Citrus Sinensis ID: 042576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDGGEWNSSYVKKKLMFRPSAAISASHEM
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccEEEEEccccccHHHHHHcccccEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHcccccccEEEEEcccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEEEEcHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHcccEEEEccccccccccEEccccccccccccccEEEEEEcccccHHHHHHccccccEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHccccccEEEEEcccccEcccccccccccccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
clvpvdftripcLYVFVEIKIDVNRLIDTIkvnysdpgkliLAGTIQFASAIRAAkpelekqgfkvmipqskplsagevlgctapkiparesdfnlvFIADGRFHLEAFmisnpgiktfrydpylgklfLEEYDNKGMRETRKRAIEKAMKEARTWGIVLgtlgrqgnPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACprlsidwgdaftkplltpfEAEIAlgvipgwwerdkererereeskscggcgnedkncdgdgdypmdyyaqdggewnssYVKKKlmfrpsaaisashem
Flexible Loop (DISEMBL)
clvpvdftripCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIpqskplsageVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFleeydnkgmRETRKRAIEKAMKEartwgivlgtlgrqgnprILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEialgvipgwwerDKERErereeskscggcgnedkncdgDGDYPMDYYAQDGGEWNSSYVKKKLMFrpsaaisashem
Low Complexity Region (SEG)
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWerdkererereeSKSCGGCGNEDKNCDGDGDYPMDYYAQDGGEWNSSYVKKKLMFRPSAAISASHEM
Disordered region (IsUnstruct)
*LVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIP****LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNK*********IEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWE******************************YPMDYYAQDGGEWNSSYVKK****************
Disordered Region (DISOPRED)
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWERDKERERERE******************GDYPMDYYAQDGGE************************
Disordered Region (DISEMBL)
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWER****************CGNEDKNCDGDGDYPMDYYAQDGGEWNSSYVKKKLMFRPS*********
Disordered Region (DISPRO)
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWERDK*************************GDYPMDYYAQDGGEWNS*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDGGEWNSSYVKKKLMFRPSAAISASHEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q5AZJ7	431	Diphthamide biosynthesis	yes	no	0.824	0.598	0.475	1e-71
Q54PW5	472	Diphthamide biosynthesis	yes	no	0.830	0.550	0.436	1e-70
Q4IQ72	462	Diphthamide biosynthesis	yes	no	0.821	0.556	0.442	3e-70
Q4X0S7	445	Diphthamide biosynthesis	yes	no	0.824	0.579	0.468	4e-70
Q5ZHX9	409	Diphthamide biosynthesis	yes	no	0.872	0.667	0.458	2e-69
O59713	436	Diphthamide biosynthesis	yes	no	0.821	0.589	0.457	3e-68
Q6GPQ5	439	Diphthamide biosynthesis	N/A	no	0.827	0.589	0.439	7e-67
Q3SYT1	438	Diphthamide biosynthesis	yes	no	0.856	0.611	0.431	1e-66
Q3T7C9	423	Diphthamide biosynthesis	N/A	no	0.830	0.614	0.439	2e-66
A7SLX5	465	Diphthamide biosynthesis	N/A	no	0.814	0.548	0.440	2e-66

>sp|Q5AZJ7|DPH1_EMENI Diphthamide biosynthesis protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph1 PE=3 SV=2

 Score =  270 bits (690), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/288 (47%), Positives = 185/288 (64%), Gaps = 30/288 (10%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLI-LAGTIQFASAIRAAKPEL 59
           CL+PVD T+I  LY+FV+I ID + LI T++ N+  PGK I   GTIQF + +   KP L
Sbjct: 161 CLIPVDVTKIKTLYIFVDISIDTSHLIATLERNF-QPGKTIATVGTIQFNATLHGLKPVL 219

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
           E+ GF V+IPQ  PLS GE+LGCT+P + A++ D+ L+++ DGRFHLE+ MI NP I  +
Sbjct: 220 ERAGFNVVIPQITPLSKGEILGCTSPSLSAQQIDY-LLYLGDGRFHLESAMIHNPSIPAY 278

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
           RYDPY   L  E YD+  M   R+ AI  A + A+ WGI+LG+LGRQGNP  +  ++  +
Sbjct: 279 RYDPYSRTLSRESYDHTEMHTLRRDAIAAA-RTAKKWGIILGSLGRQGNPHTMAMIESHL 337

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
            ++G  +V +++SEI P ++A   D V+ W+QIACPRLSIDWG AF +PLLTP+EA IAL
Sbjct: 338 NERGIPFVNLLLSEIFPGKLAAMSD-VECWVQIACPRLSIDWGYAFPRPLLTPYEALIAL 396

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG 287
           GV   W     E+  E                    G YPMD+YA+DG
Sbjct: 397 GVRDDW-----EKTHE--------------------GVYPMDFYAKDG 419

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q54PW5|DPH1_DICDI Diphthamide biosynthesis protein 1 OS=Dictyostelium discoideum GN=dph1 PE=3 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/298 (43%), Positives = 192/298 (64%), Gaps = 38/298 (12%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CL+P+D + I  LYVFV+I+ D+   I+T+K N+    KLI+  TIQF++++++++  L 
Sbjct: 204 CLIPIDVSEIKMLYVFVDIQFDLQHFIETLKFNFKQTQKLIMVSTIQFSASLQSSREPLS 263

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFN------LVFIADGRFHLEAFMISNP 114
           +    + IPQ KPLS GE+LGCT+PKI     D +      ++++ DGRFHLE+ MISNP
Sbjct: 264 EYFSNIFIPQEKPLSPGEILGCTSPKIKFTSPDGDEENNEIVIYLGDGRFHLESIMISNP 323

Query: 115 GIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174
            +K++RYDPY     LE+YD + M + R+ AIE A K A  +GI+LGTLGRQG+P+IL+ 
Sbjct: 324 HVKSYRYDPYSKVFSLEKYDFQEMYKIRRDAIETASK-ATKFGIILGTLGRQGSPKILDH 382

Query: 175 LQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFE 234
           L++ ++  G  Y  +++SEI PA++ +F D +++WIQIACPRLSIDWG AFT PLL P+E
Sbjct: 383 LEQLLKSNGKHYTTVLLSEIFPAKLDMFSD-IESWIQIACPRLSIDWGYAFTTPLLNPYE 441

Query: 235 AEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDGGEWNS 292
           AE+ LG I   W+                              YPMD+Y+++GG+W +
Sbjct: 442 AEVCLGGIN--WQ----------------------------SVYPMDFYSKEGGKWTN 469

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4IQ72|DPH1_GIBZE Diphthamide biosynthesis protein 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DPH1 PE=3 SV=1

 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/287 (44%), Positives = 179/287 (62%), Gaps = 30/287 (10%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CL+PVD T I  LYVFV+I ID   L+ +++ N++    + + GTIQF + I   K  LE
Sbjct: 195 CLIPVDVTTIKTLYVFVDISIDATHLLASLEHNFASGKTIAVVGTIQFNATIHGVKSSLE 254

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFR 120
           + GF+V++PQ  PLS GE+LGCT+P++   +    ++++ DGRFHLE+ MI NP I  +R
Sbjct: 255 RGGFRVLVPQIAPLSKGEILGCTSPRLTEDDKIDLILYLGDGRFHLESIMIHNPTIPAYR 314

Query: 121 YDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRME 180
           YDPY  KL  E Y ++ M+  R+ AI  A + AR WG++LG LGRQGNP  L  ++K ++
Sbjct: 315 YDPYSRKLTRETYGHEEMQSLRRTAIHSA-RSARKWGLILGALGRQGNPHTLGLIEKELK 373

Query: 181 KKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALG 240
            +G   V +++SEI P ++AL  D ++ W+Q+ACPRLSIDWG AF++PLLTP+EA +ALG
Sbjct: 374 ARGIPIVHLLLSEIFPGKLALMSD-IECWVQVACPRLSIDWGYAFSRPLLTPYEALVALG 432

Query: 241 VIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG 287
               W                            GDG YPMDYY +DG
Sbjct: 433 EKKDW----------------------------GDGVYPMDYYGKDG 451

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q4X0S7|DPH1_ASPFU Diphthamide biosynthesis protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dph1 PE=3 SV=1

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/288 (46%), Positives = 181/288 (62%), Gaps = 30/288 (10%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLI-LAGTIQFASAIRAAKPEL 59
           CL+PVD T+I  LY+FV+I ID + LI T++ N+  PGK I   GTIQF + +   KP L
Sbjct: 173 CLIPVDVTQIKTLYIFVDISIDTSHLIATLERNF-QPGKTIATVGTIQFNATLHGLKPVL 231

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
           E+ GFKV+IPQ  PLS GE+LGCT+P++   E D  L+++ DGRFHLE+ MI NP I  +
Sbjct: 232 ERAGFKVVIPQIAPLSKGEILGCTSPQLSPTEIDI-LLYLGDGRFHLESAMIHNPTIPAY 290

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
           RYDPY   L  E Y +  M   R+ AI  A K A+ WGI+LG+LGRQGNP  +  ++  +
Sbjct: 291 RYDPYSRTLSRETYSHDEMHALRRDAINTA-KSAKKWGIILGSLGRQGNPNTMAMIENHL 349

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
            ++G  +V +++SEI P ++A   D V+ W+QIACPRLSIDWG AF +PLLTP+EA IAL
Sbjct: 350 NERGIPFVNLLLSEIFPGKLASMSD-VECWVQIACPRLSIDWGYAFPRPLLTPYEALIAL 408

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG 287
           GV   W                         +    G YPMD+YA++G
Sbjct: 409 GVREHW-------------------------DSANSGVYPMDFYAKEG 431

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5ZHX9|DPH1_CHICK Diphthamide biosynthesis protein 1 OS=Gallus gallus GN=DPH1 PE=2 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/310 (45%), Positives = 202/310 (65%), Gaps = 37/310 (11%)

Query: 1   CLVPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPEL 59
           CL+P+D TR +  LYVFV+IKID +  +DTI+ N++    L L  TIQF +A++AA  EL
Sbjct: 130 CLIPIDATRGLKMLYVFVDIKIDTSHFLDTIRFNFAVGSSLALVSTIQFVAAVQAASQEL 189

