340)
T 3rui_A           96 SLKRIFPLMDATGVKLSI  113 (340)
T ss_dssp             HHHHHCTTCEEEEECCCC
T ss_pred             HHHHhCCCCEEEEEeccc
Confidence            66554 344556655444

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.80  E-value=0.0044  Score=55.05  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+.+++++++++.+.    ..+.+    ...|..+ .+++.+.+.++..  
T Consensus       191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~----~vi~~~~~~~~~~~~~~~~~~--  259 (374)
T 2jhf_A          191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT----ECVNPQDYKKPIQEVLTEMSN--  259 (374)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS----EEECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc----eEecccccchhHHHHHHHHhC--
Confidence            6889999995 8999999988888999 8999999988766442    22322    1234433 1234443433322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       260 ~g~D~vid~~g~  271 (374)
T 2jhf_A          260 GGVDFSFEVIGR  271 (374)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCcEEEECCCC
Confidence            479999999984

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.80  E-value=0.013  Score=51.69  Aligned_cols=79  Identities=18%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC--CHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVS--KVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~v~~~~~~~~~~  122 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+++++++++++.+.    ..+.+    ...|..  +.++..+.+.+... 
T Consensus       171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~----~vi~~~~~~~~~~~~~i~~~~~-  240 (356)
T 1pl8_A          171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGAD----LVLQISKESPQEIARKVEGQLG-  240 (356)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS----EEEECSSCCHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC----EEEcCcccccchHHHHHHHHhC-
Confidence            5889999996 8999999888778899 8999999888765432    22322    123444  22333222222222 


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                       +++|++|.++|.
T Consensus       241 -~g~D~vid~~g~  252 (356)
T 1pl8_A          241 -CKPEVTIECTGA  252 (356)
T ss_dssp             -SCCSEEEECSCC
T ss_pred             -CCCCEEEECCCC
Confidence             479999999974

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.78  E-value=0.0025  Score=56.35  Aligned_cols=75  Identities=21%  Similarity=0.222  Sum_probs=52.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+|+ |++|...+..+...|++|+.+++++++++.+.+ +   +...    ..|..+.++.   .+++.   ++
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-l---Ga~~----v~~~~~~~~~---~~~~~---~~  243 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-M---GADH----YIATLEEGDW---GEKYF---DT  243 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H---TCSE----EEEGGGTSCH---HHHSC---SC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c---CCCE----EEcCcCchHH---HHHhh---cC
Confidence            6899999999 999999998888899999999998887664432 2   3221    1343332011   12221   58


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|.++|.
T Consensus       244 ~D~vid~~g~  253 (360)
T 1piw_A          244 FDLIVVCASS  253 (360)
T ss_dssp             EEEEEECCSC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.78  E-value=0.0085  Score=53.36  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC--CHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIPADVS--KVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~v~~~~~~~~~~  122 (287)
                      +|.+++|+| +|++|...+..+...| ++|+++++++++++.+.    ..+.+  .  ..|..  +.+++.+.+.+....
T Consensus       195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~--~--vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD--L--TLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS--E--EEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc--E--EEeccccCcchHHHHHHHHhCC
Confidence            589999999 8999999998888899 59999999988765433    23322  1  13433  133333333322211


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                       .++|++|.++|.
T Consensus       266 -~g~Dvvid~~g~  277 (380)
T 1vj0_A          266 -RGADFILEATGD  277 (380)
T ss_dssp             -SCEEEEEECSSC
T ss_pred             -CCCcEEEECCCC
Confidence             269999999984

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.75  E-value=0.017  Score=50.50  Aligned_cols=115  Identities=21%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC--e-----EEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA--R-----LVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~--~-----vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .++.||||+|.+|.+++..|+..|.  +     +++++.++  +.++.....+..........+.  .++  ...+    
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~--~~~--~~~~----   75 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI--ATD--KEEI----   75 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE--EES--CHHH----
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEE--EcC--CcHH----
Confidence            4699999999999999999998875  5     99999975  3555555555442211111111  111  1111    


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CC-EEEEEcC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KG-KIIVVAS  184 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g-~iv~isS  184 (287)
                         ....-|++|+.||.....      . +.-.+.++.|....    +.+.+.+.+.  ++ .++++|.
T Consensus        76 ---~~~daDvVvitAg~prkp------G-~tR~dll~~N~~i~----~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           76 ---AFKDLDVAILVGSMPRRD------G-MERKDLLKANVKIF----KCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             ---HTTTCSEEEECCSCCCCT------T-CCTTTTHHHHHHHH----HHHHHHHHHHSCTTCEEEECSS
T ss_pred             ---HhCCCCEEEEeCCCCCCC------C-CCHHHHHHHHHHHH----HHHHHHHHHhCCCCeEEEEcCC
Confidence               124679999999864221      1 22233556666544    4444444433  25 4666664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.73  E-value=0.0035  Score=55.77  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=54.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+++++++++++.+    +..+.+    ...|..+ .+++.+.+.++..  
T Consensus       193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a----~~lGa~----~vi~~~~~~~~~~~~i~~~~~--  261 (378)
T 3uko_A          193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA----KKFGVN----EFVNPKDHDKPIQEVIVDLTD--  261 (378)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH----HTTTCC----EEECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCc----EEEccccCchhHHHHHHHhcC--
Confidence            6889999998 9999999888888899 899999998886633    223322    1234432 2333343333332  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       262 gg~D~vid~~g~  273 (378)
T 3uko_A          262 GGVDYSFECIGN  273 (378)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            489999999984

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.67  E-value=0.008  Score=53.32  Aligned_cols=79  Identities=10%  Similarity=-0.028  Sum_probs=53.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|.+++|.||+|++|...+......|++|+.+. +.++++ ..   +..+.+    ...|..+.+- .+.+.+..  .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~-~~---~~lGa~----~vi~~~~~~~-~~~v~~~t--~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD-LA---KSRGAE----EVFDYRAPNL-AQTIRTYT--KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH-HH---HHTTCS----EEEETTSTTH-HHHHHHHT--TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH-HH---HHcCCc----EEEECCCchH-HHHHHHHc--cC
Confidence            4789999999999999999998888999998886 555544 22   233322    2235554332 22222222  24


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|+++.++|.
T Consensus       231 ~~d~v~d~~g~  241 (371)
T 3gqv_A          231 NLRYALDCITN  241 (371)
T ss_dssp             CCCEEEESSCS
T ss_pred             CccEEEECCCc
Confidence            69999999984

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.65  E-value=0.0075  Score=53.56  Aligned_cols=79  Identities=13%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+++++++++++.+.    ..+.+    ...|.++ .+++.+.+.++..  
T Consensus       195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~----~vi~~~~~~~~~~~~v~~~~~--  263 (376)
T 1e3i_A          195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT----DCLNPRELDKPVQDVITELTA--  263 (376)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS----EEECGGGCSSCHHHHHHHHHT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc----EEEccccccchHHHHHHHHhC--
Confidence            6889999996 8999999888888899 8999999988766432    22322    1234432 1233343443333  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       264 ~g~Dvvid~~G~  275 (376)
T 1e3i_A          264 GGVDYSLDCAGT  275 (376)
T ss_dssp             SCBSEEEESSCC
T ss_pred             CCccEEEECCCC
Confidence            479999999984

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.64  E-value=0.0026  Score=54.42  Aligned_cols=47  Identities=13%  Similarity=0.277  Sum_probs=40.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVAD   89 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~   89 (287)
                      ..++++|+++|.|+ ||.|++++..|.+.|+ +|.++.|+.++.+++++
T Consensus       117 ~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~  164 (282)
T 3fbt_A          117 RVEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG  164 (282)
T ss_dssp             TCCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred             CCCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            34578999999998 6999999999999998 89999999988766544

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.63  E-value=0.0075  Score=54.17  Aligned_cols=79  Identities=18%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+++++++++++.+ +++   +.+    ...|..+.+-.+++ .++.. ..
T Consensus       213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~----~vi~~~~~~~~~~i-~~~t~-g~  281 (404)
T 3ip1_A          213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KEL---GAD----HVIDPTKENFVEAV-LDYTN-GL  281 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---TCS----EEECTTTSCHHHHH-HHHTT-TC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---CCC----EEEcCCCCCHHHHH-HHHhC-CC
Confidence            6889999998 8999998888888999 899999988876543 222   322    12354443322222 22211 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       282 g~D~vid~~g~  292 (404)
T 3ip1_A          282 GAKLFLEATGV  292 (404)
T ss_dssp             CCSEEEECSSC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.63  E-value=0.041  Score=47.72  Aligned_cols=46  Identities=28%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC--hhHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR--ERQLREVA   88 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~--~~~~~~~~   88 (287)
                      .|+++.+++.|.|+ |.+|.+++..|+..|. +|++.+++  .+..+...
T Consensus         3 ~m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a   51 (315)
T 3tl2_A            3 AMTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKA   51 (315)
T ss_dssp             -CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH
T ss_pred             CcccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhh
Confidence            35667788999997 9999999999999999 99999998  45444433

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.62  E-value=0.0017  Score=57.46  Aligned_cols=50  Identities=22%  Similarity=0.391  Sum_probs=36.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG   95 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~   95 (287)
                      +|.+++|.||+|++|...+......|++++.+.++.++.++..+..+..+
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lG  216 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLG  216 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcC
Confidence            68999999999999999888777789998887765443222233334444

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.62  E-value=0.005  Score=54.65  Aligned_cols=105  Identities=20%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH-Hhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM-EHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~~  123 (287)
                      +|.+++|.|+ |++|...+......|+ +|+++++++++.+-. +++   +..    ...|.++.+-.+.+ .+.. ...
T Consensus       182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l---Ga~----~vi~~~~~~~~~~i-~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEV---GAT----ATVDPSAGDVVEAI-AGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHH---TCS----EEECTTSSCHHHHH-HSTTSSST
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHc---CCC----EEECCCCcCHHHHH-HhhhhccC
Confidence            5889999998 8999998888888999 888898888776532 332   322    22455443322222 2100 112


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      +++|++|.++|..                          ...+..+..+++ +|+++.++...+
T Consensus       252 gg~Dvvid~~G~~--------------------------~~~~~~~~~l~~-~G~vv~~G~~~~  288 (370)
T 4ej6_A          252 GGVDVVIECAGVA--------------------------ETVKQSTRLAKA-GGTVVILGVLPQ  288 (370)
T ss_dssp             TCEEEEEECSCCH--------------------------HHHHHHHHHEEE-EEEEEECSCCCT
T ss_pred             CCCCEEEECCCCH--------------------------HHHHHHHHHhcc-CCEEEEEeccCC
Confidence            4799999998741                          123344455544 688888876544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.56  E-value=0.0068  Score=54.51  Aligned_cols=43  Identities=19%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      .+.+++++|.|+ |.+|+++++.+...|++|++++++.+.++..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            467999999997 8999999999999999999999998877654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.55  E-value=0.0045  Score=54.40  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=50.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+ |++|...+..+...|++|+++++++++.+.+.    ..+.+.+.      ++.+.+.+          +
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~v~------~~~~~~~~----------~  234 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL----SMGVKHFY------TDPKQCKE----------E  234 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH----HTTCSEEE------SSGGGCCS----------C
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH----hcCCCeec------CCHHHHhc----------C
Confidence            6899999997 89999998888889999999999988776432    23333222      33333211          7


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       235 ~D~vid~~g~  244 (348)
T 3two_A          235 LDFIISTIPT  244 (348)
T ss_dssp             EEEEEECCCS
T ss_pred             CCEEEECCCc
Confidence            9999999985

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.54  E-value=0.0083  Score=50.34  Aligned_cols=82  Identities=21%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh-------------------hHHHHHHHHHHhc-CCCeeEE
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE-------------------RQLREVADQAELM-GSPFALA  101 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~-------------------~~~~~~~~~~~~~-~~~~~~~  101 (287)
                      .++++++++|.|+ ||+|.++++.|++.|. ++.+++++.                   .+.+.+.+.++.. +..++..
T Consensus        24 ~~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~  102 (251)
T 1zud_1           24 QKLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA  102 (251)
T ss_dssp             HHHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            4567889999998 7899999999999998 777876531                   4566666666553 3445555


Q ss_pred             EeecCCCHHHHHHHHHHHHHhcCCccEEEEcc
Q 042560          102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA  133 (287)
Q Consensus       102 ~~~D~~~~~~v~~~~~~~~~~~~~idvli~na  133 (287)
                      +..+++ .+...++++       ..|++|++.
T Consensus       103 ~~~~~~-~~~~~~~~~-------~~DvVi~~~  126 (251)
T 1zud_1          103 LQQRLT-GEALKDAVA-------RADVVLDCT  126 (251)
T ss_dssp             ECSCCC-HHHHHHHHH-------HCSEEEECC
T ss_pred             EeccCC-HHHHHHHHh-------cCCEEEECC
Confidence            555544 233333332       357777664

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.54  E-value=0.029  Score=48.86  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .+..++++.|+|+ |.+|.+++..|+..|.  +++++++++++++.....+.....  ..+.... |  +.+        
T Consensus         5 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~--~~~--------   72 (326)
T 3vku_A            5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A--EYS--------   72 (326)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGG--------
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C--cHH--------
Confidence            3456778999997 9999999999999987  899999998887766655543211  1233222 2  221        


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                         ....-|++|..+|.....   ..+.    .+.+..|..    +.+.+.+.+.+.  ++.++++|.
T Consensus        73 ---a~~~aDiVvi~ag~~~kp---G~tR----~dL~~~N~~----I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           73 ---DAKDADLVVITAGAPQKP---GETR----LDLVNKNLK----ILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             ---GGTTCSEEEECCCCC---------------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             ---HhcCCCEEEECCCCCCCC---CchH----HHHHHHHHH----HHHHHHHHHHhcCCceEEEEccC
Confidence               224679999999974221   1111    123444443    334444444433  366777664

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.53  E-value=0.0084  Score=53.16  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|+|+ |++|...+......|+ +|+++++++++++.+.    ..+.+    ...|..+ .+++.+.+.++..  
T Consensus       191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~----~vi~~~~~~~~~~~~i~~~t~--  259 (373)
T 1p0f_A          191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT----ECLNPKDYDKPIYEVICEKTN--  259 (373)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS----EEECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc----EEEecccccchHHHHHHHHhC--
Confidence            5889999996 8999999888778899 7999999888765432    22322    1234332 1233333333322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus       260 gg~Dvvid~~g~  271 (373)
T 1p0f_A          260 GGVDYAVECAGR  271 (373)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999974

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.53  E-value=0.0037  Score=55.24  Aligned_cols=75  Identities=16%  Similarity=0.106  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+|+ |++|...+..+...|++|++++++.++.+...+   ..+.+.    ..|..+.+.++       +..++
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~~----vi~~~~~~~~~-------~~~~g  244 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGADD----YVIGSDQAKMS-------ELADS  244 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCSC----EEETTCHHHHH-------HSTTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCce----eeccccHHHHH-------HhcCC
Confidence            6889999996 999999998888889999999998877654332   223221    23444543322       22257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|.++|.
T Consensus       245 ~D~vid~~g~  254 (357)
T 2cf5_A          245 LDYVIDTVPV  254 (357)
T ss_dssp             EEEEEECCCS
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.52  E-value=0.0054  Score=53.22  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|...+..+...|++|+.++++ ++. +..+   ..+.+.    ..|..+.+.+.       +...+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~-~~~~---~lGa~~----~i~~~~~~~~~-------~~~~g  215 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNH-AFLK---ALGAEQ----CINYHEEDFLL-------AISTP  215 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHH-HHHH---HHTCSE----EEETTTSCHHH-------HCCSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chH-HHHH---HcCCCE----EEeCCCcchhh-------hhccC
Confidence            68999999999999999999998999999988753 332 2333   233321    23544433222       12257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       216 ~D~v~d~~g~  225 (321)
T 3tqh_A          216 VDAVIDLVGG  225 (321)
T ss_dssp             EEEEEESSCH
T ss_pred             CCEEEECCCc
Confidence            9999999884

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.48  E-value=0.056  Score=45.94  Aligned_cols=42  Identities=14%  Similarity=0.198  Sum_probs=36.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      +++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus         5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            56777776 7899999999999999999999999887776654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.45  E-value=0.047  Score=47.65  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ...+.+++.|+|+ |.+|.+++..|+.+|.  ++++++++.++++.....+....  .........  .|.+.       
T Consensus        15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~~-------   84 (331)
T 4aj2_A           15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYSV-------   84 (331)
T ss_dssp             --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGGG-------
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHHH-------
Confidence            3456788999998 8999999999999987  89999999888777666664321  111112211  12221       


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVAS  184 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS  184 (287)
                          ...-|++|..+|.....   .    +.=.+.+..|..-...+.+.+...  .-++.++++|.
T Consensus        85 ----~~~aDiVvi~aG~~~kp---G----~tR~dL~~~N~~I~~~i~~~i~~~--~p~a~vlvvtN  137 (331)
T 4aj2_A           85 ----TANSKLVIITAGARQQE---G----ESRLNLVQRNVNIFKFIIPNVVKY--SPQCKLLIVSN  137 (331)
T ss_dssp             ----GTTEEEEEECCSCCCCT---T----CCGGGGHHHHHHHHHHHHHHHHHH--CTTCEEEECSS
T ss_pred             ----hCCCCEEEEccCCCCCC---C----ccHHHHHHHHHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence                24679999999974321   1    111234555554333344443332  11367777764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.43  E-value=0.0067  Score=49.13  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      ++.|+||+|.+|.++++.|++.|++|.+++|+.++.++..+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~   43 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE   43 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            478999999999999999999999999999998877665544

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.42  E-value=0.027  Score=48.82  Aligned_cols=114  Identities=20%  Similarity=0.110  Sum_probs=64.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           49 VVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.|+||+|.+|..++..|++.|  .+++++++++  .+.....+..... .++....    ..++.++.+       ..
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~-------~~   68 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCL-------KG   68 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHH-------TT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHh-------CC
Confidence            58999999999999999999988  6899999987  2333333332111 1122110    012233222       36


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcC
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVAS  184 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS  184 (287)
                      .|++|+.+|......       +.-.+.+..|......+.+.+.+.-  -++.++++|-
T Consensus        69 aDvVvi~ag~~~~~g-------~~r~dl~~~n~~i~~~i~~~i~~~~--p~a~viv~sN  118 (314)
T 1mld_A           69 CDVVVIPAGVPRKPG-------MTRDDLFNTNATIVATLTAACAQHC--PDAMICIISN  118 (314)
T ss_dssp             CSEEEECCSCCCCTT-------CCGGGGHHHHHHHHHHHHHHHHHHC--TTSEEEECSS
T ss_pred             CCEEEECCCcCCCCC-------CcHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEECC
Confidence            799999999753211       1112234555544444444433321  1367887654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.40  E-value=0.0073  Score=53.26  Aligned_cols=76  Identities=16%  Similarity=0.274  Sum_probs=51.1

Q ss_pred             CCCCEEEEecCCChHHHHH-HHHH-HHcCCe-EEEEeCChh---HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHL-AYEY-ARRRAR-LVLVARRER---QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~ai-a~~L-~~~G~~-vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +++.+++|+|| |++|... +..+ ...|++ |+.++++.+   +.+.+ +   ..+   +..+  |..+.+ +.+ +.+
T Consensus       171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~---~lG---a~~v--~~~~~~-~~~-i~~  238 (357)
T 2b5w_A          171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-E---ELD---ATYV--DSRQTP-VED-VPD  238 (357)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-H---HTT---CEEE--ETTTSC-GGG-HHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-H---HcC---Cccc--CCCccC-HHH-HHH
Confidence            44589999999 9999998 6655 467997 999999887   65543 2   223   2233  554432 333 344


Q ss_pred             HHHhcCCccEEEEcccc
Q 042560          119 TMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       119 ~~~~~~~idvli~nag~  135 (287)
                      +   .+++|++|.++|.
T Consensus       239 ~---~gg~Dvvid~~g~  252 (357)
T 2b5w_A          239 V---YEQMDFIYEATGF  252 (357)
T ss_dssp             H---SCCEEEEEECSCC
T ss_pred             h---CCCCCEEEECCCC
Confidence            3   2489999999984

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.40  E-value=0.015  Score=51.12  Aligned_cols=82  Identities=22%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      +..-++++++.|+|++|.+|.+++..++.+|.  +|+++|.+.++++.....+....  ..++.. .   +|   ..+.+
T Consensus         2 ~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d---~~~al   74 (343)
T 3fi9_A            2 SLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SD---IKEAL   74 (343)
T ss_dssp             CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SC---HHHHH
T ss_pred             CccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CC---HHHHh
Confidence            34456788999999999999999999999984  89999999887776555554321  111221 1   11   11111


Q ss_pred             HHHHHhcCCccEEEEccccC
Q 042560          117 DVTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~  136 (287)
                             ..-|++|.++|..
T Consensus        75 -------~dADvVvitaG~p   87 (343)
T 3fi9_A           75 -------TDAKYIVSSGGAP   87 (343)
T ss_dssp             -------TTEEEEEECCC--
T ss_pred             -------CCCCEEEEccCCC
Confidence                   3679999999863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.39  E-value=0.05  Score=47.38  Aligned_cols=114  Identities=12%  Similarity=0.049  Sum_probs=69.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+.+++.|+|+ |.+|.+++..|+..|.  ++++++++.++++.....+...   ....+.....|   .+         
T Consensus         3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~~---------   69 (326)
T 3pqe_A            3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---YE---------   69 (326)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---GG---------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---HH---------
Confidence            34667999997 9999999999999997  8999999988877665555432   11123333222   11         


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                        ....-|++|..+|.....      . +.-...+..|.    .+.+.+.+.+.+.  ++.++++|.
T Consensus        70 --a~~~aDvVvi~ag~p~kp------G-~~R~dL~~~N~----~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           70 --DCKDADIVCICAGANQKP------G-ETRLELVEKNL----KIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             --GGTTCSEEEECCSCCCCT------T-CCHHHHHHHHH----HHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             --HhCCCCEEEEecccCCCC------C-ccHHHHHHHHH----HHHHHHHHHHHHhcCCeEEEEcCC
Confidence              124679999999863211      1 11112334443    3445555544433  367777764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.38  E-value=0.002  Score=54.22  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVA   88 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~   88 (287)
                      ++++ +++|.|+ ||.|++++..|.+.|+ +|.+++|+.++.+++.
T Consensus       106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la  149 (253)
T 3u62_A          106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALD  149 (253)
T ss_dssp             CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred             CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            4678 8999998 8999999999999998 8999999988766543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.37  E-value=0.014  Score=52.20  Aligned_cols=80  Identities=19%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+......|+ +|+++++++++++.+.    ..+   +.  ..|.++.+.+.+.+.+... ..
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~lG---a~--~i~~~~~~~~~~~v~~~t~-g~  253 (398)
T 1kol_A          185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQG---FE--IADLSLDTPLHEQIAALLG-EP  253 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTT---CE--EEETTSSSCHHHHHHHHHS-SS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----HcC---Cc--EEccCCcchHHHHHHHHhC-CC
Confidence            6889999995 9999998887777899 6889999888766442    223   22  2455443323222222221 13


Q ss_pred             CccEEEEccccC
Q 042560          125 RLDHLVTNAGVV  136 (287)
Q Consensus       125 ~idvli~nag~~  136 (287)
                      ++|++|.++|..
T Consensus       254 g~Dvvid~~G~~  265 (398)
T 1kol_A          254 EVDCAVDAVGFE  265 (398)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CCCEEEECCCCc
Confidence            699999999863

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.25  E-value=0.027  Score=52.92  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh-------------------hHHHHHHHHHHhc-CCCeeEE
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE-------------------RQLREVADQAELM-GSPFALA  101 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~-------------------~~~~~~~~~~~~~-~~~~~~~  101 (287)
                      .++++++++|.|+ ||+|.++++.|+..|. ++.++|++.                   .+.+.+.+.++.. +..++..
T Consensus       322 ekL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~  400 (615)
T 4gsl_A          322 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG  400 (615)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEE
Confidence            4678999999999 7999999999999997 788888742                   4566666666664 3445666


Q ss_pred             EeecC-------CCHHHHHHHHHHHHHhcCCccEEEEccc
Q 042560          102 IPADV-------SKVEDCKHFVDVTMEHFGRLDHLVTNAG  134 (287)
Q Consensus       102 ~~~D~-------~~~~~v~~~~~~~~~~~~~idvli~nag  134 (287)
                      +..++       ++++....-.+.+.+.....|++|.+..
T Consensus       401 ~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD  440 (615)
T 4gsl_A          401 VKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD  440 (615)
T ss_dssp             ECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS
T ss_pred             eeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC
Confidence            65544       2221111111122222235799988763

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.23  E-value=0.007  Score=53.23  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  123 (287)
                      +|.+++|.|+ |++|...+......|+ +|+++++++++++.+ .++   +.+    ...|..+.+-.+    ++.+.. 
T Consensus       166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l---Ga~----~vi~~~~~~~~~----~v~~~t~  232 (352)
T 3fpc_A          166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEY---GAT----DIINYKNGDIVE----QILKATD  232 (352)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHH---TCC----EEECGGGSCHHH----HHHHHTT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHh---CCc----eEEcCCCcCHHH----HHHHHcC
Confidence            5888999996 8999998888888899 799999988776533 222   322    123443333222    223322 


Q ss_pred             -CCccEEEEcccc
Q 042560          124 -GRLDHLVTNAGV  135 (287)
Q Consensus       124 -~~idvli~nag~  135 (287)
                       .++|+++.++|.
T Consensus       233 g~g~D~v~d~~g~  245 (352)
T 3fpc_A          233 GKGVDKVVIAGGD  245 (352)
T ss_dssp             TCCEEEEEECSSC
T ss_pred             CCCCCEEEECCCC
Confidence             269999999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.23  E-value=0.021  Score=50.50  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|+|+ |++|...+..+...|+ +|+.+++++++++.+. ++   +.+    ...|..+.+-.++ +.+..  .+
T Consensus       190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga~----~vi~~~~~~~~~~-~~~~~--~g  257 (371)
T 1f8f_A          190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL---GAT----HVINSKTQDPVAA-IKEIT--DG  257 (371)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH---TCS----EEEETTTSCHHHH-HHHHT--TS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---CCC----EEecCCccCHHHH-HHHhc--CC
Confidence            5889999996 8999999888777899 6999999888765442 22   322    1234443322222 22221  13


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       258 g~D~vid~~g~  268 (371)
T 1f8f_A          258 GVNFALESTGS  268 (371)
T ss_dssp             CEEEEEECSCC
T ss_pred             CCcEEEECCCC
Confidence            79999999984

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.23  E-value=0.0055  Score=50.61  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .+.++|.|+ |.+|+.+++.|.+.|+ |++++++++..++..     .   .+.++..|.++.+.++++      .....
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~---~~~~i~gd~~~~~~l~~a------~i~~a   72 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S---GANFVHGDPTRVSDLEKA------NVRGA   72 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T---TCEEEESCTTCHHHHHHT------TCTTC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c---CCeEEEcCCCCHHHHHhc------Ccchh
Confidence            456888898 8999999999999999 999999988765443     1   266778898887765443      12356


Q ss_pred             cEEEEccc
Q 042560          127 DHLVTNAG  134 (287)
Q Consensus       127 dvli~nag  134 (287)
                      |.+|.+.+
T Consensus        73 d~vi~~~~   80 (234)
T 2aef_A           73 RAVIVDLE   80 (234)
T ss_dssp             SEEEECCS
T ss_pred             cEEEEcCC
Confidence            77776654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.14  E-value=0.042  Score=48.02  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+..+... |++|+.++++.++++.+.    ..+.+.  .  .|..+ +..+++ .+... ..
T Consensus       171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lGa~~--~--i~~~~-~~~~~v-~~~t~-g~  238 (345)
T 3jv7_A          171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVGADA--A--VKSGA-GAADAI-RELTG-GQ  238 (345)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTTCSE--E--EECST-THHHHH-HHHHG-GG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCE--E--EcCCC-cHHHHH-HHHhC-CC
Confidence            5889999998 99999887766666 779999999988766432    233321  1  23222 222222 22221 12


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG  187 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~  187 (287)
                      ++|+++.++|..                          ...+..+..+++ +|+++.++...+
T Consensus       239 g~d~v~d~~G~~--------------------------~~~~~~~~~l~~-~G~iv~~G~~~~  274 (345)
T 3jv7_A          239 GATAVFDFVGAQ--------------------------STIDTAQQVVAV-DGHISVVGIHAG  274 (345)
T ss_dssp             CEEEEEESSCCH--------------------------HHHHHHHHHEEE-EEEEEECSCCTT
T ss_pred             CCeEEEECCCCH--------------------------HHHHHHHHHHhc-CCEEEEECCCCC
Confidence            799999999841                          123444455544 689998876544

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.13  E-value=0.013  Score=52.41  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+.++++.++++.+    +..+   +..  .|..+.+.+.+.+.+... ..
T Consensus       185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~~lG---a~~--i~~~~~~~~~~~~~~~~~-g~  253 (398)
T 2dph_A          185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLL----SDAG---FET--IDLRNSAPLRDQIDQILG-KP  253 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH----HTTT---CEE--EETTSSSCHHHHHHHHHS-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcC---CcE--EcCCCcchHHHHHHHHhC-CC
Confidence            6889999997 9999998887777899 899999998876543    2223   222  455443321222222221 12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       254 g~Dvvid~~g~  264 (398)
T 2dph_A          254 EVDCGVDAVGF  264 (398)
T ss_dssp             CEEEEEECSCT
T ss_pred             CCCEEEECCCC
Confidence            69999999985

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.12  E-value=0.01  Score=53.05  Aligned_cols=43  Identities=21%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      .+.+++++|.|+ |++|+++++.+...|++|++++++..+.+..
T Consensus       169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            568999999997 8999999999999999999999998876654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.05  E-value=0.029  Score=52.63  Aligned_cols=63  Identities=13%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC-------------------hhHHHHHHHHHHhc-CCCeeEE
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR-------------------ERQLREVADQAELM-GSPFALA  101 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~-~~~~~~~  101 (287)
                      .++++++++|.|+ ||+|.++++.|+..|. ++.++|..                   ..+.+.+.+.++.. +..++..
T Consensus       323 ~kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~  401 (598)
T 3vh1_A          323 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG  401 (598)
T ss_dssp             HHHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence            5778999999998 7999999999999998 78888643                   24667777777663 4445666


Q ss_pred             EeecC
Q 042560          102 IPADV  106 (287)
Q Consensus       102 ~~~D~  106 (287)
                      +..++
T Consensus       402 ~~~~I  406 (598)
T 3vh1_A          402 VKLSI  406 (598)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            66554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.05  E-value=0.023  Score=51.86  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.+++++|.+.|.|. |+.|.++|+.|.++|++|.+.+++........+.++..+   +.+..... . ++   .     
T Consensus         3 ~~~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~g---i~~~~g~~-~-~~---~-----   68 (451)
T 3lk7_A            3 TITTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEG---IKVVCGSH-P-LE---L-----   68 (451)
T ss_dssp             -CCTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTT---CEEEESCC-C-GG---G-----
T ss_pred             chhhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCC---CEEEECCC-h-HH---h-----
Confidence            346678999999999 789999999999999999999997642222333444433   33332221 1 11   0     


Q ss_pred             HhcCC-ccEEEEccccCC
Q 042560          121 EHFGR-LDHLVTNAGVVP  137 (287)
Q Consensus       121 ~~~~~-idvli~nag~~~  137 (287)
                        ... .|.+|.+.|+..
T Consensus        69 --~~~~~d~vv~spgi~~   84 (451)
T 3lk7_A           69 --LDEDFCYMIKNPGIPY   84 (451)
T ss_dssp             --GGSCEEEEEECTTSCT
T ss_pred             --hcCCCCEEEECCcCCC
Confidence              123 899999999854

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.05  E-value=0.014  Score=51.61  Aligned_cols=48  Identities=17%  Similarity=0.311  Sum_probs=42.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      .+++||+++|.|. |.+|..+|+.|.+.|++|++.+++.+++++..++.
T Consensus       169 ~~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~  216 (364)
T 1leh_A          169 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE  216 (364)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             cCCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence            3789999999998 78999999999999999999999988877666654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.05  E-value=0.031  Score=46.67  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++.|.|++|.+|+.+++.+.+. |++++...+..+.+++...   . .   +. +..|+++++...+.+....+.  +++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~-~---~D-vvIDfT~p~a~~~~~~~a~~~--g~~   71 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---G-N---TE-VVIDFTHPDVVMGNLEFLIDN--GIH   71 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---T-T---CC-EEEECSCTTTHHHHHHHHHHT--TCE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---c-C---Cc-EEEEccChHHHHHHHHHHHHc--CCC
Confidence            5889999999999999999876 8888866554444443322   1 1   22 668999999998888877664  788


Q ss_pred             EEEEccccC
Q 042560          128 HLVTNAGVV  136 (287)
Q Consensus       128 vli~nag~~  136 (287)
                      +++-..|..
T Consensus        72 ~VigTTG~~   80 (245)
T 1p9l_A           72 AVVGTTGFT   80 (245)
T ss_dssp             EEECCCCCC
T ss_pred             EEEcCCCCC
Confidence            999888854

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.04  E-value=0.096  Score=45.94  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=66.9

Q ss_pred             ccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCChh--HHHHHHHHHHhcC-CCeeEEEeecCCC
Q 042560           39 TINAEDVAGKVVLITGASSGIGKHLAYEYARRRA-------RLVLVARRER--QLREVADQAELMG-SPFALAIPADVSK  108 (287)
Q Consensus        39 ~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~~--~~~~~~~~~~~~~-~~~~~~~~~D~~~  108 (287)
                      ...+-+++.-++.|+||+|+||..++..|++...       ++.+.+.++.  .++....+++... .........+  |
T Consensus        16 ~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~--~   93 (345)
T 4h7p_A           16 TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA--D   93 (345)
T ss_dssp             ------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES--C
T ss_pred             ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC--C
Confidence            3444556677899999999999999999998643       6889998653  3444444444322 1112222221  2


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CC-EEEEEc
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KG-KIIVVA  183 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g-~iv~is  183 (287)
                      ..   +       .+..-|++|-.+|......       +.=.+.++.|.    .+++.+.+.+.+.  ++ .++.+|
T Consensus        94 ~~---~-------a~~~advVvi~aG~prkpG-------mtR~DLl~~Na----~I~~~~~~~i~~~a~~~~~vlvvs  150 (345)
T 4h7p_A           94 PR---V-------AFDGVAIAIMCGAFPRKAG-------MERKDLLEMNA----RIFKEQGEAIAAVAASDCRVVVVG  150 (345)
T ss_dssp             HH---H-------HTTTCSEEEECCCCCCCTT-------CCHHHHHHHHH----HHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             hH---H-------HhCCCCEEEECCCCCCCCC-------CCHHHHHHHhH----HHHHHHHHHHHhhccCceEEEEeC
Confidence            11   1       1246799999999753221       11123445444    4555555555442  34 444544

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.98  E-value=0.072  Score=46.34  Aligned_cols=113  Identities=17%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc----C-CCeeEEEeecCCCHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM----G-SPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~----~-~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      |+.+++.|.|| |.+|.+++..|+..|. +|+++++++++++....++...    + ..++.. ..|   .+.       
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~~a-------   72 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---YAA-------   72 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---GGG-------
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---HHH-------
Confidence            45678999998 9999999999999998 9999999988766444333221    1 112221 122   221       


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                          +..-|++|..+|......       +.-.+.+..|.    .+.+.+.+.+.+.  ++.++++|.
T Consensus        73 ----~~~aDiVIiaag~p~k~G-------~~R~dl~~~N~----~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           73 ----IEGADVVIVTAGVPRKPG-------MSRDDLLGINL----KVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ----GTTCSEEEECCSCCCC------------CHHHHHHH----HHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ----HCCCCEEEEccCcCCCCC-------CCHHHHHHhhH----HHHHHHHHHHHHHCCCeEEEecCC
Confidence                235799999998642211       11112233333    4445555544432  367777664

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.98  E-value=0.05  Score=48.30  Aligned_cols=84  Identities=17%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC-----------CCHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV-----------SKVEDC  112 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-----------~~~~~v  112 (287)
                      .+++++++|.|+ |.+|..+++.+...|++|++++|+.++++...+ +   +   ..++..|+           ...+..
T Consensus       181 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-l---G---a~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          181 TVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-V---G---AQWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             EECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-T---T---CEECCCC-------------CHHHH
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---C---CeEEeccccccccccchhhhhHHHH
Confidence            357889999999 799999999999999999999999988776544 1   2   12222211           011112


Q ss_pred             HHHHHHHHHhcCCccEEEEcccc
Q 042560          113 KHFVDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       113 ~~~~~~~~~~~~~idvli~nag~  135 (287)
                      ..-.+.+.+.....|++|+++..
T Consensus       253 ~~~~~~l~e~l~~aDIVI~tv~i  275 (381)
T 3p2y_A          253 AQQQQALEDAITKFDIVITTALV  275 (381)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCC
T ss_pred             hhhHHHHHHHHhcCCEEEECCCC
Confidence            22233444444678999998755

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.73  E-value=0.082  Score=44.87  Aligned_cols=86  Identities=9%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC---eEEEEeCChhHHHHHHHHH---------HhcCCCeeEEEeecCCCHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA---RLVLVARRERQLREVADQA---------ELMGSPFALAIPADVSKVEDCKH  114 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~---~vv~~~r~~~~~~~~~~~~---------~~~~~~~~~~~~~D~~~~~~v~~  114 (287)
                      .+++.|.|+ |-+|.++++.|.+.|+   +|.+++|+.++.++..+..         +......+.++..   .++.+++
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~~   78 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIKM   78 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHHH
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHHH
Confidence            355777887 8999999999999998   8999999998877765531         1111123444433   3567778


Q ss_pred             HHHHHHHh-cCCccEEEEccccC
Q 042560          115 FVDVTMEH-FGRLDHLVTNAGVV  136 (287)
Q Consensus       115 ~~~~~~~~-~~~idvli~nag~~  136 (287)
                      +++++... ..+=.++|++++..
T Consensus        79 vl~~l~~~~l~~~~iiiS~~agi  101 (280)
T 3tri_A           79 VCEELKDILSETKILVISLAVGV  101 (280)
T ss_dssp             HHHHHHHHHHTTTCEEEECCTTC
T ss_pred             HHHHHHhhccCCCeEEEEecCCC
Confidence            88877664 33323788776544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.71  E-value=0.025  Score=48.65  Aligned_cols=74  Identities=20%  Similarity=0.321  Sum_probs=53.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++.+++++|.|+ |++|+++++.|...|++|++.+|+.++.+...+    .+   +..+  +   .+++++++     
T Consensus       152 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~----~g---~~~~--~---~~~l~~~l-----  213 (300)
T 2rir_A          152 DYTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARITE----MG---LVPF--H---TDELKEHV-----  213 (300)
T ss_dssp             SSCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT---CEEE--E---GGGHHHHS-----
T ss_pred             CCCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC---CeEE--c---hhhHHHHh-----
Confidence            46789999999997 899999999999999999999999876544322    22   2221  1   12333222     


Q ss_pred             hcCCccEEEEcccc
Q 042560          122 HFGRLDHLVTNAGV  135 (287)
Q Consensus       122 ~~~~idvli~nag~  135 (287)
                        ...|++++++..
T Consensus       214 --~~aDvVi~~~p~  225 (300)
T 2rir_A          214 --KDIDICINTIPS  225 (300)
T ss_dssp             --TTCSEEEECCSS
T ss_pred             --hCCCEEEECCCh
Confidence              367999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.70  E-value=0.017  Score=52.88  Aligned_cols=73  Identities=21%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|.|+ |-.|..+|+.|.++|++|++++++++.++.+.+.+      .+..+.+|.++++.++++-      ...-|+
T Consensus         5 ~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Ag------i~~ad~   71 (461)
T 4g65_A            5 KIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAG------AQDADM   71 (461)
T ss_dssp             EEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHT------TTTCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcC------CCcCCE
Confidence            4888888 79999999999999999999999999888766543      3667788888877765551      124566


Q ss_pred             EEEccc
Q 042560          129 LVTNAG  134 (287)
Q Consensus       129 li~nag  134 (287)
                      +|...+
T Consensus        72 ~ia~t~   77 (461)
T 4g65_A           72 LVAVTN   77 (461)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            665443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.65  E-value=0.037  Score=49.85  Aligned_cols=73  Identities=11%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ..++|.|. |-+|..+++.|.+.|..|++++++++..+...+    .+   +.++.+|.++.+.++++      ...+.|
T Consensus         5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g---~~vi~GDat~~~~L~~a------gi~~A~   70 (413)
T 3l9w_A            5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG---MKVFYGDATRMDLLESA------GAAKAE   70 (413)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT---CCCEESCTTCHHHHHHT------TTTTCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC---CeEEEcCCCCHHHHHhc------CCCccC
Confidence            45888997 789999999999999999999999998776543    11   44566788877665444      113456


Q ss_pred             EEEEccc
Q 042560          128 HLVTNAG  134 (287)
Q Consensus       128 vli~nag  134 (287)
                      ++|.+.+
T Consensus        71 ~viv~~~   77 (413)
T 3l9w_A           71 VLINAID   77 (413)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            6666554

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.61  E-value=0.013  Score=49.87  Aligned_cols=45  Identities=24%  Similarity=0.467  Sum_probs=39.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      ++++++++|.|+ |++|+++++.|.+.|++|.+++|+.++.+++.+
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~  170 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ  170 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTT
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            567899999997 799999999999999999999999877665543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.60  E-value=0.014  Score=49.64  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+++||.++|.|+++-.|+.++..|.+.|++|.++.++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            4578999999999999999999999999999999987653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.60  E-value=0.2  Score=43.55  Aligned_cols=112  Identities=15%  Similarity=0.034  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---C-CCeeEEEeecCCCHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---G-SPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ..+++.|+|+ |.+|.+++..|+..|.  ++++.+.++++++.....+...   . ..++ ....|..+           
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i-~~t~d~~~-----------   86 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKI-VSGKDYSV-----------   86 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEE-EEESSSCS-----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeE-EEcCCHHH-----------
Confidence            4578999999 9999999999999997  8999999988877655544332   1 1112 11233321           


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                         +..-|++|..+|......   ...    .+.+..|.    .+.+.+.+.+.+.  ++.++++|.
T Consensus        87 ---~~daDiVIitaG~p~kpG---~tR----~dll~~N~----~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           87 ---SAGSKLVVITAGARQQEG---ESR----LNLVQRNV----NIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             ---CSSCSEEEECCSCCCCSS---CCT----TGGGHHHH----HHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ---hCCCCEEEEeCCCCCCCC---CCH----HHHHHhhH----HHHHHHHHHHHhhCCCceEEeCCC
Confidence               246799999999743221   111    12344444    3344444444332  367777764

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.57  E-value=0.027  Score=49.73  Aligned_cols=83  Identities=17%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCCh-------------------hHHHHHHHHHHhc-CCCeeE
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRE-------------------RQLREVADQAELM-GSPFAL  100 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~-------------------~~~~~~~~~~~~~-~~~~~~  100 (287)
                      ..++++++++|.|+ ||+|.++++.|+..|. ++.+++++.                   .+.+.+.+.+... +..++.
T Consensus       113 q~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~  191 (353)
T 3h5n_A          113 QDKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVS  191 (353)
T ss_dssp             HHHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEE
Confidence            45567889999998 8999999999999997 788888752                   2344445555442 334555


Q ss_pred             EEeecCCCHHHHHHHHHHHHHhcCCccEEEEcc
Q 042560          101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA  133 (287)
Q Consensus       101 ~~~~D~~~~~~v~~~~~~~~~~~~~idvli~na  133 (287)
                      .+..++++...+.+        ..+.|++|.+.
T Consensus       192 ~~~~~i~~~~~~~~--------~~~~DlVvd~~  216 (353)
T 3h5n_A          192 EIALNINDYTDLHK--------VPEADIWVVSA  216 (353)
T ss_dssp             EEECCCCSGGGGGG--------SCCCSEEEECC
T ss_pred             EeecccCchhhhhH--------hccCCEEEEec
Confidence            66656554432211        23566666544

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.49  E-value=0.026  Score=47.42  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      .++++ +++|.|+ |++|+++++.|.+.|++|.+++|+.++.++..++.
T Consensus       113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~  159 (263)
T 2d5c_A          113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF  159 (263)
T ss_dssp             CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred             CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence            36788 8999997 77999999999999999999999988777666554

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=95.48  E-value=0.013  Score=50.96  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=34.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +++|+||+|++|...+..+...|++|+++++++++++.+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~  191 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL  191 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            799999999999999998888999999999987776544

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.47  E-value=0.099  Score=48.95  Aligned_cols=63  Identities=16%  Similarity=0.123  Sum_probs=47.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      ..+.++|.|. |-.|+.+++.|.+.|..+++++.+++..++..+..      .+.++.+|.++++.++++
T Consensus       126 ~~~hviI~G~-g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a  188 (565)
T 4gx0_A          126 TRGHILIFGI-DPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQE------GFKVVYGSPTDAHVLAGL  188 (565)
T ss_dssp             CCSCEEEESC-CHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSC------SSEEEESCTTCHHHHHHT
T ss_pred             cCCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------CCeEEEeCCCCHHHHHhc
Confidence            3456888887 67999999999999999999999998876654320      256677777776665543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.47  E-value=0.32  Score=44.70  Aligned_cols=42  Identities=19%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.
T Consensus         6 ~kVgVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~   47 (483)
T 3mog_A            6 QTVAVIGS-GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDG   47 (483)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence            34566666 8999999999999999999999999988776554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.47  E-value=0.034  Score=47.58  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLRE   86 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~   86 (287)
                      ..++.|++++|.|+ |+||+++++.|...|++|++++|+.++.+.
T Consensus       150 ~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~  193 (293)
T 3d4o_A          150 DFTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLAR  193 (293)
T ss_dssp             SSCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            35789999999996 899999999999999999999999876543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.46  E-value=0.34  Score=41.90  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..++.|+|| |.+|.+++..|+..+.  ++++.+.+.++++.....+....  ...+.+. .|  +.+.           
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~-~~--~~~a-----------   69 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SG--EYSD-----------   69 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-EC--CGGG-----------
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEE-EC--CHHH-----------
Confidence            357999999 9999999999999886  89999999888876555554321  1123222 22  2222           


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVAS  184 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS  184 (287)
                      +..-|++|..+|......   ... +   +.+..    ...+.+.+.+.+.+.  ++.++++|-
T Consensus        70 ~~~aDvVii~ag~~~~~g---~~R-~---dl~~~----n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           70 CKDADLVVITAGAPQKPG---ESR-L---DLVNK----NLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             GTTCSEEEECCCC-----------------CHHH----HHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             hCCCCEEEECCCCCCCCC---CCH-H---HHHHH----HHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            246799999998743211   111 1   12233    334555555555443  367777653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.45  E-value=0.073  Score=47.66  Aligned_cols=45  Identities=20%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      .+.+.+++|.|+ |.+|..+++.+...|++|++++++..+++...+
T Consensus       187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          187 TVPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            357889999999 799999999999999999999999988765543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.45  E-value=0.17  Score=43.25  Aligned_cols=111  Identities=15%  Similarity=0.043  Sum_probs=65.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHh-c--CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAEL-M--GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~-~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|+|| |.+|.+++..|+..|.  +|++.+++++.++.....+.. .  ..........  +|.+.+           
T Consensus         2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~a~-----------   67 (294)
T 1oju_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSLL-----------   67 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGGGG-----------
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCHHHh-----------
Confidence            4789999 9999999999999998  899999999887633332221 1  1111222211  122221           


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVAS  184 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS  184 (287)
                      ..-|++|..+|......       +.-.+.+..|    ..+.+.+.+.+.+..  +.++++|.
T Consensus        68 ~~aDiVViaag~~~kpG-------~~R~dl~~~N----~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           68 KGSEIIVVTAGLARKPG-------MTRLDLAHKN----AGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             TTCSEEEECCCCCCCSS-------CCHHHHHHHH----HHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCEEEECCCCCCCCC-------CcHHHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            35699999998642211       1111123333    455566666665543  66777664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.41  E-value=0.34  Score=38.77  Aligned_cols=75  Identities=12%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCC-eeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP-FALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.+++-.|++.|.   ++..+++.+.+|+.++.+++.++.+.+..+..+-. ++.++..|+.+.-          ...+
T Consensus        55 ~~~~vLDlGcG~G~---~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~----------~~~~  121 (204)
T 3njr_A           55 RGELLWDIGGGSGS---VSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL----------ADLP  121 (204)
T ss_dssp             TTCEEEEETCTTCH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG----------TTSC
T ss_pred             CCCEEEEecCCCCH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc----------ccCC
Confidence            56789999988763   34455556899999999999988887777666544 6889999986521          1124


Q ss_pred             CccEEEEcc
Q 042560          125 RLDHLVTNA  133 (287)
Q Consensus       125 ~idvli~na  133 (287)
                      ..|+++.+.
T Consensus       122 ~~D~v~~~~  130 (204)
T 3njr_A          122 LPEAVFIGG  130 (204)
T ss_dssp             CCSEEEECS
T ss_pred             CCCEEEECC
Confidence            689888655

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.40  E-value=0.0078  Score=52.23  Aligned_cols=85  Identities=16%  Similarity=0.047  Sum_probs=55.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..++.|++++|.|++.-+|+.+|+.|.+.|++|.+++|+...+.+..+++..   ..........++++++.+.+.    
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~---~~~~~t~~~~t~~~~L~e~l~----  244 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKL---NKHHVEDLGEYSEDLLKKCSL----  244 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSC---CCCEEEEEEECCHHHHHHHHH----
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhh---hcccccccccccHhHHHHHhc----
Confidence            3478999999999988889999999999999999998874332211111110   001111111134456655554    


Q ss_pred             hcCCccEEEEccccC
Q 042560          122 HFGRLDHLVTNAGVV  136 (287)
Q Consensus       122 ~~~~idvli~nag~~  136 (287)
                         .-|++|..+|..
T Consensus       245 ---~ADIVIsAtg~p  256 (320)
T 1edz_A          245 ---DSDVVITGVPSE  256 (320)
T ss_dssp             ---HCSEEEECCCCT
T ss_pred             ---cCCEEEECCCCC
Confidence               359999999864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.40  E-value=0.1  Score=45.39  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|| |++|...+..+... |++|+.+++++++++..    +..+..    ...|.++.+..+++.+...  ..
T Consensus       163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~----~~~Ga~----~~i~~~~~~~~~~v~~~t~--g~  231 (348)
T 4eez_A          163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA----KKIGAD----VTINSGDVNPVDEIKKITG--GL  231 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH----HHTTCS----EEEEC-CCCHHHHHHHHTT--SS
T ss_pred             CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhh----hhcCCe----EEEeCCCCCHHHHhhhhcC--CC
Confidence            6889999988 77777777777655 77999999998875432    223322    2235555444333322211  12


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      .+|.++.+++.
T Consensus       232 g~d~~~~~~~~  242 (348)
T 4eez_A          232 GVQSAIVCAVA  242 (348)
T ss_dssp             CEEEEEECCSC
T ss_pred             CceEEEEeccC
Confidence            57788877763

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.36  E-value=0.025  Score=48.98  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      |+ ++|+||+|++|...+..+...|++|+++++++++.+.+
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~  187 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL  187 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            45 99999999999999988888999999999998876654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.34  E-value=0.057  Score=45.66  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ++||.++|.|+++-.|+.+|..|.+.|++|.++.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            899999999999999999999999999999998764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.33  E-value=0.035  Score=47.82  Aligned_cols=68  Identities=13%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|| |++|...+......|++|+.++ +.++.+.+. ++   +   +..+. |  |.+.       +   .++
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~-~l---G---a~~v~-~--d~~~-------v---~~g  199 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA-KR---G---VRHLY-R--EPSQ-------V---TQK  199 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH-HH---T---EEEEE-S--SGGG-------C---CSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH-Hc---C---CCEEE-c--CHHH-------h---CCC
Confidence            6899999999 9999999888888899999998 766655432 22   2   22221 3  2221       1   358


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.++|.
T Consensus       200 ~Dvv~d~~g~  209 (315)
T 3goh_A          200 YFAIFDAVNS  209 (315)
T ss_dssp             EEEEECC---
T ss_pred             ccEEEECCCc
Confidence            9999999985

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.31  E-value=0.28  Score=41.85  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +++.|.|+ |.+|.++|..|++.|++|++++|+++.++..
T Consensus        16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            56888888 8999999999999999999999998877654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.31  E-value=0.013  Score=51.13  Aligned_cols=72  Identities=17%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      .+.++|.|+ |.+|+.+++.|.++|. |++++++++..+ ..+       ....++.+|.+|++.++++      ...+.
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------~~~~~i~gd~~~~~~L~~a------~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------SGANFVHGDPTRVSDLEKA------NVRGA  178 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------TTCEEEESCTTSHHHHHHT------CSTTE
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------CCcEEEEeCCCCHHHHHhc------Chhhc
Confidence            457999997 8999999999999999 999999988876 332       1366788899888776544      11345


Q ss_pred             cEEEEccc
Q 042560          127 DHLVTNAG  134 (287)
Q Consensus       127 dvli~nag  134 (287)
                      |.++...+
T Consensus       179 ~~vi~~~~  186 (336)
T 1lnq_A          179 RAVIVDLE  186 (336)
T ss_dssp             EEEEECCS
T ss_pred             cEEEEcCC
Confidence            66666543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.27  E-value=0.45  Score=41.08  Aligned_cols=77  Identities=18%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHh-c--CCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAEL-M--GSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~-~--~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++..++.|+|| |.+|.+++..|+.+|.  ++++.+.++++++.....+.. .  .+..+... .|  +.+.        
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~-~~--~~~a--------   71 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK-AG--EYSD--------   71 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEE-EC--CGGG--------
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEE-eC--CHHH--------
Confidence            35568999999 9999999999999884  899999998777654433322 1  11123322 22  2222        


Q ss_pred             HHhcCCccEEEEccccC
Q 042560          120 MEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       120 ~~~~~~idvli~nag~~  136 (287)
                         +..-|++|..+|..
T Consensus        72 ---~~~aDvVvi~ag~~   85 (317)
T 3d0o_A           72 ---CHDADLVVICAGAA   85 (317)
T ss_dssp             ---GTTCSEEEECCCCC
T ss_pred             ---hCCCCEEEECCCCC
Confidence               24679999999874

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.21  E-value=0.034  Score=47.16  Aligned_cols=45  Identities=18%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA   91 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~   91 (287)
                      .++.++|.|+ ||.|++++..|.+.|+ +|.++.|+.++.+++.+++
T Consensus       118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~  163 (271)
T 1npy_A          118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY  163 (271)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            5688999997 8999999999999998 7999999999888877665

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.19  E-value=0.07  Score=45.64  Aligned_cols=85  Identities=12%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH-------HHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-------AELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +++.|.|. |.+|..+++.|++.|++|++.+|++++.++..+.       ....-.  ..++..-+.+...+++.++.+.
T Consensus        16 ~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--aDvvi~~vp~~~~~~~v~~~l~   92 (296)
T 3qha_A           16 LKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA--ADLIHITVLDDAQVREVVGELA   92 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT--SSEEEECCSSHHHHHHHHHHHH
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh--CCEEEEECCChHHHHHHHHHHH
Confidence            45666774 8999999999999999999999998876655431       111001  2333344555677777777776


Q ss_pred             HhcCCccEEEEcccc
Q 042560          121 EHFGRLDHLVTNAGV  135 (287)
Q Consensus       121 ~~~~~idvli~nag~  135 (287)
                      +...+=.++|+....
T Consensus        93 ~~l~~g~ivv~~st~  107 (296)
T 3qha_A           93 GHAKPGTVIAIHSTI  107 (296)
T ss_dssp             TTCCTTCEEEECSCC
T ss_pred             HhcCCCCEEEEeCCC
Confidence            654444566766654

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.17  E-value=0.015  Score=52.31  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEE-EEeC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLV-LVAR   79 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv-~~~r   79 (287)
                      .+++|++++|+| .|..|...++.|.+.|++|+ +.++
T Consensus       214 ~~l~gk~vaVqG-~GnVG~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          214 LDLRGARVVVQG-LGQVGAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCccCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            378999999999 68899999999999999999 6666

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.15  E-value=0.36  Score=41.83  Aligned_cols=77  Identities=21%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC---CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG---SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +.+++.|+|+ |.+|.+++..|+..|. ++++.++++++++.....+....   .........  .|.+.          
T Consensus         4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~~a----------   70 (321)
T 3p7m_A            4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDYKD----------   70 (321)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGG----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCHHH----------
Confidence            4567888895 9999999999999988 99999999887765555444320   011222111  12221          


Q ss_pred             hcCCccEEEEccccC
Q 042560          122 HFGRLDHLVTNAGVV  136 (287)
Q Consensus       122 ~~~~idvli~nag~~  136 (287)
                       +..-|++|..+|..
T Consensus        71 -~~~aDvVIi~ag~p   84 (321)
T 3p7m_A           71 -LENSDVVIVTAGVP   84 (321)
T ss_dssp             -GTTCSEEEECCSCC
T ss_pred             -HCCCCEEEEcCCcC
Confidence             23579999999864

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.02  E-value=0.41  Score=41.57  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=54.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      +.+..++.|+|| |.+|.+++..|+..+.  ++++.+.+.++++.....+....  ..++.+. .|  +.+.        
T Consensus         6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~~--~~~a--------   73 (326)
T 2zqz_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY-SA--EYSD--------   73 (326)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-EC--CGGG--------
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEE-EC--CHHH--------
Confidence            345578999999 9999999999999886  89999999888876665554321  1123322 22  2222        


Q ss_pred             HHhcCCccEEEEccccC
Q 042560          120 MEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       120 ~~~~~~idvli~nag~~  136 (287)
                         +..-|++|..+|..
T Consensus        74 ---~~~aDvVii~ag~~   87 (326)
T 2zqz_A           74 ---AKDADLVVITAGAP   87 (326)
T ss_dssp             ---GGGCSEEEECCCCC
T ss_pred             ---hCCCCEEEEcCCCC
Confidence               23579999999874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.99  E-value=0.042  Score=47.07  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+++||.++|.|+++-.|+.++..|.+.|++|.++.|+.
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3578999999999988899999999999999999998743

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.98  E-value=0.34  Score=41.56  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.|.|| |.+|.+++..|+..|.  +|+++++++++++.....+....  ....... .  ++.+.           ..
T Consensus         2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~-~--~~~~a-----------~~   66 (304)
T 2v6b_A            2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVW-H--GGHSE-----------LA   66 (304)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEE-E--ECGGG-----------GT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEE-E--CCHHH-----------hC
Confidence            5788998 9999999999999998  99999999887765444443211  0112221 1  12221           24


Q ss_pred             CccEEEEccccC
Q 042560          125 RLDHLVTNAGVV  136 (287)
Q Consensus       125 ~idvli~nag~~  136 (287)
                      .-|++|.++|..
T Consensus        67 ~aDvVIi~~~~~   78 (304)
T 2v6b_A           67 DAQVVILTAGAN   78 (304)
T ss_dssp             TCSEEEECC---
T ss_pred             CCCEEEEcCCCC
Confidence            679999999864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.96  E-value=0.035  Score=47.17  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ..+++||.++|.|+++-.|+.++..|.+.|++|.++.++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            357899999999999889999999999999999988664

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.95  E-value=0.11  Score=44.84  Aligned_cols=87  Identities=10%  Similarity=0.029  Sum_probs=55.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH-------HHh-cCCCeeEEEeecCCCHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-------AEL-MGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      +.+++.|.|. |.+|..+++.|++.|++|.+.+|++++.++..+.       ... ..  ...++..-+.+...++.++.
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp~~~~~~~v~~  106 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLENGAVVQDVLF  106 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCSSHHHHHHHHT
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECCCHHHHHHHHc
Confidence            4457878876 8999999999999999999999999887765431       000 01  12233334445566666665


Q ss_pred             --HHHHhcCCccEEEEcccc
Q 042560          118 --VTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       118 --~~~~~~~~idvli~nag~  135 (287)
                        .+.+...+=.++|+....
T Consensus       107 ~~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          107 AQGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             TTCHHHHCCTTCEEEECSCC
T ss_pred             chhHHhhCCCCCEEEecCCC
Confidence              444444444566665543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=94.92  E-value=0.039  Score=60.46  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=53.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--  123 (287)
                      +|.+++|.||+||+|.+.+......|++|++++++.++.+.+.+.....+...    ..|..+.+-    .+++.+..  
T Consensus      1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~----v~~~~~~~~----~~~i~~~t~g 1738 (2512)
T 2vz8_A         1667 PGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETC----FANSRDTSF----EQHVLRHTAG 1738 (2512)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTT----EEESSSSHH----HHHHHHTTTS
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceE----EecCCCHHH----HHHHHHhcCC
Confidence            68999999999999999988877889999999998877655443221112111    124344322    23333322  


Q ss_pred             CCccEEEEccc
Q 042560          124 GRLDHLVTNAG  134 (287)
Q Consensus       124 ~~idvli~nag  134 (287)
                      .++|+++++.|
T Consensus      1739 ~GvDvVld~~g 1749 (2512)
T 2vz8_A         1739 KGVDLVLNSLA 1749 (2512)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEECCC
Confidence            36999999876

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.87  E-value=0.74  Score=39.66  Aligned_cols=114  Identities=17%  Similarity=0.065  Sum_probs=63.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-C--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEee-cCCCHHHHHHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYARR-R--ARLVLVARRERQLREVADQAELMGSPFALAIPA-DVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.|+||+|.+|.+++..|+.+ +  .++++++.++ ..+....+++.... ....... .-.+.+.+           .
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~-~~~v~~~~~~~~~~~~-----------~   68 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPT-AVKIKGFSGEDATPAL-----------E   68 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCS-SEEEEEECSSCCHHHH-----------T
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCC-CceEEEecCCCcHHHh-----------C
Confidence            5789999999999999999886 5  3799999987 34433444443321 1222111 11122222           4


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVAS  184 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS  184 (287)
                      ..|++|..+|.....      . +.=.+.+..|..-.-.+.+.+...  ..++.++++|.
T Consensus        69 ~aDivii~ag~~rkp------G-~~R~dll~~N~~I~~~i~~~i~~~--~p~a~vlvvtN  119 (312)
T 3hhp_A           69 GADVVLISAGVARKP------G-MDRSDLFNVNAGIVKNLVQQVAKT--CPKACIGIITN  119 (312)
T ss_dssp             TCSEEEECCSCSCCT------T-CCHHHHHHHHHHHHHHHHHHHHHH--CTTSEEEECSS
T ss_pred             CCCEEEEeCCCCCCC------C-CCHHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEecC
Confidence            679999999964221      1 111234455554433444443332  11367777664

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.81  E-value=0.017  Score=49.10  Aligned_cols=173  Identities=17%  Similarity=0.104  Sum_probs=96.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCeEE-EEeCChhHH--H-----------------HHHHHHHhcCCCeeEEEee
Q 042560           46 AGKVVLITGASSGIGKHLAYEYAR-RRARLV-LVARRERQL--R-----------------EVADQAELMGSPFALAIPA  104 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~-~G~~vv-~~~r~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~  104 (287)
                      +.-++.|+|++|.+|+.+++.+.+ .|++++ +++++.+..  +                 +..+.+.     .+. +..
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~-----~~D-vVI   77 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD-----DFD-VFI   77 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT-----SCS-EEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc-----CCC-EEE
Confidence            344799999999999999999875 577777 556554220  0                 0001110     122 456


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCccEEEEccccCCCC--CCCCCCCCCCcccchhehh----hhHHHHHHHHHHHHhcCCCE
Q 042560          105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC--LFEDYTDITKPAPAMDINF----WGSAYGTYFAIPYLKQTKGK  178 (287)
Q Consensus       105 D~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~--~~~~~~~~~~~~~~~~~n~----~~~~~l~~~~~~~l~~~~g~  178 (287)
                      |++.++...+.+....+.  ++++++-+.|.....  ...+. . +...-.+..|.    .-.+.+++.+.+.|.+ +=.
T Consensus        78 Dft~p~~~~~~~~~a~~~--G~~vVigTtG~~~e~~~~L~~~-a-~~~~vv~a~N~siGvn~~~~l~~~aa~~~~~-~~d  152 (273)
T 1dih_A           78 DFTRPEGTLNHLAFCRQH--GKGMVIGTTGFDEAGKQAIRDA-A-ADIAIVFAANFSVGVNVMLKLLEKAAKVMGD-YTD  152 (273)
T ss_dssp             ECSCHHHHHHHHHHHHHT--TCEEEECCCCCCHHHHHHHHHH-T-TTSCEEECSCCCHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred             EcCChHHHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHh-c-CCCCEEEEecCcHHHHHHHHHHHHHHHhcCC-CCC
Confidence            899999988888877775  678888788754311  00000 0 11112233332    2233455555555542 112


Q ss_pred             EEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHh---------------CCC-eEEEEEeCCcccCC
Q 042560          179 IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---------------GGD-IGITIVTPGLIESE  232 (287)
Q Consensus       179 iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~---------------~~~-i~v~~i~PG~v~t~  232 (287)
                      +=.+=.   +....-...|+.++...+.+.+.+...+               .++ |.++++.-|-+-..
T Consensus       153 ieiiE~---Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~vvg~  219 (273)
T 1dih_A          153 IEIIEA---HHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGE  219 (273)
T ss_dssp             EEEEEE---ECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEEEECTTCCEE
T ss_pred             EEEEEe---ecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccCCCCCCcceEEEEeCCCCCcc
Confidence            222211   1222334558899988888877665432               124 89999885555443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.78  E-value=0.036  Score=47.11  Aligned_cols=39  Identities=21%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ..+++||.++|.|+++-.|+.++..|.+.|++|.++.|+
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            357899999999998889999999999999999888664

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.78  E-value=0.14  Score=42.83  Aligned_cols=89  Identities=22%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCChhHHHHHHHHHHhc-------CCCeeEEEeecCCCHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELM-------GSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      +.++.|.|+ |.+|.+++..|.+.|++ |.+++|+.++.++..+...-.       --..+..+..- ...+.+.+++++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a-v~~~~~~~v~~~   87 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS-LKDSAFAELLQG   87 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC-CCHHHHHHHHHH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe-cCHHHHHHHHHH
Confidence            346888887 89999999999999998 889999988877665542100       00012222222 234456777777


Q ss_pred             HHHhcCCccEEEEccccCC
Q 042560          119 TMEHFGRLDHLVTNAGVVP  137 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~  137 (287)
                      +.+...+=.+++++.+..+
T Consensus        88 l~~~~~~~~ivv~~s~~~~  106 (266)
T 3d1l_A           88 IVEGKREEALMVHTAGSIP  106 (266)
T ss_dssp             HHTTCCTTCEEEECCTTSC
T ss_pred             HHhhcCCCcEEEECCCCCc
Confidence            7654333346777776544

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.78  E-value=0.16  Score=44.69  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      .+++||++.|.|. |.+|+.+++.+.+.|++|++.+.+..+
T Consensus       171 ~~L~GktV~I~G~-GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          171 GSLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            3789999999975 899999999999999999988887654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=94.77  E-value=0.61  Score=36.91  Aligned_cols=101  Identities=17%  Similarity=0.061  Sum_probs=68.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.+++-.|++.|.   ++..+++.+  .+|+.++.++..++.+.+.....+-.++.++..|..+...          ..
T Consensus        40 ~~~~vLDiG~G~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~~  106 (204)
T 3e05_A           40 DDLVMWDIGAGSAS---VSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD----------DL  106 (204)
T ss_dssp             TTCEEEEETCTTCH---HHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT----------TS
T ss_pred             CCCEEEEECCCCCH---HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh----------cC
Confidence            57789999998764   445556655  7999999999998888777766554568889898754311          12


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~is  183 (287)
                      +..|+++.+....                       ....+++.+...+++ +|+++...
T Consensus       107 ~~~D~i~~~~~~~-----------------------~~~~~l~~~~~~Lkp-gG~l~~~~  142 (204)
T 3e05_A          107 PDPDRVFIGGSGG-----------------------MLEEIIDAVDRRLKS-EGVIVLNA  142 (204)
T ss_dssp             CCCSEEEESCCTT-----------------------CHHHHHHHHHHHCCT-TCEEEEEE
T ss_pred             CCCCEEEECCCCc-----------------------CHHHHHHHHHHhcCC-CeEEEEEe
Confidence            4689888765431                       122455666666654 67777653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.62  E-value=0.5  Score=40.42  Aligned_cols=99  Identities=15%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHH-cCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSG-IGKHLAYEYAR-RRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~g-iG~aia~~L~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.+++..|++.| +...+   +++ .|++|+.++.+++.++.+.+..+..+-.++.++.+|..+..            .
T Consensus       122 ~g~rVLDIGcG~G~~ta~~---lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~------------d  186 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGIL---LSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID------------G  186 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHH---HHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG------------G
T ss_pred             CcCEEEEECCCccHHHHHH---HHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC------------C
Confidence            6889999999854 33222   233 48999999999999988888776655457999999986521            2


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~is  183 (287)
                      ++.|+++.++..         .+              ...+.+.+.+.++. +|++++..
T Consensus       187 ~~FDvV~~~a~~---------~d--------------~~~~l~el~r~LkP-GG~Lvv~~  222 (298)
T 3fpf_A          187 LEFDVLMVAALA---------EP--------------KRRVFRNIHRYVDT-ETRIIYRT  222 (298)
T ss_dssp             CCCSEEEECTTC---------SC--------------HHHHHHHHHHHCCT-TCEEEEEE
T ss_pred             CCcCEEEECCCc---------cC--------------HHHHHHHHHHHcCC-CcEEEEEc
Confidence            578999875541         11              23455566666654 67887765

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.59  E-value=0.37  Score=41.21  Aligned_cols=111  Identities=14%  Similarity=0.040  Sum_probs=66.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|.|| |++|.++|..|..++.  +++++|.+++..+..+..+...   -.........  .|.+.           .
T Consensus         2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~~~-----------~   67 (294)
T 2x0j_A            2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSL-----------L   67 (294)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCGGG-----------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCHHH-----------h
Confidence            4678896 9999999999998875  7999999987766555444331   1112222222  12222           1


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcC
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVAS  184 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS  184 (287)
                      ..-|++|..||......       +.=.+.++.|.    .+.+.+.+.+.+..  +.++.+|.
T Consensus        68 ~~aDvVvitAG~prkpG-------mtR~dLl~~Na----~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           68 KGSEIIVVTAGLARKPG-------MTRLDLAHKNA----GIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             TTCSEEEECCCCCCCSS-------SCHHHHHHHHH----HHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCEEEEecCCCCCCC-------CchHHHHHHHH----HHHHHHHHHHHhcCCceEEEEecC
Confidence            35699999999754321       11122344444    45566666555443  55555554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.57  E-value=0.066  Score=45.45  Aligned_cols=42  Identities=17%  Similarity=0.221  Sum_probs=37.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +++.|.|++|.+|.++++.|.+.|++|++++|+.+..+...+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   53 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG   53 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh
Confidence            469999999999999999999999999999999887766543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.54  E-value=0.057  Score=45.94  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..+++|+.++|.|++.-.|+.+++.|.+.|++|.++.++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            4578999999999988899999999999999999986544

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.54  E-value=0.057  Score=44.84  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=33.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ....++.++++.|.| .|.+|.++++.|++.|++|++.+|++++
T Consensus        12 ~~~~~~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           12 HENLYFQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             -------CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccccccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            445567788888886 6999999999999999999999999876

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.54  E-value=0.29  Score=43.11  Aligned_cols=87  Identities=7%  Similarity=0.094  Sum_probs=53.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH-----------HHhcCCCeeEEEeecCCCHHHHH
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-----------AELMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      ++.+++.|.| .|-+|..+++.|++.|++|.+.+|+.++.++..+.           ........+.++  =+.+. .++
T Consensus        20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~--~vp~~-~v~   95 (358)
T 4e21_A           20 FQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWL--MVPAA-VVD   95 (358)
T ss_dssp             --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEE--CSCGG-GHH
T ss_pred             hcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEE--eCCHH-HHH
Confidence            4567788888 58999999999999999999999998877655321           111111122222  22223 566


Q ss_pred             HHHHHHHHhcCCccEEEEcccc
Q 042560          114 HFVDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~nag~  135 (287)
                      ++++.+.....+=+++|.+...
T Consensus        96 ~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           96 SMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             HHHHHHGGGCCTTCEEEECSSC
T ss_pred             HHHHHHHhhCCCCCEEEeCCCC
Confidence            6666665544344566665544

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.53  E-value=0.17  Score=43.76  Aligned_cols=75  Identities=24%  Similarity=0.164  Sum_probs=47.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..++.|+|+ |.+|..++..|+..|.  ++++.|.++++++.....+....  ...+... .  ++.+.           
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~~a-----------   71 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDYSD-----------   71 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGGG-----------
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCHHH-----------
Confidence            456888898 9999999999999987  89999999877665444443321  0112211 1  12111           


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                      +..-|++|..+|..
T Consensus        72 ~~~aDvVii~~g~p   85 (318)
T 1y6j_A           72 VKDCDVIVVTAGAN   85 (318)
T ss_dssp             GTTCSEEEECCCC-
T ss_pred             hCCCCEEEEcCCCC
Confidence            24679999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.52  E-value=0.12  Score=43.75  Aligned_cols=86  Identities=13%  Similarity=0.075  Sum_probs=53.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH-------HHhcCCCeeEEEeecCCCHHHHHHHH---H
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-------AELMGSPFALAIPADVSKVEDCKHFV---D  117 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~v~~~~---~  117 (287)
                      +++.|.|+ |.+|.++++.|++.|++|++.+|++++.++..+.       ....- ....++..-+.+...+++.+   +
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~~aDvvi~~vp~~~~~~~v~~~~~   79 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVV-ESCPVTFAMLADPAAAEEVCFGKH   79 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHH-HHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHH-hcCCEEEEEcCCHHHHHHHHcCcc
Confidence            45778876 8999999999999999999999998876655431       00000 01222333344456666666   5


Q ss_pred             HHHHhcCCccEEEEcccc
Q 042560          118 VTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~  135 (287)
                      .+.+...+=.++|+..+.
T Consensus        80 ~l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           80 GVLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             CHHHHCCTTCEEEECSCC
T ss_pred             hHhhcCCCCCEEEeCCCC
Confidence            555443333456666543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.52  E-value=0.2  Score=40.45  Aligned_cols=77  Identities=6%  Similarity=0.064  Sum_probs=49.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..+..+++.|.| .|.+|.+++..|++.|++|.+.+|+++          ......+.++.+-   .+.++++++++...
T Consensus        15 ~~~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~----------~~~~aD~vi~av~---~~~~~~v~~~l~~~   80 (209)
T 2raf_A           15 LYFQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQ----------ATTLGEIVIMAVP---YPALAALAKQYATQ   80 (209)
T ss_dssp             -----CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCC----------CSSCCSEEEECSC---HHHHHHHHHHTHHH
T ss_pred             cccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHH----------HhccCCEEEEcCC---cHHHHHHHHHHHHh
Confidence            345667899999 589999999999999999999999876          1112234444332   66677777776554


Q ss_pred             cCCccEEEEccc
Q 042560          123 FGRLDHLVTNAG  134 (287)
Q Consensus       123 ~~~idvli~nag  134 (287)
                      .. =.++++.+.
T Consensus        81 ~~-~~~vi~~~~   91 (209)
T 2raf_A           81 LK-GKIVVDITN   91 (209)
T ss_dssp             HT-TSEEEECCC
T ss_pred             cC-CCEEEEECC
Confidence            33 235565544

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=94.51  E-value=0.019  Score=56.22  Aligned_cols=76  Identities=13%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--  123 (287)
                      +|.+++|.||+||+|.+.+......|++|+.++++. +.+.+ .    .+...    ..|..+.+-.+    ++.+..  
T Consensus       345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l-~----lga~~----v~~~~~~~~~~----~i~~~t~g  410 (795)
T 3slk_A          345 PGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAV-E----LSREH----LASSRTCDFEQ----QFLGATGG  410 (795)
T ss_dssp             TTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGS-C----SCGGG----EECSSSSTHHH----HHHHHSCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhh-h----cChhh----eeecCChhHHH----HHHHHcCC
Confidence            689999999999999999888888899999988654 32211 1    22111    12434333222    233322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      .++|+++++.|.
T Consensus       411 ~GvDvVld~~gg  422 (795)
T 3slk_A          411 RGVDVVLNSLAG  422 (795)
T ss_dssp             SCCSEEEECCCT
T ss_pred             CCeEEEEECCCc
Confidence            369999998875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.49  E-value=0.1  Score=44.95  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=34.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA   88 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~   88 (287)
                      +++.|.|. |-+|.++++.|++.|++|.+.+|++++.++..
T Consensus        22 ~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   61 (310)
T 3doj_A           22 MEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV   61 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            46777775 89999999999999999999999988776654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.48  E-value=0.19  Score=42.88  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+++.|.||.|.+|.++++.|.+.|++|.+++|+.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            356889998999999999999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	2e-47
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	9e-47
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	7e-46
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	4e-44
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	9e-44
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	2e-43
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	2e-42
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	2e-42
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	3e-42
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	5e-42
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	2e-41
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	3e-40
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	4e-40
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	6e-40
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	1e-39
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	3e-38
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	3e-38
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	5e-38
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	8e-38
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	2e-37
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	2e-37
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	2e-37
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	5e-37
d2bd0a1	240	c.2.1.2 (A:2-241) Bacterial sepiapterin reductase	2e-36
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	2e-36
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	4e-36
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	6e-36
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	2e-35
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	4e-35
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	8e-35
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	1e-34
d1x1ta1	260	c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge	3e-34
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-34
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	4e-34
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	4e-34
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	7e-33
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	1e-32
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	2e-32
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	1e-31
d1edoa_	244	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	8e-31
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	1e-30
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	1e-30
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	3e-30
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	3e-30
d1uzma1	237	c.2.1.2 (A:9-245) beta-keto acyl carrier protein r	2e-29
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	3e-29
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	8e-29
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	1e-28
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	8e-28
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	3e-27
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	5e-27
d1uaya_	241	c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena	7e-25
d1ulua_	256	c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph	1e-24
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-24
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-24
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	5e-24
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	5e-23
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-22
d1qsga_	258	c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli	2e-21
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	5e-18
d2pd4a1	274	c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte	1e-17
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	1e-15
d1e7wa_	284	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	1e-15
d2fr1a1	259	c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI	2e-15
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	2e-12
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	7e-12
d1d7oa_	297	c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B	3e-10
d1uh5a_	329	c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite	3e-09
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	4e-06
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	3e-04
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	4e-04
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	8e-04
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	0.001
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	0.003

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (398), Expect = 2e-47
 Identities = 55/246 (22%), Positives = 94/246 (38%), Gaps = 17/246 (6%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF-ALAIPAD 105
            ++ L+TGAS GIG  +A    ++  ++V  AR    + E+A + +  G P   +    D
Sbjct: 10  DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCD 69

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +S  ED              +D  + NAG+         +         ++N    +  T
Sbjct: 70  LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKD-MFNVNVLALSICT 128

Query: 166 YFAIPYLKQTK---GKIIVVASAAGW--LPPPRMSFYNASKAAKIALYETLRVEF-GGDI 219
             A   +K+     G II + S +G   LP     FY+A+K A  AL E LR E      
Sbjct: 129 REAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQT 188

Query: 220 GITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR 277
            I    ++PG++E++             + D E        +     E+ A+A++     
Sbjct: 189 HIRATCISPGVVETQFAFKLH-------DKDPEKAAATYEQMKCLKPEDVAEAVIYVLST 241

Query: 278 GDRYLT 283
                 
Sbjct: 242 PAHIQI 247

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (392), Expect = 9e-47
 Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 24/250 (9%)

Query: 43  EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAI 102
           + V G++VLITGA  GIG+  AYE+A+ +++LVL    +  L E A + + +G+      
Sbjct: 3   KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK-VHTF 61

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
             D S  ED            G +  LV NAGVV         D  +     ++N     
Sbjct: 62  VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQD-PQIEKTFEVNVLAHF 120

Query: 163 YGTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD--- 218
           + T   +P   K   G I+ VASAAG +  P +  Y +SK A +  ++TL  E       
Sbjct: 121 WTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQIT 180

Query: 219 -IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR 277
            +  T + P  + +                    ++   SL P    EE    +++    
Sbjct: 181 GVKTTCLCPNFVNTGFI-----------------KNPSTSLGPTLEPEEVVNRLMHGILT 223

Query: 278 GDRYLTQPSW 287
             + +  PS 
Sbjct: 224 EQKMIFIPSS 233

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score =  153 bits (388), Expect = 7e-46
 Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 12/246 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            G+ VLITG +SG+G+ L   +    A++ ++ +   +L E+            L I  D
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH----GDNVLGIVGD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPA----MDINFWGS 161
           V  +ED K      +  FG++D L+ NAG+                 A      IN  G 
Sbjct: 60  VRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGY 119

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
            +     +P L  ++G +I   S AG+ P      Y A+K A + L   L  E    + +
Sbjct: 120 IHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAPYVRV 179

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACRG 278
             V  G I S++ G   L    K      + D+  S+LP+      EE   A V  A RG
Sbjct: 180 NGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRG 239

Query: 279 D-RYLT 283
           D    T
Sbjct: 240 DAAPAT 245

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score =  148 bits (375), Expect = 4e-44
 Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 15/242 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGK VL+TG + GIG+ +A  +AR  A + L   R     E  + AE +G         D
Sbjct: 4   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP----EGKEVAEAIG---GAFFQVD 56

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAY 163
           +    +   FV+      GR+D LV NA +            +  +    +++N     +
Sbjct: 57  LEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRR---VLEVNLTAPMH 113

Query: 164 GTYFAIPY-LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
            +  A     K   G I+ VAS  G       + YNASK   + L  +L ++     I +
Sbjct: 114 LSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRV 173

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
             V PG I +E                ++  D+       +P EE A+A++  A     +
Sbjct: 174 NAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKP-EEVAEAVLFLASEKASF 232

Query: 282 LT 283
           +T
Sbjct: 233 IT 234

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  147 bits (373), Expect = 9e-44
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 9/236 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIP 103
           A KV +ITG+S+GIG+  A  +AR  A++ +  R   +L E   Q    G       ++ 
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFWG 160
           ADV+        +  T+  FG+LD LV NAG                      +++N   
Sbjct: 64  ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123

Query: 161 SAYGTYFAIPYLKQTKGKI-IVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
               T  A+P+L  TKG+I  + + A+G    P   +Y+ +KAA         ++     
Sbjct: 124 VIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHG 183

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIV 272
           I +  ++PGL+ +       + +    +    +  +   +    +   ++ A+ I 
Sbjct: 184 IRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 239

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score =  146 bits (369), Expect = 2e-43
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 11/240 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             K+ +ITG ++GIG+ +A  +A   A + +         E       +G    L +  D
Sbjct: 4   KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRR-VLTVKCD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           VS+  D + F    +  FGR D LV NAG+ P+  F++ T   +     +IN        
Sbjct: 61  VSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTF-EQWKKTFEINVDSGFLMA 119

Query: 166 -YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
             F     +   G+II + S   WL     + Y ++KAA I     L  + G D I +  
Sbjct: 120 KAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNA 179

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT 283
           + P L+ +  T    L+      +   + ++  ++  +Q   +   A    A     ++T
Sbjct: 180 IAPSLVRTATTEASALS-----AMFDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFIT 234

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (363), Expect = 2e-42
 Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 22/239 (9%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIP 103
           V GKV L+TGA+ GIG+  A     + A++ LV        +      E       L I 
Sbjct: 1   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 60

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  +  +      ++HFGRLD LV NAGV     +E           + IN      
Sbjct: 61  CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKT---------LQINLVSVIS 111

Query: 164 GTYFAIPYLKQTK----GKIIVVASAAGWLPPPRMSFYNASKAAKIAL--YETLRVEFGG 217
           GTY  + Y+ +      G II ++S AG +P  +   Y ASK   +       L      
Sbjct: 112 GTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMN 171

Query: 218 D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT---EECAKAIV 272
             + +  + PG + + I     + K   +    E +D    ++           A  ++
Sbjct: 172 SGVRLNAICPGFVNTAILES--IEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLI 228

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 2e-42
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 19/245 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK V++TGAS GIG+ +AY  A+  A +V+ AR +  L++V      +G+  A  I   
Sbjct: 13  QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGT 72

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +  +   + FV    +  G LD L+ N             DI     +M++NF      T
Sbjct: 73  MEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFH-DDIHHVRKSMEVNFLSYVVLT 131

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD---IGIT 222
             A+P LKQ+ G I+VV+S AG +  P ++ Y+ASK A    + ++R E+      + IT
Sbjct: 132 VAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSIT 191

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
           +   GLI++E                       I  +   P EECA  I+         +
Sbjct: 192 LCVLGLIDTETAMKAVSG---------------IVHMQAAPKEECALEIIKGGALRQEEV 236

Query: 283 TQPSW 287
              S 
Sbjct: 237 YYDSS 241

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 3e-42
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 7/228 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AGKVV++TG   GIG  +   +    AR+V+  + E   R +  +      P A+ I  D
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V++ +D K  V  T+  FGRLD +V NAG  P     + T        +++N  G+   T
Sbjct: 60  VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 119

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
             A+PYL++++G +I ++S  G +   +   Y A+K A  A+ + L ++     + +  +
Sbjct: 120 KLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCI 179

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIV 272
           +PG I + +               +E    Q      QP  E   A V
Sbjct: 180 SPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQP-AEVGAAAV 226

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score =  143 bits (361), Expect = 5e-42
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 18/245 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV L+TG +SG+G  +        A++      E   +++A  AEL     ++ +  D
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA--AELGER--SMFVRHD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           VS   D    +       G L+ LV NAG++     E        +  + IN      G 
Sbjct: 61  VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRL-EDFSRLLKINTESVFIGC 119

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEF---GGDIGIT 222
              I  +K+T G II +AS + WLP  + + Y+ASKAA  AL     +     G  I + 
Sbjct: 120 QQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVN 179

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRG 278
            + P  I + +             V +E+      L        P E  A+ ++  A   
Sbjct: 180 SIHPDGIYTPMMQASLPK-----GVSKEMVLHDPKLNRAGRAYMP-ERIAQLVLFLASDE 233

Query: 279 DRYLT 283
              ++
Sbjct: 234 SSVMS 238

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score =  141 bits (357), Expect = 2e-41
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 20/241 (8%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+  K V+   A  GIG   + E  +R  +  ++  R      +A+   +          
Sbjct: 2   DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61

Query: 104 ADVS-KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            DV+  V + K  +    +    +D L+  AG++     E           + INF G  
Sbjct: 62  YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIER---------TIAINFTGLV 112

Query: 163 YGTYFAIPYLK----QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
             T   + +         G I  + S  G+    ++  Y+ASKAA ++   +L       
Sbjct: 113 NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT 172

Query: 219 -IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR 277
            +    + PG+  + +        N  L+V+  + ++ +   P Q +E+C +  V +   
Sbjct: 173 GVTAYSINPGITRTPLVH----TFNSWLDVEPRVAEL-LLSHPTQTSEQCGQNFVKAIEA 227

Query: 278 G 278
            
Sbjct: 228 N 228

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score =  138 bits (348), Expect = 3e-40
 Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 13/242 (5%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D++GK V+ITG + G+G   A +     AR+VL    + +    A +        A    
Sbjct: 2   DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQH 57

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV+  ED +  V    E FG +D LV NAG+     F +   + +    ++IN  G   
Sbjct: 58  LDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGM-FLETESVERFRKVVEINLTGVFI 116

Query: 164 GTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
           G    IP +K    G I+ ++SAAG +     S Y ASK     L +   VE G D I +
Sbjct: 117 GMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRV 176

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
             V PG+  + +T      + G  + +    +  +  +  +P  E A A+V        Y
Sbjct: 177 NSVHPGMTYTPMTA-----ETGIRQGEGNYPNTPMGRVGNEP-GEIAGAVVKLLSDTSSY 230

Query: 282 LT 283
           +T
Sbjct: 231 VT 232

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score =  137 bits (347), Expect = 4e-40
 Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 14/243 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV +ITG + GIG  +A ++    A++++  R      + A                D
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQ--IQFFQHD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
            S  +      D T + FG +  LV NAG+      E+ T        + +N  G  +GT
Sbjct: 63  SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRK-LLAVNLDGVFFGT 121

Query: 166 YFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG-GDIGIT 222
              I  +K       II ++S  G++  P +  YNASK A   + ++  ++    D  + 
Sbjct: 122 RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVR 181

Query: 223 I--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR 280
           +  V PG I++ +        +     +   +  +  +  +    + A   V  A    +
Sbjct: 182 VNTVHPGYIKTPLV------DDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESK 235

Query: 281 YLT 283
           + T
Sbjct: 236 FAT 238

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  138 bits (348), Expect = 6e-40
 Identities = 53/236 (22%), Positives = 94/236 (39%), Gaps = 9/236 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF--ALAIP 103
           + K V+ITG+S+GIG+  A  +A+  A + +  R   +L E        G       ++ 
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 63

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINFWG 160
           ADV+  +     ++ T++ FG++D LV NAG      F               + +N   
Sbjct: 64  ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 123

Query: 161 SAYGTYFAIPYLKQTKG-KIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
               T    P+L  +KG  + V +  AG    P   +Y  +KAA      +  ++     
Sbjct: 124 VIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFG 183

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIV 272
           I +  V+PG++E+  T    +      +    +      I +      E  A  I+
Sbjct: 184 IRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIIL 239

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score =  137 bits (345), Expect = 1e-39
 Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 7/243 (2%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           ++ G   L+TG S GIG  +  E A   A +   +R +++L +   Q    G     A  
Sbjct: 5   NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKV-EASV 63

Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            D+S   + +  ++    HF G+L+ LV NAG+V     +DYT     +  M INF  + 
Sbjct: 64  CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTV-EDYSLIMSINFEAAY 122

Query: 163 YGTYFAIPYLKQTKGK-IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +  A P+LK ++   ++ ++S +G L  P  + Y A+K A   L   L  E+  D I 
Sbjct: 123 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIR 182

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR 280
           +  V PG+I + +      +   K  +++ I   + +L  +   +E A  +         
Sbjct: 183 VNGVGPGVIATSLVEMTIQDPEQKENLNKLID--RCALRRMGEPKELAAMVAFLCFPAAS 240

Query: 281 YLT 283
           Y+T
Sbjct: 241 YVT 243

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score =  133 bits (335), Expect = 3e-38
 Identities = 59/245 (24%), Positives = 84/245 (34%), Gaps = 10/245 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIPA 104
             +VVLITG  SG+G+  A   A   A+L LV      L        E       L   A
Sbjct: 3   TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVA 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAY 163
           DVS     + +V  T E FGR+D    NAG+       E +T                  
Sbjct: 63  DVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLG 122

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
                    +Q  G ++  AS  G       S Y A+K   + L     VE+G   I I 
Sbjct: 123 LEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRIN 182

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRG 278
            + PG I + +       K    E  ++  +  I + P     +   E A  +       
Sbjct: 183 AIAPGAIWTPMVENSM--KQLDPENPRKAAEEFIQVNPSKRYGEA-PEIAAVVAFLLSDD 239

Query: 279 DRYLT 283
             Y+ 
Sbjct: 240 ASYVN 244

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  133 bits (336), Expect = 3e-38
 Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 7/234 (2%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP--FALAIP 103
           +GK V+ITG+S+GIG+  A  +A+  A++ +  R E +L E   Q    G P     A+ 
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 62

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSA 162
           ADV++       ++ T+  FG++D LV NAG             +        +NF    
Sbjct: 63  ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 122

Query: 163 YGTYFAIPYLKQTKGKI-IVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
             T     +L +TKG+I  V +  AG        +Y  +KAA         ++     + 
Sbjct: 123 EMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVR 182

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV--QISLLPVQPTEECAKAIV 272
           +  V+PG + +   G   L +    ++   I      I +      EE A  IV
Sbjct: 183 VNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIV 236

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  132 bits (333), Expect = 5e-38
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 15/246 (6%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           D+ G+V L+TG S G+G  +A   A     +V+ +R   +  E A +         +A  
Sbjct: 2   DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT-DITKPAPAMDINFWGSA 162
            DVS  E+ K  ++   E FG+LD +V  AG+      E++  D  +    +++      
Sbjct: 62  CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 121

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
               F++         I + +     +  P +S Y ASK    +L + L  E+G   I +
Sbjct: 122 CREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRV 181

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACR 277
            ++ PG   +++T   F         D E  D  +  +P+     P E+     V  A  
Sbjct: 182 NVIAPGWYRTKMTEAVFS--------DPEKLDYMLKRIPLGRTGVP-EDLKGVAVFLASE 232

Query: 278 GDRYLT 283
             +Y+T
Sbjct: 233 EAKYVT 238

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score =  132 bits (332), Expect = 8e-38
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 10/246 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPA 104
           AGKV L TGA  GIG+ +A E  RR A +V+      +   EV  + + +G+   +AI A
Sbjct: 5   AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQ-GVAIQA 63

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           D+SK  +     D  + HFG LD +++N+G+   C   + T         ++N  G  + 
Sbjct: 64  DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDK-VFNLNTRGQFFV 122

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
               + + ++    I+  + AA     P  + Y  SKAA         V+ G   + +  
Sbjct: 123 AQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNC 182

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQP------TEECAKAIVNSACR 277
           + PG +++++      +             +   L  + P        +  +A+      
Sbjct: 183 IAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQE 242

Query: 278 GDRYLT 283
              ++ 
Sbjct: 243 ESEWIN 248

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score =  130 bits (328), Expect = 2e-37
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 25/244 (10%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             K VLITGA+ GIG+     +A+  ARLV     E  LRE A+         A  +  D
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG------AHPVVMD 57

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+     +      + H GRLD +V  AG+           +      + +N  GS    
Sbjct: 58  VADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWK-MPLEDWELVLRVNLTGSFLVA 116

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI-- 223
             A   +++     IV+ ++  +L     + Y AS A  + L  TL +E G   GI +  
Sbjct: 117 KAASEAMREKNPGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLALELGRW-GIRVNT 175

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGD 279
           + PG IE+ +T           +V +++R+  I+  P+    +P  E A A +       
Sbjct: 176 LAPGFIETRMTA----------KVPEKVREKAIAATPLGRAGKP-LEVAYAALFLLSDES 224

Query: 280 RYLT 283
            ++T
Sbjct: 225 SFIT 228

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 2e-37
 Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 26/247 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           + +G   L+TGA  GIG+          A++V V R    L  +A +      P    + 
Sbjct: 2   NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVC 56

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            D+   +  +  +       G +D LV NA +V M  F + T       +  +N      
Sbjct: 57  VDLGDWDATEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDR-SFSVNLRSVFQ 111

Query: 164 GTYFAIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
            +         +   G I+ V+S    +  P +  Y+++K A   L + + +E G   I 
Sbjct: 112 VSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIR 171

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSAC 276
           +  V P ++ +++          K+  D E         P+    +  E+   +I+    
Sbjct: 172 VNSVNPTVVLTDMG--------KKVSADPEFARKLKERHPLRKFAEV-EDVVNSILFLLS 222

Query: 277 RGDRYLT 283
                 +
Sbjct: 223 DRSASTS 229

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score =  130 bits (329), Expect = 2e-37
 Identities = 56/254 (22%), Positives = 93/254 (36%), Gaps = 26/254 (10%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
               K +++TG + GIG       A   A + ++ R      EV ++          A  
Sbjct: 6   SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 65

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DVS  +     +       G +  L+ NAGV  +    + T     A   D+N +G   
Sbjct: 66  CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTH-EDFAFVYDVNVFGVFN 124

Query: 164 GTYFAIPYLKQTKGKIIVV---------ASAAGWLPPPRMSFYNASKAAKIALYETLRVE 214
                     Q + K  +V          + +         FYN+SKAA   L + L  E
Sbjct: 125 TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAE 184

Query: 215 FGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAK 269
           +    I +  ++PG + ++ T            +D++IRD Q S +P+    QP EE   
Sbjct: 185 WASAGIRVNALSPGYVNTDQTA----------HMDKKIRDHQASNIPLNRFAQP-EEMTG 233

Query: 270 AIVNSACRGDRYLT 283
             +        Y+T
Sbjct: 234 QAILLLSDHATYMT 247

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  131 bits (330), Expect = 5e-37
 Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL-----MGSPF 98
              G+VVL+TGA  G+G+  A  +A R A +V+              +            
Sbjct: 4   RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR 63

Query: 99  ALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF 158
                A+   VE  +  V   ++ FGR+D +V NAG++    F   +D         ++ 
Sbjct: 64  GGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISD-EDWDIIQRVHL 122

Query: 159 WGSAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG 217
            GS   T  A  ++ KQ  G+II+ ASA+G       + Y+A+K   + L  TL +E   
Sbjct: 123 RGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLLGLANTLVIEGRK 182

Query: 218 D-IGITIVTPGLIESEITGG 236
           + I    + P          
Sbjct: 183 NNIHCNTIAPNAGSRMTETV 202

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

 Score =  128 bits (322), Expect = 2e-36
 Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 27/245 (11%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRAR-------LVLVARRERQLREVADQAELMGSPFAL 100
            ++LITGA  GIG+ +A E+AR           LVL +R    L +++ +    G+    
Sbjct: 2   HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGAL-TD 60

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
            I AD+S + D +      +E +G +D LV NAGV       D T+       M+ N  G
Sbjct: 61  TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTE-EDFDYTMNTNLKG 119

Query: 161 SAYGTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
           + + T      + +Q  G I  + S A        S Y  SK  +  L ET+R+      
Sbjct: 120 TFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCN 179

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG 278
           + IT V PG + + + G          +VD E++      L + P E+ A  +V +  + 
Sbjct: 180 VRITDVQPGAVYTPMWG----------KVDDEMQA-----LMMMP-EDIAAPVVQAYLQP 223

Query: 279 DRYLT 283
            R + 
Sbjct: 224 SRTVV 228

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  128 bits (323), Expect = 2e-36
 Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 19/247 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            +  K VL+TG + GIG  +  E+A   A +   AR E +L E   + +  G        
Sbjct: 5   SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ-VTGSV 63

Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            D S   + +  +      F G+LD L+ N G +      DYT        +  N   + 
Sbjct: 64  CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSF-HISTNLESAY 122

Query: 163 YGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +  A P LK +    I+  S  AG +     S Y+A+K A   L   L  E+  D I 
Sbjct: 123 HLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIR 182

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSAC 276
              V P +I + +    +         D E + V IS  P+    +P EE +  +     
Sbjct: 183 ANAVAPAVIATPLAEAVY---------DDEFKKVVISRKPLGRFGEP-EEVSSLVAFLCM 232

Query: 277 RGDRYLT 283
               Y+T
Sbjct: 233 PAASYIT 239

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score =  127 bits (321), Expect = 4e-36
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 8/242 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             KV +ITG + GIG+  A  + R  A++V+    +   ++V +   +        +  D
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN--NIGSPDVISFVHCD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDY-TDITKPAPAMDINFWGSAYG 164
           V+K ED ++ VD T+   G+LD +  N GV+    +             MDIN +G+   
Sbjct: 63  VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 122

Query: 165 TYFAIPY-LKQTKGKIIVVASAAGWLPP-PRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
              A    +   KG I+  AS + +         Y A+K A + L  +L  E G   I +
Sbjct: 123 AKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRV 182

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
             V+P ++ S +    F   + ++E  +           +   E+ A A+   A    +Y
Sbjct: 183 NCVSPYIVASPLLTDVFGVDSSRVE--ELAHQAANLKGTLLRAEDVADAVAYLAGDESKY 240

Query: 282 LT 283
           ++
Sbjct: 241 VS 242

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 6e-36
 Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           AG+ VL+TGA  GIG+          AR+V V+R +  L  +  +      P    +  D
Sbjct: 6   AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +   E  +  +       G +D LV NA V  +  F + T       + ++N       +
Sbjct: 61  LGDWEATERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDR-SFEVNLRAVIQVS 115

Query: 166 YFAIP-YLKQTKGKIIVVAS-AAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
                  + +     IV  S           S Y ++K A   L + + +E G   I + 
Sbjct: 116 QIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVN 175

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
            V P ++ + +    + + +    +       +I L      E    AI+          
Sbjct: 176 AVNPTVVMTSMGQATWSDPHKAKTMLN-----RIPLGKFAEVEHVVNAILFLLSDRSGMT 230

Query: 283 T 283
           T
Sbjct: 231 T 231

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score =  126 bits (316), Expect = 2e-35
 Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 6/243 (2%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            + G   L+TG S GIG  +  E A   AR+   +R E++L E  +     G        
Sbjct: 3   SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNV-EGSV 61

Query: 104 ADVSKVEDCKHFVDVTMEHF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
            D+    +    +      F G+L+ LV NAGVV     +D+T+       M  NF  + 
Sbjct: 62  CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTE-KDYNIIMGTNFEAAY 120

Query: 163 YGT-YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
           + +            G +I ++S AG+   P +S Y+ASK A   + ++L  E+  D I 
Sbjct: 121 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIR 180

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR 280
           +  V PG+I + +          + E        +  +      +E +  I         
Sbjct: 181 VNSVAPGVILTPLVETAIKKNPHQKEEIDNFIV-KTPMGRAGKPQEVSALIAFLCFPAAS 239

Query: 281 YLT 283
           Y+T
Sbjct: 240 YIT 242

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 4e-35
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 17/247 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPF----ALA 101
            G+V ++TG ++GIGK +  E     + +V+ +R+  +L+  AD+ +    P      + 
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 70

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
           I  ++   E+  + V  T++ FG+++ LV N G   +   E  +     A  ++ N  G+
Sbjct: 71  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAV-LETNLTGT 129

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
            Y          +  G  IV          P      A++A    L ++L +E+    I 
Sbjct: 130 FYMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIR 189

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSAC 276
           I  V PG+I S+     + +        Q   +     +P      P EE +  +     
Sbjct: 190 INCVAPGVIYSQTAVENYGSW------GQSFFEGSFQKIPAKRIGVP-EEVSSVVCFLLS 242

Query: 277 RGDRYLT 283
               ++T
Sbjct: 243 PAASFIT 249

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  124 bits (312), Expect = 8e-35
 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 17/242 (7%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            KV L+TGA  GIG+ +A   A+  + ++ ++R ++    V D+ +  G   +     DV
Sbjct: 10  NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE-SSGYAGDV 68

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           SK E+    ++  +     +D LV NAG+    LF    +                    
Sbjct: 69  SKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQP 128

Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVT 225
            +   +    G+II ++S  G       + Y++SKA  I   ++L  E     I +  + 
Sbjct: 129 ISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIA 188

Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGDRY 281
           PG I S++T           ++ ++I+   IS +P      P EE A      +     Y
Sbjct: 189 PGFISSDMTD----------KISEQIKKNIISNIPAGRMGTP-EEVANLACFLSSDKSGY 237

Query: 282 LT 283
           + 
Sbjct: 238 IN 239

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score =  124 bits (311), Expect = 1e-34
 Identities = 54/250 (21%), Positives = 84/250 (33%), Gaps = 14/250 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV L+TGA   IG   A   A     + L+      L +        G   A +   D
Sbjct: 4   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE-ARSYVCD 62

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITK-PAPAMDINFWGSAYG 164
           V+  E     VD  +  FG++D L  NAG                               
Sbjct: 63  VTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVL 122

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
              +   + Q  G+I+  AS AG   PP M+ Y  SK A IAL ET  ++     I +  
Sbjct: 123 KAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNA 182

Query: 224 VTPGLIESEITGGKFLNKNGKL------EVDQEIRDVQISLLPV----QPTEECAKAIVN 273
           ++PG +       + +    K+         + +    I  +P+        E    +  
Sbjct: 183 ISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDI-NEIPGVVAF 241

Query: 274 SACRGDRYLT 283
                  ++T
Sbjct: 242 LLGDDSSFMT 251

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

 Score =  122 bits (308), Expect = 3e-34
 Identities = 62/245 (25%), Positives = 99/245 (40%), Gaps = 9/245 (3%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE-RQLREVADQAELMGSPFALAIPAD 105
           GKV ++TG++SGIG  +A   A + A +VL    +  ++ +V            L   AD
Sbjct: 4   GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGAD 63

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           +SK E  +  VD  +   GR+D LV NAG+    L ED+      A              
Sbjct: 64  LSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTA 123

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
                  KQ  G+II +ASA G +     S Y A+K   +   +   +E  G  I    +
Sbjct: 124 AALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAI 183

Query: 225 TPGLIESEITGGKF--LNKNGKLEVDQEIRDVQISLLP----VQPTEECAKAIVNSACRG 278
            PG + + +   +   L +   ++ +   R++     P    V P E+     V  A   
Sbjct: 184 CPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTP-EQLGGTAVFLASDA 242

Query: 279 DRYLT 283
              +T
Sbjct: 243 AAQIT 247

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (307), Expect = 3e-34
 Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 14/242 (5%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           +  GK+ L+TGAS GIG+ +A   A R A+++  A  E   + ++D            + 
Sbjct: 1   NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----ANGKGLM 56

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            +V+     +  ++     FG +D LV NAG+             +    ++ N      
Sbjct: 57  LNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDN-LLMRMKDEEWNDIIETNLSSVFR 115

Query: 164 GTYFAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGI 221
            +   +  + K+  G+II + S  G +     + Y A+KA  I   ++L  E     I +
Sbjct: 116 LSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITV 175

Query: 222 TIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY 281
            +V PG IE+++T     ++   +         Q+    +   +E A A+   A     Y
Sbjct: 176 NVVAPGFIETDMTRALSDDQRAGIL-------AQVPAGRLGGAQEIANAVAFLASDEAAY 228

Query: 282 LT 283
           +T
Sbjct: 229 IT 230

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score =  122 bits (308), Expect = 4e-34
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 10/246 (4%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPA 104
            GKV L+TGA  GIG+ +A E  RR  ++++          EV    +  GS  A  + A
Sbjct: 17  EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSD-AACVKA 75

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           +V  VED     +  ++ FG+LD + +N+GVV     +D T          IN  G  + 
Sbjct: 76  NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDR-VFTINTRGQFFV 134

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
              A  +L+     I++ +        P+ + Y+ SK A       + ++     I + +
Sbjct: 135 AREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNV 194

Query: 224 VTPGLIESEITGG---KFLNKNGKLEVDQEIRDVQISLLPVQP---TEECAKAIVNSACR 277
           V PG I++++      +++     L  ++      +   P++      + A+ +   A  
Sbjct: 195 VAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASN 254

Query: 278 GDRYLT 283
              ++T
Sbjct: 255 DGGWVT 260

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score =  122 bits (307), Expect = 4e-34
 Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 10/245 (4%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            +V L+TGA+SGIG  +A    +   R+ + AR E  LR    +    G   A     DV
Sbjct: 2   SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE-ADGRTCDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYT--DITKPAPAMDINFWGSAYG 164
             V + +  V   +E +G +D LV NAG        +                 +     
Sbjct: 61  RSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQ 120

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
              A   L++  G+I+ +AS  G       + Y+ASK   +   + L +E     I +  
Sbjct: 121 VLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNA 180

Query: 224 VTPGLIESEITGGKFLNKNGKLEVD-QEIRDVQISLLPV----QPTEECAKAIVNSACRG 278
           V PG +E+ +      + +   EV  +E  D   + +P+    QP  E A+ +      G
Sbjct: 181 VCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQP-SEVAEMVAYLIGPG 239

Query: 279 DRYLT 283
              +T
Sbjct: 240 AAAVT 244

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  119 bits (298), Expect = 7e-33
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 17/239 (7%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV L++G + G+G           A++V     + + + +A  AEL  +  A  +  D
Sbjct: 5   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA--AELADA--ARYVHLD 60

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V++    K  VD  +  FG L  LV NAG++ +   EDY                     
Sbjct: 61  VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIR 120

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
               P  +  +G II ++S  G         Y A+K A   L ++  +E G   I +  +
Sbjct: 121 AVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSI 180

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT 283
            PGL+++ +T            V ++I   Q +L       E +  +V  A     Y T
Sbjct: 181 HPGLVKTPMTDW----------VPEDIF--QTALGRAAEPVEVSNLVVYLASDESSYST 227

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  118 bits (296), Expect = 1e-32
 Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 33/233 (14%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIP 103
           +   V++TGA+ GIG  L  +  + +    ++  AR   +  E+    +         +P
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD----SRVHVLP 57

Query: 104 ADVSKVEDCKHFVDVTMEHFGR--LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGS 161
             V+  +    FV    E  G   L  L+ NAGV+         +    A  +D+N    
Sbjct: 58  LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117

Query: 162 AYGTYFAIPYLKQTKGKIIV-------------------VASAAGWLPPPRMSFYNASKA 202
              T   +P LK    K                      +           +  Y  SKA
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177

Query: 203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV 254
           A      TL V+   D + +    PG +++ + G     KN  L V+Q   ++
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG-----KNAALTVEQSTAEL 225

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score =  118 bits (296), Expect = 2e-32
 Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 19/248 (7%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAI 102
           D+ GKVV+ITG+S+G+GK +A  +A  +A++V+  R  E +   V ++ + +G   A+A+
Sbjct: 4   DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE-AIAV 62

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
             DV+   D  + V   ++ FG+LD ++ NAG+       + +        +D N  G+ 
Sbjct: 63  KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNK-VIDTNLTGAF 121

Query: 163 YGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
            G+  AI Y  +    G +I ++S    +P P    Y ASK     + ETL +E+    I
Sbjct: 122 LGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 181

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSA 275
            +  + PG I + I   KF         D E R    S++P+    +P EE A      A
Sbjct: 182 RVNNIGPGAINTPINAEKFA--------DPEQRADVESMIPMGYIGEP-EEIAAVAAWLA 232

Query: 276 CRGDRYLT 283
                Y+T
Sbjct: 233 SSEASYVT 240

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-31
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 23/258 (8%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-----PFAL 100
           A  VVLITG SSGIG HLA   A   ++   V    R L+      E   +         
Sbjct: 1   ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60

Query: 101 AIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWG 160
            +  DV   +      +   E       ++     + +    +       A  +D+N  G
Sbjct: 61  TLQLDVRDSKSVAAARERVTEGR---VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVG 117

Query: 161 SAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD- 218
           +       +P +K+   G+++V  S  G +  P    Y ASK A   L E+L V      
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177

Query: 219 IGITIVTPGLIESEITGGKFLNKNGKLE----------VDQEIRDVQISLLPVQPTEECA 268
           + ++++  G + +        +    L+                  Q+     Q  EE A
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA 237

Query: 269 KAIVNSACRGD---RYLT 283
           +  + +        RY T
Sbjct: 238 EVFLTALRAPKPTLRYFT 255

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score =  113 bits (284), Expect = 8e-31
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 20/232 (8%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVL-VARRERQLREVADQAELMGSPFALAIPADV 106
            VV++TGAS GIGK +A    +   ++++  AR  +   EV+ Q E  G   A+    DV
Sbjct: 2   PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQ-AITFGGDV 60

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
           SK  D +  +   ++ +G +D +V NAG+    L       ++    +D+N  G    T 
Sbjct: 61  SKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRM-KKSQWDEVIDLNLTGVFLCTQ 119

Query: 167 FAIPYL-KQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
            A   + K+ KG+II +AS  G +     + Y A+KA  I   +T   E     I + +V
Sbjct: 120 AATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVV 179

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIV 272
            PG I S++T           ++ +++    +  +P+    QP E  A  + 
Sbjct: 180 CPGFIASDMTA----------KLGEDMEKKILGTIPLGRTGQP-ENVAGLVE 220

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score =  113 bits (283), Expect = 1e-30
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 11/244 (4%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           KV L+TGA  GIGK +A    +    + +    +   + VA +    G   A+A+  DVS
Sbjct: 2   KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH-AVAVKVDVS 60

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
             +     V+   +  G  D +V NAGV P    E  T         +IN  G  +G   
Sbjct: 61  DRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVD-KVYNINVKGVIWGIQA 119

Query: 168 AIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
           A+     +   GKII   S AG +  P ++ Y++SK A   L +T   +     I +   
Sbjct: 120 AVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGY 179

Query: 225 TPGLIESEITGGKFLN-KNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGD 279
            PG++++ +             +            + +    +P E+ A  +   A    
Sbjct: 180 CPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEP-EDVAACVSYLASPDS 238

Query: 280 RYLT 283
            Y+T
Sbjct: 239 DYMT 242

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (283), Expect = 1e-30
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 17/243 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  +ITGA +GIGK +A  +A   A +V+          V D+ + +G   A A   D
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ-AFACRCD 68

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           ++  ++     D  +   G++D LV NAG      F+      + A  +++  +      
Sbjct: 69  ITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSF-FHLSQ 127

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
             A    K   G I+ + S A       M+ Y +SKAA   L   +  + G   I +  +
Sbjct: 128 LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGI 187

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGDR 280
            PG I ++                 EI    +   P+    QP ++ A A +        
Sbjct: 188 APGAILTDALKSVI---------TPEIEQKMLQHTPIRRLGQP-QDIANAALFLCSPAAS 237

Query: 281 YLT 283
           +++
Sbjct: 238 WVS 240

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           +GK +L+TGA+SGIG+     +AR  A LV V R ER L E     E      A+A+ AD
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----AEAIAVVAD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           VS  +  +      +E FGRL  +   AGV    L      +      + +N  GS    
Sbjct: 60  VSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSW-NLPLEAWEKVLRVNLTGSFLVA 118

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
             A   L++    ++    +   L    ++ Y A K   + L  TL +E     + + ++
Sbjct: 119 RKAGEVLEEGGSLVLT--GSVAGLGAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVL 176

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGDR 280
            PGLI++ +T G          +     + ++   P+    +P EE A+A +        
Sbjct: 177 LPGLIQTPMTAG----------LPPWAWEQEVGASPLGRAGRP-EEVAQAALFLLSEESA 225