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
           + Q +KV +PQ KPLS GE+LGCT+P++ AR++D  +V++ DGRFHLE+ MI+NPGI  +
Sbjct: 190 QSQ-YKVCVPQCKPLSPGEILGCTSPRL-ARDTD-AIVYLGDGRFHLESIMIANPGIPAY 246

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
           RYDPY  K+F +E+         ++A  ++   AR WG++LGTLGRQG+P IL+ L+ R+
Sbjct: 247 RYDPY-SKVFSQEHYAHDRMHGARQAAIRSAARARCWGLLLGTLGRQGSPAILQHLESRL 305

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
              G  +V +++SEI P+++ LF DSVDAW+QIACPRLSIDWG+AF+KPLLTP+EA +AL
Sbjct: 306 RALGRPFVRVLLSEIFPSKLQLF-DSVDAWVQIACPRLSIDWGEAFSKPLLTPYEAAVAL 364

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYA-QDGGEWNSSYVKKK 298
           G I   W++                             YPMD+YA Q  G W +++  + 
Sbjct: 365 GDIE--WQQ----------------------------PYPMDFYASQSLGPWTANHTARP 394

Query: 299 LMFRPSAAIS 308
              +P A  S
Sbjct: 395 AQEKPPATPS 404

May be required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Gallus gallus (taxid: 9031)

>sp|O59713|DPH1_SCHPO Diphthamide biosynthesis protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph1 PE=3 SV=1

 Score =  258 bits (660), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 136/297 (45%), Positives = 183/297 (61%), Gaps = 40/297 (13%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CL+PVD T I  LYVFV+IKID+  ++ ++K N     +L L GTIQF  ++ + K  L+
Sbjct: 152 CLIPVDQTPIKVLYVFVDIKIDLQHVVSSLKHNLPSNSRLALVGTIQFVGSLNSIKDALQ 211

Query: 61  KQ------GFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNP 114
            Q      GF V+IPQ+KPLS GE LGCT+P I     D  L++I DGRFHLE+ MI+NP
Sbjct: 212 IQDEDGKGGFYVVIPQAKPLSPGEALGCTSPYIEKGSVD-ALIYIGDGRFHLESVMIANP 270

Query: 115 GIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174
            +  +RYDPY  KL +E Y ++ M+  R  A+EKA + A+ +G++ GTLGRQG+P++LE 
Sbjct: 271 DLPAYRYDPYSHKLSIESYAHEEMKSIRYSAVEKA-RTAKKFGLIQGTLGRQGSPKVLEN 329

Query: 175 LQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFE 234
           L+  + K   D+V ++MSEI P+R+  F D +DAWIQ+ACPRLSIDWG AF  PLLTP+E
Sbjct: 330 LKNTLRKNNKDFVCVLMSEIFPSRLGQFSD-IDAWIQVACPRLSIDWGYAFPAPLLTPYE 388

Query: 235 AEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEW 290
           A  A  V+P W E                              YPMD+YA +  G W
Sbjct: 389 ASAAFNVVP-WKEV-----------------------------YPMDFYATNSLGNW 415

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6GPQ5|DPH1_XENLA Diphthamide biosynthesis protein 1 OS=Xenopus laevis GN=dph1 PE=2 SV=2

 Score =  254 bits (648), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 182/296 (61%), Gaps = 37/296 (12%)

Query: 1   CLVPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPEL 59
           CL+P+D T  +  LYVFV+IKID +  +DTI+ N+     L L  T+QF SA++AA+  L
Sbjct: 135 CLIPIDATHGVRMLYVFVDIKIDTSHFVDTIRFNFQAGASLALVSTVQFVSALQAARQAL 194

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
           +   + V +PQ KPLS GE+LGCT+P++   +S   +V++ DGRFHLE+ MISNP  K +
Sbjct: 195 QTD-YNVTVPQCKPLSPGEILGCTSPRL--NKSVDAVVYLGDGRFHLESVMISNPDTKAY 251

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
           RYDPY      E YD+  M   R  AI  A   A+TWG++LGTLGRQG+P+I+E L+ R+
Sbjct: 252 RYDPYSKVFSREYYDHSTMLRHRGEAISVATN-AKTWGLILGTLGRQGSPKIMEHLESRL 310

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
           +  G  YV +++SEI P ++ LF + V+ W+Q+ACPRLSIDWG AF+KPLLTP+EA +AL
Sbjct: 311 QALGCRYVRLLLSEIFPNKLKLFAE-VEVWVQVACPRLSIDWGTAFSKPLLTPYEASVAL 369

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEWNSSY 294
                                         K  +    YPMD+YA +  G W  ++
Sbjct: 370 ------------------------------KEAEWQLTYPMDFYANESLGPWTVNH 395

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Xenopus laevis (taxid: 8355)

>sp|Q3SYT1|DPH1_BOVIN Diphthamide biosynthesis protein 1 OS=Bos taurus GN=DPH1 PE=2 SV=1

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/306 (43%), Positives = 194/306 (63%), Gaps = 38/306 (12%)

Query: 1   CLVPVDFTR--IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPE 58
           CLVP+D +      LYVFV+I+ID   L+D+I++ +     L L  TIQF S ++AA  E
Sbjct: 132 CLVPMDTSAQDFRVLYVFVDIRIDTAHLLDSIRLTFPPASALALVSTIQFVSTLQAAAQE 191

Query: 59  LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
           L+ + ++V +PQ KPLS GE+LGCT+P +P +E +  +V++ DGRFHLE+ MI+NP I  
Sbjct: 192 LKAE-YRVSVPQCKPLSPGEILGCTSPCLP-KEVE-AVVYLGDGRFHLESVMIANPNISA 248

Query: 119 FRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
           +RYDPY   L  E YD++ M+  R+ AI  A + A++WG++LGTLGRQG+P+ILE L+ R
Sbjct: 249 YRYDPYSKVLSREHYDHQRMQANRQEAIATA-RSAKSWGLILGTLGRQGSPKILEHLESR 307

Query: 179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
           ++  G  +V +++SEI P++++L  + VD W+Q+ACPRLSIDWG AF KPLLTP+EA +A
Sbjct: 308 LQALGLPFVRLLLSEIFPSKLSLLPE-VDVWVQVACPRLSIDWGTAFPKPLLTPYEAAVA 366

Query: 239 LGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEWNSSYVKK 297
           L  I   W++                             YPMD+YA    G W  ++ + 
Sbjct: 367 LRDIS--WQQ----------------------------PYPMDFYASSSLGPWTVNHGRD 396

Query: 298 KLMFRP 303
           +L+  P
Sbjct: 397 RLLQVP 402

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Bos taurus (taxid: 9913)

>sp|Q3T7C9|DPH1_LITVA Diphthamide biosynthesis protein 1 OS=Litopenaeus vannamei PE=1 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/296 (43%), Positives = 183/296 (61%), Gaps = 36/296 (12%)

Query: 1   CLVPVDFT-RIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T  IPCLYVFV+I+ D   LIDTIK  +     L L   IQF S+++    +L
Sbjct: 133 CLVPIDQTGSIPCLYVFVDIQFDTVHLIDTIKSVFPSTVPLALVSIIQFVSSLQKMAQDL 192

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
           +  G+ V +PQ +PLS GEVLGCT+P +P   +   +V + DGRFHLE+ MISNP + T+
Sbjct: 193 KSCGYTVCVPQCRPLSPGEVLGCTSPPVPEGHT---IVCLGDGRFHLESIMISNPEVPTY 249

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
            Y+PY   L  E YD   M++ RK  I+KA   A+ WG++LGTLGRQGN +++E L+ ++
Sbjct: 250 LYNPYSKVLSREYYDQPLMKKIRKEIIDKA-STAKKWGLILGTLGRQGNTKVMENLKNQL 308

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
           E  G D+V++++SEI PA++    D V+AW+Q+ACPRLSIDWG +F +PLL P+EA +AL
Sbjct: 309 EAAGKDFVIVLLSEIFPAKLEAMSD-VEAWVQVACPRLSIDWGASFPRPLLNPYEATVAL 367

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEWNSSY 294
                   +  E   +R                     YPMD+YA +  GEW  ++
Sbjct: 368 --------KHAEWHAQR---------------------YPMDFYANESLGEWTPNH 394

May be required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2 (By similarity). Seems to induce apoptosis.

Litopenaeus vannamei (taxid: 6689)

>sp|A7SLX5|DPH1_NEMVE Diphthamide biosynthesis protein 1 OS=Nematostella vectensis GN=dph1 PE=3 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/293 (44%), Positives = 185/293 (63%), Gaps = 38/293 (12%)

Query: 1   CLVPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T  I  LYVFV+IKID    +++++ N      L L  TIQF +A++AA  EL
Sbjct: 149 CLVPIDATAGIKMLYVFVDIKIDTAHFVESVRFNLGAGSCLALVSTIQFVAALQAASNEL 208

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
            K  ++V IPQ KPLS GE+LGCTAP +  +++   ++++ DGRFHLEA MI+NP I+ +
Sbjct: 209 SKD-YQVEIPQCKPLSPGEILGCTAPMLKDKDA---VIYLGDGRFHLEAVMIANPAIQAY 264

Query: 120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
           RYDPY      E YD   M E R+ AI++A   A  +G++LGTLGRQG+P++L+ L+K++
Sbjct: 265 RYDPYDKTFSKEYYDIDKMHEARQTAIKQA-SLASKYGLILGTLGRQGSPKVLQTLEKQL 323

Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
           +    DY+++++SE+ P ++ LF+D VDAW+Q+ACPRLSIDWG AF KPLL+P+EA +AL
Sbjct: 324 QSLNMDYIIVLLSEVFPDKLKLFKD-VDAWVQVACPRLSIDWGTAFPKPLLSPYEASVAL 382

Query: 240 GVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEWN 291
             +   W++                             YPMD+YA    G W 
Sbjct: 383 QSVA--WQQ----------------------------SYPMDFYAYSSLGGWT 405

Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.