Query: 281 YLT 283
           Y+T
Sbjct: 226 YIT 228

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (280), Expect = 3e-30
 Identities = 42/255 (16%), Positives = 93/255 (36%), Gaps = 17/255 (6%)

Query: 42  AEDVAGKVVLITGASSGIGKHLAYEYARRR---ARLVLVARRERQLREVADQ-AELMGSP 97
           A+ +   V ++TGAS G G+ LA + AR     + +++ AR E  LR++ ++        
Sbjct: 1   ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60

Query: 98  FALAIPADVSKVEDCKHFVDVTME----HFGRLDHLVTNAGVVPMCLFEDYTDITKPA-- 151
             +   AD+      +  +    E       +   L+ NA  +                 
Sbjct: 61  KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120

Query: 152 PAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWLPPPRMSFYNASKAAKIALY 208
               +N       T   +   + +      ++ ++S     P      Y A KAA+  LY
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180

Query: 209 ETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECA 268
           + L  E    + +    PG +++++        +   E+  +++ ++     V      A
Sbjct: 181 QVLAAEEPS-VRVLSYAPGPLDNDMQ-QLARETSKDPELRSKLQKLKSDGALVDC-GTSA 237

Query: 269 KAIVNSACRGDRYLT 283
           + ++    + D + +
Sbjct: 238 QKLL-GLLQKDTFQS 251

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 28/243 (11%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
             + VL+TG + GIG  +A   A    ++ +  R     + +              +  D
Sbjct: 6   VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL------------FGVEVD 53

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+  +          EH G ++ LV+NAG+         T+                   
Sbjct: 54  VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQ 113

Query: 166 YFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIV 224
             +    +   G++I + S +G       + Y ASKA  I +  ++  E     +   +V
Sbjct: 114 RASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVV 173

Query: 225 TPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGDR 280
            PG I++++T            +D+ I+   +  +P      P  E A  +   A     
Sbjct: 174 APGYIDTDMTRA----------LDERIQQGALQFIPAKRVGTP-AEVAGVVSFLASEDAS 222

Query: 281 YLT 283
           Y++
Sbjct: 223 YIS 225

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-29
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 14/244 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV  ITG  +G+GK +    +   A+ V+ +R+   L+  A+Q          AI  D
Sbjct: 24  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 83

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V   +  ++ V   ++  G  + ++ NA    +   E  +          +    +    
Sbjct: 84  VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTL 143

Query: 166 YFAIPYLK-QTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITI 223
                 +K Q     + + +         +    ++KA   A+ ++L  E+G   +   +
Sbjct: 144 EIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNV 203

Query: 224 VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----QPTEECAKAIVNSACRGD 279
           + PG I+++           +L+         I  +P        EE A           
Sbjct: 204 IQPGPIKTK-------GAFSRLDPTGTFEKEMIGRIPCGRLGTV-EELANLAAFLCSDYA 255

Query: 280 RYLT 283
            ++ 
Sbjct: 256 SWIN 259

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  108 bits (270), Expect = 8e-29
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 14/239 (5%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
            ++T      G   A   +     +       +Q  E+   AE                 
Sbjct: 3   AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-------YPQLKPMSE 55

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT-YFA 168
           ++    ++     +G++D LV+N    P     D   +     A++             A
Sbjct: 56  QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVA 115

Query: 169 IPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPG 227
               K+  G II + SA  + P   +S Y +++A    L   L  E G   I +  + P 
Sbjct: 116 SQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPN 175

Query: 228 LIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACRGDRYLT 283
            + SE +   +  +  K   + E       +  +Q     +E  + +   A     YLT
Sbjct: 176 YLHSEDSPYFYPTEPWKT--NPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLT 232

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-28
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 5/176 (2%)

Query: 46  AGK-VVLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQAELMGSPFALAIP 103
           +G  V L+TG + GIG  +  +  R     +VL AR   + +    Q +  G        
Sbjct: 1   SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-LSPRFHQ 59

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            D+  ++  +   D   + +G LD LV NAG+           I      M  NF+G+  
Sbjct: 60  LDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEV-TMKTNFFGTRD 118

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDI 219
                +P +K  +G+++ V+S          S     K     + E   V      
Sbjct: 119 VCTELLPLIKP-QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKF 173

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 8e-28
 Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 15/241 (6%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GKV+++T A+ GIG+  A  +AR  A+++     E +L+E+              I   
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK---------YPGIQTR 55

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V  V   K           RLD L   AG V      D  +      +M++N        
Sbjct: 56  VLDVTKKKQIDQ-FANEVERLDVLFNVAGFVHHGTVLDCEE-KDWDFSMNLNVRSMYLMI 113

Query: 166 YFAIPY-LKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKIALYETLRVEFGGD-IGIT 222
              +P  L Q  G II ++S A  +        Y+ +KAA I L +++  +F    I   
Sbjct: 114 KAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCN 173

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYL 282
            V PG +++     +   +    E   +    Q +       EE A   V  A     Y+
Sbjct: 174 CVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATA-EEIAMLCVYLASDESAYV 232

Query: 283 T 283
           T
Sbjct: 233 T 233

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score =  104 bits (260), Expect = 3e-27
 Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 14/246 (5%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
            GK  LITG++ GIG+  A  Y R  AR+ +        R  A +      P A AI  D
Sbjct: 4   DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI----GPAACAIALD 59

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGT 165
           V+        V   ++ +G +D LV NA +  +    + T  +       IN  G+ +  
Sbjct: 60  VTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDR-LFAINVSGTLFMM 118

Query: 166 YFAIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGIT 222
                        GKII +AS AG      +  Y A+KAA I+L ++  +      I + 
Sbjct: 119 QAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVN 178

Query: 223 IVTPGLIESEITGGKFLNKNGKLEVDQ-EIRDVQISLLPV----QPTEECAKAIVNSACR 277
            + PG+++ E   G          + + E +    + +P     +  E+     +  A  
Sbjct: 179 AIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRA-EDLTGMAIFLATP 237

Query: 278 GDRYLT 283
              Y+ 
Sbjct: 238 EADYIV 243

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 23/238 (9%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            K VL+  AS GIG+ +A   ++  A + + AR E  L+    +           +  D+
Sbjct: 4   DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHR----------YVVCDL 53

Query: 107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTY 166
            K       +D+  E    +D LV NAG      F++ T+         +          
Sbjct: 54  RKD------LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRN 107

Query: 167 FAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVT 225
           +     ++  G+I+ + S +   P   +   N+++ A     +TL  E     I +  V 
Sbjct: 108 YLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVA 167

Query: 226 PGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRYLT 283
           PG  E+E        K    E  ++  + QI +  +   EE A  +         YLT
Sbjct: 168 PGWTETERV------KELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLT 219

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 97.6 bits (242), Expect = 7e-25
 Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 37/249 (14%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           +  L+TG +SG+G+  A     R  R+V++  R                   + +  DV+
Sbjct: 2   RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGED-------------LIYVEGDVT 48

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP--AMDINFWGSAYGT 165
           + ED +  V    E       +      +   +          +    +++N  G+    
Sbjct: 49  REEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVL 108

Query: 166 YFAIPY-------LKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
             A           +  +G I+  AS A +      + Y ASK   +AL      E  G 
Sbjct: 109 RLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELAGW 168

Query: 219 IGITI--VTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP--VQPTEECAKAIVNS 274
            GI +  V PGL ++ +  G         E  +     Q+   P   +P EE A  +++ 
Sbjct: 169 -GIRVVTVAPGLFDTPLLQGLP-------EKAKASLAAQVPFPPRLGRP-EEYAALVLHI 219

Query: 275 ACRGDRYLT 283
               +  L 
Sbjct: 220 L--ENPMLN 226

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 97.6 bits (242), Expect = 1e-24
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 8/180 (4%)

Query: 44  DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALA 101
           D++GK  L+ G ++   +G  +A +     A + L  + ER   E    AE +G      
Sbjct: 5   DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALL-- 62

Query: 102 IPADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAP---AMDINF 158
             ADV++ E+         E FG LD+LV      P    E     T+      A++++ 
Sbjct: 63  FRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSA 122

Query: 159 WGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
           +        A P L++  G I+ +   A     P+ +    +KAA  A    L  E G  
Sbjct: 123 YSLVAVARRAEPLLRE-GGGIVTLTYYASEKVVPKYNVMAIAKAALEASVRYLAYELGPK 181

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.8 bits (240), Expect = 1e-24
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 17/191 (8%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV 106
            + VL+ G    +G      +  R   +  +   E +               ++ +    
Sbjct: 2   ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASA-----------SVIVKMTD 50

Query: 107 SKVEDCKHFVDVTMEHFG--RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
           S  E          +  G  ++D ++  AG       +  +           + W S   
Sbjct: 51  SFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTIS 110

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG---DIGI 221
           ++ A  +  +  G + +  + A     P M  Y  +K A   L ++L  +  G       
Sbjct: 111 SHLATKH-LKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAA 169

Query: 222 TIVTPGLIESE 232
             V P  +++ 
Sbjct: 170 IAVLPVTLDTP 180

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 96.5 bits (239), Expect = 1e-24
 Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 18/194 (9%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           +GKV ++ G    +G  +   + +    ++ +        +             + +  +
Sbjct: 2   SGKV-IVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADS-----------NILVDGN 49

Query: 106 VSKVEDCKHFVDVTME--HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            +  E  +  ++ T       ++D +   AG            +      +  + W SA 
Sbjct: 50  KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 109

Query: 164 GTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGG---DIG 220
               A  +  +  G + +  +AA   P P M  Y  +KAA   L  +L  +  G   +  
Sbjct: 110 AAKLATTH-LKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSA 168

Query: 221 ITIVTPGLIESEIT 234
           +  + P  +++ + 
Sbjct: 169 VLTIMPVTLDTPMN 182

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (237), Expect = 5e-24
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 27/253 (10%)

Query: 45  VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ-AELMGSPFALAIP 103
           V G V +ITG +SG+G   A     + A  VL+          A +         A    
Sbjct: 3   VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
               +                     +  A             +      +D+N  G+  
Sbjct: 63  EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122

Query: 164 GTYFAIPYLKQT-------KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFG 216
                   + Q        +G II  AS A +      + Y+ASK   + +   +  +  
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLA 182

Query: 217 GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-----QPTEECAKA 270
              I +  + PGL  + +             + +++ +   S +P       P  E A  
Sbjct: 183 PIGIRVMTIAPGLFGTPLLTS----------LPEKVCNFLASQVPFPSRLGDP-AEYAHL 231

Query: 271 IVNSACRGDRYLT 283
           +       + +L 
Sbjct: 232 VQAII--ENPFLN 242

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 92.9 bits (229), Expect = 5e-23
 Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 24/226 (10%)

Query: 48  KVVLITGASSGIGKHLA---YEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPA 104
             +LITG + G+G  L        +    L    R   Q +E+ D A+   +   L I  
Sbjct: 3   NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDL 62

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
                 D        +     L+ L  NAG+ P           +    +  N       
Sbjct: 63  RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122

Query: 165 TYFAIPYLKQTKGKIIV---------------VASAAGWLPPPRMSFYNASKAAKIALYE 209
               +P LK+                      +  +        M  Y  SK+A  A  +
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATK 182

Query: 210 TLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV 254
           +L V+     I    + PG +++++ G      +  L+V      +
Sbjct: 183 SLSVDLYPQRIMCVSLHPGWVKTDMGG-----SSAPLDVPTSTGQI 223

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.9 bits (227), Expect = 1e-22
 Identities = 52/258 (20%), Positives = 88/258 (34%), Gaps = 32/258 (12%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVS 107
             +ITG +  IG  +A    ++  R+V+  R  E   + +  +     +  A+    D+S
Sbjct: 3   AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62

Query: 108 K----VEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
                ++ C+  +D +   FGR D LV NA            D    A A  I+   +  
Sbjct: 63  LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAEL 122

Query: 164 GTYFAIPYLKQTKGKI----------------IVVASAAGWLPPPRMSFYNASKAAKIAL 207
               A+  L   +                   + +  A   LP P    Y  +K A   L
Sbjct: 123 FGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGL 182

Query: 208 YETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT-E 265
                +E     I +  V PGL        +        E  +E R  ++ L   + +  
Sbjct: 183 TRAAALELAPRHIRVNAVAPGLSLLPPAMPQ--------ETQEEYRR-KVPLGQSEASAA 233

Query: 266 ECAKAIVNSACRGDRYLT 283
           + A AI     +   Y+T
Sbjct: 234 QIADAIAFLVSKDAGYIT 251

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

 Score = 88.8 bits (219), Expect = 2e-21
 Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 13/244 (5%)

Query: 46  AGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
           +GK +L+TG +S   I   +A    R  A L    + ++    V + A  +GS   + + 
Sbjct: 4   SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS--DIVLQ 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            DV++            + + + D  V + G  P    +             I    S+Y
Sbjct: 62  CDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSY 121

Query: 164 GTYFAIPYLKQTKGK---IIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-I 219
                    +        ++ ++        P  +    +KA+  A    +    G + +
Sbjct: 122 SFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGV 181

Query: 220 GITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD 279
            +  ++ G I +    G    +      +         +      E+   +         
Sbjct: 182 RVNAISAGPIRTLAASGIKDFRKMLAHCEA-----VTPIRRTVTIEDVGNSAAFLCSDLS 236

Query: 280 RYLT 283
             ++
Sbjct: 237 AGIS 240

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 79.6 bits (195), Expect = 5e-18
 Identities = 39/259 (15%), Positives = 71/259 (27%), Gaps = 45/259 (17%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
            +++I+G ++GIG            ++V +  R+ ++                   AD+S
Sbjct: 2   SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI------------------ADLS 43

Query: 108 KVEDCKH-FVDVTMEHFGRLDHLVTNAG----------VVPMCLFEDYTDITKPAPAMDI 156
             E  K    DV  +    +D LV  AG          VV +  F     +    PA+  
Sbjct: 44  TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKK 103

Query: 157 NFWGSAYGTYFAIPY----------LKQTKGKIIVVASAAGWLPPPRMSF-YNASKAAKI 205
               +A                   L    G+     +          +  Y  SK A  
Sbjct: 104 GHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALT 163

Query: 206 AL-YETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPT 264
               +         + +  + PG  E+ +      +        + I      +      
Sbjct: 164 VAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDP----RYGESIAKFVPPMGRRAEP 219

Query: 265 EECAKAIVNSACRGDRYLT 283
            E A  I         Y+ 
Sbjct: 220 SEMASVIAFLMSPAASYVH 238

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

 Score = 78.6 bits (192), Expect = 1e-17
 Identities = 41/243 (16%), Positives = 74/243 (30%), Gaps = 12/243 (4%)

Query: 46  AGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            GK  LI G ++   I   +A     + A L      E   + V   A+ +         
Sbjct: 4   KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--SPYVYE 61

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINF--WGS 161
            DVSK E  K   +   +  G LD +V +    P    E     T  +           S
Sbjct: 62  LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYS 121

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IG 220
                  +  L      ++ ++           +    +KAA  +    L V+ G   I 
Sbjct: 122 LIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIR 181

Query: 221 ITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR 280
           +  ++ G I +  + G          +  +  ++   L      EE   A +        
Sbjct: 182 VNALSAGPIRTLASSGIADF-----RMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSS 236

Query: 281 YLT 283
            ++
Sbjct: 237 GVS 239

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 71.5 bits (174), Expect = 1e-15
 Identities = 26/177 (14%), Positives = 44/177 (24%), Gaps = 17/177 (9%)

Query: 44  DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            V GK  ++   +  +G   A   A   A +VL  R+  + +  AD              
Sbjct: 20  SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTA 77

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
           A+ +                     + T   +    L +             I       
Sbjct: 78  AETADDASRAE-------AVKGAHFVFTAGAIGLELLPQAAWQ-----NESSIEIVADYN 125

Query: 164 GTYFAIP--YLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD 218
                         KGK      A G L    +      +A    L+E+    F  +
Sbjct: 126 AQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLK-LKLHRACIAKLFESSEGVFDAE 181

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

 Score = 73.2 bits (178), Expect = 1e-15
 Identities = 25/139 (17%), Positives = 40/139 (28%), Gaps = 18/139 (12%)

Query: 49  VVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPA--- 104
           V L+TGA+  +G+ +A         + L   R   +   ++          A+ + A   
Sbjct: 4   VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63

Query: 105 --------------DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKP 150
                          V+    C   V     H+GR D LV NA            +    
Sbjct: 64  NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 123

Query: 151 APAMDINFWGSAYGTYFAI 169
               D     +A    F  
Sbjct: 124 PCVGDREAMETATADLFGS 142

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

 Score = 72.0 bits (175), Expect = 2e-15
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 7/187 (3%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRAR-LVLVARRERQLREVADQAELMGSPFALAIPA 104
               VL+TG + G+G  +A   ARR A  L+LV+R         +    + +  A    A
Sbjct: 8   PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVA 67

Query: 105 DVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYG 164
                +       +           V +A         D     +   A      G+   
Sbjct: 68  ACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGA--- 124

Query: 165 TYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITIV 224
                   +      ++ +S A     P +  Y    A    L +  R +    +  T V
Sbjct: 125 RNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLAQQRRSDG---LPATAV 181

Query: 225 TPGLIES 231
             G    
Sbjct: 182 AWGTWAG 188

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 20/183 (10%), Positives = 50/183 (27%), Gaps = 2/183 (1%)

Query: 50  VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV 109
           V + G +  +GK LA   A     +V+ +RRE +    A +   +    A          
Sbjct: 3   VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA-GDASITGMKNEDA 61

Query: 110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAI 169
            +      +T+     +D       ++   +                     +     A 
Sbjct: 62  AEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE 121

Query: 170 PYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGL 228
               +     +    AA +        ++          + + +    +  G+  +  G 
Sbjct: 122 VLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGP 181

Query: 229 IES 231
           + +
Sbjct: 182 LSN 184

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 62.1 bits (149), Expect = 7e-12
 Identities = 40/249 (16%), Positives = 69/249 (27%), Gaps = 11/249 (4%)

Query: 46  AGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIP 103
            GK +L++G    S I  H+A     + A+LVL      +L +         +P      
Sbjct: 5   DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDV 64

Query: 104 ADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAY 163
            +   +      V   +    +LD +V + G +P            P   +      SAY
Sbjct: 65  QNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAY 124

Query: 164 GTYF---AIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIG 220
                  A+  +    G I+ +        P       A  A +       R      + 
Sbjct: 125 SYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVR 184

Query: 221 ITIVTPGLIESEITGGKFLNKNG--KLEVDQEIRDVQISLLPVQPT----EECAKAIVNS 274
             +V  G I +           G       Q + +      P+          AK +   
Sbjct: 185 SNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCAL 244

Query: 275 ACRGDRYLT 283
                   T
Sbjct: 245 LSDWLPATT 253

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

 Score = 57.8 bits (138), Expect = 3e-10
 Identities = 39/278 (14%), Positives = 65/278 (23%), Gaps = 45/278 (16%)

Query: 44  DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVA------------- 88
           D+ GK   I G +   G G  +A   A   A +++                         
Sbjct: 5   DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVL 64

Query: 89  ------------------DQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLV 130
                             D  E +            S     +   +   + FG +D LV
Sbjct: 65  PDGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILV 124

Query: 131 TNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP 190
            +    P           K   A       S          +    G  I +   A    
Sbjct: 125 HSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERI 184

Query: 191 PPRMSF-YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQ 249
            P      +++KAA  +    L  E G    I + T         G         +    
Sbjct: 185 IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTI------SAGPLGSRAAKAIGFID 238

Query: 250 EIRDVQISLLP----VQPTEECAKAIVNSACRGDRYLT 283
            + +   +  P    +   +E   A           +T
Sbjct: 239 TMIEYSYNNAPIQKTLTA-DEVGNAAAFLVSPLASAIT 275

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.5 bits (129), Expect = 3e-09
 Identities = 26/226 (11%), Positives = 69/226 (30%), Gaps = 36/226 (15%)

Query: 47  GKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVAD--------------- 89
             +  I G   ++G G  +A E ++R  +++           + +               
Sbjct: 2   EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKD 61

Query: 90  ----------------QAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHLVTNA 133
                            A  +          ++ +    +   ++  + +G+++ LV + 
Sbjct: 62  KKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSL 121

Query: 134 GVVPMCLFE-DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPP 192
                   +   T       A+  + +       + +  +K     I +   A+  + P 
Sbjct: 122 ANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVPG 181

Query: 193 RMSFYNASKAAKIALYETLRVEFGGDIGITI--VTPGLIESEITGG 236
                +++KAA  +    L    G +  I I  ++ G ++S     
Sbjct: 182 YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATA 227

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 22/186 (11%), Positives = 43/186 (23%), Gaps = 6/186 (3%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K+VL+TG +  IG H   E        V+         +   + E++          D+ 
Sbjct: 2   KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 61

Query: 108 KVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYF 167
             +  +            + H      V                  + +      Y    
Sbjct: 62  DRKGLEKVFK--EYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK 119

Query: 168 AIPYLKQT----KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGITI 223
            +     T      +   +       P    + Y  +K A   +   L           I
Sbjct: 120 FVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179

Query: 224 VTPGLI 229
           +     
Sbjct: 180 LRYFNP 185

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 47  GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSP-FALAIPAD 105
           G +VL+TGA+  +  H+  +      ++   AR   +L  +  + +      F  A+  D
Sbjct: 11  GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70

Query: 106 VSKVEDCKHFVDVTMEHF 123
           + K       +       
Sbjct: 71  MLKQGAYDEVIKGAAGVA 88

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 26/192 (13%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARR-----ERQLREVADQAELMGSPFALAI 102
            V LITG +   G +LA     +   +  + RR       ++  +    +          
Sbjct: 2   NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLH 61

Query: 103 PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSA 162
             D++   D    V +  E      + +     V +                D++  G+ 
Sbjct: 62  YGDLT---DSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTA-------DVDGVGTL 111

Query: 163 YGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM-----------SFYNASKAAKIALYETL 211
                          K    +++  +     +           S Y A+K     +    
Sbjct: 112 RLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNF 171

Query: 212 RVEFGGDIGITI 223
           R  +       I
Sbjct: 172 REAYNLFAVNGI 183

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 20/160 (12%), Positives = 40/160 (25%), Gaps = 11/160 (6%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS 107
           K + + GA+   G  L    A     +       + L     QA    + F   +  +V 
Sbjct: 4   KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVP 63

Query: 108 KVEDCKHFVDVTM-----------EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDI 156
            ++       +                  L      AG +   ++    D +   P   +
Sbjct: 64  LMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAV 123

Query: 157 NFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSF 196
             W   +     +  L      +        +   P   F
Sbjct: 124 PMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLF 163

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 10/71 (14%), Positives = 21/71 (29%)

Query: 46  AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPAD 105
           A K + I GA+   G     +  +    + ++ R   +L     +   +     L     
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADV 61

Query: 106 VSKVEDCKHFV 116
              V      +
Sbjct: 62  DKTVAGQDAVI 72

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 29/188 (15%), Positives = 48/188 (25%), Gaps = 21/188 (11%)

Query: 48  KVVLITGASSGIGKHLAYEYARRRARLVLVA--RRERQLREVADQAELMGSPFALAIPAD 105
             VL+TGAS   G+ +  +      + V     R  +   ++  +A++            
Sbjct: 4   PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADV------------ 51

Query: 106 VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFED----YTDITKPAPAMDINFWGS 161
                      D     F  +D LV     VP                            
Sbjct: 52  ---FIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVD 108

Query: 162 AYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGDIGI 221
             G    I   K    K IVV  + G   P        +    +   +  +         
Sbjct: 109 WIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPY 168

Query: 222 TIVTPGLI 229
           TI+  G +
Sbjct: 169 TIIRAGGL 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	100.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	100.0
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	100.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	100.0
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	100.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	100.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	100.0
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	100.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	100.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	100.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	100.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	100.0
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	100.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	100.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	100.0
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	100.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	100.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	100.0
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	100.0
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	100.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	100.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	100.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	100.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	100.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	100.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	100.0
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	100.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	100.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	100.0
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	100.0
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	100.0
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	100.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	100.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	100.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	100.0
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	100.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	100.0
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	100.0
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	100.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	100.0
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	100.0
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	100.0
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	100.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	100.0
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	100.0
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	100.0
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	100.0
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	100.0
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	100.0
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	100.0
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	100.0
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	100.0
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	100.0
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	100.0
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	100.0
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	100.0
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	100.0
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.97
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.78
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.74
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.66
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.64
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.62
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.62
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.62
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.61
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.61
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.6
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.56
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.54
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.49
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.49
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.49
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.47
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.47
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.44
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.44
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.43
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.42
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.41
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.36
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.35
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.09
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.06
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.02
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	99.02
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.0
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.96
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	98.81
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.78
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.05
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.91
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.84
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.82
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.81
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.77
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.75
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.7
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.63
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.61
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.51
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.43
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.41
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.32
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.27
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.18
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.18
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.17
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.08
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.06
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.03
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.99
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	96.94
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.8
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.78
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.73
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.68
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.63
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.62
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	96.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.59
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.58
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.56
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.56
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.56
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.56
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.53
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.51
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.49
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.46
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.4
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.38
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.34
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.28
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.26
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.21
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.19
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.16
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.16
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.05
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.02
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.83
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.82
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.75
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.69
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.68
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.66
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.58
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.54
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.52
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.29
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.89
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.76
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.44
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.39
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	94.35
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.32
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.18
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.16
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.05
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	94.04
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.92
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.92
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	93.83
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	93.83
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.78
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.78
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.72
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.7
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.52
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	93.28
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	93.26
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.21
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.18
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.89
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	92.79
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.7
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.63
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.6
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.32
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.16
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.99
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.82
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.78
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	91.73
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.37
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.29
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.08
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	90.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.9
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	90.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	90.72
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.7
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	90.66
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	90.65
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	90.62
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	90.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	90.52
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.45
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	90.44
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.28
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.28
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.17
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	90.14
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.98
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.98
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	89.86
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	89.78
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	89.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.73
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	89.62
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.5
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.17
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	89.09
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.01
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.77
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.56
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.49
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.47
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.44
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	88.43
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	88.17
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	88.07
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	88.05
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	87.92
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.82
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.65
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	87.54
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.34
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.28
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.12
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	87.12
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	87.04
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	87.02
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	86.96
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	86.95
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	86.89
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	86.75
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.24
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	86.13
d2fr1a2	209	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.92
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	85.89
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	85.81
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.6
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.98
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	84.66
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.42
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.93
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	83.89
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.78
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	83.21
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.15
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	83.11
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	82.8
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	82.65
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	82.14
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	81.55
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	80.9
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	80.59
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.47
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.15

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-53  Score=362.54  Aligned_cols=236  Identities=23%  Similarity=0.337  Sum_probs=210.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.|+++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..++ ++.++++|++|+++++++++++
T Consensus         4 ~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_           4 SDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             GGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHH
Confidence            455789999999999999999999999999999999999999999999999987764 6899999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .+++|++|++|||||.....++ + .+.++|++++++|+.++++++|+++|.|++++ |+||++||..+..+.+++.+|+
T Consensus        83 ~~~~g~iDilvnnAG~~~~~~~-e-~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~  160 (255)
T d1fmca_          83 ISKLGKVDILVNNAGGGGPKPF-D-MPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA  160 (255)
T ss_dssp             HHHHSSCCEEEECCCCCCCCCT-T-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHH
T ss_pred             HHHcCCCCEeeeCCcCCCCCcc-c-CCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccccccccch
Confidence            9999999999999998876654 4 35588999999999999999999999997765 7999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l  274 (287)
                      ++|+|+.+|+|++|.|++++ ||||+|+||+++|++.....         .++..+......|   +++|||||++++||
T Consensus       161 asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~---------~~e~~~~~~~~~pl~R~g~pedvA~~v~fL  231 (255)
T d1fmca_         161 SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI---------TPEIEQKMLQHTPIRRLGQPQDIANAALFL  231 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTC---------CHHHHHHHHHTCSSCSCBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccC---------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999998 99999999999999876532         2333444444444   55799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      +|++++|+|||.+
T Consensus       232 ~S~~s~~itG~~i  244 (255)
T d1fmca_         232 CSPAASWVSGQIL  244 (255)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCchhcCCcCCEE
Confidence            9999999999964

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=3.1e-53  Score=363.53  Aligned_cols=242  Identities=27%  Similarity=0.344  Sum_probs=203.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |+||+++||||++|||+++|++|+++|++|++++|+ .+.+++..+++...++.++.++++|++|+++++++++++.+++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999997 4667777777766555679999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|+||||||.....++.+. +.++|++.+++|+.++++++|+++|.|++++ |+||++||..+..+.|++.+|+++|+
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  160 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDF-PTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKH  160 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCcEEEeecccccCCchhhh-hHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhh
Confidence            999999999999888777765 5589999999999999999999999998765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccc--hH---HHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEV--DQ---EIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+.+|+++++.|++++ ||||+|+||+++|+|.+............  ++   +......+..++++|||||++++||+|
T Consensus       161 al~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S  240 (260)
T d1x1ta1         161 GVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS  240 (260)
T ss_dssp             HHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCCBCHHHHHHHHHHHHS
T ss_pred             hHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999998 99999999999999987654332222111  11   223344455566689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+|||.+
T Consensus       241 ~~a~~itG~~i  251 (260)
T d1x1ta1         241 DAAAQITGTTV  251 (260)
T ss_dssp             GGGTTCCSCEE
T ss_pred             hhhCCCcCCEE
Confidence            99999999964

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.2e-53  Score=360.07  Aligned_cols=236  Identities=24%  Similarity=0.322  Sum_probs=209.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      .+..+++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+. ++..+++|++|+++++++++++
T Consensus         3 n~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           3 NYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             CCCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHH
Confidence            355788999999999999999999999999999999999999999999999977654 6999999999999999999999


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .+++|++|++|||||.....++.+. +.++|++++++|+.++++++++++|.|++++ |+||++||..+..+.++..+|+
T Consensus        82 ~~~~g~iDilvnnag~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~  160 (251)
T d2c07a1          82 LTEHKNVDILVNNAGITRDNLFLRM-KNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYS  160 (251)
T ss_dssp             HHHCSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHH
T ss_pred             HHhcCCceeeeeccccccccccccc-cHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHH
Confidence            9999999999999999888777665 4589999999999999999999999997655 9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---CCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~evA~~i~~l  274 (287)
                      +||+|+++|+|+++.|++++ ||||+|+||+++|+|....          .++..+......|+   ++|||||++++||
T Consensus       161 asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~----------~~~~~~~~~~~~pl~R~~~pedvA~~v~fL  230 (251)
T d2c07a1         161 SSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI----------SEQIKKNIISNIPAGRMGTPEEVANLACFL  230 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C----------CHHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc----------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999999988 9999999999999997653          24455555555555   4799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      +|++++|+|||.+
T Consensus       231 ~S~~s~~itG~~i  243 (251)
T d2c07a1         231 SSDKSGYINGRVF  243 (251)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCchhCCCcCcEE
Confidence            9999999999964

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=3.4e-53  Score=362.56  Aligned_cols=242  Identities=24%  Similarity=0.285  Sum_probs=210.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++... ++.++..+++|++|+++++++++++.++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999988887654 3457999999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      +|++|+||||||+.......+..+.++|++++++|+.++++++|+++|.|+++ +|+||++||..+..+.|+...|+++|
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  160 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAK  160 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHH
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHH
Confidence            99999999999987554333334568999999999999999999999998754 59999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---CCHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~evA~~i~~l~~~  277 (287)
                      +|+.+|+++|+.|++++ ||||+|+||+++|+|.+..+......  ..++..+.+....|+   ++|||||+.++||+|+
T Consensus       161 aal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~--~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~S~  238 (258)
T d1iy8a_         161 HGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPE--NPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSD  238 (258)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTT--CHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcc--cHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            99999999999999998 99999999999999986543322111  124445555555554   5799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.+
T Consensus       239 ~s~~itG~~i  248 (258)
T d1iy8a_         239 DASYVNATVV  248 (258)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhcCCcCceE
Confidence            9999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.9e-53  Score=360.72  Aligned_cols=236  Identities=26%  Similarity=0.389  Sum_probs=208.8

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+|+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++..+++|++|+++++++++++.++
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999888886654567999999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCC-CCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAG-WLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~-~~~~~~~~~Y~as  200 (287)
                      +|++|++|||||.....++.+. +.++|++.+++|+.++++++|+++|.|++++ |+||+++|..+ ..+.++..+|+++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~as  159 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEF-PLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAAS  159 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhC-CHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHH
Confidence            9999999999999887777664 5589999999999999999999999998765 89999999765 4577889999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~  276 (287)
                      |+|+.+|+++++.|++++ ||||+|+||+++|+|.+....        +++..+......|   +++|||||++++||+|
T Consensus       160 Kaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~--------~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S  231 (251)
T d1vl8a_         160 KGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS--------DPEKLDYMLKRIPLGRTGVPEDLKGVAVFLAS  231 (251)
T ss_dssp             HHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT--------CHHHHHHHHHTCTTSSCBCGGGGHHHHHHHHS
T ss_pred             HHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC--------CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999988 999999999999999875432        2333444444444   5579999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+|||.+
T Consensus       232 ~~a~~itG~~i  242 (251)
T d1vl8a_         232 EEAKYVTGQII  242 (251)
T ss_dssp             GGGTTCCSCEE
T ss_pred             chhCCCcCcEE
Confidence            99999999964

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=1.5e-52  Score=358.80  Aligned_cols=239  Identities=26%  Similarity=0.337  Sum_probs=212.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++|+||++|||||++|||+++|++|+++|++|++++|+.++++++.++++..+ .++..+++|++|+++++++++++.+
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-FKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEeeCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999987765 4788999999999999999999999


Q ss_pred             hcC-CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFG-RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~-~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++ ++|++|||||.....++.+. +.++|++++++|+.+++++++.++|.|++++ |+||++||..+..+.|+...|++
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~a  160 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDY-TVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGA  160 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HhCCCceEEEECCceeccCccccC-CHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccccchHH
Confidence            986 79999999999887777664 5589999999999999999999999998754 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---CCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~evA~~i~~l~  275 (287)
                      +|+|+.+|+|+++.|++++ ||||+|+||+|+|+|.+.....+     ..++..++.....|+   ++|||||+.++||+
T Consensus       161 sKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~-----~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~  235 (259)
T d2ae2a_         161 TKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDP-----EQKENLNKLIDRCALRRMGEPKELAAMVAFLC  235 (259)
T ss_dssp             HHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSH-----HHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhch-----hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999999999988 99999999999999876433221     123444544455554   57999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |++++|+|||.+
T Consensus       236 S~~s~~itG~~i  247 (259)
T d2ae2a_         236 FPAASYVTGQII  247 (259)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhCCCcCcEE
Confidence            999999999964

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-53  Score=358.70  Aligned_cols=229  Identities=24%  Similarity=0.345  Sum_probs=206.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|++++++++.+++.    .++..+.+|++|+++++++++++.+++
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            6899999999999999999999999999999999999999998888773    257889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|++|||||.....++.+. +.++|++.+++|+.+++.++|+++|.|++++ |+||++||..+..+.++.++|++||+
T Consensus        77 g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKa  155 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRM-KDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKA  155 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             CCcceehhhhhhccccccccc-cccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHH
Confidence            999999999999888877765 5589999999999999999999999997655 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~  278 (287)
                      |+++|+|+++.|++++ ||||+|+||+++|+|.+...          ++..+......|   +++|||||+.++||+|++
T Consensus       156 al~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~----------~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~  225 (243)
T d1q7ba_         156 GLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALS----------DDQRAGILAQVPAGRLGGAQEIANAVAFLASDE  225 (243)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSC----------HHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhh----------hhHHHHHHhcCCCCCCCCHHHHHHHHHHHhCch
Confidence            9999999999999998 99999999999999876532          223333444444   457999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       226 s~~itGq~i  234 (243)
T d1q7ba_         226 AAYITGETL  234 (243)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCCcCCeE
Confidence            999999964

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=100.00  E-value=2e-52  Score=355.61  Aligned_cols=235  Identities=23%  Similarity=0.359  Sum_probs=195.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|++.+.  ..+.++..+ .++..+++|++|+++++++++++.+++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~~g-~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRNLG-RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHHcC-CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999999999987542  233444444 479999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|++|||||.....++.+. +.++|++.+++|+.++++++|+++|.|++++ |+||++||..+..+.++...|++||+
T Consensus        79 G~iDilVnnAG~~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  157 (247)
T d2ew8a1          79 GRCDILVNNAGIYPLIPFDEL-TFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKA  157 (247)
T ss_dssp             SCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChHhC-CHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhc
Confidence            999999999999887777665 5589999999999999999999999998765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      |+.+|+++++.|++++ ||||+|+||+++|+|.+.....+.     .+...+...+..++++|||||+.++||+|++++|
T Consensus       158 al~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~-----~~~~~~~~~~l~r~~~pedvA~~v~fL~S~~s~~  232 (247)
T d2ew8a1         158 ANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAM-----FDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASF  232 (247)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECCC-----------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGTT
T ss_pred             cHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchh-----HHHHHHHhccCCCCCCHHHHHHHHHHHhCchhcC
Confidence            9999999999999998 999999999999999875432221     1122223334556778999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      +|||.+
T Consensus       233 itG~~i  238 (247)
T d2ew8a1         233 ITGQTL  238 (247)
T ss_dssp             CCSCEE
T ss_pred             CcCCeE
Confidence            999964

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-52  Score=357.83  Aligned_cols=238  Identities=24%  Similarity=0.289  Sum_probs=185.4

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +.+|+||+++||||++|||+++|++|+++|++|++++|+++++++..+++...+. ++..+.+|++++++++++++++.+
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999877654 699999999999999999999999


Q ss_pred             hc-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HF-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++ |++|++|||||.....++.+. +.++|++++++|+.++++++|+++|.|++++ |+||++||..+..+.++...|++
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~a  160 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDY-TAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSA  160 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHH
T ss_pred             HhCCCcccccccccccCCCchhhC-CHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccccccccccc
Confidence            98 789999999999888777664 5589999999999999999999999998655 99999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+.+|+|++|.|++++ ||||+|+||+++|+|.......+      ..+......+..++++|||||++++||+|++
T Consensus       161 sKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~------~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~  234 (259)
T d1xq1a_         161 TKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDE------FKKVVISRKPLGRFGEPEEVSSLVAFLCMPA  234 (259)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------CCGGGGHHHHHHHTSGG
T ss_pred             cccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHH------HHHHHHhCCCCCCCcCHHHHHHHHHHHhCch
Confidence            9999999999999999998 99999999999999987543211      1111222334445568999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       235 s~~iTG~~i  243 (259)
T d1xq1a_         235 ASYITGQTI  243 (259)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCCcCcEE
Confidence            999999964

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-53  Score=358.15  Aligned_cols=235  Identities=26%  Similarity=0.326  Sum_probs=203.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+++||+++||||++|||+++|++|+++|++|++++|+++.++++.+++     ..+.++++|++|+++++++++++.++
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999888776654     24788999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|++|++|||||........+..+.++|++.+++|+.+++.++|+++|.|++++|+||++||..+..+.++...|+++|+
T Consensus        77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  156 (250)
T d1ydea1          77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKG  156 (250)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccccCcchhHHHHh
Confidence            99999999999987655444444668899999999999999999999999887899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---CCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---LPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+.+|+|++|.|++++ ||||+|+||+++|+|.+......+    ..++..+.....   .++++|||||++++||+|+ 
T Consensus       157 al~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~~~~~~pl~R~g~p~eva~~v~fL~Sd-  231 (250)
T d1ydea1         157 AVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMP----DPRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-  231 (250)
T ss_dssp             HHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSS----SHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCC----CHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-
Confidence            9999999999999998 999999999999998765432221    123333333333   4455799999999999997 


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       232 a~~itG~~i  240 (250)
T d1ydea1         232 ANFCTGIEL  240 (250)
T ss_dssp             CTTCCSCEE
T ss_pred             cCCCcCCeE
Confidence            899999964

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8e-52  Score=350.76  Aligned_cols=227  Identities=25%  Similarity=0.343  Sum_probs=204.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|++++++++.+++.    .++.++++|++|+++++++++++.+++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999888877763    358889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|++|||||.....++.+. +.++|++++++|+.++++++|+++|.|++++ |+||++||..+..+.++...|+++|+
T Consensus        79 g~idilinnAG~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  157 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDY-ALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKF  157 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHH
T ss_pred             CCCeEEEECCcccCCCchhhC-CHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHHH
Confidence            999999999999888877764 5589999999999999999999999997754 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDRY  281 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~~  281 (287)
                      |+++|+|+++.|++++ ||||+|+||+++|+|.+......            ...+..++++|||||++++||++++++|
T Consensus       158 al~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~------------~~~pl~R~~~p~diA~~v~fL~s~~s~~  225 (244)
T d1nffa_         158 AVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDI------------FQTALGRAAEPVEVSNLVVYLASDESSY  225 (244)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTTC------------SCCSSSSCBCHHHHHHHHHHHHSGGGTT
T ss_pred             HHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHHH------------HhccccCCCCHHHHHHHHHHHhChhhCC
Confidence            9999999999999998 99999999999999976432110            1123445668999999999999999999


Q ss_pred             ccCCCC
Q 042560          282 LTQPSW  287 (287)
Q Consensus       282 itG~~~  287 (287)
                      +|||.+
T Consensus       226 itG~~i  231 (244)
T d1nffa_         226 STGAEF  231 (244)
T ss_dssp             CCSCEE
T ss_pred             CcCCEE
Confidence            999964

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=2e-52  Score=357.94  Aligned_cols=240  Identities=23%  Similarity=0.276  Sum_probs=210.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .||++|||||++|||+++|++|+++|++|++++|++++++++.++++..+. ++..+++|++|+++++++++++.+++|+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            389999999999999999999999999999999999999999999987654 6999999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHH--HhcC-CCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPY--LKQT-KGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|++|||||.....++.+. +.++|++.+++|+.++++++|+++|.  |.++ .|+||+++|..+..+.++..+|+++|+
T Consensus        80 iDilVnnAG~~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKa  158 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAEL-ADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKH  158 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCEEEecccccCCCChHHc-CHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHH
Confidence            9999999999888777665 55899999999999999999999996  3443 489999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhhhcCCCCC---CHHHHHHHHHHhhcc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACR  277 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~p~evA~~i~~l~~~  277 (287)
                      |+.+|+|+||.|++++ ||||+|+||+++|+|.+........ .....++..+.+....|++   +|||||+.++||+|+
T Consensus       159 al~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~S~  238 (257)
T d2rhca1         159 GVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGP  238 (257)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCc
Confidence            9999999999999998 9999999999999997654221111 1122355666666666655   799999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.+
T Consensus       239 ~s~~itG~~i  248 (257)
T d2rhca1         239 GAAAVTAQAL  248 (257)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhcCCcCceE
Confidence            9999999964

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=100.00  E-value=5.2e-52  Score=354.95  Aligned_cols=240  Identities=23%  Similarity=0.292  Sum_probs=206.5

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+|+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++    +.++..+++|++|+++++++++++.++
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----~~~~~~~~~Dvt~~~~v~~~~~~~~~~   76 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI----GPAACAIALDVTDQASIDRCVAELLDR   76 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999998888776    246889999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc-C-CCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-T-KGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~-~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +|++|++|||||.....++.+. +.++|++.+++|+.++++++++++|.|.+ + +|+||++||..+..+.++.++|+++
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  155 (256)
T d1k2wa_          77 WGSIDILVNNAALFDLAPIVEI-TRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCAT  155 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCccEEEeecccccccccccC-CHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhh
Confidence            9999999999999887777664 55899999999999999999999997543 3 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhhh---cCCCCCCHHHHHHHHHHhh
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~  275 (287)
                      |+|+.+|+++++.|++++ ||||+|+||+++|+|.+........ .....++..+...   +..++++|||||++++||+
T Consensus       156 Kaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~  235 (256)
T d1k2wa_         156 KAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLA  235 (256)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999998 9999999999999997643221100 0011223333333   4455568999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |++++|+|||.+
T Consensus       236 S~~a~~iTG~~i  247 (256)
T d1k2wa_         236 TPEADYIVAQTY  247 (256)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhCCccCceE
Confidence            999999999964

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-51  Score=348.90  Aligned_cols=228  Identities=26%  Similarity=0.322  Sum_probs=199.9

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+|+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++      ++..+++|++|+++++++++++.++
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~   74 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAH   74 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHh
Confidence            6789999999999999999999999999999999999999888776654      3677899999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      +|++|++|||||+....++.+. +.++|++.+++|+.++++++|+++|.|+++++.+++++|..+..+.++..+|+++|+
T Consensus        75 ~g~iDilVnnAG~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~~~~~~Y~asKa  153 (242)
T d1ulsa_          75 LGRLDGVVHYAGITRDNFHWKM-PLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNLGQANYAASMA  153 (242)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCTTCHHHHHHHH
T ss_pred             cCCceEEEECCcccccCchhhC-cchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCCCCCcchHHHHH
Confidence            9999999999999887777664 558999999999999999999999999887755444444467788999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~  278 (287)
                      |+.+|+|+++.|++++ ||||+|+||+++|+|....          +++..+......|   +++|||||++++||+|++
T Consensus       154 al~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~----------~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~  223 (242)
T d1ulsa_         154 GVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV----------PEKVREKAIAATPLGRAGKPLEVAYAALFLLSDE  223 (242)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS----------CHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC----------CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhchh
Confidence            9999999999999998 9999999999999997653          2334444444445   457999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       224 s~~itG~~i  232 (242)
T d1ulsa_         224 SSFITGQVL  232 (242)
T ss_dssp             GTTCCSCEE
T ss_pred             hCCCCCcEE
Confidence            999999964

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=100.00  E-value=3.5e-52  Score=356.77  Aligned_cols=242  Identities=24%  Similarity=0.275  Sum_probs=210.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|+.+.++++.++++..+. ++..+++|++|+++++++++++.+++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999887654 68999999999999999999999999


Q ss_pred             CCccEEEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      |++|++|||||.... .++.+ .+.++|++++++|+.++++++++++|.|.++ +|+||++||..+..+.|++.+|+++|
T Consensus        81 g~iDilVnnaG~~~~~~~~~~-~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asK  159 (260)
T d1zema1          81 GKIDFLFNNAGYQGAFAPVQD-YPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSK  159 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGG-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHH
T ss_pred             CCCCeehhhhccccccCcccc-ccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHH
Confidence            999999999998755 44555 4568999999999999999999999988654 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCccc------CcCCCccchHHHHhhhhcCCCC---CCHHHHHHHH
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFL------NKNGKLEVDQEIRDVQISLLPV---QPTEECAKAI  271 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~p~evA~~i  271 (287)
                      +|+.+|+|+++.|++++ ||||+|+||+++|+|......      ........+++..+.+....|+   ++|||||+++
T Consensus       160 aal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v  239 (260)
T d1zema1         160 GAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVV  239 (260)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHH
T ss_pred             HHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence            99999999999999998 999999999999998643211      1111222334555555555555   5799999999


Q ss_pred             HHhhccCCccccCCCC
Q 042560          272 VNSACRGDRYLTQPSW  287 (287)
Q Consensus       272 ~~l~~~~~~~itG~~~  287 (287)
                      +||+|+.++|+|||.+
T Consensus       240 ~fL~S~~s~~itG~~i  255 (260)
T d1zema1         240 AFLLGDDSSFMTGVNL  255 (260)
T ss_dssp             HHHHSGGGTTCCSCEE
T ss_pred             HHHhCchhcCccCCeE
Confidence            9999999999999964

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=8.2e-52  Score=354.35  Aligned_cols=235  Identities=30%  Similarity=0.464  Sum_probs=207.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER-QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+|+||+++||||++|||+++|++|+++|++|++++|+.+ .++++.++++..+ .++..+++|++|+++++++++++.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999854 6777788887765 4799999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++|++|++|||||.....++.+. +.++|++.+++|+.++++++|+++|.|.+++  ++||++||..+..+.|++.+|++
T Consensus        82 ~~G~iDiLVnnAG~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~a  160 (261)
T d1geea_          82 EFGKLDVMINNAGLENPVSSHEM-SLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAA  160 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HhCCCCEeeccceecCCcchhhc-CHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCcccccccc
Confidence            99999999999999888777664 5589999999999999999999999997654  46999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~  275 (287)
                      +|+|+.+|+++|+.|++++ ||||+|+||+++|+|......        +++..+......|   +++|||||++++||+
T Consensus       161 sKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~--------~~~~~~~~~~~~pl~R~~~pediA~~v~fL~  232 (261)
T d1geea_         161 SKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA--------DPEQRADVESMIPMGYIGEPEEIAAVAAWLA  232 (261)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH--------SHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             CCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcC--------CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998 999999999999998764321        2344444444444   557999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |++++|+|||.+
T Consensus       233 S~~s~~itG~~i  244 (261)
T d1geea_         233 SSEASYVTGITL  244 (261)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhcCCcCCeE
Confidence            999999999964

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=1.2e-51  Score=351.65  Aligned_cols=232  Identities=23%  Similarity=0.333  Sum_probs=205.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|+.+.++++.+++..  +.++.++++|++|+++++++++++.+++
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999988887753  3468999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      |++|++|||||.....++.+. +.++|++++++|+.+++.++++++|.|++++  |+||++||..+..+.|+...|+++|
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~-~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asK  159 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEET-TTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASK  159 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCceEEEeccccccccchhcc-cccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHH
Confidence            999999999999988877775 5589999999999999999999999998765  5899999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--hCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh
Q 042560          202 AAKIALYETLRVE--FGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA  275 (287)
Q Consensus       202 aal~~~~~~la~e--~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~  275 (287)
                      +|+.+|++++|.|  ++++ ||||+|+||+++|+|.+...         .++.........|   +++|||||++++||+
T Consensus       160 aal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~---------~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~  230 (251)
T d1zk4a1         160 GAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP---------GAEEAMSQRTKTPMGHIGEPNDIAYICVYLA  230 (251)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST---------THHHHHTSTTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             HHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcC---------CHHHHHHHHhCCCCCCCcCHHHHHHHHHHHh
Confidence            9999999999998  5666 99999999999999876532         1222333333444   557999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |++++|+|||.+
T Consensus       231 S~~s~~itG~~i  242 (251)
T d1zk4a1         231 SNESKFATGSEF  242 (251)
T ss_dssp             SGGGTTCCSCEE
T ss_pred             CchhCCCcCcEE
Confidence            999999999964

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-51  Score=350.64  Aligned_cols=232  Identities=25%  Similarity=0.295  Sum_probs=198.6

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++||+++||||++|||+++|++|+++|++|++++|+++..+ ..+++      ....+++|++|+++++++++++.+++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            378999999999999999999999999999999999987643 33333      24568899999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|++|||||.....++.+. +.++|++++++|+.++++++|+++|.|++++ |+||+++|..+..+.++...|+++|+
T Consensus        75 G~iDiLVnnAG~~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  153 (248)
T d2d1ya1          75 GRVDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKG  153 (248)
T ss_dssp             SCCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHH
T ss_pred             CCCCeEEEeCcCCCCCChhhC-CHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHH
Confidence            999999999999888777765 5589999999999999999999999998765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccC
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+.+|+|++++|++++ ||||+|+||+++|+|..........    +++..+...   +..++++|||||+.++||+|++
T Consensus       154 al~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~----~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~  229 (248)
T d2d1ya1         154 GLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPD----PERTRRDWEDLHALRRLGKPEEVAEAVLFLASEK  229 (248)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC------------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCC----HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCch
Confidence            9999999999999998 9999999999999987654322211    223333333   3444557999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|+|||.+
T Consensus       230 s~~itG~~i  238 (248)
T d2d1ya1         230 ASFITGAIL  238 (248)
T ss_dssp             GTTCCSCEE
T ss_pred             hcCCCCcEE
Confidence            999999964

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=100.00  E-value=7.3e-52  Score=353.02  Aligned_cols=232  Identities=28%  Similarity=0.356  Sum_probs=203.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|+.+++++..+++    +.++.++++|++|+++++++++++.+++
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----GDAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999999999999999999999888776665    2468999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      |++|++|||||.....++.+. +.++|++.+++|+.++++++++++|.|++++ |+||++||..+..+.++.++|++||+
T Consensus        78 g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKa  156 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETE-SVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKW  156 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCccEEEecCccccccccccc-cccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHH
Confidence            999999999999887776664 5589999999999999999999999987655 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC-CHHHHHHHHHHhhccCCc
Q 042560          203 AKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ-PTEECAKAIVNSACRGDR  280 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~evA~~i~~l~~~~~~  280 (287)
                      |+.+|+|+|+.|++++ ||||+|+||+++|+|..+......      ++ .....+..+++ +|||||++++||+|++++
T Consensus       157 al~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~~------~~-~~~~~pl~R~g~~PedvA~~v~fL~S~~a~  229 (254)
T d1hdca_         157 GVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQG------EG-NYPNTPMGRVGNEPGEIAGAVVKLLSDTSS  229 (254)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCS------TT-SCTTSTTSSCB-CHHHHHHHHHHHHSGGGT
T ss_pred             HHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHHH------HH-HHhCCCCCCCCCCHHHHHHHHHHHhchhhC
Confidence            9999999999999988 999999999999998764322111      11 11122334444 599999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+|||.+
T Consensus       230 ~itG~~i  236 (254)
T d1hdca_         230 YVTGAEL  236 (254)
T ss_dssp             TCCSCEE
T ss_pred             CCCCceE
Confidence            9999964

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=2.3e-51  Score=350.83  Aligned_cols=238  Identities=25%  Similarity=0.302  Sum_probs=205.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||++|||+++|++|+++|++|++++|++++++++.++++..+. ++.++++|++|+++++++++++.+++|++|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            7899999999999999999999999999999999999999999987664 699999999999999999999999999999


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCCCCCCChhhhhhHHHHH
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWLPPPRMSFYNASKAAKI  205 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~~~~~~~~Y~asKaal~  205 (287)
                      ++|||||+....++.+. +.++|++.+++|+.++++++|+++|.|.+++  |+||++||..+..+.|+.+.|+++|+|+.
T Consensus        81 ilVnnAG~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~  159 (255)
T d1gega_          81 VIVNNAGVAPSTPIESI-TPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVR  159 (255)
T ss_dssp             EEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHH
T ss_pred             EEEecccccccCcHHHh-hhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHH
Confidence            99999999887777664 5589999999999999999999999775543  78999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-CccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccCCc
Q 042560          206 ALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-KLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       206 ~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +|+|++|.|++++ ||||+|+||+++|+|.......... .....++..+.+.   +..++++|||||+.++||+|++++
T Consensus       160 ~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~  239 (255)
T d1gega_         160 GLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSD  239 (255)
T ss_dssp             HHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGT
T ss_pred             hhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhC
Confidence            9999999999998 9999999999999987653221110 0001122233333   444455799999999999999999


Q ss_pred             cccCCCC
Q 042560          281 YLTQPSW  287 (287)
Q Consensus       281 ~itG~~~  287 (287)
                      |+|||.+
T Consensus       240 ~itG~~i  246 (255)
T d1gega_         240 YMTGQSL  246 (255)
T ss_dssp             TCCSCEE
T ss_pred             CccCcEE
Confidence            9999964

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=100.00  E-value=2.4e-51  Score=349.97  Aligned_cols=234  Identities=24%  Similarity=0.269  Sum_probs=207.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|++++++++.+++    +.+..++++|++|+++++++++++.+++
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL----GERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999998888776    2468889999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      |++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++|+||++||..+..+.++..+|+++|+|
T Consensus        79 g~iDilVnnAG~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  157 (253)
T d1hxha_          79 GTLNVLVNNAGILLPGDMETG-RLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAA  157 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             CCCCeEEecccccCCCCcccC-CHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCccccccccchhHH
Confidence            999999999999887776664 5589999999999999999999999998878999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCC--C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC---CHHHHHHHHHHhhcc
Q 042560          204 KIALYETLRVEFGG--D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACR  277 (287)
Q Consensus       204 l~~~~~~la~e~~~--~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~evA~~i~~l~~~  277 (287)
                      +.+|+|+++.|+++  . ||||+|+||+++|+|.+......     ..++.........|++   +|||||++++||+|+
T Consensus       158 l~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~-----~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~  232 (253)
T d1hxha_         158 VSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKG-----VSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASD  232 (253)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTT-----CCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcch-----hhHHHHHhCccccccCCCCCHHHHHHHHHHHhCh
Confidence            99999999999975  4 99999999999999876543221     1234444444445555   699999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.+
T Consensus       233 ~s~~itG~~i  242 (253)
T d1hxha_         233 ESSVMSGSEL  242 (253)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhCCCcCcEE
Confidence            9999999964

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=100.00  E-value=3.5e-51  Score=347.22  Aligned_cols=229  Identities=27%  Similarity=0.402  Sum_probs=203.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +++++||||++|||+++|++|+++|++|++.+ |+.+.++++.++++..+ .++.++++|++|+++++++++++.+++|+
T Consensus         1 spV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG-GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT-CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999875 57777888888887765 47999999999999999999999999999


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +|++|||||.....++.+. +.++|++.+++|+.++++++|+++|.|+++ +|+||++||..+..+.++..+|+++|+|+
T Consensus        80 iDiLVnnAg~~~~~~~~~~-~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal  158 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRM-KKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCccccccccccccchhcc-chHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHH
Confidence            9999999999988877765 558999999999999999999999998765 49999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh-ccCC
Q 042560          205 IALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA-CRGD  279 (287)
Q Consensus       205 ~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~-~~~~  279 (287)
                      .+|+|+|+.|++++ ||||+|+||+++|+|..+.          .++..+......|   +++|||||++++||+ |+++
T Consensus       159 ~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~----------~~~~~~~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a  228 (244)
T d1edoa_         159 IGFSKTAAREGASRNINVNVVCPGFIASDMTAKL----------GEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAA  228 (244)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT----------CHHHHHHHHTSCTTCSCBCHHHHHHHHHHHHHCSGG
T ss_pred             HHChHHHHHHHhhhCcEEEEEecceeccHHHHHh----------hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHCCchh
Confidence            99999999999998 9999999999999987653          2344444445555   457999999999997 8999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+|||.+
T Consensus       229 ~~itG~~i  236 (244)
T d1edoa_         229 SYITGQAF  236 (244)
T ss_dssp             GGCCSCEE
T ss_pred             cCCcCCeE
Confidence            99999964

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=100.00  E-value=8.2e-51  Score=351.16  Aligned_cols=241  Identities=26%  Similarity=0.343  Sum_probs=202.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+|+||+++||||++|||+++|++|+++|++|++++|+.+++++..++..    .++..+.+|++++++++++++++.++
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG----DNVLGIVGDVRSLEDQKQAASRCVAR   76 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----CCeeEEecccccHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999998887766652    36899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCC----CCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDI----TKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      +|++|++|||||.............    +.|++++++|+.+++.++|+++|.|++++|++|+++|..+..+.++.+.|+
T Consensus        77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~~~~~~~Y~  156 (276)
T d1bdba_          77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYT  156 (276)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSTTSSCHHHH
T ss_pred             hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccCCCCCchHH
Confidence            9999999999998765443322222    248899999999999999999999988789999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh
Q 042560          199 ASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA  275 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~  275 (287)
                      ++|+|+.+|+|++|.|++++||||+|+||+|+|+|...............++..+......|   +++|||+|++++||+
T Consensus       157 asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~  236 (276)
T d1bdba_         157 AAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFA  236 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHc
Confidence            99999999999999999877999999999999999765443333222223344444444444   557999999999999


Q ss_pred             cc-CCccccCCCC
Q 042560          276 CR-GDRYLTQPSW  287 (287)
Q Consensus       276 ~~-~~~~itG~~~  287 (287)
                      |+ +++|+|||.+
T Consensus       237 S~~~a~~itG~~i  249 (276)
T d1bdba_         237 TRGDAAPATGALL  249 (276)
T ss_dssp             CHHHHTTCSSCEE
T ss_pred             CCcccCCeeCcEE
Confidence            85 6899999964

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-51  Score=348.75  Aligned_cols=244  Identities=24%  Similarity=0.317  Sum_probs=196.8

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+.  .++..+++|++|+++++++++++.+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999977642  3689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCC---CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCC-CCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFE---DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAA-GWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~-~~~~~~~~~~Y  197 (287)
                      ++|++|++|||||........   ...+.|+|++.+++|+.+++.++++++|.|++++|++|+++|.. +..+.|+...|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~~~~~~~~Y  161 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYY  161 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCCTTSHHH
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccccCCCchhh
Confidence            999999999999987543322   22345789999999999999999999999988888888877765 57799999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccch--HHHHhhhhcCCCCCCHHHHHHHHHHh
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVD--QEIRDVQISLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~evA~~i~~l  274 (287)
                      +++|+|+.+|+|+|+.|++++ ||||+|+||+++|+|.......+.......  .+......+..++++|||||++++||
T Consensus       162 ~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL  241 (264)
T d1spxa_         162 SIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFL  241 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence            999999999999999999998 999999999999999876543332221111  12223344555667899999999999


Q ss_pred             hccC-CccccCCCC
Q 042560          275 ACRG-DRYLTQPSW  287 (287)
Q Consensus       275 ~~~~-~~~itG~~~  287 (287)
                      +|++ ++|+|||.+
T Consensus       242 ~S~~~s~~itG~~i  255 (264)
T d1spxa_         242 ADRKTSSYIIGHQL  255 (264)
T ss_dssp             HCHHHHTTCCSCEE
T ss_pred             hCCcccCCccCceE
Confidence            9965 899999964

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=100.00  E-value=1.8e-50  Score=347.76  Aligned_cols=239  Identities=24%  Similarity=0.309  Sum_probs=203.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +|+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+  .+.++++|++|+++++++++++.+++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999999999999999988885533  47788999999999999999999999


Q ss_pred             CCccEEEEccccCCCCC-CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCC-hhhhhh
Q 042560          124 GRLDHLVTNAGVVPMCL-FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRM-SFYNAS  200 (287)
Q Consensus       124 ~~idvli~nag~~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~-~~Y~as  200 (287)
                      |++|++|||||.....+ .....+.++|++++++|+.++++++|+++|.|.+++ |++|+++|..+..+.++. ..|+++
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~as  160 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTAT  160 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHH
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccchh
Confidence            99999999999876543 233345578999999999999999999999997755 899999999998876654 589999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHH-hhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIR-DVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      |+|+.+|++++|.|++++ ||||+|+||+++|+|....+....   ...++.. +...+..++++|||||++++||+|++
T Consensus       161 Kaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~---~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~  237 (268)
T d2bgka1         161 KHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDS---SRVEELAHQAANLKGTLLRAEDVADAVAYLAGDE  237 (268)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCH---HHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGG
T ss_pred             HHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCH---HHHHHHHHhccccCCCCcCHHHHHHHHHHHhChh
Confidence            999999999999999998 999999999999999876543221   1111111 12223456778999999999999999


Q ss_pred             CccccCCCC
Q 042560          279 DRYLTQPSW  287 (287)
Q Consensus       279 ~~~itG~~~  287 (287)
                      ++|||||.+
T Consensus       238 s~~itGq~i  246 (268)
T d2bgka1         238 SKYVSGLNL  246 (268)
T ss_dssp             GTTCCSCEE
T ss_pred             hCCccCceE
Confidence            999999964

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.4e-51  Score=345.01  Aligned_cols=223  Identities=22%  Similarity=0.312  Sum_probs=190.0

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+++||+++||||++|||+++|++|+++|++|++++|+.+.++            ++..+++|++|+++++++++++.+
T Consensus         2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~~~~   69 (237)
T d1uzma1           2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK------------GLFGVEVDVTDSDAVDRAFTAVEE   69 (237)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT------------TSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc------------CceEEEEecCCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999876532            467899999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++|++|++|||||.....++.+. +.++|++++++|+.+++.++|+++|.|++++ |+||++||..+..+.++..+|++|
T Consensus        70 ~~g~iDiLVnnAG~~~~~~~~~~-~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  148 (237)
T d1uzma1          70 HQGPVEVLVSNAGLSADAFLMRM-TEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAAS  148 (237)
T ss_dssp             HHSSCSEEEEECSCCC-----CC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHH
T ss_pred             hcCCceEEEeeecccccccHhhC-CHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHH
Confidence            99999999999999887777665 4589999999999999999999999998776 799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+|+++|+|+++.|++++ ||||+|+||+++|+|.+..          +++..+..   .+..++++|||||++++||+|
T Consensus       149 Kaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~----------~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S  218 (237)
T d1uzma1         149 KAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL----------DERIQQGALQFIPAKRVGTPAEVAGVVSFLAS  218 (237)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS----------CHHHHHHHGGGCTTCSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc----------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999988 9999999999999987642          22333333   344555689999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+|||.+
T Consensus       219 ~~s~~itG~~i  229 (237)
T d1uzma1         219 EDASYISGAVI  229 (237)
T ss_dssp             GGGTTCCSCEE
T ss_pred             chhcCCcCCeE
Confidence            99999999964

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=100.00  E-value=5.4e-50  Score=342.56  Aligned_cols=239  Identities=27%  Similarity=0.335  Sum_probs=205.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+|+||+|+||||++|||+++|++|+++|++|++++|++++++++.++++..+. +++++++|++++++++++++++.++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999998877664 6889999999999999999999999


Q ss_pred             c-CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 F-GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~-~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      + +.+|++|||||.....++.+. +.++|++++++|+.+++.+.+++.|.|.+++ |+||++||..+..+.++...|+++
T Consensus        81 ~~g~idilinnag~~~~~~~~~~-~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~s  159 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDF-TEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSAS  159 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hCCCcEEEeccccccccCccccC-CHHHHhhhhhhccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence            8 689999999999988877765 5589999999999999999999999887654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~  276 (287)
                      |+|+++|++.+++|++++ ||||+|+||+++|+|.+.......    ..++..+.+....|   +++|||||++++||+|
T Consensus       160 K~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~~~~~~plgR~~~pediA~~v~fL~S  235 (258)
T d1ae1a_         160 KGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNP----HQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCF  235 (258)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-----------------CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhh----hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999998 999999999999999876543221    13444555544444   4579999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+|||.+
T Consensus       236 ~~s~~itG~~i  246 (258)
T d1ae1a_         236 PAASYITGQII  246 (258)
T ss_dssp             GGGTTCCSCEE
T ss_pred             hhhCCCcCcEE
Confidence            99999999964

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.5e-50  Score=347.53  Aligned_cols=243  Identities=25%  Similarity=0.329  Sum_probs=204.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+  ..++..+++|++|+++++++++++.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999997754  23689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCC---CCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcC-CCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDY---TDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVAS-AAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS-~~~~~~~~~~~~Y  197 (287)
                      ++|++|++|||||.....++...   .+.++|++++++|+.+++.++++++|.|++++|++|+++| .++..+.++..+|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~~~~~~~Y  161 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYY  161 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSCCCSSHHH
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccCCCCcchh
Confidence            99999999999999876554322   2334699999999999999999999999887777777766 5678899999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---CCHHHHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---QPTEECAKAIVN  273 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~evA~~i~~  273 (287)
                      +++|+|+.+|+|+||.|++++ ||||+|+||+|+|+|.......+... ...++..+......|+   ++|||||++++|
T Consensus       162 ~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~PlgR~g~pediA~~v~f  240 (272)
T d1xkqa_         162 AIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQAS-QKFYNFMASHKECIPIGAAGKPEHIANIILF  240 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHH-HHHHHHHHHCTTTCTTSSCBCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHH-HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHH
Confidence            999999999999999999998 99999999999999986543221100 1112233333344454   579999999999


Q ss_pred             hhccC-CccccCCCC
Q 042560          274 SACRG-DRYLTQPSW  287 (287)
Q Consensus       274 l~~~~-~~~itG~~~  287 (287)
                      |+|++ ++|+|||.+
T Consensus       241 L~S~~as~~iTG~~i  255 (272)
T d1xkqa_         241 LADRNLSFYILGQSI  255 (272)
T ss_dssp             HHCHHHHTTCCSCEE
T ss_pred             HhCcchhCCccCeEE
Confidence            99976 579999964

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-50  Score=341.71  Aligned_cols=227  Identities=19%  Similarity=0.243  Sum_probs=197.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.     .+..+.+|++|++++++++    ++
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~----~~   71 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----GIEPVCVDLGDWDATEKAL----GG   71 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHH----TT
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHH----HH
Confidence            67999999999999999999999999999999999999998887776542     3778899999999887655    56


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHh-c-CCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLK-Q-TKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~-~-~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +|++|++|||||.....++.+. +.++|++.+++|+.++++++|.++|.|. + .+|+||+++|..+..+.|+...|+++
T Consensus        72 ~g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~as  150 (242)
T d1cyda_          72 IGPVDLLVNNAALVIMQPFLEV-TKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSST  150 (242)
T ss_dssp             CCCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             cCCCeEEEECCccccchhHHHH-HHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccch
Confidence            7999999999999888777664 5589999999999999999999999754 3 34899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+|+.+|+|+++.|++++ ||||+|+||+++|+|.+....        +++..+...   +..++++|||||++++||+|
T Consensus       151 Kaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~--------~~~~~~~~~~~~pl~R~~~peeva~~v~fL~S  222 (242)
T d1cyda_         151 KGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA--------DPEFARKLKERHPLRKFAEVEDVVNSILFLLS  222 (242)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC--------CHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcC--------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999998 999999999999998765432        233343333   44455679999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+|||.+
T Consensus       223 ~~s~~itG~~i  233 (242)
T d1cyda_         223 DRSASTSGGGI  233 (242)
T ss_dssp             GGGTTCCSSEE
T ss_pred             chhcCcCCceE
Confidence            99999999964

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.9e-50  Score=346.53  Aligned_cols=243  Identities=25%  Similarity=0.284  Sum_probs=204.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC--CeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS--PFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++...+.  .++..+++|++|+++++++++++.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999977643  3689999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCC-CCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFE-DYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      ++|++|++|||||.....+.. ...+.++|++.+++|+.+++.++|+++|.|++++ |+|+++||..+..+.+++.+|++
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~a  160 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYAC  160 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHH
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCCceehh
Confidence            999999999999987554332 2234477999999999999999999999998765 67777888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~  275 (287)
                      +|+|+.+|+|++|.|++++ ||||+|+||+++|++.......+... ...++..+......|   +++|||||++++||+
T Consensus       161 sKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~-~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~  239 (274)
T d1xhla_         161 AKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETAS-DKLYSFIGSRKECIPVGHCGKPEEIANIIVFLA  239 (274)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHH-HHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhh-HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHc
Confidence            9999999999999999998 99999999999999876543221100 001222333333344   557999999999999


Q ss_pred             cc-CCccccCCCC
Q 042560          276 CR-GDRYLTQPSW  287 (287)
Q Consensus       276 ~~-~~~~itG~~~  287 (287)
                      |+ .++|+|||.+
T Consensus       240 S~d~s~~itG~~i  252 (274)
T d1xhla_         240 DRNLSSYIIGQSI  252 (274)
T ss_dssp             CHHHHTTCCSCEE
T ss_pred             CCccccCccCcEE
Confidence            95 5899999964

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=100.00  E-value=6.7e-50  Score=342.73  Aligned_cols=235  Identities=24%  Similarity=0.304  Sum_probs=204.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++..+++|++|+++++++++++.+
T Consensus         4 ~m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           4 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999998888887655455799999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCC-------CCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWL-------PPP  192 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~-------~~~  192 (287)
                      ++|++|++|||||.....++.+. +.++|++.+++|+.+++++++.++|.|.++  +|+|++++|.....       +.+
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~  162 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATEL-THEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSL  162 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEEC
T ss_pred             HhCCCcEecccccccccCCHHHh-ccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCc
Confidence            99999999999999887777664 558999999999999999999999988433  36778877766543       346


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHH
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECA  268 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA  268 (287)
                      +...|+++|+|+.+|+|.++.|++++ ||||+|+||+++|++....          +++..+......|   +++|||||
T Consensus       163 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~----------~~~~~~~~~~~~pl~R~g~pedvA  232 (260)
T d1h5qa_         163 TQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----------DKKIRDHQASNIPLNRFAQPEEMT  232 (260)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----------CHHHHHHHHHTCTTSSCBCGGGGH
T ss_pred             cccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc----------CHHHHHHHHhcCCCCCCcCHHHHH
Confidence            78899999999999999999999988 9999999999999987643          2344444444445   55799999


Q ss_pred             HHHHHhhccCCccccCCCC
Q 042560          269 KAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~~~~itG~~~  287 (287)
                      ++++||+|++++|+|||.+
T Consensus       233 ~~v~fL~S~~s~~itG~~i  251 (260)
T d1h5qa_         233 GQAILLLSDHATYMTGGEY  251 (260)
T ss_dssp             HHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHhcchhCCCcCceE
Confidence            9999999999999999964

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-49  Score=338.20  Aligned_cols=227  Identities=21%  Similarity=0.265  Sum_probs=197.0

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +.|+||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.     .+..+.+|++|++++++++    ++
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~----~~   73 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----GIEPVCVDLGDWEATERAL----GS   73 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----TCEEEECCTTCHHHHHHHH----TT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----CCeEEEEeCCCHHHHHHHH----HH
Confidence            56899999999999999999999999999999999999999888776652     3778899999999987665    56


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHH-hc-CCCEEEEEcCCCCCCCCCCChhhhhh
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQ-TKGKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l-~~-~~g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      +|++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.| ++ ++|+||++||..+..+.|+...|+++
T Consensus        74 ~g~iDilVnnAg~~~~~~~~~~-~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~as  152 (244)
T d1pr9a_          74 VGPVDLLVNNAAVALLQPFLEV-TKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCST  152 (244)
T ss_dssp             CCCCCEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred             hCCceEEEeccccccccchhhh-hHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhh
Confidence            7999999999999888777765 558999999999999999999999965 43 34899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~  276 (287)
                      |+|+.+|+|++|.|++++ ||||+|+||+++|++.+....        +++..+......|   +++|||||+.++||+|
T Consensus       153 Kaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~--------~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S  224 (244)
T d1pr9a_         153 KGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS--------DPHKAKTMLNRIPLGKFAEVEHVVNAILFLLS  224 (244)
T ss_dssp             HHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSC--------SHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhcc--------ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999988 999999999999998765432        1233333444444   5579999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      +.++|+|||.+
T Consensus       225 ~~a~~itG~~i  235 (244)
T d1pr9a_         225 DRSGMTTGSTL  235 (244)
T ss_dssp             GGGTTCCSCEE
T ss_pred             chhCCcCCcEE
Confidence            99999999964

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=341.57  Aligned_cols=238  Identities=20%  Similarity=0.287  Sum_probs=206.5

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc----CCCeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM----GSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      +-.|+||+|+||||++|||+++|++|+++|++|++++|+.+++++..+++...    .+.++..+++|++|+++++++++
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   86 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   86 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999998888653    24579999999999999999999


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChh
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~  196 (287)
                      ++.+++|++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|.+++ |+||++|| .+..+.|+...
T Consensus        87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss-~~~~~~~~~~~  164 (297)
T d1yxma1          87 STLDTFGKINFLVNNGGGQFLSPAEHI-SSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIV-PTKAGFPLAVH  164 (297)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC-CCTTCCTTCHH
T ss_pred             HHHHHhCCeEEEEeeccccccCchhhh-hhhhhhhhhcccccchhhHHHHHHHhhccccccccccccc-ccccccccccc
Confidence            999999999999999999887777765 5589999999999999999999999987655 78888765 55667899999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcC---CCCCCHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISL---LPVQPTEECAKAIV  272 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~evA~~i~  272 (287)
                      |+++|+|+.+|+|++|.|++++ ||||+|+||+|+|++........      .++..+.....   .++++|||||++++
T Consensus       165 Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~------~~~~~~~~~~~~plgR~g~pedvA~~v~  238 (297)
T d1yxma1         165 SGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSW------GQSFFEGSFQKIPAKRIGVPEEVSSVVC  238 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGG------GGGGGTTGGGGSTTSSCBCTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhcccc------CHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence            9999999999999999999988 99999999999999876543222      23344444444   44557999999999


Q ss_pred             HhhccCCccccCCCC
Q 042560          273 NSACRGDRYLTQPSW  287 (287)
Q Consensus       273 ~l~~~~~~~itG~~~  287 (287)
                      ||+|++++|+|||.+
T Consensus       239 fL~Sd~s~~iTG~~i  253 (297)
T d1yxma1         239 FLLSPAASFITGQSV  253 (297)
T ss_dssp             HHHSGGGTTCCSCEE
T ss_pred             HHhCchhcCcCCcEE
Confidence            999999999999964

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=2.5e-49  Score=337.55  Aligned_cols=229  Identities=18%  Similarity=0.162  Sum_probs=196.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ||+||||++|||+++|++|+++|++|++++|+.+.++++.+....       ...+|++|+++++++++++.+++|++|+
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------~~~~dv~~~~~~~~~~~~~~~~~G~iDi   74 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-------YPQLKPMSEQEPAELIEAVTSAYGQVDV   74 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH-------CTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc-------EEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence            799999999999999999999999999999998888776554332       2358999999999999999999999999


Q ss_pred             EEEccccCCC-CCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHH
Q 042560          129 LVTNAGVVPM-CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIA  206 (287)
Q Consensus       129 li~nag~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~  206 (287)
                      +|||||.... .++.+ .+.++|++.+++|+.++++++|+++|.|++++ |+||++||..+..+.++...|+++|+|+.+
T Consensus        75 LVnNAg~~~~~~~~~~-~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~  153 (252)
T d1zmta1          75 LVSNDIFAPEFQPIDK-YAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACT  153 (252)
T ss_dssp             EEEECCCCCCCCCGGG-SCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHH
T ss_pred             EEECCcCCCCCCChhh-CCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHHH
Confidence            9999998755 44444 45588999999999999999999999997765 999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhh---hhcCCCCCCHHHHHHHHHHhhccCCccc
Q 042560          207 LYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDV---QISLLPVQPTEECAKAIVNSACRGDRYL  282 (287)
Q Consensus       207 ~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~evA~~i~~l~~~~~~~i  282 (287)
                      |+|+++.|++++ ||||+|+||+++|++....+..+....  .++..+.   ..+..++++|||||++++||+|++++|+
T Consensus       154 lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~--~~e~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~i  231 (252)
T d1zmta1         154 LANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKT--NPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYL  231 (252)
T ss_dssp             HHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTT--CHHHHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccC--CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCC
Confidence            999999999998 999999999999999876543322111  2333333   3344556689999999999999999999


Q ss_pred             cCCCC
Q 042560          283 TQPSW  287 (287)
Q Consensus       283 tG~~~  287 (287)
                      |||.+
T Consensus       232 TG~~i  236 (252)
T d1zmta1         232 TGQVF  236 (252)
T ss_dssp             TTCEE
T ss_pred             cCCeE
Confidence            99964

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=100.00  E-value=1.5e-48  Score=330.19  Aligned_cols=220  Identities=27%  Similarity=0.363  Sum_probs=200.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCe-------EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRAR-------LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~-------vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ++++||||++|||+++|++|+++|++       |++++|+.++++++.++++..+ .++..+++|++|+++++++++++.
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-ALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHH
Confidence            46899999999999999999999997       8999999999999999988765 479999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +++|++|++|||||.....++.+. +.++|++++++|+.+++.++|+++|.|++++ |+||++||..+..+.|+++.|++
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~a  159 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDL-TEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCM  159 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHH
T ss_pred             HHcCCcceeecccccccCCccccC-CHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHH
Confidence            999999999999999988877765 5589999999999999999999999997755 89999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      +|+|+.+|+++|+.|++++ ||||+|+||+++|+|..+...          +      ...++.+|||||+.++++++++
T Consensus       160 sK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~----------~------~~~~~~~PedvA~~v~~l~s~~  223 (240)
T d2bd0a1         160 SKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD----------E------MQALMMMPEDIAAPVVQAYLQP  223 (240)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS----------T------TGGGSBCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCH----------h------hHhcCCCHHHHHHHHHHHHcCC
Confidence            9999999999999999998 999999999999999765321          1      1123568999999999999999


Q ss_pred             CccccCC
Q 042560          279 DRYLTQP  285 (287)
Q Consensus       279 ~~~itG~  285 (287)
                      +++++|+
T Consensus       224 ~~~~~~~  230 (240)
T d2bd0a1         224 SRTVVEE  230 (240)
T ss_dssp             TTEEEEE
T ss_pred             ccCccCC
Confidence            9999886

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-48  Score=328.82  Aligned_cols=236  Identities=23%  Similarity=0.264  Sum_probs=205.4

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .+++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+ ..++.++++|++++++++++++++.+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            34899999999999999999999999999999999999999999999998765 45799999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC---CCEEEEEcCCCCCCC--CCCChh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT---KGKIIVVASAAGWLP--PPRMSF  196 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~---~g~iv~isS~~~~~~--~~~~~~  196 (287)
                      ++|++|++|||||.....++.+. +.++|++.+++|+.+++++.++++|.|++.   +|+||++||..+...  .++...
T Consensus        86 ~~g~iD~lVnnAg~~~~~~~~~~-~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~  164 (257)
T d1xg5a_          86 QHSGVDICINNAGLARPDTLLSG-STSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHF  164 (257)
T ss_dssp             HHCCCSEEEECCCCCCCCCTTTC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHH
T ss_pred             hcCCCCEEEecccccCCCccccc-cHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHH
Confidence            99999999999999988877775 458999999999999999999999988653   389999999998754  456778


Q ss_pred             hhhhHHHHHHHHHHHHHHh--CCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHH
Q 042560          197 YNASKAAKIALYETLRVEF--GGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVN  273 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~--~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~  273 (287)
                      |+++|+|+.+|+|+|+.|+  ++. ||||+|+||+++|++.......       ..+......+..++++|||||++++|
T Consensus       165 Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~-------~~~~~~~~~~~~r~~~pedvA~~v~f  237 (257)
T d1xg5a_         165 YSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDK-------DPEKAAATYEQMKCLKPEDVAEAVIY  237 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTT-------CHHHHHHHHC---CBCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChh-------hHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence            9999999999999999998  566 9999999999999987643211       12334445567778899999999999


Q ss_pred             hhccCCccccCCC
Q 042560          274 SACRGDRYLTQPS  286 (287)
Q Consensus       274 l~~~~~~~itG~~  286 (287)
                      |+|++++|+|||.
T Consensus       238 L~s~~a~~itG~i  250 (257)
T d1xg5a_         238 VLSTPAHIQIGDI  250 (257)
T ss_dssp             HHHSCTTEEEEEE
T ss_pred             HhCChhcCeECCE
Confidence            9999999999973

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-48  Score=332.00  Aligned_cols=232  Identities=24%  Similarity=0.321  Sum_probs=199.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +.||+++||||++|||+++|++|+++|++|++++|+.+++++..+++... ++.++.++++|++|+++++++++++.+++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999998888654 34579999999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCChhhhh
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      |++|++|||||...         .++|++.+++|+.+++.+++.++|.|.++    +|+||++||..+..|.|+.++|++
T Consensus        81 G~iDilVnnAg~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~a  151 (254)
T d2gdza1          81 GRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCA  151 (254)
T ss_dssp             SCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHH
T ss_pred             CCcCeecccccccc---------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHH
Confidence            99999999999842         36788999999999999999999999764    278999999999999999999999


Q ss_pred             hHHHHHHHHHH--HHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc-cchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          200 SKAAKIALYET--LRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL-EVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       200 sKaal~~~~~~--la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      ||+|+.+|+|+  |+.|++++ ||||+|+||+|+|+|.+.....+.... ....+......+..++++|||||++++||+
T Consensus       152 sKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~  231 (254)
T d2gdza1         152 SKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLI  231 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence            99999999997  78899988 999999999999999876543221111 111233344455667889999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |++  ++|||.+
T Consensus       232 s~~--~itG~~i  241 (254)
T d2gdza1         232 EDD--ALNGAIM  241 (254)
T ss_dssp             HCT--TCSSCEE
T ss_pred             cCC--CCCCCEE
Confidence            974  5999863

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.6e-48  Score=332.19  Aligned_cols=235  Identities=22%  Similarity=0.179  Sum_probs=192.4

Q ss_pred             CCCCCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ...+|+||+++||||+|  |||+++|++|+++|++|++++|+++..++..+.... ++ +...+++|++|++++++++++
T Consensus         2 ~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           2 LTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA-LG-GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             EEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-TT-CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc-cC-cccccccccCCHHHHHHHHHH
Confidence            45689999999999987  999999999999999999999987665554443333 32 477899999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCC----CCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          119 TMEHFGRLDHLVTNAGVVPMC----LFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~----~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      +.+++|++|++|||||.....    .+.+ .+.++|++.+++|+.+++.+++++.|.|++ +|+||++||..+..+.|++
T Consensus        80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~-~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~-~G~Iv~isS~~~~~~~~~~  157 (256)
T d1ulua_          80 VKEAFGGLDYLVHAIAFAPREAMEGRYID-TRRQDWLLALEVSAYSLVAVARRAEPLLRE-GGGIVTLTYYASEKVVPKY  157 (256)
T ss_dssp             HHHHHSSEEEEEECCCCCCHHHHSSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHTTTEEE-EEEEEEEECGGGTSBCTTC
T ss_pred             HHHhcCCceEEEeccccccccccccchhh-hhhhhhhHhhhhhHHHHHHHHHHHHHHhcc-CCEEEEEeehHhcCCCCCc
Confidence            999999999999999987532    2223 234678899999999999999999998875 6899999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhh---hcCCCCCCHHHHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQ---ISLLPVQPTEECAKA  270 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~evA~~  270 (287)
                      ..|+++|+|+++|+|++|.|++++ ||||+|+||+++|++......        .++..+..   .+..++++|||||++
T Consensus       158 ~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~--------~~~~~~~~~~~~pl~R~~~pedvA~~  229 (256)
T d1ulua_         158 NVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG--------FTKMYDRVAQTAPLRRNITQEEVGNL  229 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------CHHHHHHHHHHSTTSSCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhh--------hHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence            999999999999999999999998 999999999999998764321        23333433   344455689999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      ++||+|++++|+|||.+
T Consensus       230 v~fL~S~~s~~itG~~i  246 (256)
T d1ulua_         230 GLFLLSPLASGITGEVV  246 (256)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHhCchhCCccCCeE
Confidence            99999999999999964

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=4.8e-48  Score=330.99  Aligned_cols=241  Identities=23%  Similarity=0.344  Sum_probs=203.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEe-CChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVA-RRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .|+||+||||||++|||+++|++|+++|++|++++ |+.+.++++.++++..+. +++.+++|++|+++++++++++.++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999875 456667888888877664 6899999999999999999999999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCC-CCCCCCChhhhhhH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAG-WLPPPRMSFYNASK  201 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~-~~~~~~~~~Y~asK  201 (287)
                      +|++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++ +|++++++|..+ ..+.+++..|+++|
T Consensus        82 ~g~idilinnag~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-~g~~iii~s~~~~~~~~~~~~~Y~asK  159 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEV-TQELFDKVFNLNTRGQFFVAQQGLKHCRR-GGRIILTSSIAAVMTGIPNHALYAGSK  159 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHEEE-EEEEEEECCGGGTCCSCCSCHHHHHHH
T ss_pred             cCCCcEEEeccccccccccccc-hHHHHHHHHhhccceeeeehhhhhhhhhc-CCcccccccccccccCCCCchhHHHHH
Confidence            9999999999999887776664 45899999999999999999999999976 467777766655 44789999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcC---CCccchHHHHhhhhcCC---CCCCHHHHHHHHHHh
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKN---GKLEVDQEIRDVQISLL---PVQPTEECAKAIVNS  274 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~p~evA~~i~~l  274 (287)
                      +|+.+|+|.|++|++++ ||||+|+||+++|+|.+.......   .....+++..+......   ++++|+|||++++||
T Consensus       160 ~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL  239 (259)
T d1ja9a_         160 AAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSAL  239 (259)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Confidence            99999999999999998 999999999999998765432221   11222344445444444   455799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      +|+.++|+||+.+
T Consensus       240 ~S~~a~~itG~~i  252 (259)
T d1ja9a_         240 CQEESEWINGQVI  252 (259)
T ss_dssp             HSGGGTTCCSCEE
T ss_pred             hCchhcCCcCceE
Confidence            9999999999964

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=100.00  E-value=6.2e-48  Score=326.65  Aligned_cols=227  Identities=29%  Similarity=0.381  Sum_probs=193.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||+|+||||++|||+++|++|+++|++|++++|+.+++++..+++   + .++.++++|++++++++++++++.+++
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---E-AEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---C-SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C-CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999998877655543   3 468899999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      |++|++|||||.....++.+. +.++|++++++|+.+++.++|.++|.|++ ++.++++||.+ ..+.|++..|+++|+|
T Consensus        78 g~iDiLinnAg~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~k~~~~~~~~-~~~i~~~ss~a-~~~~~~~~~Y~~sK~a  154 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNL-PLEAWEKVLRVNLTGSFLVARKAGEVLEE-GGSLVLTGSVA-GLGAFGLAHYAAGKLG  154 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TCEEEEECCCT-TCCHHHHHHHHHCSSH
T ss_pred             CCccEeccccccccccchhhh-hcccccccccccccccccccccccccccc-ccceeeccccc-cccccCccccchhhHH
Confidence            999999999999887777665 55899999999999999999999998865 45666555554 4566889999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~~  279 (287)
                      +++|+++|++|++++ ||||+|+||+++|+|....          +++..+......|   +++|||||++++||+|+.+
T Consensus       155 l~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~----------~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~S~~s  224 (241)
T d2a4ka1         155 VVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL----------PPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEES  224 (241)
T ss_dssp             HHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS----------CHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhh----------hHhHHHHHHhCCCCCCCcCHHHHHHHHHHHhcchh
Confidence            999999999999998 9999999999999987642          2344444444444   5579999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+||+.+
T Consensus       225 ~~itG~~i  232 (241)
T d2a4ka1         225 AYITGQAL  232 (241)
T ss_dssp             TTCCSCEE
T ss_pred             CCCcCceE
Confidence            99999864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.8e-47  Score=321.37  Aligned_cols=217  Identities=24%  Similarity=0.285  Sum_probs=186.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |+||++|||||++|||+++|++|+++|++|++++|+.+.+++.          ...++.+|+++.      ++.+.++++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~----------~~~~~~~Dv~~~------~~~~~~~~g   65 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS----------GHRYVVCDLRKD------LDLLFEKVK   65 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT----------CSEEEECCTTTC------HHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc----------CCcEEEcchHHH------HHHHHHHhC
Confidence            7899999999999999999999999999999999998765432          234677999864      345667889


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      ++|++|||||.....++.+. +.++|++.+++|+.+++.++++++|.|++++ |+||+++|..+..+.++...|+++|+|
T Consensus        66 ~iD~lVnnAG~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaa  144 (234)
T d1o5ia_          66 EVDILVLNAGGPKAGFFDEL-TNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMA  144 (234)
T ss_dssp             CCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHH
T ss_pred             CCcEEEecccccCCcchhhh-hhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHH
Confidence            99999999998877766664 5589999999999999999999999998655 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +.+|+|++|.|++++ ||||+|+||+++|++.....         .++..+...   +..++++|||||++++||+|+++
T Consensus       145 l~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~---------~~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s  215 (234)
T d1o5ia_         145 LTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL---------SEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKA  215 (234)
T ss_dssp             HHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS---------CHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc---------CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhh
Confidence            999999999999998 99999999999999876532         123333333   44445579999999999999999


Q ss_pred             ccccCCCC
Q 042560          280 RYLTQPSW  287 (287)
Q Consensus       280 ~~itG~~~  287 (287)
                      +|+|||.+
T Consensus       216 ~~itG~~i  223 (234)
T d1o5ia_         216 SYLTGQTI  223 (234)
T ss_dssp             TTCCSCEE
T ss_pred             cCCcCcEE
Confidence            99999964

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=3.8e-47  Score=327.66  Aligned_cols=245  Identities=24%  Similarity=0.335  Sum_probs=206.1

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ..+.+|+||+++||||++|||+++|++|+++|++|++++|+ .+.++++.++++..+. ++.++++|++|++++++++++
T Consensus        11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          11 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHH
Confidence            35577999999999999999999999999999999999887 5567777888877664 699999999999999999999


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-CCCCCChhh
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-LPPPRMSFY  197 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-~~~~~~~~Y  197 (287)
                      +.+++|++|++|||+|.....++.+. +.++|++.+++|+.+++.+++.++|.|.+ +|++++++|..+. .+.+++..|
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~-~~~~~~~~~~~nl~~~~~~~~~~~~~m~~-~g~~i~i~s~~~~~~~~~~~~~Y  167 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDV-TPEEFDRVFTINTRGQFFVAREAYKHLEI-GGRLILMGSITGQAKAVPKHAVY  167 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHSCT-TCEEEEECCGGGTCSSCSSCHHH
T ss_pred             HHHHhCCCCccccccccchhhhhhhh-hhhHHHHHhhhccceeeeecccccccccc-ccccccccccccccccccchhhH
Confidence            99999999999999999887777665 44889999999999999999999999976 5788888887654 467788999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCC--ccchHHHHh----hhhcCCCCCCHHHHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGK--LEVDQEIRD----VQISLLPVQPTEECAKA  270 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~p~evA~~  270 (287)
                      +++|+|+++|+|.+|+|++++ ||||+|+||+++|++.+.........  ....++..+    ...+..++++|||||++
T Consensus       168 ~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~  247 (272)
T d1g0oa_         168 SGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARV  247 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHH
Confidence            999999999999999999988 99999999999999987654332211  111222222    22334455579999999


Q ss_pred             HHHhhccCCccccCCCC
Q 042560          271 IVNSACRGDRYLTQPSW  287 (287)
Q Consensus       271 i~~l~~~~~~~itG~~~  287 (287)
                      ++||+|+.++|+||+.+
T Consensus       248 v~fL~s~~s~~itG~~i  264 (272)
T d1g0oa_         248 VCFLASNDGGWVTGKVI  264 (272)
T ss_dssp             HHHHHSGGGTTCCSCEE
T ss_pred             HHHHhCchhcCccCceE
Confidence            99999999999999864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=100.00  E-value=3.1e-46  Score=325.41  Aligned_cols=239  Identities=18%  Similarity=0.167  Sum_probs=202.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +..+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++....+.++..+.+|++++++++++++.+.
T Consensus        19 ~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~   98 (294)
T d1w6ua_          19 PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI   98 (294)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh
Confidence            34599999999999999999999999999999999999999999999888876555678999999999999999999999


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCCCCChhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      ++++++|++|||||.....++... +.+++.+.+.+|..+.+.+.+...+.+...  ++.+++++|..+..+.++..+|+
T Consensus        99 ~~~g~iDilvnnAg~~~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~Ys  177 (294)
T d1w6ua_          99 KVAGHPNIVINNAAGNFISPTERL-SPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSA  177 (294)
T ss_dssp             HHTCSCSEEEECCCCCCCSCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHH
T ss_pred             hhccccchhhhhhhhccccccccc-hhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccchHH
Confidence            999999999999999887766664 447888999999999999988888766443  36888899999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh---cCCCCCCHHHHHHHHHHh
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI---SLLPVQPTEECAKAIVNS  274 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~evA~~i~~l  274 (287)
                      ++|+|+.+|+|.+|+|++++ ||||+|+||+++|++.......       .++..+...   +..++++|||||++++||
T Consensus       178 asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~-------~~~~~~~~~~~~pl~R~~~pediA~~v~fL  250 (294)
T d1w6ua_         178 SAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDP-------TGTFEKEMIGRIPCGRLGTVEELANLAAFL  250 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCT-------TSHHHHHHHTTCTTSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCC-------cHHHHHHHhhcCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999998 9999999999999997654321       123333333   444555799999999999


Q ss_pred             hccCCccccCCCC
Q 042560          275 ACRGDRYLTQPSW  287 (287)
Q Consensus       275 ~~~~~~~itG~~~  287 (287)
                      ++++++|+||+.+
T Consensus       251 ~sd~s~~itG~~i  263 (294)
T d1w6ua_         251 CSDYASWINGAVI  263 (294)
T ss_dssp             TSGGGTTCCSCEE
T ss_pred             hCchhcCCCCcEE
Confidence            9999999999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-46  Score=314.00  Aligned_cols=222  Identities=27%  Similarity=0.380  Sum_probs=198.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++++||+++||||++|||+++|++|+++|++|++++|+.++++++.++++..+ .++..+.+|++|+++++++++++.+
T Consensus         2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999998765 4799999999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNAS  200 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~as  200 (287)
                      ++|++|++|||||......+.+. +.+.|++++++|+.++++++++++|.|.+++ |+||++||..+..+.|++++|++|
T Consensus        81 ~~g~idilinnag~~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~as  159 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYTSDLFAT-QDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSS  159 (244)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGG-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHH
T ss_pred             HcCCCceeEeecccccccccccc-chhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHH
Confidence            99999999999999988877664 4588999999999999999999999997765 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC---C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          201 KAAKIALYETLRVEFGG---D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       201 Kaal~~~~~~la~e~~~---~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      |+|+.+|+++|+.|+++   + |+||+|+||+|+|+|.+...                 .+..+..+|||+|+.++..+.
T Consensus       160 Kaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-----------------~~~~~~~~pe~va~~i~~~~~  222 (244)
T d1yb1a_         160 KFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-----------------TSLGPTLEPEEVVNRLMHGIL  222 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-----------------HHHCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-----------------ccccCCCCHHHHHHHHHHHHh
Confidence            99999999999999753   4 99999999999999876421                 123356689999999998877


Q ss_pred             cCCccc
Q 042560          277 RGDRYL  282 (287)
Q Consensus       277 ~~~~~i  282 (287)
                      .+.+.+
T Consensus       223 ~~~~~i  228 (244)
T d1yb1a_         223 TEQKMI  228 (244)
T ss_dssp             TTCSEE
T ss_pred             cCCcEE
Confidence            665544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-46  Score=318.34  Aligned_cols=241  Identities=17%  Similarity=0.188  Sum_probs=201.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHH---cCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYAR---RRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~---~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      ..|+||+++||||++|||+++|++|++   +|++|++++|+.++++++.+++... ++.++..+++|+++++++++++++
T Consensus         2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~   81 (259)
T d1oaaa_           2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence            468999999999999999999999996   7999999999999999999998765 355899999999999999999999


Q ss_pred             HHHh----cCCccEEEEccccCCCCC--CCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC---CEEEEEcCCCCCC
Q 042560          119 TMEH----FGRLDHLVTNAGVVPMCL--FEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK---GKIIVVASAAGWL  189 (287)
Q Consensus       119 ~~~~----~~~idvli~nag~~~~~~--~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~---g~iv~isS~~~~~  189 (287)
                      +.+.    .+.+|++|||||.....+  ..+..++++|++++++|+.+++++++.++|.|++++   |+||++||..+..
T Consensus        82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence            8773    457999999999864322  223345578999999999999999999999998764   7999999999999


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          190 PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       190 ~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      |.++++.|++||+|+++|+++|+.| .+.||||+|+||+|+|+|.+........  ....+......+..++++|+|+|+
T Consensus       162 ~~~~~~~Y~asKaal~~lt~~la~e-~~gIrVn~v~PG~i~T~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~p~evA~  238 (259)
T d1oaaa_         162 PYKGWGLYCAGKAARDMLYQVLAAE-EPSVRVLSYAPGPLDNDMQQLARETSKD--PELRSKLQKLKSDGALVDCGTSAQ  238 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHH-CTTEEEEEEECCSBSSHHHHHHHHHCSC--HHHHHHHHHHHHTTCSBCHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEcCCCCCHHHHHhhhcCCC--HHHHHHHHhcCCCCCCCCHHHHHH
Confidence            9999999999999999999999999 3449999999999999987643322110  011122233345566789999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      .+++|+++ ++|+||+.|
T Consensus       239 ~i~~ll~~-~s~~TG~~i  255 (259)
T d1oaaa_         239 KLLGLLQK-DTFQSGAHV  255 (259)
T ss_dssp             HHHHHHHH-CCSCTTEEE
T ss_pred             HHHHHhhh-ccCCCCCeE
Confidence            99999987 479999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-46  Score=325.67  Aligned_cols=224  Identities=23%  Similarity=0.264  Sum_probs=195.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC---------hhHHHHHHHHHHhcCCCeeEEEeecCCCHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR---------ERQLREVADQAELMGSPFALAIPADVSKVED  111 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~  111 (287)
                      ++|+++||+++||||++|||+++|++|+++|++|++++|+         .+.+++..+++...+    ....+|++|.++
T Consensus         1 sPm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~   76 (302)
T d1gz6a_           1 SPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG----GKAVANYDSVEA   76 (302)
T ss_dssp             CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT----CEEEEECCCGGG
T ss_pred             CCcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc----cccccccchHHH
Confidence            4789999999999999999999999999999999998664         456677777776543    346789999999


Q ss_pred             HHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC
Q 042560          112 CKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP  190 (287)
Q Consensus       112 v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~  190 (287)
                      ++++++++.+++|++|+||||||+....++.+. +.++|++++++|+.+++.++++++|.|++++ |+||++||..+..+
T Consensus        77 ~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~-~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~  155 (302)
T d1gz6a_          77 GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG  155 (302)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCccCCCCChhhC-CHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCC
Confidence            999999999999999999999999988877775 5589999999999999999999999998755 89999999999999


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHH
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAK  269 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~  269 (287)
                      .++...|++||+|+.+|+++++.|++++ ||||+|+||++.|++....          +++..+       ..+|||||+
T Consensus       156 ~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~----------~~~~~~-------~~~PedvA~  218 (302)
T d1gz6a_         156 NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM----------PEDLVE-------ALKPEYVAP  218 (302)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS----------CHHHHH-------HSCGGGTHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC----------cHhhHh-------cCCHHHHHH
Confidence            9999999999999999999999999988 9999999999988764421          122222       246999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      +++||+|+.+ ++||+.+
T Consensus       219 ~v~fL~S~~a-~itG~~i  235 (302)
T d1gz6a_         219 LVLWLCHESC-EENGGLF  235 (302)
T ss_dssp             HHHHHTSTTC-CCCSCEE
T ss_pred             HHHHHcCCCc-CCCCcEE
Confidence            9999999765 7899853

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-46  Score=313.95  Aligned_cols=229  Identities=24%  Similarity=0.282  Sum_probs=192.1

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||+++||||++|||+++|+.|+++|++|++++|+++++++..++    .  .+....+|+.+.+.++..    .++.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~----~--~~~~~~~d~~~~~~~~~~----~~~~   72 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY----P--GIQTRVLDVTKKKQIDQF----ANEV   72 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS----T--TEEEEECCTTCHHHHHHH----HHHC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----c--CCceeeeecccccccccc----cccc
Confidence            38999999999999999999999999999999999998887665432    2  367788899887665544    4566


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCC-CCCCCChhhhhhH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGW-LPPPRMSFYNASK  201 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~-~~~~~~~~Y~asK  201 (287)
                      +++|++|||+|.....++.+. +.++|++.+++|+.+++.+++++.|.|.+++ |+||+++|..+. .+.+++..|+++|
T Consensus        73 ~~id~lVn~ag~~~~~~~~~~-~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sK  151 (245)
T d2ag5a1          73 ERLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTK  151 (245)
T ss_dssp             SCCSEEEECCCCCCCBCGGGC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHH
T ss_pred             ccceeEEecccccCCCChhhC-CHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHH
Confidence            899999999999988777664 5589999999999999999999999887655 899999998775 5788999999999


Q ss_pred             HHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCC---CHHHHHHHHHHhhcc
Q 042560          202 AAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQ---PTEECAKAIVNSACR  277 (287)
Q Consensus       202 aal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~evA~~i~~l~~~  277 (287)
                      +|+++|+|++|.|++++ ||||+|+||+++|++........    ...++..+......|++   +|||||+.+.||+++
T Consensus       152 aal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~----~~~~~~~~~~~~~~pl~R~~~pedva~~v~fL~s~  227 (245)
T d2ag5a1         152 AAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQAR----GNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASD  227 (245)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHS----SSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhh----hhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCh
Confidence            99999999999999998 99999999999999876543221    11234444444555554   699999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.|
T Consensus       228 ~s~~iTG~~i  237 (245)
T d2ag5a1         228 ESAYVTGNPV  237 (245)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhCCCcCceE
Confidence            9999999964

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=100.00  E-value=5.7e-45  Score=310.56  Aligned_cols=227  Identities=19%  Similarity=0.244  Sum_probs=193.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC-CHHHHHHHHHHHHH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVS-KVEDCKHFVDVTME  121 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~v~~~~~~~~~  121 (287)
                      |+++||+++||||++|||+++|++|+++|++|++++|+.++.++..+.....++.++.++.+|++ +.++++++++++.+
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD   80 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999998877666655555566668999999998 67889999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC----CCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT----KGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~----~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      ++|+||+||||||..         +.+.|++++++|+.+++.++++++|.|.++    +|+||++||..+..|.+++.+|
T Consensus        81 ~~g~iDilvnnAG~~---------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y  151 (254)
T d1sbya1          81 QLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVY  151 (254)
T ss_dssp             HHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHH
T ss_pred             HcCCCCEEEeCCCCC---------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHH
Confidence            999999999999962         348899999999999999999999999654    3899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+.+|+++|+.|+++. ||||+|+||+|+|+|.+.+....+     .++.........|..+|||+|+.++++++
T Consensus       152 ~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~va~~~~~~~~  226 (254)
T d1sbya1         152 SASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLD-----VEPRVAELLLSHPTQTSEQCGQNFVKAIE  226 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGG-----SCTTHHHHHTTSCCEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchh-----HHHHHHhccccCCCCCHHHHHHHHHHhhh
Confidence            999999999999999999887 999999999999998765422111     12223333445677789999999998886


Q ss_pred             cCCccccCCC
Q 042560          277 RGDRYLTQPS  286 (287)
Q Consensus       277 ~~~~~itG~~  286 (287)
                      ..   .||+.
T Consensus       227 ~~---~tG~v  233 (254)
T d1sbya1         227 AN---KNGAI  233 (254)
T ss_dssp             HC---CTTCE
T ss_pred             CC---CCCCE
Confidence            43   58874

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=300.45  Aligned_cols=231  Identities=21%  Similarity=0.234  Sum_probs=191.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +++||+|+||||++|||+++|++|+++|++|++++|+.+++++..+++.    .......+|+.+.+.+++..+++....
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG----NNCVFAPADVTSEKDVQTALALAKGKF   77 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC----CCccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999999999888877763    357888999999999999999999999


Q ss_pred             CCccEEEEccccCCCCCCCC-----CCCCCCcccchhehhhhHHHHHHHHHHHHhcC-------CCEEEEEcCCCCCCCC
Q 042560          124 GRLDHLVTNAGVVPMCLFED-----YTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-------KGKIIVVASAAGWLPP  191 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-------~g~iv~isS~~~~~~~  191 (287)
                      +.+|.+++|++.........     ..+.++|++.+++|+.+++++++++.|.|.++       +|+||++||..+..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~  157 (248)
T d2o23a1          78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ  157 (248)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred             ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCC
Confidence            99999999998775543321     22346789999999999999999999998532       4799999999999999


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-CCCCCCHHHHHH
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-LLPVQPTEECAK  269 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~evA~  269 (287)
                      |++++|+++|+|+++|+|.++.|++++ ||||+|+||+++|+|.......       ..+......+ ..++++|||||+
T Consensus       158 ~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~-------~~~~~~~~~pl~~R~g~peevA~  230 (248)
T d2o23a1         158 VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEK-------VCNFLASQVPFPSRLGDPAEYAH  230 (248)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------------CHHHHTCSSSCSCBCHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHH-------HHHHHHhcCCCCCCCcCHHHHHH
Confidence            999999999999999999999999998 9999999999999997753211       1111222222 255678999999


Q ss_pred             HHHHhhccCCccccCCCC
Q 042560          270 AIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       270 ~i~~l~~~~~~~itG~~~  287 (287)
                      +++||++  ++|+|||.+
T Consensus       231 ~v~fL~s--~~~itGq~I  246 (248)
T d2o23a1         231 LVQAIIE--NPFLNGEVI  246 (248)
T ss_dssp             HHHHHHH--CTTCCSCEE
T ss_pred             HHHHHHh--CCCCCceEe
Confidence            9999997  589999964

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-44  Score=309.47  Aligned_cols=237  Identities=24%  Similarity=0.266  Sum_probs=185.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEE---EeCChhHHHHHHH---HHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVL---VARRERQLREVAD---QAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~---~~r~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .|+++||||++|||+++|++|+++|++|+.   +.|+.+..+++.+   ++... +.++..+.+|++|.++++++++++.
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACP-PGSLETLQLDVRDSKSVAAARERVT   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCC-TTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhcc-CCceEEEeccccchHhhhhhhhhcc
Confidence            578999999999999999999999997554   4565554444333   33333 3479999999999999999998875


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhh
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNA  199 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~a  199 (287)
                      +  |++|++|||+|.....++.+. +.++|++.+++|+.++++++++++|.|++++ |+||++||..+..+.|+.+.|++
T Consensus        81 ~--g~idilvnnag~~~~~~~~~~-~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~a  157 (285)
T d1jtva_          81 E--GRVDVLVCNAGLGLLGPLEAL-GEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCA  157 (285)
T ss_dssp             T--SCCSEEEECCCCCCCSCGGGS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHH
T ss_pred             c--cchhhhhhcccccccccccch-hHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHH
Confidence            4  799999999999988877664 5589999999999999999999999998765 99999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCC-----CccchHHHHh-----hhhcCCCCCCHHHHH
Q 042560          200 SKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNG-----KLEVDQEIRD-----VQISLLPVQPTEECA  268 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~p~evA  268 (287)
                      ||+|+++|+++|+.|++++ ||||+|+||+|+|+|.++.......     .....++..+     ......+.++|||||
T Consensus       158 sKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA  237 (285)
T d1jtva_         158 SKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVA  237 (285)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHH
Confidence            9999999999999999988 9999999999999998765433211     0000111111     111223467899999


Q ss_pred             HHHHHhhccC---CccccCCCC
Q 042560          269 KAIVNSACRG---DRYLTQPSW  287 (287)
Q Consensus       269 ~~i~~l~~~~---~~~itG~~~  287 (287)
                      ++++++++.+   .+|+||+.+
T Consensus       238 ~~v~~~~~~~~p~~ry~~g~~~  259 (285)
T d1jtva_         238 EVFLTALRAPKPTLRYFTTERF  259 (285)
T ss_dssp             HHHHHHHHCSSCCSEEESCSTT
T ss_pred             HHHHHHHhCCCCCeEEecHHHH
Confidence            9999999754   589999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-41  Score=290.38  Aligned_cols=236  Identities=14%  Similarity=0.126  Sum_probs=194.1

Q ss_pred             CCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+||+++||||++  |||+++|+.|+++|++|++++|+++..+...+.....+  +...+..|+++..++.+.++++.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC--CcceeecccchHHHHHHHHHHhhh
Confidence            37899999999998  89999999999999999999999765555544444333  467788999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCC----CCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFED----YTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      .++++|++|||++.........    ....+.+...+++|..+.+.+.+.+.|.+++ ++.|+++||..+..+.|++..|
T Consensus        80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ii~iss~~~~~~~~~~~~Y  158 (258)
T d1qsga_          80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVM  158 (258)
T ss_dssp             TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEECGGGTSBCTTTTHH
T ss_pred             cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcEEEEecchhhccCCCCcHHH
Confidence            9999999999999876544321    1222446778899999999999999988864 5689999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      +++|+|+++|+|.+|.|++++ ||||+|+||+++|++.......     ....+......+..++++|||||+++.||++
T Consensus       159 ~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-----~~~~~~~~~~~pl~R~~~peeia~~v~fL~s  233 (258)
T d1qsga_         159 GLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF-----RKMLAHCEAVTPIRRTVTIEDVGNSAAFLCS  233 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTH-----HHHHHHHHHHSTTSSCCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchh-----hhHHHHHHhCCCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999999998 9999999999999987643111     1112222334455556789999999999999


Q ss_pred             cCCccccCCCC
Q 042560          277 RGDRYLTQPSW  287 (287)
Q Consensus       277 ~~~~~itG~~~  287 (287)
                      ++++|+||+.+
T Consensus       234 ~~s~~itG~~i  244 (258)
T d1qsga_         234 DLSAGISGEVV  244 (258)
T ss_dssp             GGGTTCCSCEE
T ss_pred             chhcCccCceE
Confidence            99999999864

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-42  Score=294.09  Aligned_cols=215  Identities=22%  Similarity=0.259  Sum_probs=184.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++||||||++|||+++|++|+++ |++|++++|+.++++++.++++..+. ++.++++|++|.++++++++++.+++|++
T Consensus         4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i   82 (275)
T d1wmaa1           4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYGGL   82 (275)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence            57799999999999999999986 89999999999999999999987764 68999999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------------  189 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------------  189 (287)
                      |+||||||+.......+. +.++|++.+++|+.+++++++.++|.|++ +|+||++||..+..                 
T Consensus        83 DiLVnNAGi~~~~~~~~~-~~~~~~~~~~vN~~g~~~l~~~~lp~m~~-~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~  160 (275)
T d1wmaa1          83 DVLVNNAGIAFKVADPTP-FHIQAEVTMKTNFFGTRDVCTELLPLIKP-QGRVVNVSSIMSVRALKSCSPELQQKFRSET  160 (275)
T ss_dssp             EEEEECCCCCCCTTCCSC-HHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred             EEEEEcCCcCCCCCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccceeccccccchhhhhhhcccc
Confidence            999999999877665554 33678999999999999999999999975 58999999975532                 