Nematostella vectensis (taxid: 45351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
357481175	575	Diphthamide biosynthesis protein [Medica	0.980	0.533	0.670	1e-123
449438157	462	PREDICTED: diphthamide biosynthesis prot	0.952	0.645	0.688	1e-123
255576225	434	Diphthamide biosynthesis protein, putati	0.904	0.652	0.707	1e-121
15240408	453	diphthamide synthesis DPH2 family protei	0.945	0.653	0.706	1e-121
10176920	468	unnamed protein product [Arabidopsis tha	0.945	0.632	0.706	1e-121
356529829	467	PREDICTED: diphthamide biosynthesis prot	0.952	0.638	0.680	1e-120
356544449	459	PREDICTED: diphthamide biosynthesis prot	0.948	0.647	0.672	1e-118
224144867	428	predicted protein [Populus trichocarpa]	0.881	0.644	0.694	1e-118
225466198	461	PREDICTED: diphthamide biosynthesis prot	0.961	0.652	0.676	1e-117
297793763	453	diphthamide synthesis DPH2 family protei	0.945	0.653	0.702	1e-113

>gi|357481175|ref|XP_003610873.1| Diphthamide biosynthesis protein [Medicago truncatula] gi|355512208|gb|AES93831.1| Diphthamide biosynthesis protein [Medicago truncatula]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 260/325 (80%), Gaps = 18/325 (5%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPG----KLILAGTIQFASAIRAAK 56
           CLVP+D T+IPCLYVFV+IKIDV+ L+DT+K+N  D G    ++ILAGTIQFAS IRA K
Sbjct: 133 CLVPIDSTKIPCLYVFVDIKIDVDHLVDTVKLNSKDLGFMGKRVILAGTIQFASGIRAVK 192

Query: 57  PELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFN---LVFIADGRFHLEAFMISN 113
           PELEK GF+V++PQSKPLSAGE+LGCTAPK+     D     LVF++DGRFHLEAFMI+N
Sbjct: 193 PELEKLGFRVLVPQSKPLSAGEILGCTAPKVGKELDDKEESVLVFVSDGRFHLEAFMIAN 252

Query: 114 PGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILE 173
           PG+K FRYDPY+GKLFLEEYD+ GM+ +RK AI KA KEAR WG+VLGTLGRQGNP+ILE
Sbjct: 253 PGVKAFRYDPYVGKLFLEEYDHVGMKGSRKNAILKA-KEARNWGVVLGTLGRQGNPKILE 311

Query: 174 RLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPF 233
           RL+ +M  KGFDY V++MSE+SP R++LFEDSVDAWIQIACPRLSIDWGDAF KP+LTPF
Sbjct: 312 RLEMKMGDKGFDYTVVLMSELSPYRISLFEDSVDAWIQIACPRLSIDWGDAFVKPVLTPF 371

Query: 234 EAEIALGVIPGWWERDKEREREREESKSC--------GGCGNEDKNCDGDGDYPMDYYAQ 285
           EAEIALG+IPGWWE+ + +++  E+   C        G CGN     D  GDYPMDYYAQ
Sbjct: 372 EAEIALGLIPGWWEKTQVQKQGCEDVTGCNKSDCCSNGSCGNAKATEDFGGDYPMDYYAQ 431

Query: 286 DGGEWNSSYVKKKLMFRPSAAISAS 310
           DGGEWNSSY+KK    RP+  IS +
Sbjct: 432 DGGEWNSSYMKKP--SRPARKISVT 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438157|ref|XP_004136856.1| PREDICTED: diphthamide biosynthesis protein 1-like [Cucumis sativus] gi|449478949|ref|XP_004155462.1| PREDICTED: diphthamide biosynthesis protein 1-like [Cucumis sativus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/305 (68%), Positives = 250/305 (81%), Gaps = 7/305 (2%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYS--DPGKLILAGTIQFASAIRAAKPE 58
           CLVP+D T IPCLYVFV+I IDV RL++T+++N    D   L+LAGTIQFASAIRA+K E
Sbjct: 140 CLVPIDSTTIPCLYVFVDIAIDVPRLVNTVRLNVDCLDSTNLVLAGTIQFASAIRASKME 199

Query: 59  LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFN----LVFIADGRFHLEAFMISNP 114
           LE+ G +V+IPQS+PLSAGEVLGCTAPK+       N     +F+ADGRFHLEAFMI+NP
Sbjct: 200 LERHGIRVLIPQSRPLSAGEVLGCTAPKVSTAAFGNNGETVAIFVADGRFHLEAFMIANP 259

Query: 115 GIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174
           GI+ FRYDPY+GKL LEEYD++GM+ +RK AI KA KEA  WGIVLGTLGRQGNP+ILER
Sbjct: 260 GIRVFRYDPYIGKLLLEEYDHEGMKASRKGAILKA-KEATNWGIVLGTLGRQGNPKILER 318

Query: 175 LQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFE 234
           L+++M+ KGFDY V++MSEISP RVALFEDSVDAWIQIACPRLSIDWGDAF KPLLTPFE
Sbjct: 319 LEEKMKSKGFDYTVVLMSEISPYRVALFEDSVDAWIQIACPRLSIDWGDAFAKPLLTPFE 378

Query: 235 AEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDGGEWNSSY 294
           AE+ALG+IPGWWER    +    + + CG  G+E    + +G+YPMDYYAQDGGEWNSSY
Sbjct: 379 AEVALGLIPGWWERTSSAKLSCNDCRECGCNGDEINKAEAEGEYPMDYYAQDGGEWNSSY 438

Query: 295 VKKKL 299
           VKKK+
Sbjct: 439 VKKKV 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576225|ref|XP_002529006.1| Diphthamide biosynthesis protein, putative [Ricinus communis] gi|223531546|gb|EEF33376.1| Diphthamide biosynthesis protein, putative [Ricinus communis]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 245/304 (80%), Gaps = 21/304 (6%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CLVP+D T+IPCLYVFVEIKIDV  LI TIK+N  D   +ILAGTIQFASAIR AKPELE
Sbjct: 126 CLVPIDATKIPCLYVFVEIKIDVECLISTIKLNLKDYKSVILAGTIQFASAIREAKPELE 185

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPARE-----SDFNLVFIADGRFHLEAFMISNPG 115
           + G   +IPQSKPLSAGEVLGCTAPKI +       S+  +VF+ADGRFHLEAFMI+NPG
Sbjct: 186 RLGLYALIPQSKPLSAGEVLGCTAPKISSNSMVGGGSETVVVFVADGRFHLEAFMIANPG 245

Query: 116 IKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERL 175
           I TFRYDPY+GKLFLEEYD++GM+E RK AI+ A KEAR WGIVLGTLGRQGNPRIL+RL
Sbjct: 246 ISTFRYDPYMGKLFLEEYDHRGMKEVRKGAIQMA-KEARNWGIVLGTLGRQGNPRILDRL 304

Query: 176 QKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEA 235
           +K+M +KGF Y V++MSEISP R+ALFED +DAWIQIACPRLSIDWG+AF KPLLTPFEA
Sbjct: 305 EKKMREKGFSYTVVLMSEISPVRIALFEDCIDAWIQIACPRLSIDWGEAFKKPLLTPFEA 364

Query: 236 EIALGVIPGWWERDKEREREREESKSCGGCGNED--KNCDGDGDYPMDYYAQDGGEWNSS 293
           EIALG +PGWWE+               GCG++D    C   GDYPMDYYAQDGGEWNS+
Sbjct: 365 EIALGDLPGWWEKS-------------AGCGSDDLCSGCTNGGDYPMDYYAQDGGEWNSA 411

Query: 294 YVKK 297
           YVKK
Sbjct: 412 YVKK 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240408|ref|NP_201009.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] gi|20259528|gb|AAM13884.1| unknown protein [Arabidopsis thaliana] gi|21436215|gb|AAM51395.1| unknown protein [Arabidopsis thaliana] gi|110742463|dbj|BAE99150.1| hypothetical protein [Arabidopsis thaliana] gi|332010170|gb|AED97553.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 253/313 (80%), Gaps = 17/313 (5%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNY-SDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T+IPCLYVFVEI+IDV  L++TI +N  SD   +ILAGTIQF SAIRA KPEL
Sbjct: 127 CLVPIDSTKIPCLYVFVEIQIDVKCLLNTIHLNLASDVKNIILAGTIQFTSAIRAVKPEL 186

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARES--DFNLVFIADGRFHLEAFMISNPGIK 117
           EKQGF V+IPQSKPLSAGEVLGCTAPK+   E   D  LVF+ADGRFHLEAFMI+NP IK
Sbjct: 187 EKQGFNVLIPQSKPLSAGEVLGCTAPKVKTVEDCKDQVLVFVADGRFHLEAFMIANPKIK 246

Query: 118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
            FRYDPYLGKLFLEEYD+KGMRETR RAI +A +EA+TWGIVLGTLGRQGNP+ILERL+K
Sbjct: 247 AFRYDPYLGKLFLEEYDHKGMRETRMRAIARA-REAKTWGIVLGTLGRQGNPKILERLEK 305

Query: 178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
           +M +KG D  V++MSE+SP RVALFEDSVDAW+QIACPRLSIDWG+AF KPLLT FEAEI
Sbjct: 306 KMMEKGIDSTVVLMSELSPTRVALFEDSVDAWVQIACPRLSIDWGEAFLKPLLTTFEAEI 365

Query: 238 ALGVIPGWWERDKERERE------REESKSCGGCGNED-----KNCDG--DGDYPMDYYA 284
           ALG I GWWE D            +E+ ++   C NE+     K+ DG  DGDYPMDYYA
Sbjct: 366 ALGFIRGWWENDSSSRVNSSSGCCKEDKETSCACKNENVKDDKKDNDGALDGDYPMDYYA 425

Query: 285 QDGGEWNSSYVKK 297
           Q+GGEWNSSY+KK
Sbjct: 426 QEGGEWNSSYLKK 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176920|dbj|BAB10164.1| unnamed protein product [Arabidopsis thaliana]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 221/313 (70%), Positives = 253/313 (80%), Gaps = 17/313 (5%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNY-SDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T+IPCLYVFVEI+IDV  L++TI +N  SD   +ILAGTIQF SAIRA KPEL
Sbjct: 142 CLVPIDSTKIPCLYVFVEIQIDVKCLLNTIHLNLASDVKNIILAGTIQFTSAIRAVKPEL 201

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARES--DFNLVFIADGRFHLEAFMISNPGIK 117
           EKQGF V+IPQSKPLSAGEVLGCTAPK+   E   D  LVF+ADGRFHLEAFMI+NP IK
Sbjct: 202 EKQGFNVLIPQSKPLSAGEVLGCTAPKVKTVEDCKDQVLVFVADGRFHLEAFMIANPKIK 261

Query: 118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
            FRYDPYLGKLFLEEYD+KGMRETR RAI +A +EA+TWGIVLGTLGRQGNP+ILERL+K
Sbjct: 262 AFRYDPYLGKLFLEEYDHKGMRETRMRAIARA-REAKTWGIVLGTLGRQGNPKILERLEK 320

Query: 178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
           +M +KG D  V++MSE+SP RVALFEDSVDAW+QIACPRLSIDWG+AF KPLLT FEAEI
Sbjct: 321 KMMEKGIDSTVVLMSELSPTRVALFEDSVDAWVQIACPRLSIDWGEAFLKPLLTTFEAEI 380

Query: 238 ALGVIPGWWERDKERERE------REESKSCGGCGNED-----KNCDG--DGDYPMDYYA 284
           ALG I GWWE D            +E+ ++   C NE+     K+ DG  DGDYPMDYYA
Sbjct: 381 ALGFIRGWWENDSSSRVNSSSGCCKEDKETSCACKNENVKDDKKDNDGALDGDYPMDYYA 440

Query: 285 QDGGEWNSSYVKK 297
           Q+GGEWNSSY+KK
Sbjct: 441 QEGGEWNSSYLKK 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529829|ref|XP_003533490.1| PREDICTED: diphthamide biosynthesis protein 1-like [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/313 (68%), Positives = 251/313 (80%), Gaps = 15/313 (4%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CLVP+D T IPCLY+FV+IKIDV   +DT+ +N      L++AGTIQFASAIR AKP+LE
Sbjct: 143 CLVPIDSTTIPCLYIFVDIKIDVPHFVDTLILNLHKAKTLVIAGTIQFASAIRTAKPQLE 202

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPAR------ESDFNLVFIADGRFHLEAFMISNP 114
           + GF+V+IPQSKPLSAGEVLGCTAPK+ ++      ES   LVF+ADGRFHLEAFMI+NP
Sbjct: 203 ELGFRVLIPQSKPLSAGEVLGCTAPKVSSKLLGDDGESSV-LVFVADGRFHLEAFMIANP 261

Query: 115 GIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174
           GI+ FRYDPY+GKLFLEEYD+ GM+ +RK AI KA +EAR+WG+VLGTLGRQGNPRILER
Sbjct: 262 GIRAFRYDPYMGKLFLEEYDHLGMKRSRKNAIFKAREEARSWGLVLGTLGRQGNPRILER 321

Query: 175 LQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFE 234
           L+K M  +GFDY V++MSE+SPAR+ALFEDS+DAWIQIACPRLSIDWG+AF KP+LTPFE
Sbjct: 322 LEKMMRDRGFDYTVVLMSEMSPARIALFEDSIDAWIQIACPRLSIDWGEAFVKPVLTPFE 381

Query: 235 AEIALGVIPGWWERDKEREREREESKSCGGC--GNEDKNCDGDGDYPMDYYAQDGGEWNS 292
           A+IALGVIPGWWE++ E     +    CG    G ED      GDYPMDYYAQDGGEWNS
Sbjct: 382 ADIALGVIPGWWEKNNEVVCCNKSGSCCGDAKGGGEDFG----GDYPMDYYAQDGGEWNS 437

Query: 293 SYVKKKLMFRPSA 305
           SYV K    RP A
Sbjct: 438 SYVIKST--RPPA 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544449|ref|XP_003540663.1| PREDICTED: diphthamide biosynthesis protein 1-like [Glycine max]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/308 (67%), Positives = 249/308 (80%), Gaps = 11/308 (3%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNY-SDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T IPCLYVFV+IKIDV   +DT+ +N  +    L++AGTIQFASAIRAAKP+L
Sbjct: 135 CLVPIDATTIPCLYVFVDIKIDVPHFVDTLSLNLLAQTKTLVVAGTIQFASAIRAAKPQL 194

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARE--------SDFNLVFIADGRFHLEAFMI 111
           E+ GF+V+IPQSKPLSAGEVLGCTAPK+ + +         +  LVF+ADGRFHLEAFMI
Sbjct: 195 EELGFRVLIPQSKPLSAGEVLGCTAPKVSSSKLLGGGGDIGECVLVFVADGRFHLEAFMI 254

Query: 112 SNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRI 171
           +NPGI+ FRYDPY+GKLFLEEYD+ GM+ +RK AI KA +EAR+WG+VLGTLGRQGNPRI
Sbjct: 255 ANPGIRAFRYDPYMGKLFLEEYDHLGMKRSRKNAIFKA-REARSWGLVLGTLGRQGNPRI 313

Query: 172 LERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLT 231
           LERL++ M ++G DY V++MSE+SP R+ALFEDS+DAWIQIACPRLSIDWG+AF KP+LT
Sbjct: 314 LERLERMMRERGLDYTVVLMSEMSPTRIALFEDSLDAWIQIACPRLSIDWGEAFVKPVLT 373

Query: 232 PFEAEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNC-DGDGDYPMDYYAQDGGEW 290
           PFEAE+ALGVIPGWWE+++  E         G C  + K   D  GDYPMDYYAQDGGEW
Sbjct: 374 PFEAEVALGVIPGWWEKNEVCEEGEGCCNKSGSCCEDAKGGEDFGGDYPMDYYAQDGGEW 433

Query: 291 NSSYVKKK 298
           NSSYVKK 
Sbjct: 434 NSSYVKKS 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144867|ref|XP_002325444.1| predicted protein [Populus trichocarpa] gi|222862319|gb|EEE99825.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/308 (69%), Positives = 245/308 (79%), Gaps = 32/308 (10%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGK-LILAGTIQFASAIRAAKPEL 59
           CL+P+D T+IPCLYVFVEIKIDV+RLI+TI +N+    + ++LAGTIQFASAIR AKPEL
Sbjct: 123 CLIPIDATKIPCLYVFVEIKIDVSRLINTISLNFGTHKRNIVLAGTIQFASAIREAKPEL 182

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPAR--------ESDFNLVFIADGRFHLEAFMI 111
           E  GF V+IPQSKPLSAGEVLGCTAPK+           E +  LVF+ADGRFHLEAFMI
Sbjct: 183 ENNGFVVLIPQSKPLSAGEVLGCTAPKMSKNVVGNLGFSEEEMVLVFVADGRFHLEAFMI 242

Query: 112 SNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRI 171
           +NPGIK FRYDPYLGKLFLEEYD+KGM+E RK+AIE+A K AR+WG+VLGTLGRQGNPRI
Sbjct: 243 ANPGIKAFRYDPYLGKLFLEEYDHKGMKEVRKKAIERA-KGARSWGVVLGTLGRQGNPRI 301

Query: 172 LERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLT 231
           LERL+K+M +KGFDY+V++MSEISP R+ALFEDSVDAWIQIACPRLSIDWGDAF KPLLT
Sbjct: 302 LERLEKKMGEKGFDYMVVLMSEISPGRIALFEDSVDAWIQIACPRLSIDWGDAFKKPLLT 361

Query: 232 PFEAEIALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGD--GDYPMDYYAQDGGE 289
           PFEAEIALG                       GC  + K  + D  G+YPMDYYAQDGGE
Sbjct: 362 PFEAEIALG--------------------DLAGCNGDAKGVEKDFGGEYPMDYYAQDGGE 401

Query: 290 WNSSYVKK 297
           WNSSYVKK
Sbjct: 402 WNSSYVKK 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466198|ref|XP_002265458.1| PREDICTED: diphthamide biosynthesis protein 1-like [Vitis vinifera]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/312 (67%), Positives = 242/312 (77%), Gaps = 11/312 (3%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CLVP+D T IPCLYVFVEI IDV+ LI T+K+N    G+++LAGTIQF+SAIRAAKPELE
Sbjct: 139 CLVPIDATSIPCLYVFVEIAIDVDLLIGTVKLNLPPAGQIVLAGTIQFSSAIRAAKPELE 198

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPARE---SDFNLVFIADGRFHLEAFMISNPGIK 117
           K GF+V+IPQSKPLSAGEVLGCTAPKI        D   VF+ADGRFHLEAFMI+NP IK
Sbjct: 199 KAGFRVLIPQSKPLSAGEVLGCTAPKISKTSFISDDVVAVFVADGRFHLEAFMIANPAIK 258

Query: 118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
            +RYDPY+G+L LEEYD+KGM+++RK AI KA +E + WGIVLGTLGRQGNPRIL  LQ 
Sbjct: 259 AYRYDPYIGRLLLEEYDHKGMKDSRKNAILKA-REGKNWGIVLGTLGRQGNPRILNMLQD 317

Query: 178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
           RM +KGF + V++MSEISPARV LF DSVDAWIQIACPRLSIDWGDAF KPLL PFEAEI
Sbjct: 318 RMREKGFSWTVVLMSEISPARVLLFGDSVDAWIQIACPRLSIDWGDAFGKPLLNPFEAEI 377

Query: 238 ALGVIPGWWERDKEREREREESKSCGGCGNEDKNC-----DGDGDYPMDYYAQDGGEWNS 292
           ALG IPGWWE+      +  ++  C     ++  C     D   DYPMDYYAQDGGEWNS
Sbjct: 378 ALGFIPGWWEKASIANSDCIKNGLCCNDNCDNGVCAKDKVDVSQDYPMDYYAQDGGEWNS 437