Q ss_pred             ------------------------CCCCChhhhhhHHHHHHHHHHHHHHhCC----C-eEEEEEeCCcccCCCcCCcccC
Q 042560          190 ------------------------PPPRMSFYNASKAAKIALYETLRVEFGG----D-IGITIVTPGLIESEITGGKFLN  240 (287)
Q Consensus       190 ------------------------~~~~~~~Y~asKaal~~~~~~la~e~~~----~-i~v~~i~PG~v~t~~~~~~~~~  240 (287)
                                              +......|++||+++.+|++.+++++++    . |+||+|+||+|+|+|.+..   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~---  237 (275)
T d1wmaa1         161 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK---  237 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT---
T ss_pred             cchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc---
Confidence                                    1223457999999999999999998743    3 9999999999999986531   


Q ss_pred             cCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh--ccCCccccCCCC
Q 042560          241 KNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA--CRGDRYLTQPSW  287 (287)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~--~~~~~~itG~~~  287 (287)
                                         ...+|||+|+.+++++  +++..++||+.|
T Consensus       238 -------------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~  267 (275)
T d1wmaa1         238 -------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFV  267 (275)
T ss_dssp             -------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEE
T ss_pred             -------------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEE
Confidence                               1346999999999987  455667888753

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=2.1e-40  Score=286.65  Aligned_cols=227  Identities=18%  Similarity=0.168  Sum_probs=183.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEE-----------------eecCCCH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAI-----------------PADVSKV  109 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~-----------------~~D~~~~  109 (287)
                      .+|+||||++|||+++|++|+++|++|++++++ .+..+++.+++...++.....+                 .+|++++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~   82 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF   82 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence            589999999999999999999999999998765 5567777777766554455554                 4559999


Q ss_pred             HHHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcc--------------cchhehhhhHHHHHHHHHHHHh--
Q 042560          110 EDCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPA--------------PAMDINFWGSAYGTYFAIPYLK--  173 (287)
Q Consensus       110 ~~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~--------------~~~~~n~~~~~~l~~~~~~~l~--  173 (287)
                      ++++++++++.+++|++|+||||||.....++.+.. .++|+              ..+.+|+.+++.+.+.+.+.+.  
T Consensus        83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND-EDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC--------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCC-HHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            999999999999999999999999998777665543 24443              3688999999999999988653  


Q ss_pred             ----cC-CCEEEEEcCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccc
Q 042560          174 ----QT-KGKIIVVASAAGWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEV  247 (287)
Q Consensus       174 ----~~-~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~  247 (287)
                          +. .++|++++|..+..+.+++.+|+++|+|+.+|+|.+|+|++++ ||||+|+||++.+....            
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~------------  229 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDM------------  229 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGGS------------
T ss_pred             HHHhcCCCCcccccccccccCCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccccC------------
Confidence                22 2689999999999999999999999999999999999999998 99999999986553211            


Q ss_pred             hHHHHhhhhcCC----CCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          248 DQEIRDVQISLL----PVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       248 ~~~~~~~~~~~~----~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      .++..+......    ++++|||||++++||+|++++|+|||.+
T Consensus       230 ~~~~~~~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i  273 (284)
T d1e7wa_         230 PPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV  273 (284)
T ss_dssp             CHHHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeE
Confidence            233444444444    4558999999999999999999999964

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-41  Score=288.57  Aligned_cols=218  Identities=31%  Similarity=0.433  Sum_probs=192.8

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |+||+|+||||++|||+++|++|+++|++|++++|+.++++++.+++....+..+..+.+|+++.+.++...+++.+.++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999999999988777667899999999999999999999999999


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      .+|+++||+|......+.+. +.+++++++++|+.+++.+++.++|.|++++|+||++||.++..+.|+...|++||+|+
T Consensus        92 ~~~~li~nag~~~~~~~~~~-~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p~~~~Y~asKaal  170 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHD-DIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFAL  170 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCS-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHHH
T ss_pred             CccccccccccccccccccC-CHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCCCchHHHHHHHHH
Confidence            99999999999877766664 55889999999999999999999999988789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC--C-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGG--D-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~--~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      ++|+++|+.|+++  . |+||+|+||+|+|+|..+.....               ......+|||+|+.++......
T Consensus       171 ~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~~---------------~~~~~~~~e~~a~~i~~~~~~~  232 (269)
T d1xu9a_         171 DGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGI---------------VHMQAAPKEECALEIIKGGALR  232 (269)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCGG---------------GGGGCBCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccCC---------------ccccCCCHHHHHHHHHHHhhcC
Confidence            9999999999863  3 99999999999999875422111               0112346899998888766544

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=5.5e-41  Score=296.42  Aligned_cols=239  Identities=13%  Similarity=0.085  Sum_probs=184.9

Q ss_pred             CCEEEEec--CCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-----------CeeEEE-----------
Q 042560           47 GKVVLITG--ASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-----------PFALAI-----------  102 (287)
Q Consensus        47 ~k~alVtG--a~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~-----------  102 (287)
                      +|++||||  +++|||+++|+.|+++|++|++++++................           ......           
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            79999999  557999999999999999999999987765444332211100           011222           


Q ss_pred             ---------eecCCCHHHHHHHHHHHHHhcCCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHHHHHHHH
Q 042560          103 ---------PADVSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGTYFAIPY  171 (287)
Q Consensus       103 ---------~~D~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  171 (287)
                               .+|+++.++++++++++.+++|++|++|||+|....  .++.+ .+.++|++.+++|+++.+.++|+++|.
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~-~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLN-TSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGG-CCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhh-hhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                     236778889999999999999999999999998754  33444 355889999999999999999999999


Q ss_pred             HhcCCCEEEEEcCCCCCCCCCC-ChhhhhhHHHHHHHHHHHHHHhCC-C-eEEEEEeCCcccCCCcCCccc---------
Q 042560          172 LKQTKGKIIVVASAAGWLPPPR-MSFYNASKAAKIALYETLRVEFGG-D-IGITIVTPGLIESEITGGKFL---------  239 (287)
Q Consensus       172 l~~~~g~iv~isS~~~~~~~~~-~~~Y~asKaal~~~~~~la~e~~~-~-i~v~~i~PG~v~t~~~~~~~~---------  239 (287)
                      |++ +|+||++||..+..+.|+ ...|+++|+|+++|+|.||.|+++ + ||||+|+||+|+|+......+         
T Consensus       161 m~~-~GsIv~iss~~~~~~~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~  239 (329)
T d1uh5a_         161 MKP-QSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTYENNT  239 (329)
T ss_dssp             EEE-EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC----------
T ss_pred             ccc-ccccccceeehhcccccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccchhhhcccchhhhhhhhh
Confidence            965 689999999999999887 567999999999999999999975 4 999999999999964432110         


Q ss_pred             --------------------------CcCCCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          240 --------------------------NKNGKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       240 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                                                .........++..+......|   +++|||||++++||+|+.++|||||.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~~~pedvA~~v~fLaSd~s~~iTGq~i  316 (329)
T d1uh5a_         240 NQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTI  316 (329)
T ss_dssp             --------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCchhCCccCCeE
Confidence                                      001111222344444444444   457999999999999999999999964

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.8e-40  Score=278.40  Aligned_cols=187  Identities=22%  Similarity=0.264  Sum_probs=162.3

Q ss_pred             CEEEEecCCChHHHHHHHHHH---HcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH--h
Q 042560           48 KVVLITGASSGIGKHLAYEYA---RRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME--H  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~---~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~  122 (287)
                      |+++||||++|||+++|++|+   ++|++|++++|+.++++++.+..+. + .++.++++|++|+++++++++++.+  +
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H-SNIHILEIDLRNFDAYDKLVADIEGVTK   80 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C-TTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-C-CcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence            789999999999999999996   4799999999999988877654443 3 3699999999999999999998854  6


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC------------CCEEEEEcCCCCCC-
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT------------KGKIIVVASAAGWL-  189 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~------------~g~iv~isS~~~~~-  189 (287)
                      ++++|++|||||+..........+.++|++.+++|+.+++.++++++|.|+++            .|++|+++|..+.. 
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~  160 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ  160 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence            78999999999987665444444557899999999999999999999999652            48999999988754 


Q ss_pred             --CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCC
Q 042560          190 --PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGG  236 (287)
Q Consensus       190 --~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~  236 (287)
                        +.+++.+|++||+|+.+|++.++.|++++ |+||+|+||+++|+|...
T Consensus       161 ~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~  210 (248)
T d1snya_         161 GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS  210 (248)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccc
Confidence              45678899999999999999999999988 999999999999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=3.8e-39  Score=277.52  Aligned_cols=236  Identities=17%  Similarity=0.118  Sum_probs=178.2

Q ss_pred             CCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+||++|||||+|  |||+++|++|+++|++|++++|+++. ++..+++...+. ...+..+|++++++++++++++.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~-~~~~~~l~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL-EKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT-HHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHHHhhCC-ceeEeeecccchhhHHHHHHHHHH
Confidence            47999999999865  99999999999999999999999653 344455544443 467789999999999999999999


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHH-hcC--CCEEEEEcCCCCCCCCCCChhhh
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYL-KQT--KGKIIVVASAAGWLPPPRMSFYN  198 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l-~~~--~g~iv~isS~~~~~~~~~~~~Y~  198 (287)
                      .++++|++|||+|........+... +.....+..+....+.........+ +..  ++.|+++++.....+.+....|+
T Consensus        80 ~~g~id~lV~nag~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~y~  158 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFAPKEALEGSLL-ETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMG  158 (274)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGG-GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHH
T ss_pred             HcCCCCeEEeecccccccccccccc-cccchhhhhhhccccccccccccccccccccCcceeeecccccccccccchhhh
Confidence            9999999999999876654444322 2333333333333333333333332 221  24577777777788888899999


Q ss_pred             hhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhcc
Q 042560          199 ASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACR  277 (287)
Q Consensus       199 asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~  277 (287)
                      ++|+|+.+++|+++.|++++ ||||+|+||+++|++.......+     ...+......+..++++|||||+.++||+|+
T Consensus       159 asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~-----~~~~~~~~~~p~~r~~~pedIA~~v~fL~S~  233 (274)
T d2pd4a1         159 LAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFR-----MILKWNEINAPLRKNVSLEEVGNAGMYLLSS  233 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHH-----HHHHHHHHHSTTSSCCCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchH-----HHHHHHhhhhhccCCcCHHHHHHHHHHHhCh
Confidence            99999999999999999998 99999999999999876432111     1122233444556677899999999999999


Q ss_pred             CCccccCCCC
Q 042560          278 GDRYLTQPSW  287 (287)
Q Consensus       278 ~~~~itG~~~  287 (287)
                      +++|+|||.|
T Consensus       234 ~s~~itG~~i  243 (274)
T d2pd4a1         234 LSSGVSGEVH  243 (274)
T ss_dssp             GGTTCCSCEE
T ss_pred             hhCCCcCceE
Confidence            9999999964

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=100.00  E-value=4.9e-40  Score=286.19  Aligned_cols=237  Identities=16%  Similarity=0.096  Sum_probs=182.3

Q ss_pred             CCCCCCCCEEEEecCCC--hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-----------CeeEEEeec--
Q 042560           41 NAEDVAGKVVLITGASS--GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-----------PFALAIPAD--  105 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~--giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~D--  105 (287)
                      ++++|+||++|||||+|  |||+++|++|+++|++|++++|+................           ..-....+|  
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV   81 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence            46889999999999876  999999999999999999999976654333322211100           001222333  


Q ss_pred             ------------------CCCHHHHHHHHHHHHHhcCCccEEEEccccCCC--CCCCCCCCCCCcccchhehhhhHHHHH
Q 042560          106 ------------------VSKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPM--CLFEDYTDITKPAPAMDINFWGSAYGT  165 (287)
Q Consensus       106 ------------------~~~~~~v~~~~~~~~~~~~~idvli~nag~~~~--~~~~~~~~~~~~~~~~~~n~~~~~~l~  165 (287)
                                        .++..+++++++++.+++|++|++|||||....  .++.+ .+.++|++.+++|+.+++.++
T Consensus        82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~-~~~~~~~~~~~vn~~~~~~~~  160 (297)
T d1d7oa_          82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLE-TSRKGYLAAISASSYSFVSLL  160 (297)
T ss_dssp             CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGG-CCHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhh-hhcccccccccchhhhhhhhh
Confidence                              355667789999999999999999999998643  34444 355789999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEEcCCCCC-CCCCCChhhhhhHHHHHHHHHHHHHHhC-CC-eEEEEEeCCcccCCCcCCcccCcC
Q 042560          166 YFAIPYLKQTKGKIIVVASAAGW-LPPPRMSFYNASKAAKIALYETLRVEFG-GD-IGITIVTPGLIESEITGGKFLNKN  242 (287)
Q Consensus       166 ~~~~~~l~~~~g~iv~isS~~~~-~~~~~~~~Y~asKaal~~~~~~la~e~~-~~-i~v~~i~PG~v~t~~~~~~~~~~~  242 (287)
                      ++++|.+.+ +|+++++++.... ...+....|+++|+++.++++.++.+++ ++ ||||+|+||+++|++.....    
T Consensus       161 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~----  235 (297)
T d1d7oa_         161 SHFLPIMNP-GGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIG----  235 (297)
T ss_dssp             HHHGGGEEE-EEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCS----
T ss_pred             hHHHHHhhc-CCcceeeeehhhcccccccccceecccccccccccccchhccccceEEecccccccccchhhhhcc----
Confidence            999988876 4556666555544 4457788899999999999999999996 45 99999999999999876532    


Q ss_pred             CCccchHHHHhhhhcCCC---CCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          243 GKLEVDQEIRDVQISLLP---VQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~---~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                          ..++..+......|   +++|||||++++||+|+.++|+|||.+
T Consensus       236 ----~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i  279 (297)
T d1d7oa_         236 ----FIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI  279 (297)
T ss_dssp             ----HHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ----CCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceE
Confidence                23344444444444   557999999999999999999999964

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-40  Score=279.32  Aligned_cols=214  Identities=14%  Similarity=0.133  Sum_probs=181.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--  123 (287)
                      +||+++||||++|||+++|++|+++|++|++++++....           ........+|.++.++.+.+.+++.+..  
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-----------ASASVIVKMTDSFTEQADQVTAEVGKLLGD   69 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-----------SSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-----------ccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999876531           1245667788888999998888887765  


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      +++|++|||||........+..+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..+.+++.+|++||+|
T Consensus        70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-~G~Iv~isS~~~~~~~~~~~~Y~asKaa  148 (236)
T d1dhra_          70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE-GGLLTLAGAKAALDGTPGMIGYGMAKGA  148 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCGGGGSCCTTBHHHHHHHHH
T ss_pred             CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc-ccceeEEccHHHcCCccCCcccHHHHHH
Confidence            469999999997655554444455779999999999999999999999975 6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCCc
Q 042560          204 KIALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGDR  280 (287)
Q Consensus       204 l~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~~  280 (287)
                      +++|+++|+.|++  +. ||||+|+||+++|+|.++.....+               ...+.+|||+|+.+++|+++.++
T Consensus       149 l~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~~~---------------~~~~~~pe~va~~~~~l~s~~~~  213 (236)
T d1dhra_         149 VHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEAD---------------FSSWTPLEFLVETFHDWITGNKR  213 (236)
T ss_dssp             HHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTSC---------------GGGSEEHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCccch---------------hhcCCCHHHHHHHHHHHhCCCcc
Confidence            9999999999997  45 999999999999998764332111               11234599999999999999999


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      ++||+.
T Consensus       214 ~i~G~~  219 (236)
T d1dhra_         214 PNSGSL  219 (236)
T ss_dssp             CCTTCE
T ss_pred             CCCCCe
Confidence            999974

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.9e-38  Score=270.53  Aligned_cols=228  Identities=21%  Similarity=0.232  Sum_probs=179.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-HHHHHHHHHhcCCCeeEEEeecCCC----HHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-LREVADQAELMGSPFALAIPADVSK----VEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~----~~~v~~~~~~~~~~  122 (287)
                      .+||||||++|||+++|++|+++|++|++++|+.++ .+++.+++....+.+....+.|..+    ++.++++++++.++
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999998665 5667777777665667777766544    56788888889999


Q ss_pred             cCCccEEEEccccCCCCCCCCCCC--CCC--------cccchhehhhhHHHHHHHHHHHHhc------CCCEEEEEcCCC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTD--ITK--------PAPAMDINFWGSAYGTYFAIPYLKQ------TKGKIIVVASAA  186 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~--~~~--------~~~~~~~n~~~~~~l~~~~~~~l~~------~~g~iv~isS~~  186 (287)
                      +|++|++|||||+..+.+..+...  .+.        +...+..|+.+++...+...+.+..      ..+.+++++|..
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (266)
T d1mxha_          82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred             hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence            999999999999987655433211  111        2234566777777777766665432      236888999999


Q ss_pred             CCCCCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC----
Q 042560          187 GWLPPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV----  261 (287)
Q Consensus       187 ~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  261 (287)
                      +..+.|++..|++||+|+++|++.+++|++++ ||||+|+||+++|++...            ++..+......|+    
T Consensus       162 ~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~------------~~~~~~~~~~~pl~r~~  229 (266)
T d1mxha_         162 TDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP------------QETQEEYRRKVPLGQSE  229 (266)
T ss_dssp             GGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC------------HHHHHHHHTTCTTTSCC
T ss_pred             ccccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC------------HHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999988 999999999999986542            3333444444444    


Q ss_pred             CCHHHHHHHHHHhhccCCccccCCCC
Q 042560          262 QPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       262 ~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ++|||||++++||+|++++|+|||.+
T Consensus       230 ~~peeva~~v~fL~s~~s~~itG~~i  255 (266)
T d1mxha_         230 ASAAQIADAIAFLVSKDAGYITGTTL  255 (266)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CCHHHHHHHHHHHhCchhCCccCCeE
Confidence            58999999999999999999999964

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=8.3e-39  Score=271.94  Aligned_cols=217  Identities=22%  Similarity=0.286  Sum_probs=171.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+.|++|||||++|||+++|++|+++|+  +|++++|+.++++++.    ...+.+++++++|++|+++++++++++.+.
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~   76 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK----SIKDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH----TCCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH----HhhCCceEEEEEecCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999999997  6889999998876643    333457999999999999999999999998


Q ss_pred             cC--CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC------------CCEEEEEcCCCCC
Q 042560          123 FG--RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT------------KGKIIVVASAAGW  188 (287)
Q Consensus       123 ~~--~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~------------~g~iv~isS~~~~  188 (287)
                      ++  ++|++|||||+..........+.++|++.+++|+.+++.+++.++|.|+++            .+++++++|..+.
T Consensus        77 ~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~  156 (250)
T d1yo6a1          77 VGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGS  156 (250)
T ss_dssp             HGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGC
T ss_pred             hCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccc
Confidence            76  499999999987653333334557899999999999999999999999643            2688998876554


Q ss_pred             CC-------CCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC
Q 042560          189 LP-------PPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP  260 (287)
Q Consensus       189 ~~-------~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (287)
                      .+       ..+..+|++||+|+.+|++.++.|+++. |+||+|+||+|+|+|..+.                      .
T Consensus       157 ~~~~~~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~----------------------~  214 (250)
T d1yo6a1         157 ITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKN----------------------A  214 (250)
T ss_dssp             STTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------------
T ss_pred             ccCCcccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCC----------------------C
Confidence            32       2345679999999999999999999988 9999999999999986531                      1


Q ss_pred             CCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          261 VQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       261 ~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      ..+|||.|+.++..+.+....-+|..|
T Consensus       215 ~~~~e~~a~~~~~~~~~~~~~~sG~f~  241 (250)
T d1yo6a1         215 ALTVEQSTAELISSFNKLDNSHNGRFF  241 (250)
T ss_dssp             ----HHHHHHHHHHHTTCCGGGTTCEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCeEEE
Confidence            246899999999999876666777643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.9e-39  Score=270.20  Aligned_cols=219  Identities=22%  Similarity=0.244  Sum_probs=175.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|+||||||++|||+++|++|+++|++|++++|+.+.             .+....++|+++......+..+..+.. ..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~   66 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-------------EDLIYVEGDVTREEDVRRAVARAQEEA-PL   66 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-------------SSSEEEECCTTCHHHHHHHHHHHHHHS-CE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-------------ccceEeeccccchhhhHHHHHhhhccc-cc
Confidence            5999999999999999999999999999999998653             246778999999999999988877664 44


Q ss_pred             cEEEEccccCCCCCC---CCCCCCCCcccchhehhhhHHHHHHHHHHHHh------cC-CCEEEEEcCCCCCCCCCCChh
Q 042560          127 DHLVTNAGVVPMCLF---EDYTDITKPAPAMDINFWGSAYGTYFAIPYLK------QT-KGKIIVVASAAGWLPPPRMSF  196 (287)
Q Consensus       127 dvli~nag~~~~~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~------~~-~g~iv~isS~~~~~~~~~~~~  196 (287)
                      +..+++++.......   ....+.+.+++.+++|+.+++.+++.+.+.+.      ++ .|+||++||..+..+.+++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~  146 (241)
T d1uaya_          67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAA  146 (241)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHH
T ss_pred             cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCchh
Confidence            566666665433211   12233456788999999999999999999853      22 389999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh
Q 042560          197 YNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA  275 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~  275 (287)
                      |+++|+|+.+|+|+++.|++++ ||||+|+||+++|++.......      ..++..++.....++++|||||++++||+
T Consensus       147 Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~------~~~~~~~~~~~~~R~g~pedvA~~v~fL~  220 (241)
T d1uaya_         147 YAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEK------AKASLAAQVPFPPRLGRPEEYAALVLHIL  220 (241)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHH------HHHHHHTTCCSSCSCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhh------HHHHHHhcCCCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999998 9999999999999987653211      11222222222355678999999999999


Q ss_pred             ccCCccccCCCC
Q 042560          276 CRGDRYLTQPSW  287 (287)
Q Consensus       276 ~~~~~~itG~~~  287 (287)
                      |  ++|+|||.+
T Consensus       221 s--~~~iTG~~i  230 (241)
T d1uaya_         221 E--NPMLNGEVV  230 (241)
T ss_dssp             H--CTTCCSCEE
T ss_pred             h--CCCCCCCEE
Confidence            8  479999964

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=100.00  E-value=5.5e-38  Score=269.26  Aligned_cols=239  Identities=18%  Similarity=0.126  Sum_probs=183.5

Q ss_pred             CCCCCEEEEecC--CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGA--SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa--~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+||+++||||  ++|||+++|++|+++|++|++++|+.+++.+.   +....+.+...+++|++++++++++++.+.+
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~---~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~   79 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQR---ITDRLPAKAPLLELDVQNEEHLASLAGRVTE   79 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHH---HHTTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHH---HHHHcCCceeeEeeecccccccccccchhhh
Confidence            378999999995  57999999999999999999999998765432   2222344677889999999999999999887


Q ss_pred             hc---CCccEEEEccccCCCCCCCC----CCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCC
Q 042560          122 HF---GRLDHLVTNAGVVPMCLFED----YTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRM  194 (287)
Q Consensus       122 ~~---~~idvli~nag~~~~~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~  194 (287)
                      .+   +.+|+++||+|+........    ..+.+.+.+.+..|..+.+...+...+.+.  ++.+++++|.....+.|++
T Consensus        80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~~~~~~~p~~  157 (268)
T d2h7ma1          80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMN--PGGSIVGMDFDPSRAMPAY  157 (268)
T ss_dssp             HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE--EEEEEEEEECCCSSCCTTT
T ss_pred             ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcc--cccccccccccccccCccc
Confidence            64   67999999999875433221    122345667788888888877777665443  3456666777777888999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCc--cchHHHHhhhhcCCC----CCCHHHH
Q 042560          195 SFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKL--EVDQEIRDVQISLLP----VQPTEEC  267 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~p~ev  267 (287)
                      ..|+++|+|+.+|++.+++|++++ ||||+|+||+++|++..+.........  ...++..+......|    +++||||
T Consensus       158 ~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dv  237 (268)
T d2h7ma1         158 NWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPV  237 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHH
T ss_pred             chhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHH
Confidence            999999999999999999999998 999999999999998765443322211  111233333333344    5679999


Q ss_pred             HHHHHHhhccCCccccCCCC
Q 042560          268 AKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       268 A~~i~~l~~~~~~~itG~~~  287 (287)
                      |+.+.||+|+.++|+|||.+
T Consensus       238 a~~v~fL~Sd~a~~iTG~~i  257 (268)
T d2h7ma1         238 AKTVCALLSDWLPATTGDII  257 (268)
T ss_dssp             HHHHHHHHSSSCTTCCSEEE
T ss_pred             HHHHHHHhCchhcCccCCEE
Confidence            99999999999999999853

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-38  Score=267.43  Aligned_cols=213  Identities=15%  Similarity=0.153  Sum_probs=174.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH--hcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME--HFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~  124 (287)
                      +++++||||++|||+++|++|+++|++|++++|+..+..           .......+|..+.++.+...+.+.+  +++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   70 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----------DSNILVDGNKNWTEQEQSILEQTASSLQGS   70 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----------SEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-----------cccceeccccCchhHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999999999875321           2355667888888888877777666  458


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ++|++|||||.............+.|+.++++|+.+++.++++++|.|++ +|+||++||..+..+.+++.+|+++|+|+
T Consensus        71 ~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~-~g~Iv~isS~~~~~~~~~~~~Y~asKaal  149 (235)
T d1ooea_          71 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP-GGLLQLTGAAAAMGPTPSMIGYGMAKAAV  149 (235)
T ss_dssp             CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEECCGGGGSCCTTBHHHHHHHHHH
T ss_pred             CeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc-ceEEEEeccHHhcCCcccccchHHHHHHH
Confidence            99999999998765444443344678899999999999999999999975 58999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC--CC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhh-ccCCc
Q 042560          205 IALYETLRVEFG--GD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSA-CRGDR  280 (287)
Q Consensus       205 ~~~~~~la~e~~--~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~-~~~~~  280 (287)
                      ++|+++|+.|++  +. |+||+|+||+++|+|.++.....+               .....+|||+|+.+++++ ++.++
T Consensus       150 ~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~~~~~---------------~~~~~~~~~va~~~~~~l~~~~~~  214 (235)
T d1ooea_         150 HHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNAD---------------HSSWTPLSFISEHLLKWTTETSSR  214 (235)
T ss_dssp             HHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTCC---------------GGGCBCHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhCcCCc---------------cccCCCHHHHHHHHHHHhcCcccc
Confidence            999999999997  34 999999999999998765332111               112346999999998555 55678


Q ss_pred             cccCCC
Q 042560          281 YLTQPS  286 (287)
Q Consensus       281 ~itG~~  286 (287)
                      ++||+.
T Consensus       215 ~~tG~~  220 (235)
T d1ooea_         215 PSSGAL  220 (235)
T ss_dssp             CCTTCE
T ss_pred             CCCceE
Confidence            899974

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=100.00  E-value=1.7e-35  Score=252.08  Aligned_cols=210  Identities=19%  Similarity=0.249  Sum_probs=155.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-CCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-GRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~~i  126 (287)
                      |+++||||++|||+++|++|+++|++|++++|+.++                  ..+|+.+.+..+....++..+. +.+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~------------------~~~d~~~~~~~~~~~~~~~~~~~~~i   63 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE------------------VIADLSTAEGRKQAIADVLAKCSKGM   63 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS------------------EECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH------------------HHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence            789999999999999999999999999999997542                  3579999999888876666554 679


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCC----------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWL----------------  189 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~----------------  189 (287)
                      |+++||||...        ..+.+.+...+|..+...+.+...+.+.+.. +...++++.....                
T Consensus        64 d~lv~~Ag~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  135 (257)
T d1fjha_          64 DGLVLCAGLGP--------QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGE  135 (257)
T ss_dssp             SEEEECCCCCT--------TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTC
T ss_pred             cEEEEcCCCCC--------cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCc
Confidence            99999999743        2256777889999999999999999876654 5565655543221                


Q ss_pred             ------------CCCCChhhhhhHHHHHHHHHHHHHHhCCC-eEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhh
Q 042560          190 ------------PPPRMSFYNASKAAKIALYETLRVEFGGD-IGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQI  256 (287)
Q Consensus       190 ------------~~~~~~~Y~asKaal~~~~~~la~e~~~~-i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~  256 (287)
                                  +.++..+|++||+|+++|+|++|.||+++ ||||+|+||+++|++.+.....+.    ..++..+...
T Consensus       136 ~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~~~  211 (257)
T d1fjha_         136 EAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPR----YGESIAKFVP  211 (257)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-------------------------CCC
T ss_pred             EEEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHH----HHHHHHhcCC
Confidence                        12234579999999999999999999988 999999999999999876543321    1122233334


Q ss_pred             cCCCCCCHHHHHHHHHHhhccCCccccCCCC
Q 042560          257 SLLPVQPTEECAKAIVNSACRGDRYLTQPSW  287 (287)
Q Consensus       257 ~~~~~~~p~evA~~i~~l~~~~~~~itG~~~  287 (287)
                      +..++++|||||++++||+|++++|+|||.+
T Consensus       212 PlgR~g~p~eva~~v~fL~S~~s~~itG~~i  242 (257)
T d1fjha_         212 PMGRRAEPSEMASVIAFLMSPAASYVHGAQI  242 (257)
T ss_dssp             STTSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             CCCCCcCHHHHHHHHHHHhCchhCCccCceE
Confidence            5566778999999999999999999999964

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.97  E-value=3.2e-30  Score=219.57  Aligned_cols=213  Identities=19%  Similarity=0.192  Sum_probs=165.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChh---HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRER---QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++++++||||++|||+++|++|+++|+ +|++++|+..   ..++..++++..+ .++.++.+|++|.++++++++++.+
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g-~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALG-ARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhcc-ccccccccccchHHHHHHhhccccc
Confidence            578999999999999999999999999 5889999753   4556666666554 5799999999999999999998765


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                      . +++|.+|||+|.....++.+. +.+++++.+++|+.+++.+.+.+.+   ...+++|++||..+..+.++++.|+++|
T Consensus        87 ~-~~i~~vv~~ag~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~~~~~---~~~~~iv~~SS~a~~~g~~~~~~YaAak  161 (259)
T d2fr1a1          87 D-VPLSAVFHAAATLDDGTVDTL-TGERIERASRAKVLGARNLHELTRE---LDLTAFVLFSSFASAFGAPGLGGYAPGN  161 (259)
T ss_dssp             T-SCEEEEEECCCCCCCCCGGGC-CHHHHHHHTHHHHHHHHHHHHHHTT---SCCSEEEEEEEHHHHTCCTTCTTTHHHH
T ss_pred             c-ccccccccccccccccccccc-cHHHHHHHhhhhccchhHHHHHhhc---cCCceEeeecchhhccCCcccHHHHHHH
Confidence            4 689999999999988877664 4578999999999999887765322   2348999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhc-CCCCCCHHHHHHHHHHhhccCC
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQIS-LLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      +++++|++.++.+   .+++++|+||++.++.....            ...+++.. ..+..+|+|+++.+..+++.+.
T Consensus       162 a~l~~la~~~~~~---Gi~v~~I~pg~~~~~g~~~~------------~~~~~~~~~G~~~~~~~~~~~~l~~~l~~~~  225 (259)
T d2fr1a1         162 AYLDGLAQQRRSD---GLPATAVAWGTWAGSGMAEG------------PVADRFRRHGVIEMPPETACRALQNALDRAE  225 (259)
T ss_dssp             HHHHHHHHHHHHT---TCCCEEEEECCBC------------------------CTTTTEECBCHHHHHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHhC---CCCEEECCCCcccCCccccc------------hHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            9999988877653   28999999999876532210            01111111 1122369999999999887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.78  E-value=1.3e-20  Score=152.48  Aligned_cols=156  Identities=13%  Similarity=-0.021  Sum_probs=112.6

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ....+++||+++||||++|||+++|+.|+++|++|++++|+.+++++..+++....  ++....+|++|.+++++++   
T Consensus        16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---   90 (191)
T d1luaa1          16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAV---   90 (191)
T ss_dssp             HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHT---
T ss_pred             HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHh---
Confidence            45679999999999999999999999999999999999999999999988886654  3456789999999887664   


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-CCCChhhh
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-PPRMSFYN  198 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-~~~~~~Y~  198 (287)
                          +++|++|||+|....    . .+.+.|++.+++|+.+.++....+.+.+.........+++.....+ ..+...|+
T Consensus        91 ----~~iDilin~Ag~g~~----~-~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~y~  161 (191)
T d1luaa1          91 ----KGAHFVFTAGAIGLE----L-LPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLK  161 (191)
T ss_dssp             ----TTCSEEEECCCTTCC----C-BCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHHHHHHHHHH
T ss_pred             ----cCcCeeeecCccccc----c-CCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEeccCcCcHHHH
Confidence                579999999997432    1 2346788888888777666544433322221222222222222111 12345699


Q ss_pred             hhHHHHHHHHH
Q 042560          199 ASKAAKIALYE  209 (287)
Q Consensus       199 asKaal~~~~~  209 (287)
                      ++|+++..+++
T Consensus       162 ~sk~a~~~l~~  172 (191)
T d1luaa1         162 LHRACIAKLFE  172 (191)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.4e-17  Score=145.51  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=127.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH-----HHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ-----LREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      .|+||||||+|.||.+++++|.++|++|++++|....     ++....+.. ....++.++.+|++|.++++++++..  
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~--   77 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH-TCNPKFHLHYGDLSDTSNLTRILREV--   77 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHH--
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhh-hcCCCeEEEEeecCCHHHHHHHHhcc--
Confidence            4899999999999999999999999999999996432     222222211 12346899999999999999998764  


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCC-----C------C
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGW-----L------P  190 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~-----~------~  190 (287)
                         .+|+++|.|+......     +.++....+++|+.++..+++++...-.++..++|++||..-.     .      +
T Consensus        78 ---~~d~v~h~aa~~~~~~-----~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~  149 (357)
T d1db3a_          78 ---QPDEVYNLGAMSHVAV-----SFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTP  149 (357)
T ss_dssp             ---CCSEEEECCCCCTTTT-----TTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSC
T ss_pred             ---CCCEEEEeecccccch-----hhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCC
Confidence               6899999999865432     2355667889999999999888755322333589999985421     1      1


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                      ..+...|+.+|.+.+.+++.+++.++  +.+..+.|+.+..|.
T Consensus       150 ~~P~~~Y~~sK~~~E~~~~~~~~~~~--l~~~ilR~~~vyGp~  190 (357)
T d1db3a_         150 FYPRSPYAVAKLYAYWITVNYRESYG--MYACNGILFNHESPR  190 (357)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhC--CCEEEEEeccccCCC
Confidence            22356799999999999999999876  677788888887774

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.66  E-value=2.5e-15  Score=131.53  Aligned_cols=171  Identities=18%  Similarity=0.179  Sum_probs=126.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +||+++||||+|.||..++++|.++|++|+.+.|+.++.+......... .......+..|++|.+++.+++       .
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-------~   82 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI-------K   82 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT-------T
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhc-------c
Confidence            5899999999999999999999999999999999988766655444332 2334556779999998876655       3


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-CC-----------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-PP-----------  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-~~-----------  192 (287)
                      ..|+++|+++.....        ......+..|+.+..++++.+...  +.-.++|++||..+... .+           
T Consensus        83 ~~~~v~~~a~~~~~~--------~~~~~~~~~nv~gt~~ll~~~~~~--~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~  152 (342)
T d1y1pa1          83 GAAGVAHIASVVSFS--------NKYDEVVTPAIGGTLNALRAAAAT--PSVKRFVLTSSTVSALIPKPNVEGIYLDEKS  152 (342)
T ss_dssp             TCSEEEECCCCCSCC--------SCHHHHHHHHHHHHHHHHHHHHTC--TTCCEEEEECCGGGTCCCCTTCCCCEECTTC
T ss_pred             cchhhhhhccccccc--------ccccccccchhhhHHHHHHhhhcc--cccccccccccceeeccCCCCCCCccccccc
Confidence            679999999874321        334456677888877777665331  11269999999654321 10           


Q ss_pred             -------------------CChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          193 -------------------RMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       193 -------------------~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                                         ....|+.+|.+.+.+++.++.+++..+++..++|+.+-.+.
T Consensus       153 ~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~  212 (342)
T d1y1pa1         153 WNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTI  212 (342)
T ss_dssp             CCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCC
T ss_pred             cccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCC
Confidence                               12359999999999999999988766778888888877653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.2e-15  Score=133.61  Aligned_cols=173  Identities=16%  Similarity=0.132  Sum_probs=122.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      +|++|||||+|.||.+++++|+++|++|+++++....-.............++.++.+|++|.++++.+++.     .++
T Consensus         1 ~K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-----~~~   75 (347)
T d1z45a2           1 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE-----YKI   75 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH-----SCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhc-----cCC
Confidence            478999999999999999999999999999876322111111111111123588899999999999888764     279


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC---------------CC
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL---------------PP  191 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~---------------~~  191 (287)
                      |++||.|+......     ..+.......+|+.+...+++++...   +-.++|++||.....               +.
T Consensus        76 d~VihlAa~~~~~~-----~~~~~~~~~~~N~~~t~~ll~~~~~~---~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~  147 (347)
T d1z45a2          76 DSVIHFAGLKAVGE-----STQIPLRYYHNNILGTVVLLELMQQY---NVSKFVFSSSATVYGDATRFPNMIPIPEECPL  147 (347)
T ss_dssp             CEEEECCSCCCHHH-----HHHSHHHHHHHHHHHHHHHHHHHHHH---TCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCC
T ss_pred             CEEEEccccccccc-----cccCcccccccchhhhHHHHHHHHhc---ccceEEeecceeeecCcccCCCCCccccccCC
Confidence            99999999754321     11344567889999998888887442   225899999855331               12


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .+...|+.+|.+.+.+++.+.......+.+..+.|+.+..+
T Consensus       148 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~  188 (347)
T d1z45a2         148 GPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGA  188 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECC
T ss_pred             CCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEee
Confidence            23567999999999999999877554466666666655543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.4e-16  Score=134.74  Aligned_cols=215  Identities=12%  Similarity=0.045  Sum_probs=139.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-----HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRER-----QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |+||||||+|.||.+++++|.++|++|+.++|...     .++............++.++.+|++|.+.+.++++..   
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---   78 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV---   78 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH---
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc---
Confidence            44599999999999999999999999999998543     2222222222222346899999999999999888764   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CC
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PP  191 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~  191 (287)
                        .+++++|.++......     ..+.....+++|+.+...+.+++...-..+..++|++||.+-..           +.
T Consensus        79 --~~~~v~~~~a~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~  151 (347)
T d1t2aa_          79 --KPTEIYNLGAQSHVKI-----SFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF  151 (347)
T ss_dssp             --CCSEEEECCSCCCHHH-----HHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC
T ss_pred             --ccceeeeeeeccccch-----hhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC
Confidence              6788888887653321     11333456789999999888887654333335899998854221           11


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC------------
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL------------  259 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  259 (287)
                      .+...|+.||.+.+.+++.+++.++  +.+..+.|+.+..|.....+...    .....+........            
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~--~~~~ilr~~~vyGp~~~~~~~~~----~~~~~i~~~~~~~~~~~~~g~g~~~r  225 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYN--LFAVNGILFNHESPRRGANFVTR----KISRSVAKIYLGQLECFSLGNLDAKR  225 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECTTSCTTSHHH----HHHHHHHHHHHTSCSCEEESCTTCEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEEecceeCCCCCCCcccc----ccceeeehhhcCCcceeecCCCccee
Confidence            2346799999999999999988876  56666788776665322111000    00111111111111            


Q ss_pred             CCCCHHHHHHHHHHhhccC
Q 042560          260 PVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       260 ~~~~p~evA~~i~~l~~~~  278 (287)
                      .+...+|+++++..++...
T Consensus       226 ~~i~v~D~~~a~~~~~~~~  244 (347)
T d1t2aa_         226 DWGHAKDYVEAMWLMLQND  244 (347)
T ss_dssp             CCEEHHHHHHHHHHHHHSS
T ss_pred             eeeEecHHHHHHHHHhhcC
Confidence            1224899999999998764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.62  E-value=1.5e-15  Score=134.04  Aligned_cols=208  Identities=17%  Similarity=0.103  Sum_probs=143.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEE-EeCChhHH-HHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVL-VARRERQL-REVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~-~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++|||||+|.||.+++++|++.|+++++ +++..... .+....+  ....++.++.+|++|.+.++++++..     .+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~   74 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI--SESNRYNFEHADICDSAEITRIFEQY-----QP   74 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT--TTCTTEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh--hhcCCcEEEEccCCCHHHHHHHHHhC-----CC
Confidence            4899999999999999999999997554 54422110 0111111  11236889999999999998887653     68


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc------CCCEEEEEcCCCCCC-----------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ------TKGKIIVVASAAGWL-----------  189 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~------~~g~iv~isS~~~~~-----------  189 (287)
                      |++||+|+......     ..++....+++|+.+...+++.+...-..      ...++|++||.....           
T Consensus        75 d~VihlAa~~~~~~-----~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~  149 (361)
T d1kewa_          75 DAVMHLAAESHVDR-----SITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENS  149 (361)
T ss_dssp             SEEEECCSCCCHHH-----HHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTT
T ss_pred             CEEEECccccchhh-----HHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccc
Confidence            99999998753221     12445678999999999999998875432      225899999865331           


Q ss_pred             ----------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC
Q 042560          190 ----------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL  259 (287)
Q Consensus       190 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (287)
                                +..+...|+.+|.+.+.+++.++..++  +.+..+.|+.+..|....     +   ...+.+.+......
T Consensus       150 ~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~--i~~~~lR~~~vyGp~~~~-----~---~~i~~~i~~~~~g~  219 (361)
T d1kewa_         150 VTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYG--LPTIVTNCSNNYGPYHFP-----E---KLIPLVILNALEGK  219 (361)
T ss_dssp             SCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEESTTCCT-----T---SHHHHHHHHHHHTC
T ss_pred             cCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEecCceECcCCCc-----C---cHHHHHHHHHHcCC
Confidence                      111245699999999999999999886  777888888888764321     0   01122222222222


Q ss_pred             CC------------CCHHHHHHHHHHhhccC
Q 042560          260 PV------------QPTEECAKAIVNSACRG  278 (287)
Q Consensus       260 ~~------------~~p~evA~~i~~l~~~~  278 (287)
                      ++            ...+|+|+++..++...
T Consensus       220 ~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~  250 (361)
T d1kewa_         220 PLPIYGKGDQIRDWLYVEDHARALHMVVTEG  250 (361)
T ss_dssp             CEEEETTSCCEEEEEEHHHHHHHHHHHHHHC
T ss_pred             CcEEeCCCCeEEeCEEHHHHHHHHHHHHhcC
Confidence            21            13899999999999754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.3e-15  Score=133.00  Aligned_cols=172  Identities=17%  Similarity=0.131  Sum_probs=124.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++|||||+|.||..++++|+++|++|++++|-....+......+.....++.++++|++|.+.++++++.     .++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~-----~~~d~   76 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD-----HAIDT   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH-----TTCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhc-----cCCCE
Confidence            4999999999999999999999999999986322211111122111123688999999999999888875     36899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC------------CCCChh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP------------PPRMSF  196 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~------------~~~~~~  196 (287)
                      +||.|+......     ..++..+.+++|+.++..+++++...   +-.++|++||.....+            ......
T Consensus        77 ViHlAa~~~~~~-----~~~~~~~~~~~Nv~gt~nlL~~~~~~---~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~  148 (338)
T d1udca_          77 VIHFAGLKAVGE-----SVQKPLEYYDNNVNGTLRLISAMRAA---NVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSP  148 (338)
T ss_dssp             EEECCSCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHH---TCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSH
T ss_pred             EEECCCccchhh-----HHhCHHHHHHhHHHHHHHHHHHHHHh---CCCEEEecCcceEEccccccccccccccCCCcch
Confidence            999999643221     12345678999999999988887553   2258999888654321            123667


Q ss_pred             hhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          197 YNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       197 Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      |+.+|.+.+.+.+..+.++.. +.+..++|+.+..+..
T Consensus       149 Y~~sK~~~e~~~~~~~~~~~~-~~~~ilR~~~v~G~~~  185 (338)
T d1udca_         149 YGKSKLMVEQILTDLQKAQPD-WSIALLRYFNPVGAHP  185 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT-CEEEEEEECEEECCCT
T ss_pred             HHHHHhhhhHHHHHHHhhccC-CeEEEEeeccEEeccC
Confidence            999999999999988877532 6677777777776543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=2.6e-15  Score=130.67  Aligned_cols=216  Identities=16%  Similarity=0.107  Sum_probs=143.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh-----HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRER-----QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++|||||+|.||.++++.|.++|++|+.++|...     +++.............+.++.+|+++.+++++.++..   
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~---   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI---   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH---
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh---
Confidence            78999999999999999999999999999998532     2222222122222346889999999999998887753   


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEcCCCCCC----------C
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVASAAGWL----------P  190 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~isS~~~~~----------~  190 (287)
                        ++|++||.|+......     ..+.....+..|..+...+..++.....+..  .++++.||.....          +
T Consensus        79 --~~D~Vih~Aa~~~~~~-----~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~  151 (339)
T d1n7ha_          79 --KPDEVYNLAAQSHVAV-----SFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTP  151 (339)
T ss_dssp             --CCSEEEECCSCCCHHH-----HHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSC
T ss_pred             --ccchhhhccccccccc-----cccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCC
Confidence              7899999998754321     1244556788899999888888766543322  3555555543211          2


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC----------
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP----------  260 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  260 (287)
                      ......|+.+|.+.+.+++..++.++  +.+..++|+.+..|.....+..    ...............+          
T Consensus       152 ~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilR~~~vyGp~~~~~~~~----~~i~~~~~~~~~~~~~~~~~g~~~~~  225 (339)
T d1n7ha_         152 FHPRSPYAASKCAAHWYTVNYREAYG--LFACNGILFNHESPRRGENFVT----RKITRALGRIKVGLQTKLFLGNLQAS  225 (339)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECTTSCTTSHH----HHHHHHHHHHHHTSCCCEEESCTTCE
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhC--CCEEEEEEccccCCCCCCCCCc----chhhHHHHHHhcCCCCeEEeCCCCcc
Confidence            23467899999999999999998876  7888899988877753321100    0011111111111111          


Q ss_pred             --CCCHHHHHHHHHHhhccCC
Q 042560          261 --VQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       261 --~~~p~evA~~i~~l~~~~~  279 (287)
                        +...+|+|+++..++..+.
T Consensus       226 rd~~~v~D~a~~~~~~~~~~~  246 (339)
T d1n7ha_         226 RDWGFAGDYVEAMWLMLQQEK  246 (339)
T ss_dssp             EECEEHHHHHHHHHHHHTSSS
T ss_pred             ccceeeehHHHHHHHHHhcCC
Confidence              1238999999999988764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-14  Score=115.86  Aligned_cols=187  Identities=16%  Similarity=0.161  Sum_probs=121.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |..|+++||||+|+||.+++++|+++|++|.++.|+.+++.+.       ....+.++.+|++|.++++++++       
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-------~~~~~~~~~gD~~d~~~l~~al~-------   66 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-------GPRPAHVVVGDVLQAADVDKTVA-------   66 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-------SCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-------cccccccccccccchhhHHHHhc-------
Confidence            3567899999999999999999999999999999998875321       22358899999999998877764       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCC----Chhhhh
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPR----MSFYNA  199 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~----~~~Y~a  199 (287)
                      +.|++|+++|.....        +.    .+++..+.    +.+++.+++.+ .++|++||.......+.    ...|..
T Consensus        67 ~~d~vi~~~g~~~~~--------~~----~~~~~~~~----~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~~~~~  130 (205)
T d1hdoa_          67 GQDAVIVLLGTRNDL--------SP----TTVMSEGA----RNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTD  130 (205)
T ss_dssp             TCSEEEECCCCTTCC--------SC----CCHHHHHH----HHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHH
T ss_pred             CCCEEEEEeccCCch--------hh----hhhhHHHH----HHHHHHHHhcCCCeEEEEeeeeccCCCccccccccccch
Confidence            579999999863221        11    12333333    34444455544 69999998765443322    234555


Q ss_pred             hHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          200 SKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       200 sKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      .|.+.+.+.+    +  ..++...|.||.+...-.....     ....+      .....+.-+.+|+|+.++..+.++
T Consensus       131 ~~~~~e~~l~----~--~~~~~tiirp~~~~~~~~~~~~-----~~~~~------~~~~~~~i~~~DvA~~~~~~l~~~  192 (205)
T d1hdoa_         131 DHIRMHKVLR----E--SGLKYVAVMPPHIGDQPLTGAY-----TVTLD------GRGPSRVISKHDLGHFMLRCLTTD  192 (205)
T ss_dssp             HHHHHHHHHH----H--TCSEEEEECCSEEECCCCCSCC-----EEESS------SCSSCSEEEHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHH----h--cCCceEEEecceecCCCCcccE-----EEeeC------CCCCCCcCCHHHHHHHHHHHhCCC
Confidence            5555554332    1  2278888999988543221110     00000      011122336899999999999765

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=6.3e-15  Score=131.16  Aligned_cols=176  Identities=14%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh----------------HHHHHHHHHHhcCCCeeEEEeecCCCHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER----------------QLREVADQAELMGSPFALAIPADVSKVE  110 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~----------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~  110 (287)
                      |++++||||+|.||.+++++|+++|++|+.+|.-..                ...+.........+.++.++++|++|.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            688999999999999999999999999999873111                1122222232222346899999999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-  189 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-  189 (287)
                      .++++++..     ++|+++|.|+........  .+.+.....++.|+.++..+++.+...=  .+.++++.||..... 
T Consensus        81 ~l~~~~~~~-----~~d~ViHlAa~~~~~~s~--~~~~~~~~~~~~Nv~gt~nll~~~~~~~--~~~~~i~~ss~~~~~~  151 (393)
T d1i24a_          81 FLAESFKSF-----EPDSVVHFGEQRSAPYSM--IDRSRAVYTQHNNVIGTLNVLFAIKEFG--EECHLVKLGTMGEYGT  151 (393)
T ss_dssp             HHHHHHHHH-----CCSEEEECCSCCCHHHHT--SCHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCEEEEECCGGGGCC
T ss_pred             HHHHHHHhh-----cchheecccccccccccc--ccccccccccccccccccHHHHHHHHhc--cccceeeccccccccc
Confidence            999988754     789999999875432111  1113344578899999988888765431  123566666653321 


Q ss_pred             -----------------------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 -----------------------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 -----------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                                             +......|+.+|.+.+.+++.++++++  +++..+.|+.+..+-
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~--l~~~~lR~~~v~G~~  216 (393)
T d1i24a_         152 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVK  216 (393)
T ss_dssp             CSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECSC
T ss_pred             cccccccccccccccccccccccccccccHHHHHhhhhcccccccccccc--eeeeecccccccCCC
Confidence                                   112234699999999999999998887  677777877776653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1e-14  Score=127.24  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=140.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++|||||+|.||.+++++|+++|. +|+.+++......+..+      ..++.++.+|+++.+++.+...   +   .+|
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~------~~~~~~i~~Di~~~~~~~~~~~---~---~~d   69 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN------HPHFHFVEGDISIHSEWIEYHV---K---KCD   69 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT------CTTEEEEECCTTTCSHHHHHHH---H---HCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhcc------CCCeEEEECccCChHHHHHHHH---h---CCC
Confidence            489999999999999999999994 89999886554332221      2368999999998876655332   1   489


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----------------
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP----------------  191 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~----------------  191 (287)
                      ++||+|+......     ..+.....+..|+.+...+++.+.    +.+-+.++.||.......                
T Consensus        70 ~Vih~a~~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~~~----~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~  140 (342)
T d2blla1          70 VVLPLVAIATPIE-----YTRNPLRVFELDFEENLRIIRYCV----KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGP  140 (342)
T ss_dssp             EEEECBCCCCHHH-----HHHSHHHHHHHHTHHHHHHHHHHH----HTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCC
T ss_pred             ccccccccccccc-----cccCCccccccccccccccccccc----cccccccccccccccccccccccccccccccccc
Confidence            9999999765421     113345678899999988888763    334466777665432211                


Q ss_pred             --CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC---------
Q 042560          192 --PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP---------  260 (287)
Q Consensus       192 --~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  260 (287)
                        .....|+.+|.+.+.+++.+++.++  +.+..+.|..+..+..................+........+         
T Consensus       141 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  218 (342)
T d2blla1         141 VNKPRWIYSVSKQLLDRVIWAYGEKEG--LQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ  218 (342)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCC
T ss_pred             cCCCcchhhhcccchhhhhhhhhcccC--ceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCe
Confidence              1235799999999999999999986  677788888888775544333222222222333332221111         


Q ss_pred             ---CCCHHHHHHHHHHhhccC
Q 042560          261 ---VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       261 ---~~~p~evA~~i~~l~~~~  278 (287)
                         +...+|++++++.++..+
T Consensus       219 ~r~~i~v~D~~~a~~~~~~~~  239 (342)
T d2blla1         219 KRCFTDIRDGIEALYRIIENA  239 (342)
T ss_dssp             EEECEEHHHHHHHHHHHHHCG
T ss_pred             eeeecccccccceeeeehhhc
Confidence               224899999999999764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=6.2e-14  Score=120.95  Aligned_cols=210  Identities=12%  Similarity=0.036  Sum_probs=138.5

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      |+||||||+|.||++++++|.++|++|+.++|...... +..+.+.  ...++.++.+|++|.+.+.+.+...     ..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG--IEGDIQYEDGDMADACSVQRAVIKA-----QP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT--CGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhc--ccCCcEEEEccccChHHhhhhhccc-----cc
Confidence            78999999999999999999999999999998654211 1111111  1235889999999999988887654     56


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC------------CCCCC
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL------------PPPRM  194 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~------------~~~~~  194 (287)
                      ++++++++......     ..+.....+..|+.++..+++.+...  ..+.++++.||.. .+            +....
T Consensus        74 ~~~~~~a~~~~~~~-----~~~~~~~~~~~n~~g~~~~l~~~~~~--~~~~~~i~~Ss~~-~~~~~~~~~~~E~~~~~p~  145 (321)
T d1rpna_          74 QEVYNLAAQSFVGA-----SWNQPVTTGVVDGLGVTHLLEAIRQF--SPETRFYQASTSE-MFGLIQAERQDENTPFYPR  145 (321)
T ss_dssp             SEEEECCSCCCHHH-----HTTSHHHHHHHHTHHHHHHHHHHHHH--CTTSEEEEEEEGG-GGCSCSSSSBCTTSCCCCC
T ss_pred             cccccccccccccc-----cccchHHHHhhhhhchHHHHHHHHHh--CCCcccccccchh-hcCcccCCCCCCCCCcccc
Confidence            78888887644321     12445667889999998888877543  1124566665543 22            12245


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC------------CC
Q 042560          195 SFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP------------VQ  262 (287)
Q Consensus       195 ~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  262 (287)
                      ..|+.+|.+.+.+++.++.+++  +++..+.|+-+..|.....+...    .....+.+....+.+            +.
T Consensus       146 ~~Y~~sK~~~E~~~~~~~~~~~--~~~~~lr~~~vyGp~~~~~~~~~----~i~~~~~~~~~~~~~~i~~g~g~~~r~~i  219 (321)
T d1rpna_         146 SPYGVAKLYGHWITVNYRESFG--LHASSGILFNHESPLRGIEFVTR----KVTDAVARIKLGKQQELRLGNVDAKRDWG  219 (321)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTTSCTTSHHH----HHHHHHHHHHTTSCSCEEESCTTCEEECE
T ss_pred             ChhHHHHHHHHHHHHHHHhhcC--CcEEEEEEecccCCCccccccHH----HHHHHHHHHHhCCCCcEEECCCCeEEccE
Confidence            7899999999999999998887  66677777766666432111000    001111111111111            12


Q ss_pred             CHHHHHHHHHHhhccC
Q 042560          263 PTEECAKAIVNSACRG  278 (287)
Q Consensus       263 ~p~evA~~i~~l~~~~  278 (287)
                      ..+|+|++++.++..+
T Consensus       220 ~v~D~~~~~~~~~~~~  235 (321)
T d1rpna_         220 FAGDYVEAMWLMLQQD  235 (321)
T ss_dssp             EHHHHHHHHHHHHHSS
T ss_pred             EeHHHHHHHHHHHhcC
Confidence            3899999999998754

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.4e-14  Score=121.89  Aligned_cols=200  Identities=14%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |+++||||+|.||++++++|.++|++|+.+++......+.....  ....++.....|+.+.            ....+|
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~------------~~~~~d   67 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW--IGHENFELINHDVVEP------------LYIEVD   67 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG--TTCTTEEEEECCTTSC------------CCCCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh--cCCCceEEEehHHHHH------------HHcCCC
Confidence            78999999999999999999999999999987322211111111  1112355555555322            123689