Query: 293 SYVKKKLMFRPS 304
           SY KK    RPS
Sbjct: 438 SYAKKST--RPS 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793763|ref|XP_002864766.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310601|gb|EFH41025.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/313 (70%), Positives = 249/313 (79%), Gaps = 17/313 (5%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNY-SDPGKLILAGTIQFASAIRAAKPEL 59
           CLVP+D T+IPCLYVFVEI+IDV  L++TI +N  SD   +ILAGTIQF SAIRA KPEL
Sbjct: 127 CLVPIDSTKIPCLYVFVEIQIDVKCLLNTIHMNLASDAKNIILAGTIQFTSAIRAVKPEL 186

Query: 60  EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARES--DFNLVFIADGRFHLEAFMISNPGIK 117
           EKQGF VMIPQSKPLSAGEVLGCTAPKI   E   D  LVF+ADGRFHLEAFMI+NP IK
Sbjct: 187 EKQGFNVMIPQSKPLSAGEVLGCTAPKIKTVEDGKDQVLVFVADGRFHLEAFMIANPKIK 246

Query: 118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
            FRYDPYLGKLFLEEYD+KGMRETR+RA     ++A+TWGIVLGTLGRQGNP ILERL+K
Sbjct: 247 AFRYDPYLGKLFLEEYDHKGMRETRRRA-IARARDAKTWGIVLGTLGRQGNPMILERLEK 305

Query: 178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
           +M +KG D  V++MSE+SP RVALFEDSVDAW+QIACPRLSIDWG+AF KPLLT FEAEI
Sbjct: 306 KMVEKGIDSTVVLMSELSPTRVALFEDSVDAWVQIACPRLSIDWGEAFLKPLLTTFEAEI 365

Query: 238 ALGVIPGWWERDKER---------EREREESKSCGGCGNED--KNCDG--DGDYPMDYYA 284
           ALG I GWWE              + ++E S +C     ED  K+ DG  DGDYPMDYYA
Sbjct: 366 ALGFIRGWWENGSSSRVESSSGCCKEDKERSCACKNEKVEDDKKDNDGALDGDYPMDYYA 425

Query: 285 QDGGEWNSSYVKK 297
           Q+GGEWNSSY+KK
Sbjct: 426 QEGGEWNSSYLKK 438

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2174048	453	AT5G62030 "AT5G62030" [Arabido	0.942	0.651	0.700	4.2e-111
UNIPROTKB|F1NBE0	400	F1NBE0 "Diphthamide biosynthes	0.753	0.59	0.555	2.9e-72
UNIPROTKB|Q5ZHX9	409	DPH1 "Diphthamide biosynthesis	0.760	0.581	0.546	2.9e-72
ASPGD|ASPL0000003927	431	AN6283 [Emericella nidulans (t	0.769	0.559	0.512	8.7e-69
DICTYBASE|DDB_G0284257	472	dph1 "diphthamide biosynthesis	0.769	0.510	0.496	8.7e-69
POMBASE|SPBC3B8.05	436	SPBC3B8.05 "diphthamide biosyn	0.769	0.552	0.505	2.3e-66
ZFIN|ZDB-GENE-050417-411	439	dph1 "DPH1 homolog (S. cerevis	0.757	0.539	0.504	7.7e-66
FB|FBgn0036194	454	CG11652 [Drosophila melanogast	0.766	0.528	0.485	2e-65
UNIPROTKB|Q3SYT1	438	DPH1 "Diphthamide biosynthesis	0.763	0.545	0.493	2.6e-65
UNIPROTKB|F1MGR8	438	DPH1 "Diphthamide biosynthesis	0.763	0.545	0.493	3.3e-65

TAIR|locus:2174048 AT5G62030 "AT5G62030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 220/314 (70%), Positives = 248/314 (78%)

Query:     1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNY-SDPGKLILAGTIQFASAIRAAKPEL 59
             CLVP+D T+IPCLYVFVEI+IDV  L++TI +N  SD   +ILAGTIQF SAIRA KPEL
Sbjct:   127 CLVPIDSTKIPCLYVFVEIQIDVKCLLNTIHLNLASDVKNIILAGTIQFTSAIRAVKPEL 186

Query:    60 EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARES--DFNLVFIADGRFHLEAFMISNPGIK 117
             EKQGF V+IPQSKPLSAGEVLGCTAPK+   E   D  LVF+ADGRFHLEAFMI+NP IK
Sbjct:   187 EKQGFNVLIPQSKPLSAGEVLGCTAPKVKTVEDCKDQVLVFVADGRFHLEAFMIANPKIK 246

Query:   118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
              FRYDPYLGKLFLEEYD+KGMRETR RAI +A +EA+TWGIVLGTLGRQGNP+ILERL+K
Sbjct:   247 AFRYDPYLGKLFLEEYDHKGMRETRMRAIARA-REAKTWGIVLGTLGRQGNPKILERLEK 305

Query:   178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
             +M +KG D  V++MSE+SP RVALFEDSVDAW+QIACPRLSIDWG+AF KPLLT FEAEI
Sbjct:   306 KMMEKGIDSTVVLMSELSPTRVALFEDSVDAWVQIACPRLSIDWGEAFLKPLLTTFEAEI 365

Query:   238 ALGVIPGWWXXXXXXXXXXXXS-------KSCGGCGNED-----KNCDG--DGDYPMDYY 283
             ALG I GWW                     SC  C NE+     K+ DG  DGDYPMDYY
Sbjct:   366 ALGFIRGWWENDSSSRVNSSSGCCKEDKETSCA-CKNENVKDDKKDNDGALDGDYPMDYY 424

Query:   284 AQDGGEWNSSYVKK 297
             AQ+GGEWNSSY+KK
Sbjct:   425 AQEGGEWNSSYLKK 438

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|F1NBE0 F1NBE0 "Diphthamide biosynthesis protein 1" [Gallus gallus (taxid:9031)]

 Score = 689 (247.6 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
 Identities = 136/245 (55%), Positives = 185/245 (75%)

Query:     3 VPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEK 61
             VP+D TR +  LYVFV+IKID +  +DTI+ N++    L L  TIQF +A++AA  EL+ 
Sbjct:   108 VPIDATRGLKMLYVFVDIKIDTSHFLDTIRFNFAVGSSLALVSTIQFVAAVQAASQELQS 167

Query:    62 QGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRY 121
             Q +KV +PQ KPLS GE+LGCT+P++ AR++D  +V++ DGRFHLE+ MI+NPGI  +RY
Sbjct:   168 Q-YKVCVPQCKPLSPGEILGCTSPRL-ARDTDA-IVYLGDGRFHLESIMIANPGIPAYRY 224

Query:   122 DPYLGKLFLEE-YDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRME 180
             DPY  K+F +E Y +  MRE R+ AI  A + AR WG++LGTLGRQG+P IL+ L+ R+ 
Sbjct:   225 DPY-SKVFSQEHYAHDRMREARQAAIRSAAR-ARCWGLLLGTLGRQGSPAILQHLESRLR 282

Query:   181 KKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALG 240
               G  +V +++SEI P+++ LF DSVDAW+QIACPRLSIDWG+AF+KPLLTP+EA +ALG
Sbjct:   283 ALGRPFVRVLLSEIFPSKLQLF-DSVDAWVQIACPRLSIDWGEAFSKPLLTPYEAAVALG 341

Query:   241 VIPGW 245
              I  W
Sbjct:   342 DIE-W 345

GO:0005737 "cytoplasm" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

UNIPROTKB|Q5ZHX9 DPH1 "Diphthamide biosynthesis protein 1" [Gallus gallus (taxid:9031)]

 Score = 689 (247.6 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
 Identities = 135/247 (54%), Positives = 185/247 (74%)

Query:     1 CLVPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPEL 59
             CL+P+D TR +  LYVFV+IKID +  +DTI+ N++    L L  TIQF +A++AA  EL
Sbjct:   130 CLIPIDATRGLKMLYVFVDIKIDTSHFLDTIRFNFAVGSSLALVSTIQFVAAVQAASQEL 189

Query:    60 EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
             + Q +KV +PQ KPLS GE+LGCT+P++ AR++D  +V++ DGRFHLE+ MI+NPGI  +
Sbjct:   190 QSQ-YKVCVPQCKPLSPGEILGCTSPRL-ARDTDA-IVYLGDGRFHLESIMIANPGIPAY 246

Query:   120 RYDPYLGKLFLEE-YDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
             RYDPY  K+F +E Y +  M   R+ AI  A + AR WG++LGTLGRQG+P IL+ L+ R
Sbjct:   247 RYDPY-SKVFSQEHYAHDRMHGARQAAIRSAAR-ARCWGLLLGTLGRQGSPAILQHLESR 304

Query:   179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
             +   G  +V +++SEI P+++ LF DSVDAW+QIACPRLSIDWG+AF+KPLLTP+EA +A
Sbjct:   305 LRALGRPFVRVLLSEIFPSKLQLF-DSVDAWVQIACPRLSIDWGEAFSKPLLTPYEAAVA 363

Query:   239 LGVIPGW 245
             LG I  W
Sbjct:   364 LGDIE-W 369

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ASPGD|ASPL0000003927 AN6283 [Emericella nidulans (taxid:162425)]

 Score = 659 (237.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 126/246 (51%), Positives = 171/246 (69%)

Query:     1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILA-GTIQFASAIRAAKPEL 59
             CL+PVD T+I  LY+FV+I ID + LI T++ N+  PGK I   GTIQF + +   KP L
Sbjct:   161 CLIPVDVTKIKTLYIFVDISIDTSHLIATLERNFQ-PGKTIATVGTIQFNATLHGLKPVL 219

Query:    60 EKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTF 119
             E+ GF V+IPQ  PLS GE+LGCT+P + A++ D+ L+++ DGRFHLE+ MI NP I  +
Sbjct:   220 ERAGFNVVIPQITPLSKGEILGCTSPSLSAQQIDY-LLYLGDGRFHLESAMIHNPSIPAY 278

Query:   120 RYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRM 179
             RYDPY   L  E YD+  M   R+ AI  A + A+ WGI+LG+LGRQGNP  +  ++  +
Sbjct:   279 RYDPYSRTLSRESYDHTEMHTLRRDAIAAA-RTAKKWGIILGSLGRQGNPHTMAMIESHL 337

Query:   180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
              ++G  +V +++SEI P ++A   D V+ W+QIACPRLSIDWG AF +PLLTP+EA IAL
Sbjct:   338 NERGIPFVNLLLSEIFPGKLAAMSD-VECWVQIACPRLSIDWGYAFPRPLLTPYEALIAL 396

Query:   240 GVIPGW 245
             GV   W
Sbjct:   397 GVRDDW 402

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

DICTYBASE|DDB_G0284257 dph1 "diphthamide biosynthesis protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 650 (233.9 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 125/252 (49%), Positives = 182/252 (72%)

Query:     1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
             CL+P+D + I  LYVFV+I+ D+   I+T+K N+    KLI+  TIQF++++++++  L 
Sbjct:   204 CLIPIDVSEIKMLYVFVDIQFDLQHFIETLKFNFKQTQKLIMVSTIQFSASLQSSREPLS 263

Query:    61 KQGFKVMIPQSKPLSAGEVLGCTAPKI----PARESDFN--LVFIADGRFHLEAFMISNP 114
             +    + IPQ KPLS GE+LGCT+PKI    P  + + N  ++++ DGRFHLE+ MISNP
Sbjct:   264 EYFSNIFIPQEKPLSPGEILGCTSPKIKFTSPDGDEENNEIVIYLGDGRFHLESIMISNP 323

Query:   115 GIKTFRYDPYLGKLF-LEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILE 173
              +K++RYDPY  K+F LE+YD + M + R+ AIE A K A  +GI+LGTLGRQG+P+IL+
Sbjct:   324 HVKSYRYDPY-SKVFSLEKYDFQEMYKIRRDAIETASK-ATKFGIILGTLGRQGSPKILD 381

Query:   174 RLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPF 233
              L++ ++  G  Y  +++SEI PA++ +F D +++WIQIACPRLSIDWG AFT PLL P+
Sbjct:   382 HLEQLLKSNGKHYTTVLLSEIFPAKLDMFSD-IESWIQIACPRLSIDWGYAFTTPLLNPY 440

Query:   234 EAEIALGVIPGW 245
             EAE+ LG I  W
Sbjct:   441 EAEVCLGGI-NW 451

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBC3B8.05 SPBC3B8.05 "diphthamide biosynthesis protein Dph1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 646 (232.5 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 127/251 (50%), Positives = 172/251 (68%)

Query:     1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
             CL+PVD T I  LYVFV+IKID+  ++ ++K N     +L L GTIQF  ++ + K  L+
Sbjct:   152 CLIPVDQTPIKVLYVFVDIKIDLQHVVSSLKHNLPSNSRLALVGTIQFVGSLNSIKDALQ 211

Query:    61 ------KQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNP 114
                   K GF V+IPQ+KPLS GE LGCT+P I     D  L++I DGRFHLE+ MI+NP
Sbjct:   212 IQDEDGKGGFYVVIPQAKPLSPGEALGCTSPYIEKGSVDA-LIYIGDGRFHLESVMIANP 270

Query:   115 GIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174
              +  +RYDPY  KL +E Y ++ M+  R  A+EKA + A+ +G++ GTLGRQG+P++LE 
Sbjct:   271 DLPAYRYDPYSHKLSIESYAHEEMKSIRYSAVEKA-RTAKKFGLIQGTLGRQGSPKVLEN 329

Query:   175 LQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFE 234
             L+  + K   D+V ++MSEI P+R+  F D +DAWIQ+ACPRLSIDWG AF  PLLTP+E
Sbjct:   330 LKNTLRKNNKDFVCVLMSEIFPSRLGQFSD-IDAWIQVACPRLSIDWGYAFPAPLLTPYE 388

Query:   235 AEIALGVIPGW 245
             A  A  V+P W
Sbjct:   389 ASAAFNVVP-W 398

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:2000765 "regulation of cytoplasmic translation" evidence=IC

ZFIN|ZDB-GENE-050417-411 dph1 "DPH1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 642 (231.1 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 125/248 (50%), Positives = 178/248 (71%)

Query:     1 CLVPVDFTR-IPCLYVFVEIKIDVNRLIDTIKVNYSDPGK-LILAGTIQFASAIRAAKPE 58
             CL+P+D T  I  LYVFV+I+ID    +DT++ N+  PG+ L L  TIQF +A++AA   
Sbjct:   143 CLIPIDSTEGIKMLYVFVDIQIDTAHFLDTLRFNFP-PGRSLALVSTIQFVAALQAASAA 201

Query:    59 LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
             L K  ++V++PQ +PLS GE+LGCT+P++    +   ++++ DGRFHLE+ MI+NP    
Sbjct:   202 L-KPDYEVLVPQCRPLSPGEILGCTSPRLDKHVNA--VIYLGDGRFHLESIMIANPDTPA 258

Query:   119 FRYDPYLGKLFLEEY-DNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
             +RYDPY  K+F  EY D+  MR TR +AIE A + A+ WG++LGTLGRQGNP+ILE L+ 
Sbjct:   259 YRYDPY-SKVFSREYYDHDAMRATRLKAIESA-RSAQRWGLILGTLGRQGNPKILEHLES 316

Query:   178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
             +++  G  +  +++SEI P ++ L  D VDAW+QIACPRLSIDWG AF+KPLL+P+EA +
Sbjct:   317 QLKSLGRSFTRVLLSEIFPRKLELLAD-VDAWVQIACPRLSIDWGTAFSKPLLSPYEAAV 375

Query:   238 ALGVIPGW 245
             AL  + GW
Sbjct:   376 ALQQV-GW 382

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0036194 CG11652 [Drosophila melanogaster (taxid:7227)]

 Score = 636 (228.9 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 120/247 (48%), Positives = 179/247 (72%)

Query:     1 CLVPVDFT-RIPCLYVFVEIKIDVNRLIDTIKVNYS-DPGKLILAGTIQFASAIRAAKPE 58
             CL+PVD T  I  LY+FV+IKID    +D++K+N+  + G++ L  TIQF + ++AA  E
Sbjct:   139 CLIPVDQTCGIKVLYIFVDIKIDPLHFLDSVKLNFRPEVGQIALVSTIQFVTTLQAASTE 198

Query:    59 LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
             L+  G+ V++PQ+KPLS GE+LGCT+P++P  E+   ++++ DGRFHLE+ MI+NP +K 
Sbjct:   199 LKAAGYDVIVPQAKPLSPGEILGCTSPQLP--ETTKMIIYLGDGRFHLESAMIANPLLKA 256

Query:   119 FRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
             ++YDPY  K   E+YD+  M+  R  A+++A K+AR  GI+LGTLGRQG+ R+   L+KR
Sbjct:   257 YKYDPYEKKFTTEQYDHSAMQNLRLDAVQRA-KKARRIGIILGTLGRQGSSRVHRFLEKR 315

Query:   179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
             +  KG +   +++SEI P ++ALF D +DA++QIACPRLSIDWG AF++PLL P+E  + 
Sbjct:   316 LHAKGIETTTLLLSEIFPQKLALFAD-IDAFVQIACPRLSIDWGSAFSQPLLNPYELSVV 374

Query:   239 LGVIPGW 245
             LG +  W
Sbjct:   375 LGDVE-W 380

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|Q3SYT1 DPH1 "Diphthamide biosynthesis protein 1" [Bos taurus (taxid:9913)]

 Score = 629 (226.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 122/247 (49%), Positives = 176/247 (71%)

Query:     1 CLVPVDFTR--IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPE 58
             CLVP+D +      LYVFV+I+ID   L+D+I++ +     L L  TIQF S ++AA  E
Sbjct:   132 CLVPMDTSAQDFRVLYVFVDIRIDTAHLLDSIRLTFPPASALALVSTIQFVSTLQAAAQE 191

Query:    59 LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
             L+ + ++V +PQ KPLS GE+LGCT+P +P +E +  +V++ DGRFHLE+ MI+NP I  
Sbjct:   192 LKAE-YRVSVPQCKPLSPGEILGCTSPCLP-KEVEA-VVYLGDGRFHLESVMIANPNISA 248

Query:   119 FRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
             +RYDPY   L  E YD++ M+  R+ AI  A + A++WG++LGTLGRQG+P+ILE L+ R
Sbjct:   249 YRYDPYSKVLSREHYDHQRMQANRQEAIATA-RSAKSWGLILGTLGRQGSPKILEHLESR 307

Query:   179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
             ++  G  +V +++SEI P++++L  + VD W+Q+ACPRLSIDWG AF KPLLTP+EA +A
Sbjct:   308 LQALGLPFVRLLLSEIFPSKLSLLPE-VDVWVQVACPRLSIDWGTAFPKPLLTPYEAAVA 366

Query:   239 LGVIPGW 245
             L  I  W
Sbjct:   367 LRDI-SW 372

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

UNIPROTKB|F1MGR8 DPH1 "Diphthamide biosynthesis protein 1" [Bos taurus (taxid:9913)]

 Score = 628 (226.1 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 122/247 (49%), Positives = 176/247 (71%)

Query:     1 CLVPVDFTR--IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPE 58
             CLVP+D +      LYVFV+I+ID   L+D+I++ +     L L  TIQF S ++AA  E
Sbjct:   132 CLVPMDTSAQDFRVLYVFVDIRIDTAHLLDSIRLTFPPASALALVSTIQFVSTLQAAAQE 191

Query:    59 LEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
             L+ + ++V +PQ KPLS GE+LGCT+P +P +E +  +V++ DGRFHLE+ MI+NP I  
Sbjct:   192 LKAE-YRVSVPQCKPLSPGEILGCTSPCLP-KEVEA-VVYLGDGRFHLESVMIANPNISA 248

Query:   119 FRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
             +RYDPY   L  E YD++ M+  R+ AI  A + A++WG++LGTLGRQG+P+ILE L+ R
Sbjct:   249 YRYDPYSKVLSREHYDHQRMQANRQEAIATA-QSAKSWGLILGTLGRQGSPKILEHLESR 307

Query:   179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
             ++  G  +V +++SEI P++++L  + VD W+Q+ACPRLSIDWG AF KPLLTP+EA +A
Sbjct:   308 LQALGLPFVRLLLSEIFPSKLSLLPE-VDVWVQVACPRLSIDWGTAFPKPLLTPYEAAVA 366