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC----------------CC
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL----------------PP  191 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~----------------~~  191 (287)
                      ++||.|+......     ..++..+.+++|+.+...+++++..    .+.++|++||.+...                |.
T Consensus        68 ~VihlAa~~~~~~-----~~~~~~~~~~~Nv~g~~~ll~~~~~----~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~  138 (312)
T d2b69a1          68 QIYHLASPASPPN-----YMYNPIKTLKTNTIGTLNMLGLAKR----VGARLLLASTSEVYGDPEVHPQSEDYWGHVNPI  138 (312)
T ss_dssp             EEEECCSCCSHHH-----HTTCHHHHHHHHHHHHHHHHHHHHH----HTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSS
T ss_pred             EEEECcccCCchh-----HHhCHHHHHHHHHHHHHHHHHHHHH----cCCcEEEEEChheecCCCCCCCCccccCCCCCC
Confidence            9999998754321     1244566789999999888887643    234899998854321                11


Q ss_pred             CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCC-----------
Q 042560          192 PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLP-----------  260 (287)
Q Consensus       192 ~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  260 (287)
                      .+...|+.+|.+.+.+++..+++++  +.+..++|+.+..|......     . .....+..+.....+           
T Consensus       139 ~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~lR~~~vyGp~~~~~~-----~-~~i~~~i~~~~~g~~i~i~~~g~~~r  210 (312)
T d2b69a1         139 GPRACYDEGKRVAETMCYAYMKQEG--VEVRVARIFNTFGPRMHMND-----G-RVVSNFILQALQGEPLTVYGSGSQTR  210 (312)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECCEECTTCCTTC-----C-CHHHHHHHHHHHTCCEEEESSSCCEE
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeeeEECCCCCCCC-----c-cHHHHHHHHHHcCCCeEEeCCCCeeE
Confidence            2356799999999999999999886  77888999998887533210     0 011222222221111           


Q ss_pred             -CCCHHHHHHHHHHhhccC
Q 042560          261 -VQPTEECAKAIVNSACRG  278 (287)
Q Consensus       261 -~~~p~evA~~i~~l~~~~  278 (287)
                       +...+|++++++.++...
T Consensus       211 ~~i~v~D~~~~~~~~~~~~  229 (312)
T d2b69a1         211 AFQYVSDLVNGLVALMNSN  229 (312)
T ss_dssp             ECEEHHHHHHHHHHHHTSS
T ss_pred             ccEEHHHHHHHHHHHHhhc
Confidence             113899999999888654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.49  E-value=3.1e-13  Score=116.88  Aligned_cols=155  Identities=19%  Similarity=0.140  Sum_probs=111.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCC-hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARR-ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++|||||+|.||.+++++|.++|++|+++++- .....+....+...  .++.++.+|++|.+++.++++..     ++|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~--~~~~~i~~Di~~~~~l~~~~~~~-----~~d   74 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL--GNFEFVHGDIRNKNDVTRLITKY-----MPD   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc--CCcEEEEcccCCHHHHHHHHHhc-----CCc
Confidence            58999999999999999999999999998752 22222222233322  36889999999999998888654     689


Q ss_pred             EEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------------
Q 042560          128 HLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------------  190 (287)
Q Consensus       128 vli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------------  190 (287)
                      ++||+|+......     ..++....+++|+.++.++++.+...   ...+.++.||.....+                 
T Consensus        75 ~Vih~aa~~~~~~-----~~~~~~~~~~~Nv~gt~nll~~~~~~---~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~  146 (338)
T d1orra_          75 SCFHLAGQVAMTT-----SIDNPCMDFEINVGGTLNLLEAVRQY---NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCV  146 (338)
T ss_dssp             EEEECCCCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEEGGGGTTCTTSCEEECSSCEEET
T ss_pred             eEEeecccccccc-----cccChHHHHHHHHHHHHHHHHhhhcc---ccccccccccccccccccccccccccccccccc
Confidence            9999998754321     11345678889999999988876442   2245555555443222                 


Q ss_pred             -----------CCCChhhhhhHHHHHHHHHHHHHHhCCC
Q 042560          191 -----------PPRMSFYNASKAAKIALYETLRVEFGGD  218 (287)
Q Consensus       191 -----------~~~~~~Y~asKaal~~~~~~la~e~~~~  218 (287)
                                 ......|+.+|...+.+.......++..
T Consensus       147 ~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~  185 (338)
T d1orra_         147 DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLN  185 (338)
T ss_dssp             TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred             ccccCcccCCccccccccccccchhhhhhhhhhhccCcc
Confidence                       1235679999999999999999988743

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.49  E-value=6.6e-14  Score=122.05  Aligned_cols=172  Identities=17%  Similarity=0.113  Sum_probs=123.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh----HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER----QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +-|++|||||+|.||.+++++|.++|++|+.++|...    ..+.............+.++.+|..|........     
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~-----   89 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC-----   89 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH-----
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccc-----
Confidence            4578999999999999999999999999999987322    2222211111111135888999999988765443     


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------C
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------P  190 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~  190 (287)
                        ...+.++|.++......     ..++....+++|+.+...+++.+...   +..++|++||.....           +
T Consensus        90 --~~~~~v~~~~a~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~~~~~---~~~~~i~~SS~~vyg~~~~~~~~E~~~  159 (341)
T d1sb8a_          90 --AGVDYVLHQAALGSVPR-----SINDPITSNATNIDGFLNMLIAARDA---KVQSFTYAASSSTYGDHPGLPKVEDTI  159 (341)
T ss_dssp             --TTCSEEEECCSCCCHHH-----HHHCHHHHHHHHTHHHHHHHHHHHHT---TCSEEEEEEEGGGGTTCCCSSBCTTCC
T ss_pred             --ccccccccccccccccc-----cccCccchhheeehhHHHHHHHHHhc---CCceEEEcccceeeCCCCCCCccCCCC
Confidence              36788888887643221     12455678899999999998887432   225899999875432           1


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      ......|+.+|.+.+.+++.+++.++  +++..+.|+.+..+..
T Consensus       160 ~~p~~~Y~~sK~~~E~~~~~~~~~~~--i~~~ilR~~~v~G~~~  201 (341)
T d1sb8a_         160 GKPLSPYAVTKYVNELYADVFSRCYG--FSTIGLRYFNVFGRRQ  201 (341)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHC--CCCEEEEECCEECTTC
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHhC--CCeEEEEeceeeccCc
Confidence            22357899999999999999998876  6777888887776643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=1.6e-13  Score=120.50  Aligned_cols=165  Identities=18%  Similarity=0.074  Sum_probs=121.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.+++||||+|.||.+++++|.++|++|+.+++.......     ..  .....+..+|+.+.+.+.++++       .
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~-----~~--~~~~~~~~~D~~~~~~~~~~~~-------~   79 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-----ED--MFCDEFHLVDLRVMENCLKVTE-------G   79 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-----GG--GTCSEEEECCTTSHHHHHHHHT-------T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh-----hh--cccCcEEEeechhHHHHHHHhh-------c
Confidence            57779999999999999999999999999999875432100     00  1235677789998887766542       6


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC---------------
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP---------------  190 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~---------------  190 (287)
                      +|.+||.|+.......    ..+.....+..|+.+...++.++...   +-.++|++||......               
T Consensus        80 ~d~Vih~a~~~~~~~~----~~~~~~~~~~~n~~gt~~ll~~~~~~---~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e  152 (363)
T d2c5aa1          80 VDHVFNLAADMGGMGF----IQSNHSVIMYNNTMISFNMIEAARIN---GIKRFFYASSACIYPEFKQLETTNVSLKESD  152 (363)
T ss_dssp             CSEEEECCCCCCCHHH----HTTCHHHHHHHHHHHHHHHHHHHHHT---TCSEEEEEEEGGGSCGGGSSSSSSCEECGGG
T ss_pred             CCeEeecccccccccc----cccccccccccccchhhHHHHhHHhh---Ccccccccccccccccccccccccccccccc
Confidence            8999999987654221    12455667888888888777776432   2258999999765431               


Q ss_pred             ---CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          191 ---PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       191 ---~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                         ......|+.+|.+.+.+++.+.++++  +++..+.|+.+..+.
T Consensus       153 ~~~~~p~~~Yg~sK~~~E~~~~~~~~~~g--l~~~ilR~~~vyG~~  196 (363)
T d2c5aa1         153 AWPAEPQDAFGLEKLATEELCKHYNKDFG--IECRIGRFHNIYGPF  196 (363)
T ss_dssp             GSSBCCSSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEECTT
T ss_pred             CCcCCCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEEeeeEeccC
Confidence               12245799999999999999998886  778888888888764

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.8e-13  Score=117.70  Aligned_cols=153  Identities=18%  Similarity=0.193  Sum_probs=114.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      -|+++||||+|.||.+++++|+++|+.++++++..                     .+|+.+.+.+.++++.     ..+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~---------------------~~~~~~~~~~~~~~~~-----~~~   55 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------------ELNLLDSRAVHDFFAS-----ERI   55 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------------TCCTTCHHHHHHHHHH-----HCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch---------------------hccccCHHHHHHHHhh-----cCC
Confidence            36799999999999999999999999988765432                     1589999998887753     268


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC---------------
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP---------------  191 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~---------------  191 (287)
                      |+++|+++.......    ......+.++.|+.++..+++++...   +-.++|++||.+...+.               
T Consensus        56 d~v~~~a~~~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~  128 (315)
T d1e6ua_          56 DQVYLAAAKVGGIVA----NNTYPADFIYQNMMIESNIIHAAHQN---DVNKLLFLGSSCIYPKLAKQPMAESELLQGTL  128 (315)
T ss_dssp             SEEEECCCCCCCHHH----HHHCHHHHHHHHHHHHHHHHHHHHHT---TCCEEEEECCGGGSCTTCCSSBCGGGTTSSCC
T ss_pred             CEEEEcchhcccccc----chhhHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEECCceEcCCCCCCCccCCccccCCC
Confidence            999999976543211    11333456778888888887776332   12589999997754221               


Q ss_pred             -CCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          192 -PRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       192 -~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                       +....|+.+|.+.+.+++.+.++.+  +++..+.|+.+..|..
T Consensus       129 ~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ilR~~~vyGp~~  170 (315)
T d1e6ua_         129 EPTNEPYAIAKIAGIKLCESYNRQYG--RDYRSVMPTNLYGPHD  170 (315)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEESTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEeeccEECCCC
Confidence             1235699999999999999999886  7888899988887643

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=118.27  Aligned_cols=171  Identities=14%  Similarity=0.055  Sum_probs=119.1

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC------hhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARR------ERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .|++|||||+|.||.+++++|+++|++|+.+++.      .....+..+.+......++.++.+|++|.+.+++++..  
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~--   79 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK--   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccc--
Confidence            3789999999999999999999999999998741      11111122222222234689999999999999887754  


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCC---------
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLP---------  190 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~---------  190 (287)
                         ..+++++|.|+......     ..+...+.++.|+.+...+++++.    +.+ .++++.||......         
T Consensus        80 ---~~~~~i~h~Aa~~~~~~-----~~~~p~~~~~~Nv~gt~~l~~~~~----~~~v~~~i~~ss~~~~~~~~~~~~~~~  147 (346)
T d1ek6a_          80 ---YSFMAVIHFAGLKAVGE-----SVQKPLDYYRVNLTGTIQLLEIMK----AHGVKNLVFSSSATVYGNPQYLPLDEA  147 (346)
T ss_dssp             ---CCEEEEEECCSCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEEEEGGGGCSCSSSSBCTT
T ss_pred             ---cccccccccccccCcHh-----hHhCHHHHHHhhhcccccccchhh----hcCcccccccccceeeecccccccccc
Confidence               47889999999754321     113445678889988888777653    223 57888877643321         


Q ss_pred             ---CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          191 ---PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       191 ---~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                         ......|+.+|.+.+...+.+++.... .....+.|+.+..+
T Consensus       148 ~~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~-~~~~~lR~~~v~G~  191 (346)
T d1ek6a_         148 HPTGGCTNPYGKSKFFIEEMIRDLCQADKT-WNAVLLRYFNPTGA  191 (346)
T ss_dssp             SCCCCCSSHHHHHHHHHHHHHHHHHHHCTT-CEEEEEEECEEECC
T ss_pred             ccccccCChHHHHHHHHHHHHHHHHHhccC-CceEEEeecceecc
Confidence               123457999999999999988765422 55666677666554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.44  E-value=6.6e-13  Score=115.94  Aligned_cols=174  Identities=14%  Similarity=0.086  Sum_probs=125.7

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+||++|||||+|.||.++++.|.++|++|+.++|+........+....  ...+..+.+|++|.+.+.++.+..     
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~--~~~i~~~~~Dl~d~~~l~~~~~~~-----   78 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV--ADGMQSEIGDIRDQNKLLESIREF-----   78 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT--TTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc--ccCCeEEEeeccChHhhhhhhhhc-----
Confidence            4789999999999999999999999999999999987654433332221  235889999999999988887653     


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC------------CC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP------------PP  192 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~------------~~  192 (287)
                      .+|+++|.++......     ..+.....+.+|+.+...+++++...  .....+++.||......            ..
T Consensus        79 ~~~~v~~~aa~~~~~~-----~~~~~~~~~~~Nv~g~~n~l~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  151 (356)
T d1rkxa_          79 QPEIVFHMAAQPLVRL-----SYSEPVETYSTNVMGTVYLLEAIRHV--GGVKAVVNITSDKCYDNKEWIWGYRENEAMG  151 (356)
T ss_dssp             CCSEEEECCSCCCHHH-----HHHCHHHHHHHHTHHHHHHHHHHHHH--CCCCEEEEECCGGGBCCCCSSSCBCTTSCBC
T ss_pred             hhhhhhhhhccccccc-----cccCCccccccccccchhhhhhhhcc--ccccccccccccccccccccccccccccccC
Confidence            7899999998653321     12445667888999888888776542  12234555554433221            12


Q ss_pred             CChhhhhhHHHHHHHHHHHHHHhCC------C-eEEEEEeCCcccCC
Q 042560          193 RMSFYNASKAAKIALYETLRVEFGG------D-IGITIVTPGLIESE  232 (287)
Q Consensus       193 ~~~~Y~asKaal~~~~~~la~e~~~------~-i~v~~i~PG~v~t~  232 (287)
                      ....|+.+|.+.+.+++..+.++..      . +.+..+.|+-+..+
T Consensus       152 p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp  198 (356)
T d1rkxa_         152 GYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG  198 (356)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECT
T ss_pred             CCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCC
Confidence            3556999999999999998887632      2 67778888877665

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=3e-12  Score=104.91  Aligned_cols=204  Identities=16%  Similarity=0.098  Sum_probs=123.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCe--EEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRAR--LVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~--vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++||||+|.||++++++|+++|++  |+...|++++.+..        ..++..+.+|+++.++..++++       .
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~-------~   68 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--------GGEADVFIGDITDADSINPAFQ-------G   68 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--------TCCTTEEECCTTSHHHHHHHHT-------T
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc--------cCCcEEEEeeeccccccccccc-------c
Confidence            67999999999999999999999975  66677887654322        1257788999999998877663       6


Q ss_pred             ccEEEEccccCCCCCCCCCC--------CCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhh
Q 042560          126 LDHLVTNAGVVPMCLFEDYT--------DITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFY  197 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y  197 (287)
                      +|.+||+++...........        ..........+|+.+...+.......   ..+...+.++.....+......+
T Consensus        69 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~  145 (252)
T d2q46a1          69 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA---GVKHIVVVGSMGGTNPDHPLNKL  145 (252)
T ss_dssp             CSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH---TCSEEEEEEETTTTCTTCGGGGG
T ss_pred             ceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc---cccccccccccccCCCCcccccc
Confidence            89999999876432221111        01223344566666666555544332   23677777776665544433333


Q ss_pred             hhhH-HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhc
Q 042560          198 NASK-AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSAC  276 (287)
Q Consensus       198 ~asK-aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~  276 (287)
                      ...+ .........+..+.+  +++..++||.+..+.........       .............-..+|+|++++.++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~--~~~~ilRp~~v~g~~~~~~~~~~-------~~~~~~~~~~~~~i~~~Dva~a~~~~l~  216 (252)
T d2q46a1         146 GNGNILVWKRKAEQYLADSG--TPYTIIRAGGLLDKEGGVRELLV-------GKDDELLQTDTKTVPRADVAEVCIQALL  216 (252)
T ss_dssp             GGCCHHHHHHHHHHHHHHSS--SCEEEEEECEEECSCTTSSCEEE-------ESTTGGGGSSCCEEEHHHHHHHHHHHTT
T ss_pred             cccchhhhhhhhhhhhhccc--ccceeecceEEECCCcchhhhhh-------ccCcccccCCCCeEEHHHHHHHHHHHhC
Confidence            3322 233333333334433  77888999998776532211000       0000011112223358999999999887


Q ss_pred             cC
Q 042560          277 RG  278 (287)
Q Consensus       277 ~~  278 (287)
                      .+
T Consensus       217 ~~  218 (252)
T d2q46a1         217 FE  218 (252)
T ss_dssp             CG
T ss_pred             Cc
Confidence            54

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.42  E-value=1.6e-13  Score=119.81  Aligned_cols=165  Identities=17%  Similarity=0.133  Sum_probs=116.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC--h-hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARR--E-RQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~--~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      |.+|||||+|.||.+++++|.++|+.|.++.++  . .....   .+......++.++.+|++|.+.+.++++       
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~---~~~~~~~~~i~~~~~Di~d~~~~~~~~~-------   72 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA---NLEAILGDRVELVVGDIADAELVDKLAA-------   72 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG---GTGGGCSSSEEEEECCTTCHHHHHHHHT-------
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHH---HHHHhhcCCeEEEEccCCCHHHHHHHHh-------
Confidence            579999999999999999999999865444331  1 11000   1111223468999999999999888753       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC---------------
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL---------------  189 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~---------------  189 (287)
                      ..|.++|.|+.......     .++..+.+++|+.+...++..+...    +.++|++||.....               
T Consensus        73 ~~~~v~~~a~~~~~~~~-----~~~~~~~~~~N~~g~~nll~~~~~~----~~k~i~~ss~~vyg~~~~~~~~~~~~~~~  143 (346)
T d1oc2a_          73 KADAIVHYAAESHNDNS-----LNDPSPFIHTNFIGTYTLLEAARKY----DIRFHHVSTDEVYGDLPLREDLPGHGEGP  143 (346)
T ss_dssp             TCSEEEECCSCCCHHHH-----HHCCHHHHHHHTHHHHHHHHHHHHH----TCEEEEEEEGGGGCCBCCGGGSTTTTCST
T ss_pred             hhhhhhhhhhcccccch-----hhCcccceeeehHhHHhhhhhhccc----cccccccccceEecccCccccccccccCc
Confidence            56888999887654321     1334567899999999888766433    34677776654221               


Q ss_pred             --------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCC
Q 042560          190 --------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEI  233 (287)
Q Consensus       190 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~  233 (287)
                              +..+...|+.+|.+.+.+++.+.++++  +++..+.|+.+..|.
T Consensus       144 ~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~--i~~~ilR~~~vyGp~  193 (346)
T d1oc2a_         144 GEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFG--VKATISNCSNNYGPY  193 (346)
T ss_dssp             TSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECCEESTT
T ss_pred             ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHcC--CCEEEEeecceeCCC
Confidence                    111246799999999999999988875  888999999888764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-13  Score=112.06  Aligned_cols=194  Identities=16%  Similarity=0.113  Sum_probs=126.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +|++|+++||||||.||.+++++|.++|.  +|++++|++......       ....+....+|+.+.+++.+.+     
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~-------~~~~i~~~~~D~~~~~~~~~~~-----   78 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-------AYKNVNQEVVDFEKLDDYASAF-----   78 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-------GGGGCEEEECCGGGGGGGGGGG-----
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc-------ccceeeeeeecccccccccccc-----
Confidence            46789999999999999999999999996  899999976432210       0124667778887766654333     


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhH
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASK  201 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asK  201 (287)
                        ...|+++|++|.....        ........+|+.++..+++.+..   .+-.++|++|+......  ....|+.+|
T Consensus        79 --~~~d~vi~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~---~~v~~fi~~Ss~~~~~~--~~~~Y~~~K  143 (232)
T d2bkaa1          79 --QGHDVGFCCLGTTRGK--------AGAEGFVRVDRDYVLKSAELAKA---GGCKHFNLLSSKGADKS--SNFLYLQVK  143 (232)
T ss_dssp             --SSCSEEEECCCCCHHH--------HHHHHHHHHHTHHHHHHHHHHHH---TTCCEEEEECCTTCCTT--CSSHHHHHH
T ss_pred             --cccccccccccccccc--------cchhhhhhhcccccceeeecccc---cCccccccCCccccccC--ccchhHHHH
Confidence              4689999999864211        22234566788777777776532   22268999998776532  345799999


Q ss_pred             HHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC-------CCHHHHHHHHHHh
Q 042560          202 AAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV-------QPTEECAKAIVNS  274 (287)
Q Consensus       202 aal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~evA~~i~~l  274 (287)
                      ...+...+.    ++. -++..+.||.+..+.....         ..+...+......+-       -+.+|+|++++.+
T Consensus       144 ~~~E~~l~~----~~~-~~~~IlRP~~i~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~  209 (232)
T d2bkaa1         144 GEVEAKVEE----LKF-DRYSVFRPGVLLCDRQESR---------PGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNN  209 (232)
T ss_dssp             HHHHHHHHT----TCC-SEEEEEECCEEECTTGGGS---------HHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHH
T ss_pred             HHhhhcccc----ccc-cceEEecCceeecCCCcCc---------HHHHHHHHHhhccCCcccCCCeEEHHHHHHHHHHH
Confidence            888765433    232 2456789999987643211         011122222222111       1379999999988


Q ss_pred             hccC
Q 042560          275 ACRG  278 (287)
Q Consensus       275 ~~~~  278 (287)
                      +.++
T Consensus       210 ~~~~  213 (232)
T d2bkaa1         210 VVRP  213 (232)
T ss_dssp             HTSC
T ss_pred             HhcC
Confidence            7655

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=5.6e-12  Score=111.38  Aligned_cols=174  Identities=19%  Similarity=0.130  Sum_probs=121.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHH-cCCeEEEEeC---------ChhHHHHHHHHHHhc-------CCCeeEEEeecCCCHH
Q 042560           48 KVVLITGASSGIGKHLAYEYAR-RRARLVLVAR---------RERQLREVADQAELM-------GSPFALAIPADVSKVE  110 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r---------~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~  110 (287)
                      .++|||||+|.||.+++++|++ .|++|+++++         ..+..++....+...       ......++.+|++|.+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~   82 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED   82 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence            4699999999999999999986 6899999874         112223333333221       1235788899999999


Q ss_pred             HHHHHHHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-
Q 042560          111 DCKHFVDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-  189 (287)
Q Consensus       111 ~v~~~~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-  189 (287)
                      .++++++.    ..++|+++|.|+.......     .+.....++.|+.+...+++++..   ....++++.++..... 
T Consensus        83 ~l~~~~~~----~~~~d~ViH~Aa~~~~~~~-----~~~~~~~~~~N~~~t~~~l~~~~~---~~~~~~~~~~s~~~~~~  150 (383)
T d1gy8a_          83 FLNGVFTR----HGPIDAVVHMCAFLAVGES-----VRDPLKYYDNNVVGILRLLQAMLL---HKCDKIIFSSSAAIFGN  150 (383)
T ss_dssp             HHHHHHHH----SCCCCEEEECCCCCCHHHH-----HHCHHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEGGGTBS
T ss_pred             Hhhhhhhc----cceeehhhccccccccccc-----ccccccccccccccccccchhhhc---cCCcccccccccccccc
Confidence            88888754    3578999999997654321     133445677888888887777643   2224677666554321 


Q ss_pred             -----------------CCCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcC
Q 042560          190 -----------------PPPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITG  235 (287)
Q Consensus       190 -----------------~~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~  235 (287)
                                       +......|+.+|.+.+.+++.+...++  +...++.|+.+..+...
T Consensus       151 ~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~g--l~~~~lR~~~vyG~~~~  211 (383)
T d1gy8a_         151 PTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYG--IKGICLRYFNACGAHED  211 (383)
T ss_dssp             CCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHC--CEEEEEEECEEECCCTT
T ss_pred             cccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhC--CCEEEEecceeeccCcc
Confidence                             112356799999999999999998877  67777777777665543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.35  E-value=2.7e-12  Score=110.78  Aligned_cols=204  Identities=14%  Similarity=0.080  Sum_probs=136.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeE------EEEeCChhHH-HHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARL------VLVARRERQL-REVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~v------v~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++||||+|.||.+++++|.++|+.|      +..++..... .......  ....++.++..|.++........     
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~-----   74 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV--DADPRLRFVHGDIRDAGLLAREL-----   74 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG--TTCTTEEEEECCTTCHHHHHHHT-----
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhh--hcCCCeEEEEeccccchhhhccc-----
Confidence            48999999999999999999999754      4443321110 0000111  11236889999999988765443     


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------  190 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------  190 (287)
                        ...|.++|.|+......     ..+...+.+++|+.+...+++++...   +..++|++||.....+           
T Consensus        75 --~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~N~~gt~~ll~~~~~~---~~~~~I~~Ss~~~yg~~~~~~~~E~~~  144 (322)
T d1r6da_          75 --RGVDAIVHFAAESHVDR-----SIAGASVFTETNVQGTQTLLQCAVDA---GVGRVVHVSTNQVYGSIDSGSWTESSP  144 (322)
T ss_dssp             --TTCCEEEECCSCCCHHH-----HHHCCHHHHHHHTHHHHHHHHHHHHT---TCCEEEEEEEGGGGCCCSSSCBCTTSC
T ss_pred             --cccceEEeecccccccc-----cccchHHHhhhhHHHHHHHHHHHHHc---CCceEEEeecceeecCCCCCCCCCCCC
Confidence              37899999998754321     12445667889999999988887432   2358999988765422           


Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCC---------
Q 042560          191 PPRMSFYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPV---------  261 (287)
Q Consensus       191 ~~~~~~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  261 (287)
                      ..+...|+.+|.+.+.+++.++++++  +.+..+.|+.+..|....     +   .....+.++.....++         
T Consensus       145 ~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~lR~~~vyGp~~~~-----~---~~i~~~i~~~~~~~~i~v~~~g~~~  214 (322)
T d1r6da_         145 LEPNSPYAASKAGSDLVARAYHRTYG--LDVRITRCCNNYGPYQHP-----E---KLIPLFVTNLLDGGTLPLYGDGANV  214 (322)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHC--CCEEEEEECEEECTTCCT-----T---SHHHHHHHHHHTTCCEEEETTSCCE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhC--CCEEEEEeeeEECcCCCc-----C---cHHHHHHHHHHcCCCcEEecCCCeE
Confidence            12346799999999999999999886  788888998888764221     0   1122233322222221         


Q ss_pred             ---CCHHHHHHHHHHhhccCC
Q 042560          262 ---QPTEECAKAIVNSACRGD  279 (287)
Q Consensus       262 ---~~p~evA~~i~~l~~~~~  279 (287)
                         ...+|+|++++.++....
T Consensus       215 r~~i~v~D~a~ai~~~~~~~~  235 (322)
T d1r6da_         215 REWVHTDDHCRGIALVLAGGR  235 (322)
T ss_dssp             EEEEEHHHHHHHHHHHHHHCC
T ss_pred             EccEEHHHHHHHHHHHHhCCC
Confidence               138999999999998753

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.09  E-value=2.9e-10  Score=91.79  Aligned_cols=190  Identities=17%  Similarity=0.112  Sum_probs=114.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .|+++||||||.||++++++|.++|+  +|++..|++...           ..+   +..+..|..++..      ...+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-----------~~~---~~~~~~d~~~~~~------~~~~   61 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----------HPR---LDNPVGPLAELLP------QLDG   61 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----------CTT---EECCBSCHHHHGG------GCCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-----------ccc---ccccccchhhhhh------cccc
Confidence            48999999999999999999999997  677777754220           012   2344444433211      2235


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAA  203 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  203 (287)
                      .+|.+|+++|.....       ....+...+.|+.++..+++.+.    +.+ .+++++||..+..  .....|..+|..
T Consensus        62 ~~d~vi~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~----~~~v~~~i~~Ss~~~~~--~~~~~y~~~K~~  128 (212)
T d2a35a1          62 SIDTAFCCLGTTIKE-------AGSEEAFRAVDFDLPLAVGKRAL----EMGARHYLVVSALGADA--KSSIFYNRVKGE  128 (212)
T ss_dssp             CCSEEEECCCCCHHH-------HSSHHHHHHHHTHHHHHHHHHHH----HTTCCEEEEECCTTCCT--TCSSHHHHHHHH
T ss_pred             chheeeeeeeeeccc-------cccccccccchhhhhhhcccccc----ccccccccccccccccc--ccccchhHHHHH
Confidence            789999999864321       12234567778888777777653    233 6899999876642  235679999988


Q ss_pred             HHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCCCCCCHHHHHHHHHHhhccCC
Q 042560          204 KIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLLPVQPTEECAKAIVNSACRGD  279 (287)
Q Consensus       204 l~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~~  279 (287)
                      .+...+    +... -+...++|+.+..+.........- ......-...++    +.-..+|+|++++.++.++.
T Consensus       129 ~E~~l~----~~~~-~~~~I~Rp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~----~~i~v~DvA~ai~~~~~~~~  194 (212)
T d2a35a1         129 LEQALQ----EQGW-PQLTIARPSLLFGPREEFRLAEIL-AAPIARILPGKY----HGIEACDLARALWRLALEEG  194 (212)
T ss_dssp             HHHHHT----TSCC-SEEEEEECCSEESTTSCEEGGGGT-TCCCC----CHH----HHHHHHHHHHHHHHHHTCCC
T ss_pred             Hhhhcc----cccc-ccceeeCCcceeCCcccccHHHHH-HHHHhhccCCCC----cEEEHHHHHHHHHHHHcCCC
Confidence            776543    2221 256778999997764321000000 000000000000    00137999999999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.06  E-value=6.4e-10  Score=94.23  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH-HHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR-EVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++++||||+|.||++++++|.++|++|+++.|+..... ...+.........+.++.+|++|.+++.+.++       ..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~-------~~   76 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK-------QV   76 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT-------TC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc-------Cc
Confidence            34899999999999999999999999999999654211 11111111112358899999999988876653       56


Q ss_pred             cEEEEcccc
Q 042560          127 DHLVTNAGV  135 (287)
Q Consensus       127 dvli~nag~  135 (287)
                      +.++++++.
T Consensus        77 ~~~~~~~~~   85 (312)
T d1qyda_          77 DVVISALAG   85 (312)
T ss_dssp             SEEEECCCC
T ss_pred             chhhhhhhh
Confidence            888888865

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.02  E-value=2.1e-09  Score=90.34  Aligned_cols=200  Identities=13%  Similarity=-0.013  Sum_probs=108.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH--HHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR--EVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      -|+++||||+|.||++++++|.++|++|++++|+.....  +............+.++.+|+.+.+...+.++       
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------   75 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK-------   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH-------
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh-------
Confidence            467999999999999999999999999999999654321  11122222112347888999999988766654       


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      ..+.++++++....                    .+...+.+++..   .....+++.||............+...+...
T Consensus        76 ~~~~vi~~~~~~~~--------------------~~~~~~~~a~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  132 (307)
T d1qyca_          76 NVDVVISTVGSLQI--------------------ESQVNIIKAIKE---VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEV  132 (307)
T ss_dssp             TCSEEEECCCGGGS--------------------GGGHHHHHHHHH---HCCCSEEECSCCSSCTTSCCCCTTHHHHHHH
T ss_pred             hceeeeeccccccc--------------------chhhHHHHHHHH---hccccceeeeccccccccccccccccccccc
Confidence            56888888764211                    111222222211   1234566666654433333333344444433


Q ss_pred             HHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCcc-chHHHHhhhhcCCCCCCHHHHHHHHHHhhccC
Q 042560          205 IALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLE-VDQEIRDVQISLLPVQPTEECAKAIVNSACRG  278 (287)
Q Consensus       205 ~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~evA~~i~~l~~~~  278 (287)
                      .........+.+  +....+.|+.+..+.............. .............++...+|+|++++.++.++
T Consensus       133 ~~~~~~~~~~~~--~~~~i~r~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~  205 (307)
T d1qyca_         133 KAKVRRAIEAEG--IPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP  205 (307)
T ss_dssp             HHHHHHHHHHHT--CCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred             cccccchhhccC--CCceecccceecCCCccchhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcCh
Confidence            333444444444  4556678877765432211100000000 00000000001112235999999999999754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.02  E-value=8.7e-14  Score=111.29  Aligned_cols=182  Identities=12%  Similarity=0.091  Sum_probs=90.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++.|+||+|++|+++|+.|++.|++|++.+|++++++++.+++........ ....|..+..............+..+|.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDAS-ITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCC-EEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCce-EEeeccccccchhhhhhhheeeeccchH
Confidence            366778889999999999999999999999999999999988866432212 1222211111100000000000001111


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC-CEEEEEcCCCCCCCCCCChhhhhhHHHHHHH
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK-GKIIVVASAAGWLPPPRMSFYNASKAAKIAL  207 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  207 (287)
                      +.++............ +..........+..+.....+...+.+.... ...+++.|.....+......|...+++....
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  159 (212)
T d1jaya_          81 ARDLKNILREKIVVSP-LVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDE  159 (212)
T ss_dssp             HHHTHHHHTTSEEEEC-CCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHH
T ss_pred             HHHhhhhhcccccccc-ccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCcccccCccceEEeCCHH
Confidence            1111111111111110 1112222222222222233344444444322 2222233333222334445566667766777


Q ss_pred             HHHHHHHhCCC-eEEEEEeCCcccCC
Q 042560          208 YETLRVEFGGD-IGITIVTPGLIESE  232 (287)
Q Consensus       208 ~~~la~e~~~~-i~v~~i~PG~v~t~  232 (287)
                      ++..+.++..+ +.++.+.||.+++.
T Consensus       160 a~~~~~~~~~~~~g~~~~~~G~l~~a  185 (212)
T d1jaya_         160 SKKVVMSLISEIDGLRPLDAGPLSNS  185 (212)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEESGGGH
T ss_pred             HHHHHHHHHhhCCCeEEEEeChHHHH
Confidence            77777665544 77889999988764

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.00  E-value=4.4e-10  Score=94.75  Aligned_cols=128  Identities=16%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      ++|||||+|-||.++++.|.++|.. +.++++...                  +.+|++|.+.++++++..     ++|+
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~------------------~~~Dl~~~~~~~~~i~~~-----~~D~   57 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKE------------------FCGDFSNPKGVAETVRKL-----RPDV   57 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSS------------------SCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcc------------------ccCcCCCHHHHHHHHHHc-----CCCE
Confidence            4899999999999999999999864 444443321                  347999999998888654     6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~~Y  197 (287)
                      +||+||......     ..+.....++.|+.+...+.+++    ++.+.+++++||.....+           ......|
T Consensus        58 Vih~Aa~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y  128 (298)
T d1n2sa_          58 IVNAAAHTAVDK-----AESEPELAQLLNATSVEAIAKAA----NETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVY  128 (298)
T ss_dssp             EEECCCCCCHHH-----HTTCHHHHHHHHTHHHHHHHHHH----TTTTCEEEEEEEGGGSCCCTTCCBCTTSCCCCSSHH
T ss_pred             EEEecccccccc-----cccCccccccccccccccchhhh----hccccccccccccccccCCCCCCCccccccCCCchH
Confidence            999999764321     12444567788888877777765    334467778777654322           1234679


Q ss_pred             hhhHHHHHHHHH
Q 042560          198 NASKAAKIALYE  209 (287)
Q Consensus       198 ~asKaal~~~~~  209 (287)
                      +.+|.+.+.+.+
T Consensus       129 ~~~k~~~e~~~~  140 (298)
T d1n2sa_         129 GKTKLAGEKALQ  140 (298)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHH
Confidence            999988876554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.96  E-value=2.8e-09  Score=89.08  Aligned_cols=178  Identities=13%  Similarity=0.133  Sum_probs=113.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      +++||||+|.||.+++++|.++|++|+.++|+.                      .|++|.++++++++..     ++|+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------------~D~~d~~~~~~~l~~~-----~~d~   55 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------------LDITNVLAVNKFFNEK-----KPNV   55 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------------CCTTCHHHHHHHHHHH-----CCSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------------ccCCCHHHHHHHHHHc-----CCCE
Confidence            489999999999999999999999999998853                      4899999998887654     6899


Q ss_pred             EEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCC-----------CCCCChhh
Q 042560          129 LVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWL-----------PPPRMSFY  197 (287)
Q Consensus       129 li~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~-----------~~~~~~~Y  197 (287)
                      +||+++.......     ..........|......+.....    .....+++.||.....           +......|
T Consensus        56 vih~a~~~~~~~~-----~~~~~~~~~~n~~~~~~~~~~~~----~~~~~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~  126 (281)
T d1vl0a_          56 VINCAAHTAVDKC-----EEQYDLAYKINAIGPKNLAAAAY----SVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSAY  126 (281)
T ss_dssp             EEECCCCCCHHHH-----HHCHHHHHHHHTHHHHHHHHHHH----HHTCEEEEEEEGGGSCSCCSSCBCTTSCCCCCSHH
T ss_pred             EEeeccccccccc-----cccchhhcccccccccccccccc----cccccccccccceeeeccccccccccccccchhhh
Confidence            9999987543211     12233445556555554444432    2234566666543221           22345679


Q ss_pred             hhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCCCcCCcccCcCCCccchHHHHhhhhcCC----------CCCCHHHH
Q 042560          198 NASKAAKIALYETLRVEFGGDIGITIVTPGLIESEITGGKFLNKNGKLEVDQEIRDVQISLL----------PVQPTEEC  267 (287)
Q Consensus       198 ~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ev  267 (287)
                      +.+|.+.+.+.+    ++.  .+...+.|+.+..+-..-           ...+........          .....+|+
T Consensus       127 ~~~k~~~e~~~~----~~~--~~~~i~R~~~vyG~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  189 (281)
T d1vl0a_         127 GKTKLEGENFVK----ALN--PKYYIVRTAWLYGDGNNF-----------VKTMINLGKTHDELKVVHDQVGTPTSTVDL  189 (281)
T ss_dssp             HHHHHHHHHHHH----HHC--SSEEEEEECSEESSSSCH-----------HHHHHHHHHHCSEEEEESSCEECCEEHHHH
T ss_pred             hhhhhHHHHHHH----HhC--CCccccceeEEeCCCccc-----------ccchhhhhccCCceeecCCceeccchhhhh
Confidence            999988776543    333  345568888887653210           112222111111          12248999


Q ss_pred             HHHHHHhhccCC
Q 042560          268 AKAIVNSACRGD  279 (287)
Q Consensus       268 A~~i~~l~~~~~  279 (287)
                      ++++..++....
T Consensus       190 ~~~~~~~~~~~~  201 (281)
T d1vl0a_         190 ARVVLKVIDEKN  201 (281)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             hhhhhhhhhhcc
Confidence            999999987653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=98.81  E-value=1.1e-08  Score=88.58  Aligned_cols=150  Identities=12%  Similarity=0.006  Sum_probs=92.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHH-HHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDC-KHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v-~~~~~~~~~~~~  124 (287)
                      +.|+++||||||.||.+++++|.++|++|+++.|+.+....  ......  ..+..+.+|+.|..+. +.+       ..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~~--~~v~~~~gD~~d~~~~~~~a-------~~   70 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAI--PNVTLFQGPLLNNVPLMDTL-------FE   70 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTS--TTEEEEESCCTTCHHHHHHH-------HT
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhccc--CCCEEEEeeCCCcHHHHHHH-------hc
Confidence            56899999999999999999999999999999998765432  222222  2488999999986553 222       24


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC--CCChhhhhhHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPP--PRMSFYNASKA  202 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~--~~~~~Y~asKa  202 (287)
                      ..|.++.+.....                 ..++.....++.++.   ..+..++++.||.......  .....|..+|.
T Consensus        71 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~aa~---~agv~~~v~~Ss~~~~~~~~~~~~~~~~~~k~  130 (350)
T d1xgka_          71 GAHLAFINTTSQA-----------------GDEIAIGKDLADAAK---RAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKF  130 (350)
T ss_dssp             TCSEEEECCCSTT-----------------SCHHHHHHHHHHHHH---HHSCCSEEEEEECCCGGGTSSCCCCTTTHHHH
T ss_pred             CCceEEeeccccc-----------------chhhhhhhHHHHHHH---HhCCCceEEEeeccccccCCcccchhhhhhHH
Confidence            6677776643210                 112222333333332   2222567777776554322  23445667776


Q ss_pred             HHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          203 AKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       203 al~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      ..+.+.+.    ..  +....+.||.+..+
T Consensus       131 ~~~~~~~~----~~--~~~~~vr~~~~~~~  154 (350)
T d1xgka_         131 TVENYVRQ----LG--LPSTFVYAGIYNNN  154 (350)
T ss_dssp             HHHHHHHT----SS--SCEEEEEECEEGGG
T ss_pred             HHHHHHHh----hc--cCceeeeeceeecc
Confidence            65554332    22  55666778776554

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=5.3e-08  Score=81.81  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=93.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH--hcCCc
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME--HFGRL  126 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~~i  126 (287)
                      +|||||+|.||.+++++|+++|+ .|+++++-....+ ... ....       ..+|..+.+.   ..+....  .....
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~-~~~-~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~   69 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVN-LVDL-------NIADYMDKED---FLIQIMAGEEFGDV   69 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHH-HHTS-------CCSEEEEHHH---HHHHHHTTCCCSSC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch-hhc-cccc-------chhhhccchH---HHHHHhhhhcccch
Confidence            79999999999999999999997 6777764222111 111 1110       1122222222   3333332  23567


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----------CCCCh
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP-----------PPRMS  195 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~-----------~~~~~  195 (287)
                      ++++|.|+.....       ........+.|+.+...+.+.+..    .+-++++.||.....+           .+...
T Consensus        70 ~~i~~~aa~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~----~~i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~  138 (307)
T d1eq2a_          70 EAIFHEGACSSTT-------EWDGKYMMDNNYQYSKELLHYCLE----REIPFLYASSAATYGGRTSDFIESREYEKPLN  138 (307)
T ss_dssp             CEEEECCSCCCTT-------CCCHHHHHHHTHHHHHHHHHHHHH----HTCCEEEEEEGGGGTTCCSCBCSSGGGCCCSS
T ss_pred             hhhhhhccccccc-------cccccccccccccccccccccccc----cccccccccccccccccccccccccccccccc
Confidence            8888888753321       123344556667666666555433    2324555544443321           23456


Q ss_pred             hhhhhHHHHHHHHHHHHHHhCCCeEEEEEeCCcccCC
Q 042560          196 FYNASKAAKIALYETLRVEFGGDIGITIVTPGLIESE  232 (287)
Q Consensus       196 ~Y~asKaal~~~~~~la~e~~~~i~v~~i~PG~v~t~  232 (287)
                      .|+.+|.+.+.+++.++.+++  +.+..+.|..+..|
T Consensus       139 ~Y~~~K~~~e~~~~~~~~~~~--~~~~~~r~~~vyGp  173 (307)
T d1eq2a_         139 VYGYSKFLFDEYVRQILPEAN--SQIVGFRYFNVYGP  173 (307)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCS--SCEEEEEECEEESS
T ss_pred             ccccccchhhhhccccccccc--cccccccceeEeec
Confidence            799999999999999988876  45555666665554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.8e-05  Score=60.43  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHH---HHHhcCCCeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVAD---QAELMGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ..++++|+++|.|+ ||.|++++..|.+.|. ++.+..|+.+..+++..   .+.....  ......|+.+.+++.....
T Consensus        13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   89 (182)
T d1vi2a1          13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTD--CVVTVTDLADQQAFAEALA   89 (182)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS--CEEEEEETTCHHHHHHHHH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcC--cceEeeecccccchhhhhc
Confidence            34789999999999 6999999999999998 78899998776665444   3333332  4455688888877655542


Q ss_pred             HHHHhcCCccEEEEccccC
Q 042560          118 VTMEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~  136 (287)
                             ..|++||+....
T Consensus        90 -------~~diiIN~Tp~G  101 (182)
T d1vi2a1          90 -------SADILTNGTKVG  101 (182)
T ss_dssp             -------TCSEEEECSSTT
T ss_pred             -------ccceeccccCCc
Confidence                   679999998754

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.97  E-value=1.5e-05  Score=61.85  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=57.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+||+|.+.+.-....|++|+.+++++++.+..    +..+.. .   ..|-.+++..++..+...  ..+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~----~~~Ga~-~---vi~~~~~~~~~~~~~~~~--~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL----KQIGFD-A---AFNYKTVNSLEEALKKAS--PDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCS-E---EEETTSCSCHHHHHHHHC--TTC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH----Hhhhhh-h---hcccccccHHHHHHHHhh--cCC
Confidence            699999999999999999999999999999999988775433    333432 2   234444444444433322  247


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.+.|.
T Consensus        99 vd~v~D~vG~  108 (182)
T d1v3va2          99 YDCYFDNVGG  108 (182)
T ss_dssp             EEEEEESSCH
T ss_pred             CceeEEecCc
Confidence            9999999974

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.3e-05  Score=59.39  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|...+......|++|+++++++++.+.+    +..+.+.    ..|.++++-.+++.+....  .+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~----~~~Ga~~----vi~~~~~~~~~~i~~~t~~--~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV----LQNGAHE----VFNHREVNYIDKIKKYVGE--KG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCSE----EEETTSTTHHHHHHHHHCT--TC
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccc----cccCccc----ccccccccHHHHhhhhhcc--CC
Confidence            688999999999999999998888999999999887765433    2334332    2466665544443333221  36


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.++|
T Consensus        98 ~d~v~d~~g  106 (174)
T d1yb5a2          98 IDIIIEMLA  106 (174)
T ss_dssp             EEEEEESCH
T ss_pred             ceEEeeccc
Confidence            899998876

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.84  E-value=3.6e-05  Score=59.44  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|.+++|+||+||.|...+.-....|++|+.+++++++.+...    ..+.+.+    .|-.+.  ..+..+.+  ..+
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~lGa~~v----i~~~~~--~~~~~~~~--~~~   97 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAKEV----LAREDV--MAERIRPL--DKQ   97 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCSEE----EECC-----------C--CSC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hccccee----eecchh--HHHHHHHh--hcc
Confidence            35889999999999999988888889999999999988865443    2333222    232211  12222211  225


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLP  190 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~  190 (287)
                      ++|+++.+.|...            +               ...+..++. +|+++.++...+..+
T Consensus        98 gvD~vid~vgg~~------------~---------------~~~l~~l~~-~Griv~~G~~~g~~~  135 (176)
T d1xa0a2          98 RWAAAVDPVGGRT------------L---------------ATVLSRMRY-GGAVAVSGLTGGAEV  135 (176)
T ss_dssp             CEEEEEECSTTTT------------H---------------HHHHHTEEE-EEEEEECSCCSSSCC
T ss_pred             CcCEEEEcCCchh------------H---------------HHHHHHhCC-CceEEEeecccCccc
Confidence            7999999998511            1               222333443 689999888766544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=7.5e-05  Score=57.45  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=57.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|...+.-....|++|+.+++++++.+...+    .+.+    ...|.++++-.+++. ++.+ -..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~----~vi~~~~~d~~~~v~-~~t~-g~g   97 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW----QVINYREEDLVERLK-EITG-GKK   97 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHH-HHTT-TCC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe----EEEECCCCCHHHHHH-HHhC-CCC
Confidence            58899999999999999999988999999999999998765432    2322    234666654444432 2221 246


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.+.|.
T Consensus        98 ~d~v~d~~g~  107 (179)
T d1qora2          98 VRVVYDSVGR  107 (179)
T ss_dssp             EEEEEECSCG
T ss_pred             eEEEEeCccH
Confidence            8999998874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.81  E-value=4.5e-05  Score=58.34  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=54.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++|.++|.|| |.+|+.+|+.|+++|++|++.+|+.++.++..+..    . .......+..+.......+.       .
T Consensus         1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----~-~~~~~~~~~~~~~~~~~~i~-------~   67 (182)
T d1e5qa1           1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----Q-HSTPISLDVNDDAALDAEVA-------K   67 (182)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----T-TEEEEECCTTCHHHHHHHHT-------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----c-ccccccccccchhhhHhhhh-------c
Confidence            4789999988 99999999999999999999999999888766543    2 24444455555555544432       4


Q ss_pred             ccEEEEcc
Q 042560          126 LDHLVTNA  133 (287)
Q Consensus       126 idvli~na  133 (287)
                      .|.++...
T Consensus        68 ~~~~i~~~   75 (182)
T d1e5qa1          68 HDLVISLI   75 (182)
T ss_dssp             SSEEEECS
T ss_pred             cceeEeec
Confidence            56666544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=5.3e-05  Score=58.52  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc--
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF--  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~--  123 (287)
                      +|.+++|+||+|++|...+......|++++++.++.++.+.    ++..+.+    ...|-.+++-.++    +.+..  
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~----l~~~Ga~----~vi~~~~~~~~~~----v~~~t~~   92 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM----LSRLGVE----YVGDSRSVDFADE----ILELTDG   92 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH----HHTTCCS----EEEETTCSTHHHH----HHHHTTT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc----ccccccc----ccccCCccCHHHH----HHHHhCC
Confidence            58899999999999999999888899999999998776543    3333432    2235455433333    33322  


Q ss_pred             CCccEEEEccc
Q 042560          124 GRLDHLVTNAG  134 (287)
Q Consensus       124 ~~idvli~nag  134 (287)
                      .++|+++.++|
T Consensus        93 ~g~d~v~d~~g  103 (183)
T d1pqwa_          93 YGVDVVLNSLA  103 (183)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCEEEEEeccc
Confidence            36999999887

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.75  E-value=5.8e-05  Score=58.84  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCCE-EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH-hc
Q 042560           46 AGKV-VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME-HF  123 (287)
Q Consensus        46 ~~k~-alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~-~~  123 (287)
                      +|.+ ++++||+||+|.+.+.-.-..|++|+.+.|+.++.++..+.++..+.+.+.  ..|-.+..+..+.+.++.+ ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi--~~~~~~~~~~~~~v~~~~~~~g  105 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI--TEDQNNSREFGPTIKEWIKQSG  105 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE--EHHHHHCGGGHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEE--eccccchhHHHHHHHHHHhhcc
Confidence            4554 445799999999998888888999999999888888777777777654322  2221122233333444433 34


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.+.|.
T Consensus       106 ~~vdvv~D~vg~  117 (189)
T d1gu7a2         106 GEAKLALNCVGG  117 (189)
T ss_dssp             CCEEEEEESSCH
T ss_pred             CCceEEEECCCc
Confidence            579999998763

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.70  E-value=0.00012  Score=55.33  Aligned_cols=73  Identities=22%  Similarity=0.334  Sum_probs=56.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++++.++|.|+ |++|..+++.|...|+ ++.++.|+.++.+++.+++.      ...     .+.+++.+.+      
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~------~~~-----~~~~~~~~~l------   82 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG------GEA-----VRFDELVDHL------   82 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT------CEE-----CCGGGHHHHH------
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh------ccc-----ccchhHHHHh------
Confidence            679999999998 9999999999999998 68899999988887777652      122     1233443333      


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                       ...|++|++.+.
T Consensus        83 -~~~Divi~atss   94 (159)
T d1gpja2          83 -ARSDVVVSATAA   94 (159)
T ss_dssp             -HTCSEEEECCSS
T ss_pred             -ccCCEEEEecCC
Confidence             267999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.0001  Score=56.36  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+++||.++|.|+ ||-+++++..|.+.|.++.++.|+.++.+++.+.+...+  .+.....|  +.            
T Consensus        13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~~~~~--~~------------   75 (170)
T d1nyta1          13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQALSMD--EL------------   75 (170)
T ss_dssp             TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEECCSG--GG------------
T ss_pred             CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--cccccccc--cc------------
Confidence            35678999999998 899999999999999999999999999988887775543  23332222  11            


Q ss_pred             hcCCccEEEEccccCC
Q 042560          122 HFGRLDHLVTNAGVVP  137 (287)
Q Consensus       122 ~~~~idvli~nag~~~  137 (287)
                      .....|++||+.....
T Consensus        76 ~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          76 EGHEFDLIINATSSGI   91 (170)
T ss_dssp             TTCCCSEEEECCSCGG
T ss_pred             cccccceeecccccCc
Confidence            1136799999986553

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.63  E-value=0.00015  Score=55.18  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-C
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-G  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-~  124 (287)
                      +|.+++|+| +|++|...+..+...|++|+++++++++++.+.+    .+.. . .+..|- ..++.....+++.+.. +
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~----~ga~-~-~~~~~~-~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD-V-TLVVDP-AKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS-E-EEECCT-TTSCHHHHHHHHHHHSSS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH----cCCc-E-EEeccc-cccccchhhhhhhccccc
Confidence            577899997 5899999998888899999999999998764433    2222 2 222232 2233444455555554 4


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      .+|++|.++|.
T Consensus        98 g~D~vid~~g~  108 (170)
T d1e3ja2          98 LPNVTIDCSGN  108 (170)
T ss_dssp             CCSEEEECSCC
T ss_pred             CCceeeecCCC
Confidence            68999999984

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=0.00011  Score=53.73  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=55.7

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|.|+ |-+|+.+++.|.+.|++|++++.+++..++..++.      ...++..|.+|++.++++-      ....|.
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~------i~~a~~   68 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAG------IEDADM   68 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTT------TTTCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcC------hhhhhh
Confidence            5889998 99999999999999999999999999887765432      2567889999988776551      134566


Q ss_pred             EEEc
Q 042560          129 LVTN  132 (287)
Q Consensus       129 li~n  132 (287)
                      ++..
T Consensus        69 vv~~   72 (132)
T d1lssa_          69 YIAV   72 (132)
T ss_dssp             EEEC
T ss_pred             hccc
Confidence            6554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=0.00025  Score=54.24  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .++++|.++|.|+ ||-+++++..|.+.+.++.++.|+.++.++..+.+....  .+.....|-.              .
T Consensus        14 ~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~~--------------~   76 (171)
T d1p77a1          14 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDSI--------------P   76 (171)
T ss_dssp             CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGGC--------------C
T ss_pred             CCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhccc--------------c
Confidence            3678999999988 788999999999988899999999999998888876543  3444444421              1


Q ss_pred             cCCccEEEEccccCC
Q 042560          123 FGRLDHLVTNAGVVP  137 (287)
Q Consensus       123 ~~~idvli~nag~~~  137 (287)
                      ....|++||++...-
T Consensus        77 ~~~~diiIN~tp~g~   91 (171)
T d1p77a1          77 LQTYDLVINATSAGL   91 (171)
T ss_dssp             CSCCSEEEECCCC--
T ss_pred             ccccceeeecccccc
Confidence            246899999987653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00053  Score=52.70  Aligned_cols=80  Identities=20%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  123 (287)
                      +|.+++|+|| |++|...+..+...|+ +|+++++++++++-. ++   .+.+  .+  .|.++. +..+..+++.+.. 
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~---lGa~--~v--i~~~~~-~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EE---IGAD--LT--LNRRET-SVEERRKAIMDITH   97 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HH---TTCS--EE--EETTTS-CHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-cc---ccce--EE--Eecccc-chHHHHHHHHHhhC
Confidence            6899999997 7999999999989998 799999999987643 22   2322  12  243332 2223333344432 


Q ss_pred             -CCccEEEEcccc
Q 042560          124 -GRLDHLVTNAGV  135 (287)
Q Consensus       124 -~~idvli~nag~  135 (287)
                       .++|++|.++|.
T Consensus        98 ~~g~Dvvid~vG~  110 (182)
T d1vj0a2          98 GRGADFILEATGD  110 (182)
T ss_dssp             TSCEEEEEECSSC
T ss_pred             CCCceEEeecCCc
Confidence             359999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=0.00034  Score=53.37  Aligned_cols=74  Identities=23%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|+||+|++|...+......|++|+.+++++++.+...    ..+.+.+    .|..+.  .    ++.. ..++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~----~lGa~~~----i~~~~~--~----~~~~-~~~g   91 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL----ALGAEEA----ATYAEV--P----ERAK-AWGG   91 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH----HTTCSEE----EEGGGH--H----HHHH-HTTS
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccccccccc----cccccee----eehhhh--h----hhhh-cccc
Confidence            7999999999999999999888888999999999887765433    2333222    243322  1    2222 2357


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      +|+++.+.|
T Consensus        92 ~D~v~d~~G  100 (171)
T d1iz0a2          92 LDLVLEVRG  100 (171)
T ss_dssp             EEEEEECSC
T ss_pred             ccccccccc
Confidence            999998765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00023  Score=46.70  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|+||+||.|.....-+...|++|+.+.+++++.+-+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            688899999999999999987788899999999998876644

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0015  Score=49.40  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc-
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF-  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  123 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+++++++++++-.. +   .+.+  ..+..+-.+.++..+   .+.... 
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~---~Ga~--~~~~~~~~~~~~~~~---~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-E---IGAD--LVLQISKESPQEIAR---KVEGQLG   95 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-H---TTCS--EEEECSSCCHHHHHH---HHHHHHT
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-H---hCCc--ccccccccccccccc---cccccCC
Confidence            5778999987 9999999999989999 7999999988876432 2   2322  222233334444333   333333 


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      .++|++|.++|.
T Consensus        96 ~g~Dvvid~~G~  107 (171)
T d1pl8a2          96 CKPEVTIECTGA  107 (171)
T ss_dssp             SCCSEEEECSCC
T ss_pred             CCceEEEeccCC
Confidence            478999999984

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.27  E-value=0.00072  Score=51.24  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=55.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.+++|.|++|++|..++..+...|+ +|+++++++++.+...+    .+.+    ...|.++++-.++..+...  -+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~~~--~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD----YVINASMQDPLAEIRRITE--SK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHTT--TS
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc----eeeccCCcCHHHHHHHHhh--cc
Confidence            688999999999999999999988885 88899998877654432    2322    2234454444444433221  14


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      .+|+++.++|.
T Consensus        97 ~~d~vid~~g~  107 (170)
T d1jvba2          97 GVDAVIDLNNS  107 (170)
T ss_dssp             CEEEEEESCCC
T ss_pred             cchhhhccccc
Confidence            69999999874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.18  E-value=0.0065  Score=44.72  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC--CeEEEEeCChhHHHHHHHHHHhc--CCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR--ARLVLVARRERQLREVADQAELM--GSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G--~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++++.|.|+ |.+|.++|..|+.+|  .++++++++++..+.....++..  ..........|   .++          
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d---~~~----------   69 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE---YSD----------   69 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC---GGG----------
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc---HHH----------
Confidence            3557888896 899999999999998  48999999988776555555431  11223333344   222          


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                       ...-|++|.++|......       +.-.+.+..|    ..+.+...+.+.+..  +.++++|
T Consensus        70 -~~~adivvitag~~~~~g-------~~r~~l~~~N----~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          70 -CKDADLVVITAGAPQKPG-------ESRLDLVNKN----LNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             -GTTCSEEEECCCC-----------------CHHHH----HHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             -hccccEEEEecccccCCC-------CCHHHHHHHH----HHHHHHHHHHHhhcCCCcEEEEeC
Confidence             135699999998643221       1112233333    355666666665543  5555555

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0029  Score=47.39  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      +...++..++.|.|+ |.+|..+|..|+.+|.  ++++++++++..+..+..+...   .+........|   .+.    
T Consensus        13 ~~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~~~----   84 (159)
T d2ldxa1          13 PEDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---YNV----   84 (159)
T ss_dssp             SCCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---GGG----
T ss_pred             ccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---hhh----
Confidence            344456667888896 9999999999999976  7999999988877666555432   12222222223   222    


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                             ...-|++|..+|......   ...    .+.+..|    ..+.+.+.+.+.+..  +.++++|
T Consensus        85 -------~~~adivvitag~~~~~~---~~R----~dll~~N----~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          85 -------SANSKLVIITAGARMVSG---QTR----LDLLQRN----VAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             -------GTTEEEEEECCSCCCCTT---TCS----SCTTHHH----HHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             -------hccccEEEEecccccCCC---CCH----HHHHHHH----HHHHHHHHHHHhccCCCeEEEEeC
Confidence                   135699999998744321   111    1223333    455566666555432  6666666

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.0031  Score=46.67  Aligned_cols=112  Identities=17%  Similarity=0.121  Sum_probs=69.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      .++++.|.|| |.+|.++|..|+.+|.  ++++++++++.++.....+...   ..........|   .+.         
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d---~~~---------   71 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD---YDD---------   71 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC---GGG---------
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC---HHH---------
Confidence            5678888897 9999999999999885  7999999988876665555432   12223333333   222         


Q ss_pred             HhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          121 EHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       121 ~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                        ...-|++|.++|......       +.-.+.+..|    ..+.+.+.+.+.+.  ++.++++|
T Consensus        72 --l~daDvvvitag~~~~~~-------~~R~dl~~~N----~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          72 --CRDADLVVICAGANQKPG-------ETRLDLVDKN----IAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             --TTTCSEEEECCSCCCCTT-------TCSGGGHHHH----HHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             --hccceeEEEecccccccC-------cchhHHHHHH----HHHHHHHHHHHHhhCCCceEEEec
Confidence              134699999999743221       1112233333    44555566655443  36666665

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.17  E-value=0.0048  Score=46.18  Aligned_cols=117  Identities=18%  Similarity=0.155  Sum_probs=73.7

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHh---cCCCeeEEEeecCCCHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAEL---MGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      ....++++++.|.|+ |.+|.++|..|+.+|.  ++++++++++..+..+..+..   ...........|   .+++   
T Consensus        14 ~~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~~~---   86 (160)
T d1i0za1          14 EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YSVT---   86 (160)
T ss_dssp             SCCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GGGG---
T ss_pred             ccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hhhc---
Confidence            445556788888897 9999999999999986  899999998877655555533   112222222222   3322   


Q ss_pred             HHHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          116 VDVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                              ..-|++|..||.....   .    +.-.+.+..    ...+.+.+.+.+.+..  +-++++|
T Consensus        87 --------~~adiVVitAg~~~~~---g----~tR~~l~~~----N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          87 --------ANSKIVVVTAGVRQQE---G----ESRLNLVQR----NVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             --------TTCSEEEECCSCCCCT---T----CCGGGGHHH----HHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             --------ccccEEEEecCCcccc---C----cchHHHHHH----HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence                    3569999999974321   1    111223333    4456677777666533  5666666

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.08  E-value=0.00044  Score=52.92  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+++++++++++... ++   +..    ...|..+++..+++.+.. + ..
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~l---Ga~----~~i~~~~~~~~~~v~~~t-~-g~   95 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FY---GAT----DILNYKNGHIEDQVMKLT-N-GK   95 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HH---TCS----EEECGGGSCHHHHHHHHT-T-TS
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hh---Ccc----ccccccchhHHHHHHHHh-h-cc
Confidence            6888999987 8999999888888898 7899999888765443 22   221    223544433333322221 1 13


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus        96 G~D~vid~~g~  106 (174)
T d1jqba2          96 GVDRVIMAGGG  106 (174)
T ss_dssp             CEEEEEECSSC
T ss_pred             CcceEEEccCC
Confidence            59999999985

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.002  Score=48.76  Aligned_cols=45  Identities=18%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQA   91 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~   91 (287)
                      ++|.++|.|+ ||.+++++..|.+.|+ ++.++.|+.++.+.+.+.+
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            5788999998 8999999999999997 7999999999888776654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00044  Score=53.53  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEE-EEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLV-LVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +.+++|+||+||+|...+.-.-..|++++ .++++.++..++..+.   +.+    ...|..+++. .+.++++..  .+
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---gad----~vi~~~~~~~-~~~~~~~~~--~G  100 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GFD----AAVNYKTGNV-AEQLREACP--GG  100 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CCS----EEEETTSSCH-HHHHHHHCT--TC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cce----EEeeccchhH-HHHHHHHhc--cC
Confidence            47899999999999998888777898654 4566666655444333   222    3345554433 333333332  36


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|+++.+.|.
T Consensus       101 vDvv~D~vGg  110 (187)
T d1vj1a2         101 VDVYFDNVGG  110 (187)
T ss_dssp             EEEEEESSCH
T ss_pred             ceEEEecCCc
Confidence            9999999873

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=0.00033  Score=50.98  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=53.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |.++|.|+ |-+|+.+++.|.+.|.+|++++.+++..++..+    .+   ...+..|.++++.++++-      ....|
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~---~~~~~gd~~~~~~l~~a~------i~~a~   66 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA---THAVIANATEENELLSLG------IRNFE   66 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC---SEEEECCTTCTTHHHHHT------GGGCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC---CcceeeecccchhhhccC------Ccccc
Confidence            45778877 799999999999999999999999998776532    22   345668999988776541      12456


Q ss_pred             EEEEccc
Q 042560          128 HLVTNAG  134 (287)
Q Consensus       128 vli~nag  134 (287)
                      .+|-..+
T Consensus        67 ~vi~~~~   73 (134)
T d2hmva1          67 YVIVAIG   73 (134)
T ss_dssp             EEEECCC
T ss_pred             EEEEEcC
Confidence            6665553

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.99  E-value=0.00099  Score=50.76  Aligned_cols=79  Identities=14%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +|+|...+..+...|+ +|+++++++++.+...+    .+..  ..  .|..+ .+.+.+..+....  
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~--~~--i~~~~~~~~~~~~~~~~~~--   96 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT--EC--VNPQDYKKPIQEVLTEMSN--   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS--EE--ECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe--eE--EecCCchhHHHHHHHHHhc--
Confidence            6889999999 6899999999999986 88899999988664432    2221  11  22222 2334444444332  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.+.|.
T Consensus        97 ~G~D~vid~~G~  108 (176)
T d2jhfa2          97 GGVDFSFEVIGR  108 (176)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCCEEEecCCc
Confidence            579999999985

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00027  Score=56.47  Aligned_cols=82  Identities=23%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CCCCCCEEEEecC----------------CChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecC
Q 042560           43 EDVAGKVVLITGA----------------SSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADV  106 (287)
Q Consensus        43 ~~~~~k~alVtGa----------------~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~  106 (287)
                      .+|+|+.+|||+|                ||-.|.++|+.+.++|++|.++.......          ....+..  ..+
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~----------~p~~~~~--~~~   69 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP----------TPPFVKR--VDV   69 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC----------CCTTEEE--EEC
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC----------ccccccc--cee
Confidence            4789999999987                46899999999999999999886644310          0112333  344


Q ss_pred             CCHHHHHHHHHHHHHhcCCccEEEEccccCCCC
Q 042560          107 SKVEDCKHFVDVTMEHFGRLDHLVTNAGVVPMC  139 (287)
Q Consensus       107 ~~~~~v~~~~~~~~~~~~~idvli~nag~~~~~  139 (287)
                      .+.++..+.+.+   .....|++|++|+++.+.
T Consensus        70 ~t~~~m~~~~~~---~~~~~D~~i~aAAvsDf~   99 (223)
T d1u7za_          70 MTALEMEAAVNA---SVQQQNIFIGCAAVADYR   99 (223)
T ss_dssp             CSHHHHHHHHHH---HGGGCSEEEECCBCCSEE
T ss_pred             hhhHHHHHHHHh---hhccceeEeeeechhhhh
Confidence            455555444433   334579999999998654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.88  E-value=0.007  Score=44.54  Aligned_cols=114  Identities=12%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      |++.|.|+ |.+|.++|..|+.+|.  ++++++.+++..+.....+...   ...+......|   .+.+          
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~~l----------   67 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WAAL----------   67 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GGGG----------
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HHHh----------
Confidence            67888896 8999999999999884  8999999988776555444321   22223333333   3222          


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                       ..-|++|.++|......  +.+. +.=.+.+..|    ..+.+.+.+.+++..  +.++++|
T Consensus        68 -~~adiVVitaG~~~~~~--~~~g-~~R~~l~~~N----~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          68 -ADADVVISTLGNIKLQQ--DNPT-GDRFAELKFT----SSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             -TTCSEEEECCSCGGGTC----------CTTHHHH----HHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             -ccccEEEEecccccccc--ccCC-ccHHHHHHHH----HHHHHHHHHHHhhcCCCeEEEEec
Confidence             35699999999753211  0011 1111223333    456677777776543  5666666

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.87  E-value=0.0056  Score=47.35  Aligned_cols=80  Identities=16%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+......|+ +|+++++++++++-..+    .+   .. +..|-.+. ++.+.+.++. .-.
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~G---a~-~~~~~~~~-~~~~~i~~~t-~g~   93 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QG---FE-IADLSLDT-PLHEQIAALL-GEP   93 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT---CE-EEETTSSS-CHHHHHHHHH-SSS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh----cc---cc-EEEeCCCc-CHHHHHHHHh-CCC
Confidence            6889999987 7999888877777787 78889998887654322    22   12 22343333 3333333332 224


Q ss_pred             CccEEEEccccC
Q 042560          125 RLDHLVTNAGVV  136 (287)
Q Consensus       125 ~idvli~nag~~  136 (287)
                      .+|++|.+.|.-
T Consensus        94 g~D~vid~vG~~  105 (195)
T d1kola2          94 EVDCAVDAVGFE  105 (195)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CcEEEEECcccc
Confidence            699999999853

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0063  Score=45.70  Aligned_cols=75  Identities=25%  Similarity=0.291  Sum_probs=50.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+ |++|...+..+...|++|+++++++++++...+    .+.+ . ++  |..+.+..      ..+..+.
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~-~-~i--~~~~~~~~------~~~~~~~   91 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD-H-YI--ATLEEGDW------GEKYFDT   91 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS-E-EE--EGGGTSCH------HHHSCSC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc----cCCc-E-Ee--eccchHHH------HHhhhcc
Confidence            6889999987 899999888777889999999999888764432    2322 1 11  22222111      1223457


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      .|+++.++|.
T Consensus        92 ~d~vi~~~~~  101 (168)
T d1piwa2          92 FDLIVVCASS  101 (168)
T ss_dssp             EEEEEECCSC
T ss_pred             cceEEEEecC
Confidence            8999998875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.78  E-value=0.0018  Score=49.36  Aligned_cols=79  Identities=10%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHH-HHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVED-CKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ ||+|...+..+...|+ +|+++++++++++-..+ +   +..  ++  .|..+.+. .+...+...  .
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~-~---GA~--~~--in~~~~~~~~~~~~~~~~--g   97 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA-V---GAT--EC--ISPKDSTKPISEVLSEMT--G   97 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-H---TCS--EE--ECGGGCSSCHHHHHHHHH--T
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh-c---CCc--EE--ECccccchHHHHHHHHhc--c
Confidence            6889999987 8999999999999996 89999999998774433 2   222  12  23333322 233333222  2


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.+.|.
T Consensus        98 ~G~d~vi~~~g~  109 (176)
T d1d1ta2          98 NNVGYTFEVIGH  109 (176)
T ss_dssp             SCCCEEEECSCC
T ss_pred             ccceEEEEeCCc
Confidence            479999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0036  Score=47.10  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+ |++|...+..+...|+++++++++.++.+. ..++   +.+    ...|..+++...       ...++
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~l---Gad----~~i~~~~~~~~~-------~~~~~   93 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKAL---GAD----EVVNSRNADEMA-------AHLKS   93 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHH---TCS----EEEETTCHHHHH-------TTTTC
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH-Hhcc---CCc----EEEECchhhHHH-------HhcCC
Confidence            6899999986 899999888777889999999998887643 2333   322    224555554322       22257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      +|++|.++|.
T Consensus        94 ~D~vid~~g~  103 (168)
T d1uufa2          94 FDFILNTVAA  103 (168)
T ss_dssp             EEEEEECCSS
T ss_pred             Cceeeeeeec
Confidence            9999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.68  E-value=0.0022  Score=48.72  Aligned_cols=78  Identities=13%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeE-EEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARL-VLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~v-v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+..+...|+++ +++++++++++.+.+ +   +..  .+  .|..+++ +.+.++++.  .+
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~---Ga~--~~--i~~~~~~-~~~~i~~~t--~g   95 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-L---GAT--HV--INSKTQD-PVAAIKEIT--DG   95 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-H---TCS--EE--EETTTSC-HHHHHHHHT--TS
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-c---CCe--EE--EeCCCcC-HHHHHHHHc--CC
Confidence            6889999998 899999998888889855 566777776654432 2   322  22  3544433 333333332  25


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus        96 g~D~vid~~G~  106 (174)
T d1f8fa2          96 GVNFALESTGS  106 (174)
T ss_dssp             CEEEEEECSCC
T ss_pred             CCcEEEEcCCc
Confidence            79999999984

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.63  E-value=0.0095  Score=44.46  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++|.|+ |++|...+..+...|++|+++++++++++...    ..+.+    ...|.++.+..+++.    +...+
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~----~~Ga~----~~i~~~~~~~~~~~~----~~~~g   93 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELAR----KLGAS----LTVNARQEDPVEAIQ----RDIGG   93 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTCS----EEEETTTSCHHHHHH----HHHSS
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhh----ccCcc----ccccccchhHHHHHH----HhhcC
Confidence            5889999886 99999998888888999999999988876432    23322    123555544444332    23344


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      .|..|-+++
T Consensus        94 ~~~~i~~~~  102 (166)
T d1llua2          94 AHGVLVTAV  102 (166)
T ss_dssp             EEEEEECCS
T ss_pred             Ccccccccc
Confidence            555555444

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.62  E-value=0.029  Score=41.42  Aligned_cols=123  Identities=18%  Similarity=0.033  Sum_probs=69.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHh---cCCCeeEEEeecCCCHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAEL---MGSPFALAIPADVSKVEDCKHFVD  117 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~  117 (287)
                      ++..+.+++.|.|+ |.+|..+|..|+..+. ++++++.+++.++..+..+..   ..+....... + ++.+   +.+ 
T Consensus         2 ~~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~-~-~~~~---~~~-   74 (154)
T d1pzga1           2 ALVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E-YSYE---AAL-   74 (154)
T ss_dssp             CCCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E-CSHH---HHH-
T ss_pred             ccccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec-c-Cchh---hhh-
Confidence            34446778888898 9999999999998885 899999988776655544422   1111111111 1 1221   111 


Q ss_pred             HHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          118 VTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       118 ~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                            ..-|++|..+|.......... . ..-...+.    ....+.+.+.+.+.+..  +.++++|
T Consensus        75 ------~~adiVvitag~~~~~g~~~~-~-~tR~~l~~----~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          75 ------TGADCVIVTAGLTKVPGKPDS-E-WSRNDLLP----FNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             ------TTCSEEEECCSCSSCTTCCGG-G-CCGGGGHH----HHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             ------cCCCeEEEecccccCCCCCCc-c-cchhhhhh----hhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence                  256999999997643211000 0 01111222    34455666666665433  5666665

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.01  Score=43.97  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC---------eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA---------RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~---------~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ++.|+||+|.+|.+++..|+..+.         +++..+++.+.++.....+..........+...-.+.+.        
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   77 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVA--------   77 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHH--------
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhh--------
Confidence            799999999999999999998753         222234455555555545444332233333333222222        


Q ss_pred             HHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc-C-C-CEEEEEc
Q 042560          120 MEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-T-K-GKIIVVA  183 (287)
Q Consensus       120 ~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~-~-g~iv~is  183 (287)
                         ....|++|..+|.....      . ++-.+.+..    ...+.+.+.+.+.+ . + +.++.+|
T Consensus        78 ---~~~advViitaG~~~~p------g-~~r~dl~~~----N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          78 ---FKDADYALLVGAAPRKA------G-MERRDLLQV----NGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             ---TTTCSEEEECCCCCCCT------T-CCHHHHHHH----HHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ---cccccEEEeecCcCCCC------C-CcHHHHHHH----HHHHHHHHHHHHHHhCCCCcEEEEec
Confidence               24679999999974321      1 122223333    34566666666655 2 2 3444444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0011  Score=44.90  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      +++||+++|.|. |.-|+++|+.|.++|++|.+.+.+..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            689999999999 67899999999999999999998654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.58  E-value=0.022  Score=41.60  Aligned_cols=112  Identities=18%  Similarity=0.124  Sum_probs=64.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRL  126 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i  126 (287)
                      ++.|.||+|.+|.++|..|+.+|.  ++++++.++.+.+.  ..+.... . ......-+. ..+..+.+       ..-
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~-~-~~~~~~~~~-~~~~~~~~-------~~a   69 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIE-T-RATVKGYLG-PEQLPDCL-------KGC   69 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSS-S-SCEEEEEES-GGGHHHHH-------TTC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhh-h-hcCCCeEEc-CCChHHHh-------CCC
Confidence            578999999999999999999986  79999987654322  2222111 1 111111122 22222222       357


Q ss_pred             cEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          127 DHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       127 dvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                      |++|..+|.....      . +.-.+.+..|.    .+.+.+.+.+.+.  ++.++++|
T Consensus        70 DivVitag~~~~~------g-~sR~~ll~~N~----~i~~~i~~~i~~~~p~~iiivvt  117 (144)
T d1mlda1          70 DVVVIPAGVPRKP------G-MTRDDLFNTNA----TIVATLTAACAQHCPDAMICIIS  117 (144)
T ss_dssp             SEEEECCSCCCCT------T-CCGGGGHHHHH----HHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CEEEECCCcCCCC------C-CCcchHHHHHH----HHHHHHHHHHHhcCCCeEEEEec
Confidence            9999999964221      1 22223445544    4456666655543  36666666

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0063  Score=44.94  Aligned_cols=75  Identities=13%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccE
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDH  128 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idv  128 (287)
                      .++|.|. +-+|+.+++.|.++|.++++++.+++...+..+.....   .+.++.+|.+|++.++++-      ..+.|.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~~~vi~Gd~~d~~~L~~a~------i~~a~~   74 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD---NADVIPGDSNDSSVLKKAG------IDRCRA   74 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT---TCEEEESCTTSHHHHHHHT------TTTCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC---CcEEEEccCcchHHHHHhc------cccCCE
Confidence            4777787 79999999999999999999999888766655555432   3778899999988776552      134566


Q ss_pred             EEEcc
Q 042560          129 LVTNA  133 (287)
Q Consensus       129 li~na  133 (287)
                      +|...
T Consensus        75 vi~~~   79 (153)
T d1id1a_          75 ILALS   79 (153)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            66655

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.0013  Score=49.93  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=36.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA   88 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~   88 (287)
                      ++.+++|+||+||.|...+.-....|++|+.+.++.++.+.+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~   65 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK   65 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence            5667999999999999998777778999999999988766543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.56  E-value=0.0071  Score=47.00  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           25 PLYLLFKFLHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      |-+-.+..+..........+++||+++|-| -|..|..+|+.|.+.|++|++++.+...++..
T Consensus         5 Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1           5 TAVGVFEAMKATVAHRGLGSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            333343333333333445589999999998 57899999999999999999999988776543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0018  Score=49.50  Aligned_cols=42  Identities=24%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      ++.+++|+||+||+|...+.-....|++|+.+++++++.+.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            456899999999999998888888899999999999886544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.53  E-value=0.0033  Score=47.52  Aligned_cols=79  Identities=16%  Similarity=0.205  Sum_probs=51.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCC-CHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVS-KVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +|+|...+..+...|+ +|+++++++++++ ..+++   +.+  .+  .|.. +.+.+.+..++...  
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~-~ak~l---Ga~--~~--i~~~~~~~~~~~~~~~~~~--   96 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFA-RAKEF---GAT--EC--INPQDFSKPIQEVLIEMTD--   96 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHH-HHHHH---TCS--EE--ECGGGCSSCHHHHHHHHTT--
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHH-HHHHh---CCc--EE--EeCCchhhHHHHHHHHHcC--
Confidence            6889999998 5999999998888997 5667777777754 33333   222  12  2332 22334444444322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus        97 ~g~D~vid~~G~  108 (176)
T d2fzwa2          97 GGVDYSFECIGN  108 (176)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCCcEeeecCCC
Confidence            479999999984

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.51  E-value=0.0044  Score=47.05  Aligned_cols=79  Identities=13%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCC-HHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSK-VEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+++++++++++-. +++   +..  ..  .|..+ .+..+...+...  .
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~---Ga~--~~--i~~~~~~~~~~~~~~~~~--~   96 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL---GAT--DC--LNPRELDKPVQDVITELT--A   96 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCS--EE--ECGGGCSSCHHHHHHHHH--T
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHh---CCC--cc--cCCccchhhhhhhHhhhh--c
Confidence            6889999975 9999999999999998 677888888875432 322   322  22  23222 223344444333  2


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|++|.++|.
T Consensus        97 ~G~d~vie~~G~  108 (174)
T d1e3ia2          97 GGVDYSLDCAGT  108 (174)
T ss_dssp             SCBSEEEESSCC
T ss_pred             CCCcEEEEeccc
Confidence            589999999984

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.49  E-value=0.0029  Score=48.07  Aligned_cols=80  Identities=16%  Similarity=0.234  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHH-HHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVE-DCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~v~~~~~~~~~~  122 (287)
                      .+|.+++|.|+ ||+|...+..+...|+ +|+++++++++++...+    .+.+  .+  .|.++.+ .+.+..+...  
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~--~~--i~~~~~d~~~~~~~~~~~--   94 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT--EC--LNPKDYDKPIYEVICEKT--   94 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS--EE--ECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc--EE--EcCCCchhHHHHHHHHhc--
Confidence            36899999996 8999999999999997 78889999888764432    2322  12  3433322 2333333222  


Q ss_pred             cCCccEEEEcccc
Q 042560          123 FGRLDHLVTNAGV  135 (287)
Q Consensus       123 ~~~idvli~nag~  135 (287)
                      .+.+|++|-++|.
T Consensus        95 ~~G~d~vid~~g~  107 (174)
T d1p0fa2          95 NGGVDYAVECAGR  107 (174)
T ss_dssp             TSCBSEEEECSCC
T ss_pred             CCCCcEEEEcCCC
Confidence            2479999998874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.46  E-value=0.0079  Score=42.04  Aligned_cols=41  Identities=20%  Similarity=0.126  Sum_probs=35.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..+++||+++|.|+ |.+|..-++.|.+.|++|++++.....
T Consensus         7 ~l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~   47 (113)
T d1pjqa1           7 FCQLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIP   47 (113)
T ss_dssp             EECCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred             EEEeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence            35889999999999 669999999999999999998876543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.082  Score=38.44  Aligned_cols=112  Identities=18%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-C--CeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           49 VVLITGASSGIGKHLAYEYARR-R--ARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.|+|++|.+|.++|..|+.+ +  .++++.+..+. .+.....+.............+-.+.+.+           ..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~-----------~~   69 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDATPAL-----------EG   69 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCSSCEEEEECSSCCHHHH-----------TT
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCccccCCcEEEcCCCcccc-----------CC
Confidence            5789999999999999998754 4  58999998653 33333344332211111222222333222           24


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                      -|++|..+|.....      . ++-.+.+..|.    .+.+.+.+.+.+.  ++.++++|
T Consensus        70 aDvvvitaG~~~k~------g-~~R~dl~~~N~----~i~~~v~~~i~~~~p~aivivvt  118 (145)
T d2cmda1          70 ADVVLISAGVRRKP------G-MDRSDLFNVNA----GIVKNLVQQVAKTCPKACIGIIT  118 (145)
T ss_dssp             CSEEEECCSCCCCT------T-CCGGGGHHHHH----HHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCEEEECCCccCCC------C-cchhhHHHHHH----HHHHHHHHHHHhhCCCcEEEEcc
Confidence            69999999974321      1 22223444443    4555555655543  35666666

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.38  E-value=0.0032  Score=47.94  Aligned_cols=50  Identities=22%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAEL   93 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~   93 (287)
                      ..+++||.++|.|+ ||.+++++..|.+.| ++.+..|+.++.+++.+.+..
T Consensus        13 ~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~   62 (177)
T d1nvta1          13 IGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAE   62 (177)
T ss_dssp             HCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHH
Confidence            34589999999998 689999999998776 999999999999988877754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.38  E-value=0.034  Score=40.56  Aligned_cols=112  Identities=20%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChh--HHHHHHHHHHh---cCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRER--QLREVADQAEL---MGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~--~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ++.|.||+|.+|.++|..|+.+|.  +++++++++.  +.+.....+..   ...........--.|.+.          
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~----------   71 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRI----------   71 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGG----------
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHH----------
Confidence            488999999999999999999984  8999998753  33433333332   111122222111112222          


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC-CCEEEEE
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT-KGKIIVV  182 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~g~iv~i  182 (287)
                       ...-|++|.+||.....      . +.=.+.+..|    ..+.+.+.+.+.+. ...++.+
T Consensus        72 -l~~aDvVVitAG~~~~~------g-~sR~dl~~~N----a~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          72 -IDESDVVIITSGVPRKE------G-MSRMDLAKTN----AKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             -GTTCSEEEECCSCCCCT------T-CCHHHHHHHH----HHHHHHHHHHHHHHCCCEEEEC
T ss_pred             -hccceEEEEecccccCC------C-CChhhhhhhh----HHHHHHHHHHHhccCCCeEEEE
Confidence             13569999999974321      1 1111233433    34556666655443 3455544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.34  E-value=0.0092  Score=44.92  Aligned_cols=78  Identities=17%  Similarity=0.259  Sum_probs=50.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++|.|+ |++|...+..+...|+ +|+.+++++++++...+    .+.+  .+  .|.+ .+.+++..+...  ..
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~--~~--i~~~-~~~~~~~~~~~~--~~   99 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD--HV--VDAR-RDPVKQVMELTR--GR   99 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS--EE--EETT-SCHHHHHHHHTT--TC
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc--ee--ecCc-ccHHHHHHHhhC--CC
Confidence            5789999986 9999999888888887 66778888876554332    3322  22  3433 333443333221  13


Q ss_pred             CccEEEEcccc
Q 042560          125 RLDHLVTNAGV  135 (287)
Q Consensus       125 ~idvli~nag~  135 (287)
                      ++|++|.++|.
T Consensus       100 g~d~vid~~g~  110 (172)
T d1h2ba2         100 GVNVAMDFVGS  110 (172)
T ss_dssp             CEEEEEESSCC
T ss_pred             CceEEEEecCc
Confidence            69999999985

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0051  Score=47.51  Aligned_cols=44  Identities=27%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAE   92 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~   92 (287)
                      |++.|.|| |-+|.++|..++..|++|++.+++++.++...+.++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH
Confidence            57889999 779999999999999999999999988777666553

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.26  E-value=0.011  Score=44.56  Aligned_cols=79  Identities=13%  Similarity=0.211  Sum_probs=52.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHH-HHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVED-CKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-v~~~~~~~~~~~  123 (287)
                      +|.+++|.|+ +|+|...+..+...|+ +|+.+++++++++...+    .+.+  ++  .|..+++. .++..+....  
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd--~~--in~~~~~~~~~~~~~~~~~--   96 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT--DF--VNPNDHSEPISQVLSKMTN--   96 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC--EE--ECGGGCSSCHHHHHHHHHT--
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc--EE--EcCCCcchhHHHHHHhhcc--
Confidence            6889999986 7788888888888887 68889998888754332    3322  22  34333322 3333333322  


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      +++|+++.++|.
T Consensus        97 ~G~d~vid~~G~  108 (175)
T d1cdoa2          97 GGVDFSLECVGN  108 (175)
T ss_dssp             SCBSEEEECSCC
T ss_pred             CCcceeeeecCC
Confidence            479999999985

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.21  E-value=0.029  Score=40.79  Aligned_cols=110  Identities=17%  Similarity=0.087  Sum_probs=66.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCC--hhHHHHHHHHHHh--cCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARR--ERQLREVADQAEL--MGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~--~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ++.|.||+|.+|.++|..+..+|.  ++++.+.+  ++..+.....+..  ....+......|   .++           
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~~-----------   67 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YED-----------   67 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GGG-----------
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HHH-----------
Confidence            578999999999999999999986  78998864  3333333333322  112234433333   222           


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ...-|++|..||.....      . ++-.+.+.    ....+.+.+.+.+.+..  +.++.+|
T Consensus        68 ~~~aDiVvitaG~~~~~------g-~~R~dl~~----~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          68 TAGSDVVVITAGIPRQP------G-QTRIDLAG----DNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             GTTCSEEEECCCCCCCT------T-CCHHHHHH----HHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             hhhcCEEEEeccccccc------C-CchhhHHH----HHHHHHHHHHHHHHhcCCCceEEEec
Confidence            13569999999964221      1 11112333    34467777888777653  5666665

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.19  E-value=0.049  Score=41.04  Aligned_cols=107  Identities=20%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcC---C----eEEEEeCCh--hHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRR---A----RLVLVARRE--RQLREVADQAELMGSPFALAIPADVSKVEDCKHFV  116 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G---~----~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~  116 (287)
                      +..++.|+||+|.||.+++..|++.+   .    .+.+.+...  ..++...-+++.........+..- ++..      
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~~~------   95 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-IDPY------   95 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SCHH------
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-ccch------
Confidence            34579999999999999999999853   2    345555543  334444444444322222222211 1211      


Q ss_pred             HHHHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc
Q 042560          117 DVTMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ  174 (287)
Q Consensus       117 ~~~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~  174 (287)
                          +.+...|++|..+|.....      . +.-.+.+..|    ..+.+...+.+.+
T Consensus        96 ----~~~~~aDvVvi~ag~~rkp------g-~tR~Dll~~N----~~I~k~~~~~i~~  138 (175)
T d7mdha1          96 ----EVFEDVDWALLIGAKPRGP------G-MERAALLDIN----GQIFADQGKALNA  138 (175)
T ss_dssp             ----HHTTTCSEEEECCCCCCCT------T-CCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred             ----hhccCCceEEEeeccCCCC------C-CcHHHHHHHH----HHHHHHHHHHHHh
Confidence                1224789999999874321      1 2333344444    4556666666655

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.16  E-value=0.01  Score=43.64  Aligned_cols=42  Identities=12%  Similarity=0.183  Sum_probs=36.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      +..=|++.|.||.|-+|..+|+.|.+.|++|.+.+|+.....
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            334467999999999999999999999999999999876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.16  E-value=0.0057  Score=46.27  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +|++.|.|| |.+|.++|..|+++|++|.+.+|+++..+...+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            578999999 899999999999999999999999888776544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.3  Score=40.16  Aligned_cols=158  Identities=15%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|++++=.+++.| |.++  .++..+.+|+.++.++..++.+.+..+.++-.++.++..|..+      ..+...+..+
T Consensus       144 ~~g~rVLDl~~gtG-~~s~--~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~------~~~~~~~~~~  214 (318)
T d1wxxa2         144 FRGERALDVFSYAG-GFAL--HLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFD------LLRRLEKEGE  214 (318)
T ss_dssp             CCEEEEEEETCTTT-HHHH--HHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHH------HHHHHHHTTC
T ss_pred             hCCCeeeccCCCCc-HHHH--HHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHH------HhhhhHhhhc
Confidence            47888887777655 3333  3455677999999999999988888887775568888888633      2233344446


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHHHH
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKAAK  204 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal  204 (287)
                      +.|++|.++.......       ..    ..........+.+.+.+.+++ +|.+++.|- +..          .+..-.
T Consensus       215 ~fD~Vi~DpP~~~~~~-------~~----~~~~~~~~~~l~~~a~~lLkp-GG~Lv~~sc-s~~----------~~~~~f  271 (318)
T d1wxxa2         215 RFDLVVLDPPAFAKGK-------KD----VERAYRAYKEVNLRAIKLLKE-GGILATASC-SHH----------MTEPLF  271 (318)
T ss_dssp             CEEEEEECCCCSCCST-------TS----HHHHHHHHHHHHHHHHHTEEE-EEEEEEEEC-CTT----------SCHHHH
T ss_pred             CCCEEEEcCCccccch-------HH----HHHHHHHHHHHHHHHHHHcCC-CCEEEEEeC-Ccc----------cCHHHH
Confidence            8999999985432211       11    111112223455566565554 556555442 221          112334


Q ss_pred             HHHHHHHHHHhCCCeEEEEEeCCcccCCCc
Q 042560          205 IALYETLRVEFGGDIGITIVTPGLIESEIT  234 (287)
Q Consensus       205 ~~~~~~la~e~~~~i~v~~i~PG~v~t~~~  234 (287)
                      ..++...+.+.+..+++....--+.|-|..
T Consensus       272 ~~~v~~a~~~a~~~~~~~~~~~~~~DhP~~  301 (318)
T d1wxxa2         272 YAMVAEAAQDAHRLLRVVEKRGQPFDHPVL  301 (318)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECCCTTSCCB
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCCCCCCC
Confidence            444555555555456655433333444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.02  E-value=0.03  Score=41.52  Aligned_cols=39  Identities=26%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +.|.|+ |-+|.++|+.|.++|++|+..+|+++..++..+
T Consensus         3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH
Confidence            556666 999999999999999999999999887765443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.037  Score=40.08  Aligned_cols=109  Identities=17%  Similarity=0.075  Sum_probs=65.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc--CCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM--GSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.|.|+ |.+|.+++..++.+|.  ++++.+.+++.++.....+...  ...+......|   .+++           .
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~~~-----------~   66 (140)
T d1a5za1           2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YADL-----------K   66 (140)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GGGG-----------T
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HHHh-----------c
Confidence            3567797 8999999999999874  8999999988776555444331  11223333222   2222           3


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      .-|++|.++|......       +.-.+.+..|    ..+.+.+.+.+.+..  +.++++|
T Consensus        67 ~adivvitag~~~~~g-------~~r~dl~~~N----~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          67 GSDVVIVAAGVPQKPG-------ETRLQLLGRN----ARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             TCSEEEECCCCCCCSS-------CCHHHHHHHH----HHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEEecccccCCC-------cchhhhhccc----cchHHHHHHHHHhcCCCcEEEEeC
Confidence            5699999999743321       1111223333    456677777665532  5566655

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.83  E-value=0.035  Score=40.32  Aligned_cols=109  Identities=19%  Similarity=0.105  Sum_probs=60.1

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++.|.|+ |.+|.++|..++.+|.  ++++++++++..+.....+....  .........   +.++           ..
T Consensus         3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~-----------~~   67 (142)
T d1y6ja1           3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DYSD-----------VK   67 (142)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGGG-----------GT
T ss_pred             eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cHHH-----------hC
Confidence            4555587 9999999999999876  79999999887655555554321  112222111   2222           23


Q ss_pred             CccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcC--CCEEEEEc
Q 042560          125 RLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQT--KGKIIVVA  183 (287)
Q Consensus       125 ~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~--~g~iv~is  183 (287)
                      .-|++|..+|.....      . +.-...+..    ...+.+.+.+.+.+.  ++.++++|
T Consensus        68 ~adivvitag~~~~~------~-~~r~~l~~~----N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          68 DCDVIVVTAGANRKP------G-ETRLDLAKK----NVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             TCSEEEECCCC-------------CHHHHHHH----HHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             CCceEEEecccccCc------C-cchhHHhhH----HHHHHHHHHHHhhccCCCceEEEec
Confidence            569999999964321      1 111223333    345666666666553  25666665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.82  E-value=0.042  Score=40.64  Aligned_cols=41  Identities=22%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +|.+++|.|+ |++|...+..+...|++|+++++++++++..
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            6788999876 8899998888888899999999998887643

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.75  E-value=0.028  Score=42.34  Aligned_cols=83  Identities=10%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHH---------------hcCCCeeEEEeecCCCHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAE---------------LMGSPFALAIPADVSKVEDCK  113 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~~~D~~~~~~v~  113 (287)
                      .+-|.|- |-+|.++|++|++.|++|++.+|++++.+++.++-.               ..- .....+...+.+.+.+.
T Consensus         4 nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           4 DIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL-KKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB-CSSCEEEECSCTTHHHH
T ss_pred             cEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh-cccceEEEecCchHHHH
Confidence            3666776 899999999999999999999999998887654311               100 11233444566667777


Q ss_pred             HHHHHHHHhcCCccEEEEcc
Q 042560          114 HFVDVTMEHFGRLDHLVTNA  133 (287)
Q Consensus       114 ~~~~~~~~~~~~idvli~na  133 (287)
                      +..+.+.....+=+++|...
T Consensus        82 ~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECS
T ss_pred             HHHHHHHhccccCcEEEecC
Confidence            77777766554445555554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.74  E-value=0.097  Score=37.83  Aligned_cols=111  Identities=20%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      |++.|.|+ |.+|.++|..|+.++. ++++.+.+++..+.....+...   ..........  .|.+.+           
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~~~-----------   67 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYADT-----------   67 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGGG-----------
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHHHh-----------
Confidence            46677796 9999999999999885 8999999887665544444221   0111222111  122221           


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ..-|++|.+||......       +.-.+.+..|    ..+.+.+.+.+.+..  +.++++|
T Consensus        68 ~~advvvitag~~~~~~-------~~r~dl~~~N----~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          68 ANSDVIVVTSGAPRKPG-------MSREDLIKVN----ADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             TTCSEEEECCSCC----------------CHHHH----HHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             cCCCEEEEeeeccCCcC-------cchhHHHhHH----HHHHHHHHHHHhccCCCceEEEeC
Confidence            35699999999753221       1112333444    356777777776543  5555544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.69  E-value=0.0076  Score=46.19  Aligned_cols=44  Identities=20%  Similarity=0.312  Sum_probs=37.7

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAE   92 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~   92 (287)
                      |++.|.|| |-+|.++|..++..|++|++.+++++.+++..+.+.
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~   48 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA   48 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhh
Confidence            34788888 789999999999999999999999998877666553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0086  Score=44.06  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=33.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ..+++||+++|.|| |.+|..-++.|.+.|++|.+++..
T Consensus         8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999 669999999999999999998653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.66  E-value=0.038  Score=40.22  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|.|+ |.+|.++|..++.+|.  ++++.+++++..+.....++..   .+. ......+  +.+..           
T Consensus         3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~-~~i~~~~--~~~~~-----------   67 (143)
T d1llda1           3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPT-VSIDGSD--DPEIC-----------   67 (143)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTT-CEEEEES--CGGGG-----------
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCC-ceeecCC--CHHHh-----------
Confidence            3556687 9999999999999986  7999999988776554444331   121 2222221  22221           


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ..-|++|..+|.....      . +.-.+.+..|    ..+.+.+.+.+.+..  +.++++|
T Consensus        68 ~daDvVVitaG~~~~~------g-~~R~dl~~~N----~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          68 RDADMVVITAGPRQKP------G-QSRLELVGAT----VNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             TTCSEEEECCCCCCCT------T-CCHHHHHHHH----HHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             hCCcEEEEecccccCC------C-Cchhhhhhhh----HHHHHHHHHHHHhhCCCeEEEEeC
Confidence            2459999999964321      1 1112233333    455666666665443  5555655

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.58  E-value=0.12  Score=41.75  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             CEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           48 KVVLITGASSG-IGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        48 k~alVtGa~~g-iG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++++-.|+++| |+.+++ +  ...++|+.++.++..++-+.+..+..+- .++.+...|+.+.         ..+..++
T Consensus       112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~~~  179 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKFAS  179 (271)
T ss_dssp             CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGTTT
T ss_pred             cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------cccccCc
Confidence            34565666655 444443 2  3577999999999999888887776553 3567777887643         2233478


Q ss_pred             ccEEEEccccCCCC
Q 042560          126 LDHLVTNAGVVPMC  139 (287)
Q Consensus       126 idvli~nag~~~~~  139 (287)
                      +|++|.|..+.+..
T Consensus       180 fDlIVsNPPYI~~~  193 (271)
T d1nv8a_         180 IEMILSNPPYVKSS  193 (271)
T ss_dssp             CCEEEECCCCBCGG
T ss_pred             ccEEEEcccccCcc
Confidence            99999999987543

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.54  E-value=0.096  Score=37.87  Aligned_cols=110  Identities=15%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|.|+ |.+|.++|..++.+|.  ++++++.+++..+.....++..   ..........  .|.+++           
T Consensus         2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~--~d~~~~-----------   67 (142)
T d1ojua1           2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYSLL-----------   67 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGGGG-----------
T ss_pred             EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccC--CCHHHh-----------
Confidence            4667796 9999999999999885  7999999988776554444321   1222222222  122222           


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ..-|++|..+|.....      . +.-.+.    +.....+.+.+.+.+.+..  +.++++|
T Consensus        68 ~~adiVvitag~~~~~------g-~~r~~l----~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          68 KGSEIIVVTAGLARKP------G-MTRLDL----AHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             TTCSEEEECCCCCCCS------S-CCHHHH----HHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             ccccEEEEeccccCCC------C-CchHHH----HHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            3569999999864321      1 111122    2334456677777776643  5555555

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.52  E-value=0.13  Score=37.70  Aligned_cols=114  Identities=22%  Similarity=0.135  Sum_probs=61.4

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-------eEEEEeCChh--HHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-------RLVLVARRER--QLREVADQAELMGSPFALAIPADVSKVEDCKHFVDV  118 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-------~vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~  118 (287)
                      .++.|+||+|.+|.+++..|++.+-       .+++.+.+..  ..+....++..........+..--.+.+.       
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------   76 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIA-------   76 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHH-------
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccc-------
Confidence            3689999999999999999987642       3566665433  33433333333221122222221111111       


Q ss_pred             HHHhcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhc-CC--CEEEEEc
Q 042560          119 TMEHFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQ-TK--GKIIVVA  183 (287)
Q Consensus       119 ~~~~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~-~~--g~iv~is  183 (287)
                          ....|++|..+|......       +.-.+.+..|    ..+.+...+.+.+ .+  +.++.+|
T Consensus        77 ----~~~~dvVVitag~~~~~g-------~sr~dll~~N----~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          77 ----FKDLDVAILVGSMPRRDG-------MERKDLLKAN----VKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             ----TTTCSEEEECCSCCCCTT-------CCTTTTHHHH----HHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ----cCCceEEEEecccCCCCC-------CchhHHHHHh----HHHHHHHHHHHHhhCCCceEEEEec
Confidence                246799999998754321       1112233433    4566666666644 23  3444544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.29  E-value=0.12  Score=37.27  Aligned_cols=74  Identities=20%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++.|.|| |.+|.+++..|+..|.  ++++++.+++.++.....+...   ...+......  .|.+.           .
T Consensus         2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~~-----------~   67 (142)
T d1guza1           2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYAD-----------T   67 (142)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGGG-----------G
T ss_pred             EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHHH-----------h
Confidence            3667797 8999999999999984  8999999887765444333221   1112333222  22322           1


Q ss_pred             CCccEEEEccccC
Q 042560          124 GRLDHLVTNAGVV  136 (287)
Q Consensus       124 ~~idvli~nag~~  136 (287)
                      ..-|++|..+|..
T Consensus        68 ~dadvvvitag~~   80 (142)
T d1guza1          68 ANSDIVIITAGLP   80 (142)
T ss_dssp             TTCSEEEECCSCC
T ss_pred             cCCeEEEEEEecC
Confidence            3569999999874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.12  E-value=0.027  Score=41.78  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +-|.|- |-+|.++|++|++.|++|++.+|++++.+++.+
T Consensus         3 IgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~   41 (161)
T d1vpda2           3 VGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA   41 (161)
T ss_dssp             EEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH
Confidence            445554 899999999999999999999999988776644

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.89  E-value=0.42  Score=34.62  Aligned_cols=116  Identities=16%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc---CCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM---GSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      .++.|.|+ |.+|.++|..|..++. ++++++++++..+..+..+...   ...+......|  +.+.           .
T Consensus         4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~~-----------~   69 (150)
T d1t2da1           4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYDD-----------L   69 (150)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGGG-----------G
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cccc-----------c
Confidence            45777796 8999999998888875 8999999887766554444221   11223333222  2222           2


Q ss_pred             CCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCC--CEEEEEc
Q 042560          124 GRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTK--GKIIVVA  183 (287)
Q Consensus       124 ~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--g~iv~is  183 (287)
                      ..-|++|.++|.......... . ..-...+..|    ..+.+.+.+.+.+..  +.++++|
T Consensus        70 ~~advvvitag~~~~~g~~~~-~-~~R~~l~~~N----~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          70 AGADVVIVTAGFTKAPGKSDK-E-WNRDDLLPLN----NKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             TTCSEEEECCSCSSCTTCCST-T-CCGGGGHHHH----HHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCcEEEEecccccCCCCCcc-c-cchhHHHHHH----HHHHHHHHHHHHhcCCCeEEEEec
Confidence            357999999997543221110 1 1111223433    355566666555432  5666666

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.84  E-value=0.23  Score=41.00  Aligned_cols=116  Identities=14%  Similarity=0.140  Sum_probs=71.3

Q ss_pred             CCCEEEEecCCC-hHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASS-GIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~-giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +|+++|=.+++. +++.+    ++..|+ +|+.++.++..++...+..+.++- .++.++..|+.      +......+.
T Consensus       145 ~g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~  214 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKK  214 (324)
T ss_dssp             TTCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHT
T ss_pred             CCCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhc
Confidence            478888777764 44443    445676 799999999999988888877663 46777777753      223333444


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEc
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVA  183 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~is  183 (287)
                      ..+.|++|.++.......       .    ...........+...+++.+++ +|.+++.+
T Consensus       215 ~~~fD~Vi~DpP~~~~~~-------~----~~~~~~~~y~~l~~~a~~ll~p-GG~lv~~s  263 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHE-------K----DLKAGLRAYFNVNFAGLNLVKD-GGILVTCS  263 (324)
T ss_dssp             TCCEEEEEECCCCSCSSG-------G----GHHHHHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred             cCCCCchhcCCccccCCH-------H----HHHHHHHHHHHHHHHHHHHcCC-CcEEEEEe
Confidence            468999999876432211       1    1111122334455666666554 56666554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.76  E-value=0.14  Score=38.00  Aligned_cols=79  Identities=16%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+..+++|.|| |--|++-++-..+.|++|.+.|.+.+.+++.......    ++...   .++++.+++.++       
T Consensus        30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----~~~~~---~~~~~~l~~~~~-------   94 (168)
T d1pjca1          30 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----RVELL---YSNSAEIETAVA-------   94 (168)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----GSEEE---ECCHHHHHHHHH-------
T ss_pred             CCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----cceee---hhhhhhHHHhhc-------
Confidence            35678999998 7889999999999999999999999998877665532    23332   345666555443       


Q ss_pred             CccEEEEccccCCC
Q 042560          125 RLDHLVTNAGVVPM  138 (287)
Q Consensus       125 ~idvli~nag~~~~  138 (287)
                      .-|++|.++-+...
T Consensus        95 ~aDivI~aalipG~  108 (168)
T d1pjca1          95 EADLLIGAVLVPGR  108 (168)
T ss_dssp             TCSEEEECCCCTTS
T ss_pred             cCcEEEEeeecCCc
Confidence            46999999976543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.098  Score=41.38  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      .++++++++|.|+ ||+|..++..|++.|- ++.++|..
T Consensus        26 ~kL~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4578999999996 8999999999999998 78888754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.39  E-value=0.12  Score=38.10  Aligned_cols=38  Identities=11%  Similarity=0.144  Sum_probs=32.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVA   88 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~   88 (287)
                      +-+.| .|-+|.++|++|.++|++|.+.+|+.++.+.+.
T Consensus         4 Ig~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~   41 (162)
T d3cuma2           4 IAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV   41 (162)
T ss_dssp             EEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             EEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh
Confidence            44554 489999999999999999999999988876654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.06  Score=39.94  Aligned_cols=40  Identities=25%  Similarity=0.327  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..+.||+++|.|- |-+|+.+|+.+...|++|++++..+.+
T Consensus        20 ~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~   59 (163)
T d1li4a1          20 VMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPIN   59 (163)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             ceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccch
Confidence            4679999999997 589999999999999999999998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.32  E-value=0.19  Score=37.33  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             CCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHH
Q 042560           55 ASSGIGKHLAYEYARRRARLVLVARRERQLREVADQ   90 (287)
Q Consensus        55 a~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~   90 (287)
                      |.|-+|.++|++|++.|++|.+.+|++++.+++.++
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            458999999999999999999999999998877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.18  E-value=0.04  Score=39.06  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      |.++|.|. +.+|+.+++.|  +|..+++++.+++..+....    .   .+.++.+|.++++.++++      ...+-+
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~----~---~~~~i~Gd~~~~~~L~~a------~i~~A~   64 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKVLR----S---GANFVHGDPTRVSDLEKA------NVRGAR   64 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHHHH----T---TCEEEESCTTSHHHHHHT------TCTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHHHh----c---CccccccccCCHHHHHHh------hhhcCc
Confidence            45788886 78999999999  46678888988887665432    1   367788999998777654      123455


Q ss_pred             EEEEcc
Q 042560          128 HLVTNA  133 (287)
Q Consensus       128 vli~na  133 (287)
                      .+|...
T Consensus        65 ~vi~~~   70 (129)
T d2fy8a1          65 AVIVNL   70 (129)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            665433

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.03  Score=39.96  Aligned_cols=74  Identities=18%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEE-eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLV-ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++.|.|++|-.|+++++.+.++|++++.. +++....      +   .  ... +..|+|.++...+.++...+.  ++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~------~---~--~~D-VvIDFS~p~~~~~~l~~~~~~--~~p   67 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE------L---D--SPD-VVIDFSSPEALPKTVDLCKKY--RAG   67 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE------C---S--CCS-EEEECSCGGGHHHHHHHHHHH--TCE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH------h---c--cCC-EEEEecCHHHHHHHHHHHHhc--CCC
Confidence            48899999999999999999999987753 4433210      0   0  111 457999999999999988876  566


Q ss_pred             EEEEccccC
Q 042560          128 HLVTNAGVV  136 (287)
Q Consensus       128 vli~nag~~  136 (287)
                      +++-..|..
T Consensus        68 ~ViGTTG~~   76 (128)
T d1vm6a3          68 LVLGTTALK   76 (128)
T ss_dssp             EEECCCSCC
T ss_pred             EEEEcCCCC
Confidence            888888764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.05  E-value=0.15  Score=36.48  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-CCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGKHLAYEYARR-RARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++.|.|++|-.|+++++...+. +++++..-...+.+...    ...+.+    +..|+|.++.+.+.++...+.  ++-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~----~~~~~D----vvIDFS~p~~~~~~~~~~~~~--~~~   70 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL----TDGNTE----VVIDFTHPDVVMGNLEFLIDN--GIH   70 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHH----HTTTCS----EEEECCCTTTHHHHHHHHHHT--TCE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhh----ccccCC----EEEEcccHHHHHHHHHHHHhc--CCC
Confidence            4789999999999999987764 56766433322222211    111222    568999999999999988775  566


Q ss_pred             EEEEccccC
Q 042560          128 HLVTNAGVV  136 (287)
Q Consensus       128 vli~nag~~  136 (287)
                      +++-..|..
T Consensus        71 ~ViGTTG~~   79 (135)
T d1yl7a1          71 AVVGTTGFT   79 (135)
T ss_dssp             EEECCCCCC
T ss_pred             EEEeccccc
Confidence            788777763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.04  E-value=0.21  Score=38.22  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ..-+++|++++=.|+++|.   ++..++..|+ +|+.++.++..++.+.+.++..+ .+..++..|+.+.          
T Consensus        41 ~~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~-~~~~~~~~d~~~~----------  106 (201)
T d1wy7a1          41 SLGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSEF----------  106 (201)
T ss_dssp             HTTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-TSEEEEESCGGGC----------
T ss_pred             hcCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC-CCceEEECchhhh----------
Confidence            3467899999999998772   2334556786 89999999998888777766554 3577888886432          


Q ss_pred             HHhcCCccEEEEccccC
Q 042560          120 MEHFGRLDHLVTNAGVV  136 (287)
Q Consensus       120 ~~~~~~idvli~nag~~  136 (287)
                         .++.|++|.|..+.
T Consensus       107 ---~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 ---NSRVDIVIMNPPFG  120 (201)
T ss_dssp             ---CCCCSEEEECCCCS
T ss_pred             ---CCcCcEEEEcCccc
Confidence               35799999998653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.97  E-value=0.19  Score=39.40  Aligned_cols=68  Identities=13%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHhh-hhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           23 FLPLYLLFKFLHFV-IRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        23 ~~~~~~~~~~~~~~-~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      ..|-|-.+..+... .......+++|++++|-|- |..|..+|+.|.+.|++++.++.+...++....+.
T Consensus        14 ~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~   82 (230)
T d1leha1          14 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE   82 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc
Confidence            34445544433322 2223456789999999987 78999999999999999999999988877665543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.41  Score=35.04  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCC--eEEEEeCChhHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRA--RLVLVARRERQLREVAD   89 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~~~~~~~~~   89 (287)
                      ++.|.|. |-+|.++|+.|.+.|.  +|+..+++++.++...+
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            4778875 8999999999999996  78889999888766544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.031  Score=41.21  Aligned_cols=34  Identities=9%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ++.|.|+ |.+|..++..|++.|++|.+++|+.++
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            4788888 999999999999999999999998764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.83  E-value=0.092  Score=40.27  Aligned_cols=73  Identities=21%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ..++.||+++=.|+++|+   ++..++..|+ +|+.++.++..++.+.+..     .++.++.+|+.+.           
T Consensus        44 ~~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l-----------  104 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI-----------  104 (197)
T ss_dssp             HTSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC-----------
T ss_pred             cCCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc-----------
Confidence            367899999999999883   3345777786 6999999988776554432     2477888887532           


Q ss_pred             HhcCCccEEEEcccc
Q 042560          121 EHFGRLDHLVTNAGV  135 (287)
Q Consensus       121 ~~~~~idvli~nag~  135 (287)
                        .++.|++|.|..+
T Consensus       105 --~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 --SGKYDTWIMNPPF  117 (197)
T ss_dssp             --CCCEEEEEECCCC
T ss_pred             --CCcceEEEeCccc
Confidence              2589999999865

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.83  E-value=0.77  Score=37.42  Aligned_cols=81  Identities=16%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           46 AGKVVLITGASSG-IGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        46 ~~k~alVtGa~~g-iG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      +++.+|=..+.+| ++.    .+++.|++|+.++.+...++.+.+..+.++  ..++.++..|+      -+.++...++
T Consensus       132 ~~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~------~~~l~~~~~~  201 (309)
T d2igta1         132 RPLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA------MKFIQREERR  201 (309)
T ss_dssp             SCCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH------HHHHHHHHHH
T ss_pred             CCCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH------HHhHHHHhhc
Confidence            5677776655544 333    345679999999999999888877776554  23578888776      3344444455