Query:   239 LGVIPGW 245
             L  I  W
Sbjct:   367 LRDI-SW 372

GO:0008283 "cell proliferation" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
TIGR00322	319	TIGR00322, diphth2_R, diphthamide biosynthesis enz	1e-102
pfam01866	300	pfam01866, Diphthamide_syn, Putative diphthamide s	1e-100
COG1736	347	COG1736, DPH2, Diphthamide synthase subunit DPH2 [	4e-66
TIGR03682	308	TIGR03682, arCOG04112, diphthamide biosynthesis en	3e-38
TIGR00272	496	TIGR00272, DPH2, diphthamide biosynthesis protein	4e-15

>gnl|CDD|232919 TIGR00322, diphth2_R, diphthamide biosynthesis enzyme Dph1/Dph2 domain

 Score =  300 bits (771), Expect = e-102
 Identities = 117/243 (48%), Positives = 157/243 (64%), Gaps = 7/243 (2%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLI-LAGTIQFASAIRAAKPEL 59
           CL P+  +RIP LYVFV I IDV  L++ +K N  D GK I L  T+Q+  A+   K  L
Sbjct: 80  CLSPIT-SRIPVLYVFVYIPIDVEHLVEALKENLPDKGKRIALVTTVQYIHALDEVKKIL 138

Query: 60  EKQGFK-VMIPQSKP--LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGI 116
           E+ G++ V+IPQ KP  LS G+VLGCT P +   E D  L+FI DGRFHL    ++ P  
Sbjct: 139 EEAGYEPVIIPQGKPRVLSPGQVLGCTFPALRNDEVDAVLIFIGDGRFHLLGLALATPKP 198

Query: 117 KTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQ 176
           K + YDPY G+L  EEYD   +   R   IEKA K+A+  GI++GTLG QG   + ERL+
Sbjct: 199 KVYVYDPYSGELTEEEYDANKLLRRRYALIEKA-KDAKKVGIIVGTLGGQGRLELAERLK 257

Query: 177 KRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAE 236
           + ++K G    +I + EI+PA++A F   +DA++Q ACPRLSID G  F KP+LTP+E E
Sbjct: 258 ELLKKAGKKAYLISVGEINPAKLANF-PEIDAFVQTACPRLSIDDGKDFYKPVLTPYELE 316

Query: 237 IAL 239
           +AL
Sbjct: 317 MAL 319

Archaea and Eukaryotes, but not Eubacteria, share the property of having a covalently modified residue, 2'-[3-carboxamido-3-(trimethylammonio)propyl]histidine, as a part of a cytosolic protein. The modified His, termed diphthamide, is part of translation elongation factor EF-2 and is the site for ADP-ribosylation by diphtheria toxin. This model includes both Dph1 and Dph2 from Saccharomyces cerevisiae, although only Dph2 is found in the Archaea (see TIGR03682). Dph2 has been shown to act analogously to the radical SAM (rSAM) family (pfam04055), with 4Fe-4S-assisted cleavage of S-adenosylmethionine to create a free radical, but a different organic radical than in rSAM. Length = 319

>gnl|CDD|216748 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein

 Score =  296 bits (761), Expect = e-100
 Identities = 108/283 (38%), Positives = 152/283 (53%), Gaps = 38/283 (13%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
           CL PV    IP LYVFV IKIDV  L++ +K N     ++ L  T+Q    +   K  LE
Sbjct: 56  CLSPVR-YEIPVLYVFVYIKIDVEHLLEKLKENLPGYKRIGLVTTVQHVHLLDEVKEILE 114

Query: 61  KQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFR 120
           ++   +  P  +PLS G+VLGCT   + + +    ++++ DGRFH     +S  G   + 
Sbjct: 115 EKEVVIGRPDGRPLSPGQVLGCTFSALRSADDADAVLYVGDGRFHPLGIALS-TGKPVYA 173

Query: 121 YDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRME 180
           YDPY  +  +EEYD   M   R  AIEKA  +A+++GI++GT G QG P +  RL+K ++
Sbjct: 174 YDPYSLE--VEEYDADKMLRRRYAAIEKAK-DAKSFGIIVGTKGGQGRPDLARRLKKLLK 230

Query: 181 KKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALG 240
           ++G    +I++ EI+P ++A F   VDA++Q ACPRLSID G  F KPLLTP+EAEIALG
Sbjct: 231 ERGKRAYLILLDEINPDKLANF--DVDAFVQTACPRLSIDDGYRFPKPLLTPYEAEIALG 288

Query: 241 VIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYY 283
                                               DYPMD  
Sbjct: 289 KRS-------------------------------WEDYPMDEI 300

Human DPH1 is a candidate tumour suppressor gene. DPH2 from yeast, which confers resistance to diphtheria toxin, has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown. Length = 300

>gnl|CDD|224650 COG1736, DPH2, Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]

 Score =  210 bits (537), Expect = 4e-66
 Identities = 88/265 (33%), Positives = 138/265 (52%), Gaps = 10/265 (3%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLI-LAGTIQFASAIRAAKPEL 59
           CL PV++  +P +YVF   ++DV+ ++           + I L  T Q    +   K  L
Sbjct: 86  CLPPVEY-ELPVIYVFAFSRVDVDLVVLEATRELKKGSRRIGLITTAQHVHLLEEVKEIL 144

Query: 60  EKQGFKVMI--PQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIK 117
           E +G++V+I   Q++P   G+VLGC    +   ++D  ++++  GRFH     I      
Sbjct: 145 EGRGYEVVIGRGQTRPAYPGQVLGCNFSVLEGVDAD-AVLYVGSGRFHPLGLAIR-TEKP 202

Query: 118 TFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQK 177
            F  DPY GK+  E+ +       R  AI KA+  A+++GI++ T G Q    +   L K
Sbjct: 203 VFAIDPYSGKVREEDPEADRFLRKRYAAISKALD-AKSFGIIVSTKGGQRRLEVARELVK 261

Query: 178 RMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237
            +++ G +  +I++ EISP ++A F D +DA++  ACPR+ ID GD F KPLLTP+E EI
Sbjct: 262 LLKEAGKEVYLIVVDEISPDKLANF-DDIDAFVNTACPRIPIDDGDRFKKPLLTPYEFEI 320

Query: 238 ALGVIPGWWERDKEREREREESKSC 262
           ALG      ER    E    +    
Sbjct: 321 ALGW--RSDERYAFDEIVGNDGGPD 343

Length = 347

>gnl|CDD|234308 TIGR03682, arCOG04112, diphthamide biosynthesis enzyme Dph2

 Score =  137 bits (346), Expect = 3e-38
 Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 18/232 (7%)

Query: 14  YVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQ--S 71
              V+++  + + ++ +K       ++ L  T Q    +   K  LE++G +V+I +   
Sbjct: 79  RSDVDVEEVIEKALENLKGR-----RIGLVTTAQHVHLLEKVKEILEERGIEVVIGKGDG 133

Query: 72  KPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMIS-NPGIKTFRYDPYLGKLFL 130
           +    G+VLGC      + E+D   +F+  G FH     ++       +  DP+ G++  
Sbjct: 134 RVTYPGQVLGCNFSAARSVEAD-AFLFVGTGLFH--PLGLALATNKPVYAADPFSGEV-- 188

Query: 131 EEYDNKGMRETRKR--AIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188
           E+ + +  +  R R   I KA+ +A+ +GI++ T   Q  P + E L+K +E+ G + ++
Sbjct: 189 EDIEAEIDKFLRVRYARISKAL-DAKKFGILVSTKKGQRRPELAEELKKLLEELGKEALL 247

Query: 189 IMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIALG 240
           I++  ISP +  L     DA++  ACPR++ID    F KP+LTP E EI LG
Sbjct: 248 ILLDNISPDQ--LRNLDFDAYVNTACPRIAIDDYARFKKPVLTPQEFEIVLG 297

Members of this family are the archaeal protein Dph2, members of the universal archaeal protein family designated arCOG04112. The chemical function of this protein is analogous to the radical SAM family (pfam04055), although the sequence is not homologous. The chemistry involves [4Fe-4S]-aided formation of a 3-amino-3-carboxypropyl radical rather than the canonical 5'-deoxyadenosyl radical of the radical SAM family. Length = 308

>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2

 Score = 75.0 bits (184), Expect = 4e-15
 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGK--LILAGTI------QFASAI 52
           CL  +    +P +YVF    ID+  +++  +  + D      ++A         Q  + +
Sbjct: 117 CLSAI--QNLPVVYVFGTPPIDLALVVENFQRAFPDLSSKICLMADAPFSKHQSQLYNIL 174

Query: 53  RAAKPELEKQGFKVMIPQSKPLSAGE---VLGCTAPKIPARES--DFNLVFIA--DGRFH 105
           +   P  +     ++ PQ    +  E    +G T   +P      + NLV          
Sbjct: 175 KEVLPG-DLHYTNIIYPQVNTSAVEEKFVTIGRTFH-VPEDVDQQEKNLVLFGQHSSEDL 232

Query: 106 LEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKR-AIEKAMKEARTWGIVLGTLG 164
               + +   + T      +    L E         R+R  +    ++A   GIV+GTLG
Sbjct: 233 HLIHLTTYQDLSTVFQFVPIFDPILPESVTGPFPSLRRRYKLVHVARDAGCIGIVVGTLG 292

Query: 165 RQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDA 224
            +     +  L+K ++  G  + + ++ + +PA++A FED +D ++ + C +  I   + 
Sbjct: 293 VRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANFED-IDIFVLLGCSQSGIIDSNE 351

Query: 225 FTKPLLTPFEAEIALGVIPGW 245
           F +P++TPFE  +AL     W
Sbjct: 352 FYRPIVTPFELNLALSEEVTW 372

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin [Protein fate, Protein modification and repair]. Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG2648	453	consensus Diphthamide biosynthesis protein [Transl	100.0
TIGR00322	332	diphth2_R diphthamide biosynthesis protein 2-relat	100.0
TIGR03682	308	arCOG04112 arCOG04112 universal archaeal diphthami	100.0
PF01866	307	Diphthamide_syn: Putative diphthamide synthesis pr	100.0
TIGR00272	496	DPH2 diphthamide biosynthesis protein 2. This prot	100.0
COG1736	347	DPH2 Diphthamide synthase subunit DPH2 [Translatio	100.0
COG1609	333	PurR Transcriptional regulators [Transcription]	90.02
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	85.72
PRK09492	315	treR trehalose repressor; Provisional	82.55
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	81.92