Q ss_pred             cCCccEEEEccccC
Q 042560          123 FGRLDHLVTNAGVV  136 (287)
Q Consensus       123 ~~~idvli~nag~~  136 (287)
                      ..+.|++|.+.-..
T Consensus       202 ~~~fD~IilDPP~f  215 (309)
T d2igta1         202 GSTYDIILTDPPKF  215 (309)
T ss_dssp             TCCBSEEEECCCSE
T ss_pred             CCCCCEEEECCCcc
Confidence            56899999987543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.78  E-value=0.21  Score=38.63  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++..|+++|--.++..+++  |.+|+.+.++++-.+...+.++..+-.++.++..|..+-          ....++
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g----------~~~~~p  145 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----------FPPKAP  145 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----------CGGGCC
T ss_pred             ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC----------CcccCc
Confidence            57789999999999999888887  567999999988888888888877777899999997531          112368


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      .|.++.+++.
T Consensus       146 fD~Iiv~~a~  155 (215)
T d1jg1a_         146 YDVIIVTAGA  155 (215)
T ss_dssp             EEEEEECSBB
T ss_pred             ceeEEeeccc
Confidence            8999988776

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.78  E-value=0.14  Score=38.69  Aligned_cols=43  Identities=23%  Similarity=0.223  Sum_probs=37.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQL   84 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~   84 (287)
                      ....+.+|++.|.|. |.||+++++.+...|++|+..++...+.
T Consensus        38 ~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1          38 SGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             CBCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             ccccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChh
Confidence            456688999999996 8999999999999999999999876543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.045  Score=41.05  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ....+++||.++|.|-|.=.|+-++..|+++|++|..+..+
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            45568999999999999999999999999999999887654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.06  Score=40.08  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..++.||.++|.|-|.-.|+-++..|.++|++|..+......
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~   73 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN   73 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccch
Confidence            457899999999999999999999999999999888665443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.52  E-value=0.044  Score=41.82  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      ++.|.|| |..|.++|..|++.|++|.+.+|+++..++..+
T Consensus         9 KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~   48 (189)
T d1n1ea2           9 KAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE   48 (189)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHH
T ss_pred             eEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Confidence            4778888 679999999999999999999999887766544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.19  Score=41.10  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=54.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhc-CCCeeEEEeecCCCHHHHHHHHHHH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELM-GSPFALAIPADVSKVEDCKHFVDVT  119 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~  119 (287)
                      ....+|++++-.|++.|+   ++..+++.|+ +|+.++.++... ...+..... ...++.++..|+.+...        
T Consensus        31 ~~~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~--------   98 (311)
T d2fyta1          31 PHIFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL--------   98 (311)
T ss_dssp             GGGTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC--------
T ss_pred             cccCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC--------
Confidence            345689999999999886   5667788897 799999887643 334444333 34578899888876432        


Q ss_pred             HHhcCCccEEEEcc
Q 042560          120 MEHFGRLDHLVTNA  133 (287)
Q Consensus       120 ~~~~~~idvli~na  133 (287)
                        ...+.|+++...
T Consensus        99 --~~~~~D~Ivse~  110 (311)
T d2fyta1          99 --PVEKVDVIISEW  110 (311)
T ss_dssp             --SCSCEEEEEECC
T ss_pred             --ccccceEEEEee
Confidence              124789998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.26  E-value=0.23  Score=38.24  Aligned_cols=80  Identities=18%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.+++-.|+++|--.++..++...+.+|+.++.+++.++...+.++..+-.++..+..|..+..          ...++
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~----------~~~~~  144 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV----------PEFSP  144 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----------GGGCC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc----------ccccc
Confidence            57899999999988777766666667799999999999988888887766667888777754311          12257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      .|+++.+++.
T Consensus       145 fD~I~~~~~~  154 (213)
T d1dl5a1         145 YDVIFVTVGV  154 (213)
T ss_dssp             EEEEEECSBB
T ss_pred             hhhhhhhccH
Confidence            8999888764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.21  E-value=0.071  Score=41.64  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ..|.++|.|| |-.|.++|..|+++|++|.+++|+.
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4567999998 7899999999999999999999853

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.081  Score=39.53  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=39.2

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHH
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLR   85 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~   85 (287)
                      ...+++||.++|.|.|.-.|+-++..|+++|++|..+......+.
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~   77 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD   77 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred             hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence            345789999999999999999999999999999999887655544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.058  Score=46.62  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      +++.+++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence            45678999999 7899999999999998 78888764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.89  E-value=0.11  Score=37.68  Aligned_cols=40  Identities=13%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             EEEecCCChHHHHHHHHHHHcC-CeEEEEeCChhHHHHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRR-ARLVLVARRERQLREVADQ   90 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G-~~vv~~~r~~~~~~~~~~~   90 (287)
                      +.+.|+ |-+|.++++.|.+.| +++.+++|++++.+++.++
T Consensus         3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~   43 (152)
T d1yqga2           3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE   43 (152)
T ss_dssp             EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred             EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence            556666 999999999999888 7999999999887776554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.79  E-value=0.7  Score=33.24  Aligned_cols=79  Identities=22%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +++|+.++=.|+++|   +++.+.+.+|+ +|+.++.++...+...+.++..+ ..++.+++.|..+      ..   ..
T Consensus        12 ~~~g~~vlDl~~GtG---~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l---~~   79 (152)
T d2esra1          12 YFNGGRVLDLFAGSG---GLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AI---DC   79 (152)
T ss_dssp             CCCSCEEEEETCTTC---HHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HH---HH
T ss_pred             hCCCCeEEEcCCccC---HHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------cc---cc
Confidence            468999887877766   23334567787 89999999999888877776654 3468888888432      22   22


Q ss_pred             hcCCccEEEEccc
Q 042560          122 HFGRLDHLVTNAG  134 (287)
Q Consensus       122 ~~~~idvli~nag  134 (287)
                      ..++.|+++.++.
T Consensus        80 ~~~~fDiIf~DPP   92 (152)
T d2esra1          80 LTGRFDLVFLDPP   92 (152)
T ss_dssp             BCSCEEEEEECCS
T ss_pred             cccccceeEechh
Confidence            3357899988763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.70  E-value=0.093  Score=36.75  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      +++.++|.|| |-+|..+|..|+++|.+|.++.+++.
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            3578888887 89999999999999999999998765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.63  E-value=0.09  Score=38.37  Aligned_cols=41  Identities=12%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      +.+. |+|-+|.++++.|.+.|+++++.+|+.++.++..++.
T Consensus         3 Ig~I-G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~   43 (152)
T d2ahra2           3 IGII-GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL   43 (152)
T ss_dssp             EEEE-CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred             EEEE-eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence            3444 4589999999999999999999999998887766554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.60  E-value=0.098  Score=36.70  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ++|.++|.|| |.+|..+|..|++.|.+|.++.+...
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence            5678888877 79999999999999999999988653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.32  E-value=0.13  Score=39.14  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ....+.||++.|.|. |.||+.+|+.+...|++|+..++...
T Consensus        43 ~~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          43 GAARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TCCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence            356789999999987 89999999999999999999988654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.4  Score=32.82  Aligned_cols=70  Identities=17%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      .+.++.|.|| |=+|+-++....+.|+++++.+.+++......         --..+..|..|.+.+.++...-     .
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~~v---------a~~~i~~~~~d~~~l~~~~~~~-----~   74 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMHV---------AHRSHVINMLDGDALRRVVELE-----K   74 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGGG---------SSEEEECCTTCHHHHHHHHHHH-----C
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchhhc---------CCeEEECCCCCHHHHHHHHHhh-----C
Confidence            3457999995 78999999999999999999998766432110         1246778999999888887542     5


Q ss_pred             ccEEE
Q 042560          126 LDHLV  130 (287)
Q Consensus       126 idvli  130 (287)
                      +|++.
T Consensus        75 ~DviT   79 (111)
T d1kjqa2          75 PHYIV   79 (111)
T ss_dssp             CSEEE
T ss_pred             CceEE
Confidence            78774

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.99  E-value=0.079  Score=42.10  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      +|+|+|.|| |--|.++|.+|+++|++|.++.++.
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            588999988 6778999999999999999998753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.82  E-value=0.13  Score=35.61  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .|.++|.|| |-+|..+|..|++.|.+|.++.|...
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            477888888 89999999999999999999988755

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.78  E-value=0.11  Score=39.81  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..+.||++.|.|- |.||+.+|+.|...|++|+..++....
T Consensus        39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1          39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNP   78 (197)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             ccccCCeEEEecc-cccchhHHHhHhhhcccccccCccccc
Confidence            5688999999998 899999999999999999999876543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.73  E-value=0.79  Score=34.03  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +|.+++=.|+++|   .++..|++.+.+|+.++.+++.++.+.+..+..+- .++.++++|..          +......
T Consensus        33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~~   99 (186)
T d1l3ia_          33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKIP   99 (186)
T ss_dssp             TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTSC
T ss_pred             CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hcccccC
Confidence            5778888888877   34456677788999999999999988888877663 47888888742          1122345


Q ss_pred             CccEEEEcc
Q 042560          125 RLDHLVTNA  133 (287)
Q Consensus       125 ~idvli~na  133 (287)
                      ..|.++.+.
T Consensus       100 ~~D~v~~~~  108 (186)
T d1l3ia_         100 DIDIAVVGG  108 (186)
T ss_dssp             CEEEEEESC
T ss_pred             CcCEEEEeC
Confidence            789888764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.37  E-value=0.57  Score=35.07  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=36.6

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVAD   89 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~   89 (287)
                      +.-.++|.|| |-.|++-++-....|++|.+.|.+.+.+++..+
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence            3457899998 788999999999999999999999988776654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.30  E-value=0.26  Score=36.22  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ..+.||+++|.|= |-+|+.+|.+|...|++|+++..++-.
T Consensus        19 ~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~   58 (163)
T d1v8ba1          19 FLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC   58 (163)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred             ceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence            4579999999998 789999999999999999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.14  Score=35.98  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      .|.++|.|| |-||..+|..|++.|.+|.++.|+.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            367889988 6899999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.08  E-value=0.19  Score=34.89  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ..+.++|.|| |-||..+|..|++.|.+|.++.++..
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            3477888888 89999999999999999999988643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.99  E-value=0.14  Score=35.59  Aligned_cols=35  Identities=26%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .|.++|.|| |-+|..+|..|++.|.+|.++.|...
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence            477888888 89999999999999999999998643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.90  E-value=0.15  Score=35.48  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ++.++|.|| |-+|..+|..|++.|.+|.++.|++
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            467888887 8999999999999999999998864

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=90.81  E-value=0.37  Score=36.67  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ...+.||++.|.|. |.||+.+++.|...|++|+..++...
T Consensus        40 ~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          40 GKELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence            46788999999998 78999999999999999999998644

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=90.72  E-value=0.47  Score=37.59  Aligned_cols=74  Identities=24%  Similarity=0.245  Sum_probs=54.1

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      .+|++++=.|+++|+   ++..+++.|++|+.++.++..++.+.+..+.++- +..++..|+.+      .     ...+
T Consensus       119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~------~-----~~~~  183 (254)
T d2nxca1         119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEA------A-----LPFG  183 (254)
T ss_dssp             CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHH------H-----GGGC
T ss_pred             CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccc------c-----cccc
Confidence            478899999999986   3345677899999999999999988887776653 45666666421      1     1236


Q ss_pred             CccEEEEcc
Q 042560          125 RLDHLVTNA  133 (287)
Q Consensus       125 ~idvli~na  133 (287)
                      +.|+++.|.
T Consensus       184 ~fD~V~ani  192 (254)
T d2nxca1         184 PFDLLVANL  192 (254)
T ss_dssp             CEEEEEEEC
T ss_pred             ccchhhhcc
Confidence            789998773

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.70  E-value=0.24  Score=34.13  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=33.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ..++|.++|.|| |-+|..+|..|++.|.+|.++.|.+.
T Consensus        19 ~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          19 YEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             SCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             hCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            346788999888 89999999999999999999988654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=90.66  E-value=3.5  Score=33.34  Aligned_cols=117  Identities=15%  Similarity=0.027  Sum_probs=70.2

Q ss_pred             CCCEEEEecCCC-hHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASS-GIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        46 ~~k~alVtGa~~-giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      +|+.++=..+.. |++.    ..+..|+ .|+.++.++..++-..+..+.++  ..++.++..|+      .+.++...+
T Consensus       144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~------~~~l~~~~~  213 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV------FDYFKYARR  213 (317)
T ss_dssp             BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH------HHHHHHHHH
T ss_pred             CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH------HHHHHHHHh
Confidence            588887666654 4443    3455787 69999999999888888776654  24678888886      233344445


Q ss_pred             hcCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCC
Q 042560          122 HFGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASA  185 (287)
Q Consensus       122 ~~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~  185 (287)
                      +..+.|++|.++......+       +.....    ......+.+.+++.+++ +|.+++ +|.
T Consensus       214 ~~~~fD~Ii~DPP~f~~~~-------~~~~~~----~~~~~~L~~~a~~ll~p-gG~l~~-~sc  264 (317)
T d2b78a2         214 HHLTYDIIIIDPPSFARNK-------KEVFSV----SKDYHKLIRQGLEILSE-NGLIIA-STN  264 (317)
T ss_dssp             TTCCEEEEEECCCCC------------CCCCH----HHHHHHHHHHHHHTEEE-EEEEEE-EEC
T ss_pred             hcCCCCEEEEcChhhccch-------hHHHHH----HHHHHHHHHHHHHHcCC-CCEEEE-EeC
Confidence            5568999999965332211       111111    12334566777777665 455554 443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.17  Score=34.87  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      |.++|.|| |-+|..+|..|++.|.+|.++.|.+.
T Consensus        22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence            56778877 89999999999999999999998754

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.62  E-value=0.35  Score=36.62  Aligned_cols=80  Identities=10%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCccEE
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLDHL  129 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~idvl  129 (287)
                      +=+|-|+||...++...+ . +.+|+.++++++.++...+.++..+ .++.++..++++...+   ....  ..+++|.+
T Consensus        28 lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~---~~~~--~~~~vdgI   99 (192)
T d1m6ya2          28 LDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFL---LKTL--GIEKVDGI   99 (192)
T ss_dssp             EETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHH---HHHT--TCSCEEEE
T ss_pred             EEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHH---HHHc--CCCCccee
Confidence            335777788888888876 2 5699999999999988877766544 4699999988765443   2211  13689999


Q ss_pred             EEccccCC
Q 042560          130 VTNAGVVP  137 (287)
Q Consensus       130 i~nag~~~  137 (287)
                      +..-|+..
T Consensus       100 l~DlGvSs  107 (192)
T d1m6ya2         100 LMDLGVST  107 (192)
T ss_dssp             EEECSCCH
T ss_pred             eeccchhH
Confidence            99999854

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.60  E-value=0.13  Score=38.56  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCe-EEEEeCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRAR-LVLVARR   80 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~-vv~~~r~   80 (287)
                      +|+++|.|| |-.|..+|..|+++|++ |.+..++
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEec
Confidence            577888888 78999999999999994 8888876

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.52  E-value=0.18  Score=35.19  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .|.++|.|| |-||..+|..|++.|.+|.++.+++.
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence            467888888 79999999999999999999988654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.45  E-value=0.19  Score=37.58  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=29.0

Q ss_pred             EEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           49 VVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ++.|.|| |..|.++|..|++.|.+|.+.+|..+
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            4678887 89999999999999999999998654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.44  E-value=0.85  Score=34.10  Aligned_cols=76  Identities=13%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      ++++.+|=.|++.|.   .+..|+++|++|+.++-++..++.+.+.....+-..+.+...|+.+..-           -+
T Consensus        29 ~~~grvLDiGcG~G~---~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-----------~~   94 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGR---NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-----------DG   94 (198)
T ss_dssp             SCSCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-----------CC
T ss_pred             CCCCcEEEECCCCCH---HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-----------cc
Confidence            456678999997664   5568889999999999999998887777766554457777888765431           14


Q ss_pred             CccEEEEccc
Q 042560          125 RLDHLVTNAG  134 (287)
Q Consensus       125 ~idvli~nag  134 (287)
                      ..|+++.+.-
T Consensus        95 ~fD~I~~~~~  104 (198)
T d2i6ga1          95 EYDFILSTVV  104 (198)
T ss_dssp             CEEEEEEESC
T ss_pred             cccEEEEeee
Confidence            6788886653

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.49  Score=35.55  Aligned_cols=41  Identities=17%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ....+.++++.|.|- |.||+.+++.+...|++|+..++...
T Consensus        38 ~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          38 GSFEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             -CCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccccceEEEEeec-ccchhhhhhhcccccceEeecccccc
Confidence            445788999999976 89999999999999999999988543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.28  E-value=0.25  Score=37.46  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      ...++||++.|.|. |.||+.+++.+...|++|+..++....
T Consensus        42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1          42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             cceecccceEEeec-ccchHHHHHHHHhhccccccccccccc
Confidence            45677999999998 899999999999999999999886543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.17  E-value=0.27  Score=36.94  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+.||++.|.|. |.||+.+++.+...|++|+..+|...
T Consensus        39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCceEEEecc-ccccccceeeeecccccccccccccc
Confidence            478999999999 56999999999999999999998653

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=1.6  Score=31.43  Aligned_cols=66  Identities=14%  Similarity=0.092  Sum_probs=42.0

Q ss_pred             CEEEEecCCChHHHHHHHHHHHc--CCeEEEE--eCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           48 KVVLITGASSGIGKHLAYEYARR--RARLVLV--ARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~--G~~vv~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      |.+.|.|+||.||.....-+.+.  .++|+.+  .+|.+.+.+...+++.    +..    -+.|++..+.+.+...+
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~p----k~v----~i~d~~~~~~l~~~l~~   71 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSP----RYA----VMDDEASAKLLKTMLQQ   71 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCC----SEE----EESSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhh----ccc----ccccHHHHHHHHHHhhh
Confidence            46899999999999999988886  4677654  3455566655555521    111    22445555555554444

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.98  E-value=0.21  Score=34.30  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=30.0

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+.++|.|| |-+|..+|..|++.|.+|.++.+.+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            367778777 89999999999999999999988643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.98  E-value=0.14  Score=40.54  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ++|.|| |-.|.++|.+|+++|.+|++++++.
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            778877 8999999999999999999999863

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.57  Score=37.52  Aligned_cols=80  Identities=15%  Similarity=0.088  Sum_probs=57.6

Q ss_pred             CCEEEEecCCC-hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASS-GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~-giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +..++=.|+++ .||.+++.++  ...+|+.++.++..++-+.+..+..+-.++.+++.|+.+.-           ..++
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~-----------~~~~  175 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL-----------AGQQ  175 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG-----------TTCC
T ss_pred             ccceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc-----------CCCc
Confidence            34566666664 4566665543  35799999999999988888877766556899999986532           1147


Q ss_pred             ccEEEEccccCCCC
Q 042560          126 LDHLVTNAGVVPMC  139 (287)
Q Consensus       126 idvli~nag~~~~~  139 (287)
                      .|++|.|..+.+..
T Consensus       176 fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         176 FAMIVSNPPYIDEQ  189 (274)
T ss_dssp             EEEEEECCCCBCTT
T ss_pred             eeEEEecchhhhhh
Confidence            99999999887543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=89.78  E-value=0.73  Score=35.14  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=70.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.++|=.|++.|.-   +..|+++|++|+.++-++..++.+.+.....+..++.+++.|..+..-          ..+.
T Consensus        15 ~~~rVLDiGcG~G~~---~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~----------~~~~   81 (231)
T d1vl5a_          15 GNEEVLDVATGGGHV---ANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF----------TDER   81 (231)
T ss_dssp             SCCEEEEETCTTCHH---HHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS----------CTTC
T ss_pred             CcCEEEEecccCcHH---HHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccc----------cccc
Confidence            367899999988854   456788899999999999988887777766666678899888866421          1257


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEE
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVV  182 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~i  182 (287)
                      .|+++.+......         ++           +...++.+...|++ +|+++..
T Consensus        82 fD~v~~~~~l~~~---------~d-----------~~~~l~~~~r~Lkp-gG~l~i~  117 (231)
T d1vl5a_          82 FHIVTCRIAAHHF---------PN-----------PASFVSEAYRVLKK-GGQLLLV  117 (231)
T ss_dssp             EEEEEEESCGGGC---------SC-----------HHHHHHHHHHHEEE-EEEEEEE
T ss_pred             ccccccccccccc---------CC-----------HHHHHHHHHHhcCC-CcEEEEE
Confidence            8998877654221         11           22445666666765 5677764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.78  E-value=0.2  Score=41.12  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ++|.++|.|| |--|..+|..|+++|.+|.++.++..
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            4788999998 67889999999999999999987643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.78  E-value=0.39  Score=37.40  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             CCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           43 EDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        43 ~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ...+++++|=.|++.|.   ++..|+++|.+|+.++.+++-++.+.+.....+. ++.++..|+.+.+           .
T Consensus        34 ~~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~-----------~   98 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLN-----------I   98 (246)
T ss_dssp             TTCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCC-----------C
T ss_pred             hCCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccccCc-cceeeccchhhhc-----------c
Confidence            45677889999999885   7889999999999999999988877776655443 6888888876532           1


Q ss_pred             cCCccEEEEcc
Q 042560          123 FGRLDHLVTNA  133 (287)
Q Consensus       123 ~~~idvli~na  133 (287)
                      .++.|+++...
T Consensus        99 ~~~fD~i~~~~  109 (246)
T d1y8ca_          99 NRKFDLITCCL  109 (246)
T ss_dssp             SCCEEEEEECT
T ss_pred             cccccccceee
Confidence            24789887643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.22  Score=37.41  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+.|.++|.|| |--|.+.|..|+++|++|.+..++..
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence            45788999998 78899999999999999999998643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.62  E-value=0.72  Score=37.54  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTME  121 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~  121 (287)
                      ..+|+++|-.|++.|+   ++..+++.|+ +|+.++.++. .....+..+.++ ..++.++..|..+.+.          
T Consensus        31 ~~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~----------   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL----------   96 (316)
T ss_dssp             HHTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC----------
T ss_pred             cCCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc----------
Confidence            4589999999999885   5667788887 6888997754 344444444433 4568899988876432          


Q ss_pred             hcCCccEEEEcc
Q 042560          122 HFGRLDHLVTNA  133 (287)
Q Consensus       122 ~~~~idvli~na  133 (287)
                      ...++|+++...
T Consensus        97 ~~~~~D~ivs~~  108 (316)
T d1oria_          97 PVEKVDIIISEW  108 (316)
T ss_dssp             SSSCEEEEEECC
T ss_pred             ccceeEEEeeee
Confidence            124789988764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.50  E-value=0.24  Score=35.86  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=29.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +-|.| .|-+|.++++.|.++|++|+..+++..+....
T Consensus         3 IgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~   39 (152)
T d1i36a2           3 VGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE   39 (152)
T ss_dssp             EEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred             EEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence            34444 49999999999999999999988876655433

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.17  E-value=0.38  Score=36.21  Aligned_cols=41  Identities=22%  Similarity=0.132  Sum_probs=36.0

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ...++.++++.|.|. |.||+++++.|...|.+|+..++...
T Consensus        38 ~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          38 HAYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             TCCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cceeccccceeeccc-cccchhhhhhhhccCceEEEEeeccc
Confidence            356789999999997 89999999999999999999998644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.09  E-value=0.73  Score=35.65  Aligned_cols=72  Identities=19%  Similarity=0.111  Sum_probs=54.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +++++|=.|+++|   ..+..|+++|++|+.++.++.-++.+.+.....+. ++.+++.|+.+.+-           -+.
T Consensus        41 ~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~-----------~~~  105 (251)
T d1wzna1          41 EVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF-----------KNE  105 (251)
T ss_dssp             CCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC-----------CSC
T ss_pred             CCCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccccc-cchheehhhhhccc-----------ccc
Confidence            5678999999987   45677999999999999999888877777665443 68889998765321           146


Q ss_pred             ccEEEEc
Q 042560          126 LDHLVTN  132 (287)
Q Consensus       126 idvli~n  132 (287)
                      .|.++..
T Consensus       106 fD~I~~~  112 (251)
T d1wzna1         106 FDAVTMF  112 (251)
T ss_dssp             EEEEEEC
T ss_pred             cchHhhh
Confidence            8887764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.01  E-value=0.35  Score=34.89  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=30.1

Q ss_pred             CCCEEEEe-cCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLIT-GASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVt-Ga~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .++.++|. .+++-||.++|..|+++|++|.++.+...
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            45555555 45689999999999999999999988754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.93  E-value=0.3  Score=37.14  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=31.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHH
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREV   87 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~   87 (287)
                      +.|.| .|-+|..+|..|++.|++|+..+.+++..+..
T Consensus         3 I~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l   39 (202)
T d1mv8a2           3 ISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI   39 (202)
T ss_dssp             EEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence            45554 58999999999999999999999998876554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.77  E-value=0.34  Score=34.24  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .++.++|.|| |-+|..+|..|.+.|.+|.++.+...
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            4678888887 89999999999999999999988654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.56  E-value=0.27  Score=34.25  Aligned_cols=32  Identities=22%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             CEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           48 KVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        48 k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      +.++|.|| |-||..+|..|.+.|.+|.++.|+
T Consensus        21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            56778887 899999999999999999999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.49  E-value=0.31  Score=35.45  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC--eEEEEeCCh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRA--RLVLVARRE   81 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~--~vv~~~r~~   81 (287)
                      +||+++|.|| |-.|..+|..|.+.+.  +|.++++++
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999 6789999999999885  788887764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.47  E-value=0.41  Score=35.41  Aligned_cols=44  Identities=11%  Similarity=0.019  Sum_probs=38.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAE   92 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~   92 (287)
                      +|+++|..|++.|   ..+..|+++|++|+.++.++..++.+.+..+
T Consensus        20 ~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~   63 (201)
T d1pjza_          20 PGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERG   63 (201)
T ss_dssp             TTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHC
T ss_pred             CCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhc
Confidence            7889999999988   3777999999999999999999888776653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.44  E-value=0.25  Score=34.45  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQ   83 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~   83 (287)
                      .|.++|.|| |-||..+|..|.+.|.+|.++.|++.-
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            477888888 899999999999999999999886553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=88.43  E-value=0.33  Score=38.89  Aligned_cols=35  Identities=29%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      +.|.|+|.|| |--|.++|..|+++|++|.++.++.
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5678999998 5669999999999999999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=88.17  E-value=2.9  Score=30.42  Aligned_cols=79  Identities=20%  Similarity=0.138  Sum_probs=49.1

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|+.++=.|+++|.   ++.+.+++|++|+.++.++...+-+.+.++..+-. ..+...|   .+.   +.........+
T Consensus        41 ~g~~vLDl~~G~G~---~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~-~~v~~~~---~d~---~~~~~~~~~~~  110 (171)
T d1ws6a1          41 RRGRFLDPFAGSGA---VGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG-ARVVALP---VEV---FLPEAKAQGER  110 (171)
T ss_dssp             TCCEEEEETCSSCH---HHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC-CEEECSC---HHH---HHHHHHHTTCC
T ss_pred             CCCeEEEeccccch---hhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc-cceeeee---hhc---ccccccccCCc
Confidence            56666666666552   34456678999999999999988887777665432 2232222   222   22233334457


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      .|+++.++.
T Consensus       111 fD~If~DPP  119 (171)
T d1ws6a1         111 FTVAFMAPP  119 (171)
T ss_dssp             EEEEEECCC
T ss_pred             cceeEEccc
Confidence            999998864

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=1.1  Score=36.01  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=21.2

Q ss_pred             ChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           57 SGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        57 ~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      |-.|.++|+.|..+|+.|+++.+.
T Consensus        46 Gk~G~alA~~~~~~Ga~V~li~g~   69 (290)
T d1p9oa_          46 GRRGATSAEAFLAAGYGVLFLYRA   69 (290)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHcCCEEEEEecC
Confidence            578999999999999999988643

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=88.05  E-value=2.7  Score=28.44  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=53.4

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCH-HHHHHHHHHHHHhcCC
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKV-EDCKHFVDVTMEHFGR  125 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~~~  125 (287)
                      ||+++|.--..-+...+...|.+.|++|+....+....-+...   ...   ...+..|+.=+ .+=-++++++++....
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~---~~~---~dliilD~~mp~~~G~e~~~~ir~~~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK---ELK---PDIVTMDITMPEMNGIDAIKEIMKIDPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---HHC---CSEEEEECSCGGGCHHHHHHHHHHHCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHH---hcc---CCEEEEecCCCCCCHHHHHHHHHHhCCC
Confidence            7899999999999999999999999998866655544322222   222   23444555432 2334666777777666


Q ss_pred             ccEEEEcc
Q 042560          126 LDHLVTNA  133 (287)
Q Consensus       126 idvli~na  133 (287)
                      +-+++..+
T Consensus        75 ~pvi~ls~   82 (118)
T d1u0sy_          75 AKIIVCSA   82 (118)
T ss_dssp             CCEEEEEC
T ss_pred             CcEEEEEc
Confidence            77766654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.41  Score=36.98  Aligned_cols=43  Identities=19%  Similarity=0.114  Sum_probs=36.9

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQA   91 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~   91 (287)
                      +++++|..|++.|   ..+..|+++|++|+.++-++..++.+.++.
T Consensus        45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~   87 (229)
T d2bzga1          45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ   87 (229)
T ss_dssp             CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence            6789999999987   458889999999999999999987766654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.82  E-value=0.33  Score=37.84  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=30.4

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ..++++|.|| |--|..+|..|+++|.+|+++.|+.+
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3567889998 67789999999999999999998643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.65  E-value=0.44  Score=36.84  Aligned_cols=36  Identities=22%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      .-.+|.++|.|| |--|...|..|+++|++|.++.++
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeec
Confidence            346789999998 677999999999999999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.54  E-value=0.27  Score=37.43  Aligned_cols=31  Identities=10%  Similarity=0.158  Sum_probs=27.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      ++|.|| |--|..+|..|+++|.+|.++.++.
T Consensus         8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            788886 7889999999999999999998863

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.34  E-value=0.42  Score=33.36  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           47 GKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      .+.++|.|| |-||..+|..|++.|.+|.++.+..
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            578889988 8999999999999999999998864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.28  E-value=0.22  Score=33.81  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      .+..+++||+++|.|++ --|..+|..|++.+.+++...|+..
T Consensus        25 ~~~~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          25 REPELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             CCGGGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             cchhhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecCc
Confidence            36678899999999985 7888999999998888887777543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.17  Score=38.43  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             CEEEEecCCChHHHH-----HHHHHHHcCCeEEEEe
Q 042560           48 KVVLITGASSGIGKH-----LAYEYARRRARLVLVA   78 (287)
Q Consensus        48 k~alVtGa~~giG~a-----ia~~L~~~G~~vv~~~   78 (287)
                      |.++|||.++|.|+.     +|..|+++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            789999999999985     5778999999999986

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.12  E-value=3.8  Score=30.12  Aligned_cols=82  Identities=10%  Similarity=0.090  Sum_probs=55.6

Q ss_pred             CCCCCEEEEecCC-ChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCC-CeeEEEeecCCCHHHHHHHHHHHH
Q 042560           44 DVAGKVVLITGAS-SGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGS-PFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        44 ~~~~k~alVtGa~-~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      ...|+.++=..|+ |++|.+    .+++|+ .|++++.+....+.+.+.++..+. .++.++..|+.      +.+++..
T Consensus        39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~~l~~~~  108 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------RALEQFY  108 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------HHHHHHH
T ss_pred             hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------hhhhhhc
Confidence            4567777655554 456664    566888 699999999988887777765442 36788888862      3444444


Q ss_pred             HhcCCccEEEEcccc
Q 042560          121 EHFGRLDHLVTNAGV  135 (287)
Q Consensus       121 ~~~~~idvli~nag~  135 (287)
                      +...+.|+++..+.+
T Consensus       109 ~~~~~fDlIflDPPY  123 (182)
T d2fhpa1         109 EEKLQFDLVLLDPPY  123 (182)
T ss_dssp             HTTCCEEEEEECCCG
T ss_pred             ccCCCcceEEechhh
Confidence            444578999877643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.04  E-value=3.5  Score=28.98  Aligned_cols=87  Identities=8%  Similarity=-0.052  Sum_probs=54.9

Q ss_pred             CCCEEEEecCC---ChHHHHHHHHHHHcCCeEEEEeCChhHHHH--HHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGAS---SGIGKHLAYEYARRRARLVLVARRERQLRE--VADQAELMGSPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~---~giG~aia~~L~~~G~~vv~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +.|.+.|.|||   +..|..+.+.|.+.|++|+.+..+......  ....+.... ..+..+. =+...+.+.++++++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp-~~iD~v~-i~vp~~~~~~~~~e~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIP-DKIEVVD-LFVKPKLTMEYVEQAI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCS-SCCSEEE-ECSCHHHHHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccC-ccceEEE-EEeCHHHHHHHHHHHH
Confidence            46889999999   579999999999999999988665332110  011111111 1122221 1245777788888777


Q ss_pred             HhcCCccEEEEccccC
Q 042560          121 EHFGRLDHLVTNAGVV  136 (287)
Q Consensus       121 ~~~~~idvli~nag~~  136 (287)
                      +.  ++..++...|..
T Consensus        96 ~~--g~k~v~~~~G~~  109 (139)
T d2d59a1          96 KK--GAKVVWFQYNTY  109 (139)
T ss_dssp             HH--TCSEEEECTTCC
T ss_pred             Hh--CCCEEEEecccc
Confidence            75  456777777653

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=87.02  E-value=0.41  Score=38.02  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             CCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 042560           42 AEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR   79 (287)
Q Consensus        42 ~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r   79 (287)
                      ..+++|++++|.| .|-.|..+++.|.+.|++|+.++.
T Consensus        31 ~~~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          31 NDTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TCCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            4578999999999 589999999999999999987754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.96  E-value=1.9  Score=33.06  Aligned_cols=80  Identities=13%  Similarity=0.054  Sum_probs=60.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC-----CCeeEEEeecCCCHHHHHHHHHHHH
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG-----SPFALAIPADVSKVEDCKHFVDVTM  120 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~  120 (287)
                      +|..+|-.|+++|.-.++..++.....+|+.++++++-++.+.+.++..+     ..++.+...|..+..          
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~----------  145 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY----------  145 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC----------
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc----------
Confidence            57899999999999999988888888899999999998887766665422     235677777754211          


Q ss_pred             HhcCCccEEEEcccc
Q 042560          121 EHFGRLDHLVTNAGV  135 (287)
Q Consensus       121 ~~~~~idvli~nag~  135 (287)
                      ...++.|+++.+++.
T Consensus       146 ~~~~~fD~I~~~~~~  160 (224)
T d1i1na_         146 AEEAPYDAIHVGAAA  160 (224)
T ss_dssp             GGGCCEEEEEECSBB
T ss_pred             chhhhhhhhhhhcch
Confidence            122578999988764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.95  E-value=1.2  Score=32.02  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCC-----CeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGS-----PFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +-+.|- |-+|.++|++|.+.|+.+ ...|+.++.++..++......     .....+...+.+.+.+....+.+.+...
T Consensus         3 Ig~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           3 VAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             EEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             EEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            344555 889999999999988765 577887776666554421100     0122333445556666666666555443


Q ss_pred             CccEEEEcc
Q 042560          125 RLDHLVTNA  133 (287)
Q Consensus       125 ~idvli~na  133 (287)
                      +-.++|.+.
T Consensus        81 ~~~~iid~s   89 (156)
T d2cvza2          81 EGTYWVDAT   89 (156)
T ss_dssp             TTEEEEECS
T ss_pred             ccccccccc
Confidence            434444433

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=86.89  E-value=0.3  Score=38.65  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=26.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ++|.|| |-.|.++|.+|+++|.+|+++++.
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence            677777 788999999999999999999874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.75  E-value=1.7  Score=32.52  Aligned_cols=75  Identities=16%  Similarity=0.057  Sum_probs=55.5

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      ++.++|=.|+++|.   ++..|++.|++|+.++.+...++.+.+.....+ .++..+..|..+...          ..+.
T Consensus        37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~~l~~----------~~~~  102 (226)
T d1ve3a1          37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF----------EDKT  102 (226)
T ss_dssp             SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS----------CTTC
T ss_pred             CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcccc-ccccccccccccccc----------cCcC
Confidence            44678999999887   667888999999999999998887777665554 356777788765321          1247


Q ss_pred             ccEEEEccc
Q 042560          126 LDHLVTNAG  134 (287)
Q Consensus       126 idvli~nag  134 (287)
                      .|+++.+..
T Consensus       103 fD~I~~~~~  111 (226)
T d1ve3a1         103 FDYVIFIDS  111 (226)
T ss_dssp             EEEEEEESC
T ss_pred             ceEEEEecc
Confidence            899887654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.24  E-value=0.37  Score=36.81  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             HHhhhhccCCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCCh
Q 042560           33 LHFVIRTINAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVARRE   81 (287)
Q Consensus        33 ~~~~~~~~~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~   81 (287)
                      +|...+.++..+++||.++|.|++ --|..+|..+++.+++++.+.|+.
T Consensus        18 ~HS~~~~~~~~~~~gK~V~VvG~G-~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          18 YHTGNWPHEPVDFSGQRVGVIGTG-SSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             EEGGGCCSSCCCCBTCEEEEECCS-HHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             EecCcCCCCCCCCCCCEEEEECCC-ccHHHHHHHHHhhhcccccccccc
Confidence            344444456678899999999985 458999999999999988887764

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=86.13  E-value=0.93  Score=35.48  Aligned_cols=35  Identities=29%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR   79 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r   79 (287)
                      +++|++++|-| -|-.|..+|+.|.+.|++|+.++.
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            78999999998 589999999999999999987764

>d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.05  E-value=5.2  Score=29.69  Aligned_cols=142  Identities=13%  Similarity=0.043  Sum_probs=77.6

Q ss_pred             CCCCEEEEecCC--ChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGAS--SGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~--~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      ..+++.++...+  ...+.+++..|.+.|..++.+.-...                        .+.   ..+.+ ....
T Consensus        23 ~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~------------------------~~~---~~l~~-~~~~   74 (209)
T d2fr1a2          23 LDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR------------------------CGR---DELAE-RLRS   74 (209)
T ss_dssp             CCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT------------------------CCH---HHHHH-HHTT
T ss_pred             CCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc------------------------cCH---HHHHH-Hhhc
Confidence            346656665443  34677788888888887766543221                        112   22222 2234


Q ss_pred             cCCccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCCCCChhhhhhHH
Q 042560          123 FGRLDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVVASAAGWLPPPRMSFYNASKA  202 (287)
Q Consensus       123 ~~~idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  202 (287)
                      .+.++.+|+-.+......        .........+...+.++|.+...  ....++.+++....... ++...-+...+
T Consensus        75 ~~~~~~vv~l~~~~~~~~--------~~~~~~~~~~~~~l~l~qal~~~--~~~~~l~~vT~~a~~~~-~~d~~~~p~~A  143 (209)
T d2fr1a2          75 VGEVAGVLSLLAVDEAEP--------EEAPLALASLADTLSLVQAMVSA--ELGCPLWTVTESAVATG-PFERVRNAAHG  143 (209)
T ss_dssp             SCCCSEEEECTTTTCCCC--------SSCGGGCHHHHHHHHHHHHHHHT--TCCCCEEEEEESCSCSS-TTSCCSCGGGH
T ss_pred             cCCCCeEEEeCCCCCCCC--------cchhHHHHHHHHHHHHHHHHHhC--CCCCcEEEEEcCCcccC-CCcccCCHhHH
Confidence            467888888765532211        11112223345555666665321  11255666654332211 22333456789


Q ss_pred             HHHHHHHHHHHHhCCC-eEEEEEe
Q 042560          203 AKIALYETLRVEFGGD-IGITIVT  225 (287)
Q Consensus       203 al~~~~~~la~e~~~~-i~v~~i~  225 (287)
                      ++-+|+|.++.|+..- ++...+-
T Consensus       144 ~l~Gl~r~~~~E~P~l~~~~vDl~  167 (209)
T d2fr1a2         144 ALWGVGRVIALENPAVWGGLVDVP  167 (209)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEEEC
T ss_pred             hHHHHHHHHHHhCCCceEEEEECC
Confidence            9999999999999765 6666663

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.92  E-value=0.36  Score=38.71  Aligned_cols=30  Identities=27%  Similarity=0.427  Sum_probs=26.4

Q ss_pred             EEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      ++|.|| |-+|.++|.+|+++|. +|.+++++
T Consensus         4 ViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           4 IVIIGA-GIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            788887 6999999999999996 69999875

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.89  E-value=2.4  Score=31.40  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcC--CCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMG--SPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      ++++++=.|+++|   .++..+++.+.+|..++-++...+.+.+..+..+  ..++.++..|..+.-.           -
T Consensus        52 ~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-----------~  117 (194)
T d1dusa_          52 KDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-----------D  117 (194)
T ss_dssp             TTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-----------T
T ss_pred             CCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-----------c
Confidence            6788999998877   3445677788899999999998887777665543  2357888888754211           1


Q ss_pred             CCccEEEEccc
Q 042560          124 GRLDHLVTNAG  134 (287)
Q Consensus       124 ~~idvli~nag  134 (287)
                      +..|+++.|..
T Consensus       118 ~~fD~Ii~~~p  128 (194)
T d1dusa_         118 RKYNKIITNPP  128 (194)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCceEEEEccc
Confidence            47899998864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=85.81  E-value=1.6  Score=33.30  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.++|=.|++.|.   ++..|++++++|+.++-++.-++.+.+.....+..++.+++.|..+.+-          ..+.
T Consensus        16 ~~~rILDiGcGtG~---~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~   82 (234)
T d1xxla_          16 AEHRVLDIGAGAGH---TALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF----------PDDS   82 (234)
T ss_dssp             TTCEEEEESCTTSH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS----------CTTC
T ss_pred             CCCEEEEeCCcCcH---HHHHHHHhCCeEEEEeCChhhhhhhhhhhcccccccccccccccccccc----------cccc
Confidence            57789999999885   4456778899999999999988887777766655578999999765321          0257


Q ss_pred             ccEEEEccccCCCCCCCCCCCCCCcccchhehhhhHHHHHHHHHHHHhcCCCEEEEE
Q 042560          126 LDHLVTNAGVVPMCLFEDYTDITKPAPAMDINFWGSAYGTYFAIPYLKQTKGKIIVV  182 (287)
Q Consensus       126 idvli~nag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~g~iv~i  182 (287)
                      .|+++.+-.....      .+              +..+++.+...+++ +|++++.
T Consensus        83 fD~v~~~~~l~~~------~d--------------~~~~l~~~~r~Lkp-gG~~~~~  118 (234)
T d1xxla_          83 FDIITCRYAAHHF------SD--------------VRKAVREVARVLKQ-DGRFLLV  118 (234)
T ss_dssp             EEEEEEESCGGGC------SC--------------HHHHHHHHHHHEEE-EEEEEEE
T ss_pred             cceeeeeceeecc------cC--------------HHHHHHHHHHeeCC-CcEEEEE
Confidence            8987765443111      11              23556677677765 5666664

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.60  E-value=1.3  Score=29.20  Aligned_cols=71  Identities=11%  Similarity=0.080  Sum_probs=45.0

Q ss_pred             CCCEEEEecCCChHH-HHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcC
Q 042560           46 AGKVVLITGASSGIG-KHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFG  124 (287)
Q Consensus        46 ~~k~alVtGa~~giG-~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~  124 (287)
                      +.|.+.+.|- +|+| .++|+.|.++|++|...|++....-+   .+...+   +.+...+-  ++.+           .
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~---~L~~~G---i~v~~g~~--~~~i-----------~   66 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQ---RLAQAG---AKIYIGHA--EEHI-----------E   66 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHH---HHHHTT---CEEEESCC--GGGG-----------T
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhh---HHHHCC---CeEEECCc--cccC-----------C
Confidence            5677888877 4555 45699999999999999997654332   223333   33322221  2211           3


Q ss_pred             CccEEEEccccC
Q 042560          125 RLDHLVTNAGVV  136 (287)
Q Consensus       125 ~idvli~nag~~  136 (287)
                      ..|.+|.+.++.
T Consensus        67 ~~d~vV~S~AI~   78 (96)
T d1p3da1          67 GASVVVVSSAIK   78 (96)
T ss_dssp             TCSEEEECTTSC
T ss_pred             CCCEEEECCCcC
Confidence            579999998874

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.98  E-value=2  Score=33.45  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=32.5

Q ss_pred             cCCCCCCCCEEEEecCCChHHHHHHHHHHH-cCCeEEEEeCC
Q 042560           40 INAEDVAGKVVLITGASSGIGKHLAYEYAR-RRARLVLVARR   80 (287)
Q Consensus        40 ~~~~~~~~k~alVtGa~~giG~aia~~L~~-~G~~vv~~~r~   80 (287)
                      ....+++||+++|-|- |..|..+|+.|++ .|++|+.++..
T Consensus        25 ~g~~~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          25 LGWDTLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             TTCSCSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hCCCCcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            3445689999999998 6699999999986 58998877653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.66  E-value=0.72  Score=37.22  Aligned_cols=38  Identities=21%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             CCCCCCCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeC
Q 042560           41 NAEDVAGKVVLITGASSGIGKHLAYEYARRRARLVLVAR   79 (287)
Q Consensus        41 ~~~~~~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r   79 (287)
                      ...+++|++++|-|- |-.|..+|+.|.+.|++|+.++.
T Consensus        30 l~~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          30 MTPGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             CCSSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence            345789999999998 79999999999999999998764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.42  E-value=1.9  Score=30.01  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             CCCEEEEecCCC----------hHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHH
Q 042560           46 AGKVVLITGASS----------GIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHF  115 (287)
Q Consensus        46 ~~k~alVtGa~~----------giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~  115 (287)
                      .-|+++|.|++.          --+.+.++.|.+.|++++++..|++....-.+.     .+++.   ...-+.+++.++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~-----aD~lY---fePlt~e~v~~I   77 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEM-----ADATY---IEPIHWEVVRKI   77 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGG-----SSEEE---CSCCCHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhh-----cceee---eecCCHHHHHHH
Confidence            458899999974          346778889999999999999998875422111     12333   344557777777


Q ss_pred             HHHHHHhcCCccEEEEcccc
Q 042560          116 VDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       116 ~~~~~~~~~~idvli~nag~  135 (287)
                      ++.     .++|.++-..|.
T Consensus        78 i~~-----E~pd~il~~~GG   92 (127)
T d1a9xa3          78 IEK-----ERPDAVLPTMGG   92 (127)
T ss_dssp             HHH-----HCCSEEECSSSH
T ss_pred             HHH-----hCcCCeEEEeee
Confidence            654     378888777664

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.93  E-value=0.42  Score=42.17  Aligned_cols=36  Identities=8%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             CCCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCC
Q 042560           44 DVAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARR   80 (287)
Q Consensus        44 ~~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~   80 (287)
                      .+++..++|.|+ ||+|..+++.|+..|. ++.++|..
T Consensus        22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            456778999997 7999999999999997 77787653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=2.9  Score=30.81  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhc
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHF  123 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  123 (287)
                      +.+++++=.+|++|   +++.+.+++|+ +|+.++.+....+-+.+.++..+..+...+..|+.         +.+....
T Consensus        42 ~~~~~vLDlfaGsG---~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~---------~~l~~~~  109 (183)
T d2fpoa1          42 IVDAQCLDCFAGSG---ALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM---------SFLAQKG  109 (183)
T ss_dssp             HTTCEEEETTCTTC---HHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH---------HHHSSCC
T ss_pred             cchhhhhhhhcccc---ceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc---------ccccccc
Confidence            46666665555543   24445667888 79999999999888887777655556777777632         1222233


Q ss_pred             CCccEEEEcccc
Q 042560          124 GRLDHLVTNAGV  135 (287)
Q Consensus       124 ~~idvli~nag~  135 (287)
                      .+.|+++.+..+
T Consensus       110 ~~fDlIf~DPPY  121 (183)
T d2fpoa1         110 TPHNIVFVDPPF  121 (183)
T ss_dssp             CCEEEEEECCSS
T ss_pred             cccCEEEEcCcc
Confidence            578999988643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.43  Score=37.84  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             CCCCEEEEecCCChHHHHH-----HHHHHHcCCeEEEEeCChh
Q 042560           45 VAGKVVLITGASSGIGKHL-----AYEYARRRARLVLVARRER   82 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~ai-----a~~L~~~G~~vv~~~r~~~   82 (287)
                      =.++.++|+.|-||.|+..     |..|+++|.+|.+++-++.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3577778887799999986     7899999999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.7  Score=36.74  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      +.++|+|.|| |-=|+.+|.+|+++|++|.++..+
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3456888888 677899999999999999998654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.15  E-value=3.3  Score=31.70  Aligned_cols=75  Identities=21%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCC
Q 042560           46 AGKVVLITGASSGIGKHLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGR  125 (287)
Q Consensus        46 ~~k~alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~  125 (287)
                      +|.++|-.|+++|.-.++   |++.+.+|+.++++++..+...+.....  .++.++..|..+-          ....++
T Consensus        70 ~g~~VLdIG~GsGy~ta~---La~l~~~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g----------~~~~~p  134 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTAL---IAEIVDKVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLG----------YEEEKP  134 (224)
T ss_dssp             TTCEEEEECCTTSHHHHH---HHHHSSEEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGC----------CGGGCC
T ss_pred             ccceEEEecCCCCHHHHH---HHHHhcccccccccHHHHHHHHHHHhcc--cccccccCchhhc----------chhhhh
Confidence            577899999999865544   5566789999999988877665544432  4688888886431          011257


Q ss_pred             ccEEEEcccc
Q 042560          126 LDHLVTNAGV  135 (287)
Q Consensus       126 idvli~nag~  135 (287)
                      .|.++.+++.
T Consensus       135 fD~Iiv~~a~  144 (224)
T d1vbfa_         135 YDRVVVWATA  144 (224)
T ss_dssp             EEEEEESSBB
T ss_pred             HHHHHhhcch
Confidence            8999887764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.11  E-value=2.8  Score=33.92  Aligned_cols=75  Identities=23%  Similarity=0.295  Sum_probs=51.3

Q ss_pred             CCCCEEEEecCCChHHHHHHHHHHHcCC-eEEEEeCChhHHHHHHHHHHhcC-CCeeEEEeecCCCHHHHHHHHHHHHHh
Q 042560           45 VAGKVVLITGASSGIGKHLAYEYARRRA-RLVLVARRERQLREVADQAELMG-SPFALAIPADVSKVEDCKHFVDVTMEH  122 (287)
Q Consensus        45 ~~~k~alVtGa~~giG~aia~~L~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~  122 (287)
                      .+|+++|-.|++.|+   ++..+++.|+ +|+.++.++ ..+.+.+..+..+ ..++.++..|+.+.+-          .
T Consensus        37 ~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~----------~  102 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL----------P  102 (328)
T ss_dssp             HTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC----------S
T ss_pred             CCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC----------c
Confidence            479999999999884   4566778897 688888775 3444444444433 4468889888876421          1


Q ss_pred             cCCccEEEEcc
Q 042560          123 FGRLDHLVTNA  133 (287)
Q Consensus       123 ~~~idvli~na  133 (287)
                      ..+.|+++...
T Consensus       103 ~~~~D~i~se~  113 (328)
T d1g6q1_         103 FPKVDIIISEW  113 (328)
T ss_dssp             SSCEEEEEECC
T ss_pred             ccceeEEEEEe
Confidence            14689888765

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.80  E-value=0.29  Score=36.04  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             EEEEecCCChHHHHHHHHHHHc-CCeEEE-EeCChhHH-----HHH-------------HHHHHhcCCCeeEEEeecCCC
Q 042560           49 VVLITGASSGIGKHLAYEYARR-RARLVL-VARRERQL-----REV-------------ADQAELMGSPFALAIPADVSK  108 (287)
Q Consensus        49 ~alVtGa~~giG~aia~~L~~~-G~~vv~-~~r~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~D~~~  108 (287)
                      ++.|.|++|-+|+++++...+. +++++. ++|.....     .+.             .++..    ..+. +..|++.
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~----~~~D-ViIDFs~   80 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVK----DDFD-VFIDFTR   80 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTT----TSCS-EEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHh----cccc-eEEEecc
Confidence            5899999999999999999876 556543 34432110     000             00000    0122 4589999


Q ss_pred             HHHHHHHHHHHHHhcCCccEEEEcccc
Q 042560          109 VEDCKHFVDVTMEHFGRLDHLVTNAGV  135 (287)
Q Consensus       109 ~~~v~~~~~~~~~~~~~idvli~nag~  135 (287)
                      ++...+.++...+.  ++.+++-..|.
T Consensus        81 p~~~~~~~~~a~~~--~~~~ViGTTG~  105 (162)
T d1diha1          81 PEGTLNHLAFCRQH--GKGMVIGTTGF  105 (162)
T ss_dssp             HHHHHHHHHHHHHT--TCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhc--cceeEEecCCC
Confidence            99999999877765  67888888886

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.14  E-value=2.1  Score=30.68  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=32.7

Q ss_pred             CCEEEEecCCChHHHHHHHHHHHc--CCeEEEEe--CChhHHHHHHHHH
Q 042560           47 GKVVLITGASSGIGKHLAYEYARR--RARLVLVA--RRERQLREVADQA   91 (287)
Q Consensus        47 ~k~alVtGa~~giG~aia~~L~~~--G~~vv~~~--r~~~~~~~~~~~~   91 (287)
                      .|.+.|.|+||.||.....-+.+.  .++|+.++  +|.+.+.+...++
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef   50 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRT   50 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhh
Confidence            378999999999999999988775  56777654  4455555444443

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=81.55  E-value=0.83  Score=36.82  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             CEEEEecCCC-hH---HHHHHHHHHHcCCeEEEEeCC
Q 042560           48 KVVLITGASS-GI---GKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        48 k~alVtGa~~-gi---G~aia~~L~~~G~~vv~~~r~   80 (287)
                      |+++|++|++ |-   ..+++++|.++|++|..++..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            4566666543 44   457999999999999877643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=80.90  E-value=0.73  Score=35.50  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=27.6

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCChh
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARRER   82 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~~~   82 (287)
                      ++|.|| |--|..+|..|+++|.+|+++.++..
T Consensus         5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            678888 57889999999999999999988643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.59  E-value=0.73  Score=35.17  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             CCCEEEEecCCChHHHH-----HHHHHHHcCCeEEEEeCC
Q 042560           46 AGKVVLITGASSGIGKH-----LAYEYARRRARLVLVARR   80 (287)
Q Consensus        46 ~~k~alVtGa~~giG~a-----ia~~L~~~G~~vv~~~r~   80 (287)
                      .+|++.|+|+-||.|+.     +|..|+++|.+|.+++-+
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            37899999999999875     567888999999999854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.47  E-value=0.79  Score=36.67  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=27.1

Q ss_pred             EEEecCCChHHHHHHHHHHHcCCeEEEEeCC
Q 042560           50 VLITGASSGIGKHLAYEYARRRARLVLVARR   80 (287)
Q Consensus        50 alVtGa~~giG~aia~~L~~~G~~vv~~~r~   80 (287)
                      ++|.|+ |..|..+|..|+++|.+|+++.+.
T Consensus        19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          19 VVVVGS-GGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            788887 789999999999999999999864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.15  E-value=2.7  Score=27.11  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=43.1

Q ss_pred             EEEEecCCChHHH-HHHHHHHHcCCeEEEEeCChhHHHHHHHHHHhcCCCeeEEEeecCCCHHHHHHHHHHHHHhcCCcc
Q 042560           49 VVLITGASSGIGK-HLAYEYARRRARLVLVARRERQLREVADQAELMGSPFALAIPADVSKVEDCKHFVDVTMEHFGRLD  127 (287)
Q Consensus        49 ~alVtGa~~giG~-aia~~L~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id  127 (287)
                      ++-+.|- +|+|. ++|+.|.++|+.|...|++....-   +.++..+   +.+...  -+.+.+           ...|
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~G---i~i~~g--h~~~~i-----------~~~d   62 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKLG---IPIFVP--HSADNW-----------YDPD   62 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHTT---CCEESS--CCTTSC-----------CCCS
T ss_pred             EEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHCC---CeEEee--eccccc-----------CCCC
Confidence            3445554 67777 789999999999999999865432   2355444   222221  111111           3679


Q ss_pred             EEEEccccC
Q 042560          128 HLVTNAGVV  136 (287)
Q Consensus       128 vli~nag~~  136 (287)
                      .+|...++.
T Consensus        63 ~vV~SsAI~   71 (89)
T d1j6ua1          63 LVIKTPAVR   71 (89)
T ss_dssp             EEEECTTCC
T ss_pred             EEEEecCcC
Confidence            999999874