>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-81  Score=608.73  Aligned_cols=286  Identities=48%  Similarity=0.819  Sum_probs=252.1

Q ss_pred             CCCCCCCCCcCE-EEEcccccCChHHHHHHHHHhCCCCC-eEEEEeccccHhHHHHHHHHHHhCC--CeEEecCCCCCCC
Q 042576            1 CLVPVDFTRIPC-LYVFVEIKIDVNRLIDTIKVNYSDPG-KLILAGTIQFASAIRAAKPELEKQG--FKVMIPQSKPLSA   76 (313)
Q Consensus         1 CL~Pv~~t~ipv-lYVFv~i~iD~~~~i~~i~~~f~~~~-~i~Lv~tiQf~~~l~~~~~~L~~~g--~~v~ipq~~pls~   76 (313)
                      ||+|++  ++|+ +||||+++||++|++++|+.+|++.. +|+|++|+||+|+++++++.|+..+  +++++||.+|+++
T Consensus       113 CLsp~~--~~~~~lYVf~~i~Idl~~~~~~l~~~~~~~~~~I~l~~~i~f~~~l~~~~~~L~~~~~~~~~i~Pq~~p~s~  190 (453)
T KOG2648|consen  113 CLSPID--RLPVVLYVFVDIPIDLDHLVKSLQRNFPQLISQIVLLGTIQFAHSLEALATELKEELLDLEVILPQFKPLSP  190 (453)
T ss_pred             ccCccc--cCCceEEEeecccccHHHHHHHHHhhcccccceeEEeechhhhHHHHHHHHHHhhccCceEEeccCCCCCCC
Confidence            999985  5555 99999999999999999999999766 7999999999999999999998775  7899999999999


Q ss_pred             ccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEE
Q 042576           77 GEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTW  156 (313)
Q Consensus        77 GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~  156 (313)
                      ||++|||+|..++....+++||+|||+||+++.||+||..++|+||||+++++.|.|++.+|+++||++|+||| +|++|
T Consensus       191 ~e~lG~t~p~~~~~~~~~~li~iGD~~~~le~~mi~np~~~~~~ydp~s~kl~~E~y~~~~m~~rR~~~vekar-dA~~i  269 (453)
T KOG2648|consen  191 GEVLGCTSPLLEGREEYDALIFIGDGRFHLESSMIANPGLPAYRYDPYSKKLTRESYDHSRMLRRRYYLVEKAR-DARTI  269 (453)
T ss_pred             ccccceeccCCCCccccceEEEecCCCcchhHHHHhCCCCCeEEeCCccCceeecccchHHHHHHHHHHHHHHh-cCCeE
Confidence            99999999998763457899999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHH
Q 042576          157 GIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAE  236 (313)
Q Consensus       157 GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~  236 (313)
                      |||+||||+||+++++++|+++|+++|||+|+|+||||||+|||||+ |||+||||||||+|||||++|+||||||||++
T Consensus       270 GlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~-eIDvfV~iaCp~lsid~s~~F~kPiltPfEa~  348 (453)
T KOG2648|consen  270 GLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFP-EIDVFVQIACPRLSIDWSKEFYKPLLTPFEAE  348 (453)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCc-cccEEEEEeCcccchhhhhhhccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             HHhCCCCcccccchhhhhhhhhcccCCCCCCCCCCCCCCCCCCcceeccCC-C-C--Cccccc
Q 042576          237 IALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-G-E--WNSSYV  295 (313)
Q Consensus       237 vAL~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ypmd~y~~~~-g-~--w~~~~~  295 (313)
                      +||+.. .||.+.....  -+....|.......-  ...+.||||||+..| | +  ||++..
T Consensus       349 ~Al~~~-~W~~~~~~~~--~~~~~~~~~~~~~~~--~~~~d~pm~~~~~~~~~~~~~~~~~~~  406 (453)
T KOG2648|consen  349 VALNPI-AWTGDYLAPF--VTAIKLLLKESEFHS--SELGDYPMDYYSLGSLGPPPAWTSSND  406 (453)
T ss_pred             HhcCcc-ccCCccccch--hhHHhhhhccccccc--cccccCcccccccccCCcCcccCCccc
Confidence            999987 8887531110  011111111111111  123579999999987 4 5  998743

>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain

Probab=100.00  E-value=1.8e-74  Score=555.52  Aligned_cols=240  Identities=38%  Similarity=0.665  Sum_probs=226.5

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCCCCeEEEEeccccHhHHHHHHHHHHhCCCeEEe--cCCCCCCCcc
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMI--PQSKPLSAGE   78 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~~~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~i--pq~~pls~Ge   78 (313)
                      ||+|+.. ++||+|||+++++|++++++++++++++.++|+|++|+||.|.++++++.|++.|+++++  ||.+|++|||
T Consensus        82 cl~~~~~-~~pv~yVf~~~~~d~~~~~~~~~~~~~~~~~i~l~~tiq~~~~~~~~~~~L~~~g~~v~i~~~~~~~~~~g~  160 (332)
T TIGR00322        82 PLVPDDV-EIKVLYVPVTINIEYDHIIKTLQDNFPKGRRIATIGTAQFNHKLHSVRDKLLNEGHEVYIGPPQGKPLSRGQ  160 (332)
T ss_pred             CCCcccC-CCCEEEEEccCCCCHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHHHHhcCceEEEecCccCCCCCcc
Confidence            9999632 889999999999999999999999998767899999999999999999999999999665  6789999999


Q ss_pred             ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEEE
Q 042576           79 VLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGI  158 (313)
Q Consensus        79 vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GI  158 (313)
                      ||||+++.+.+ .+.|+++|||+|+||++++||++ .+++|+|||++++++++++++++++++|+++|+||+ +|++|||
T Consensus       161 vLGC~~~~~~~-~~~d~~l~vg~g~FH~~~~~l~~-~~~v~~~DP~s~~~~~~~~~~~~~l~rR~~~I~ka~-~A~~vGI  237 (332)
T TIGR00322       161 VLGCNSEVLRG-EQADAMVFIGDGRFHPLGAAIHT-EKEVFKYDPYSGEFTRIGEDAKQFVKVRALAISKAR-KGKKFGV  237 (332)
T ss_pred             ccCCCcCCCCC-CCCCEEEEEcCCcchHHHHHHHc-CCcEEEECCCCCceeEccccHHHHHHHHHHHHHHHh-cCCEEEE
Confidence            99999998853 24689999999999999999986 899999999999999999999999999999999999 9999999


Q ss_pred             EEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHHHH
Q 042576          159 VLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA  238 (313)
Q Consensus       159 IvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~vA  238 (313)
                      |+||||+||+++++++|+++|+++|||+|+|++|+|||+||+||+ +||+|||+||||+||||+.+|+||||||||++||
T Consensus       238 lvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~-eiD~fV~~aCPr~sidd~~~f~kPvlTP~E~e~a  316 (332)
T TIGR00322       238 VLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMFD-QIDVFVQVACPRIAIDDGYLFNKPLLTPYEFELL  316 (332)
T ss_pred             EEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC-CcCEEEEecCCCceecchhhcCCccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999 8999999999999999999999999999999999


Q ss_pred             hCCCCcccc
Q 042576          239 LGVIPGWWE  247 (313)
Q Consensus       239 L~~~~~~w~  247 (313)
                      ||..  .|+
T Consensus       317 l~~~--~~~  323 (332)
T TIGR00322       317 LKKR--VEK  323 (332)
T ss_pred             hCcc--ccc
Confidence            9874  365

Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.

>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein

Probab=100.00  E-value=1.6e-70  Score=523.48  Aligned_cols=234  Identities=29%  Similarity=0.472  Sum_probs=221.7

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCCCCeEEEEeccccHhHHHHHHHHHHhCCCeEEecCCC--CCCCcc
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQSK--PLSAGE   78 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~~~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~ipq~~--pls~Ge   78 (313)
                      ||++. ++++||+|||++.++|++++++++.++++ .++|+|++|+||.|.++++++.|+++|+++++++.+  |+++||
T Consensus        63 cl~~~-~~~~pv~yV~~~~~~d~~~~~~~~~~~~~-~~~v~l~~tiq~~~~~~~v~~~L~~~g~~v~i~~~~~~~~~~g~  140 (308)
T TIGR03682        63 PLPNV-KPEIPVIFIEARSDVDVEEVIEKALEELK-GRRIGLVTTAQHVHLLEKVKEILEERGIEVVIGKGDGRVTYPGQ  140 (308)
T ss_pred             CCCcc-cCCCCEEEEEecCCcCHHHHHHHHHHHCC-CCeEEEEEcHHhHHHHHHHHHHHHHcCceEEecCCCCCCCCCce
Confidence            78632 46899999999999999999999999997 468999999999999999999999999999999864  999999


Q ss_pred             ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEEE
Q 042576           79 VLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGI  158 (313)
Q Consensus        79 vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GI  158 (313)
                      ||||+++...+. +.|+++|||+|+||++++|| +|.+++|+|||++++++.+++++++++++|+++|+||+ +|++|||
T Consensus       141 vlGC~~~~~~~~-~~d~~~~vg~g~Fh~~~l~l-~~~~~v~~~DP~~~~~~~~~~~~~~~l~~R~~~I~ka~-~A~~vGI  217 (308)
T TIGR03682       141 VLGCNFSAARSV-DADAFLFVGTGLFHPLGLAL-ATNKPVYAADPFSGEVEDIEAEIDKFLRVRYARISKAL-DAKKFGI  217 (308)
T ss_pred             eeCccccCCCCC-CccEEEEEcCCcchHHHHHh-ccCCcEEEECCCCCceEeechhHHHHHHHHHHHHHHHh-hCCeEEE
Confidence            999999988642 46899999999999999999 79999999999999999999999999999999999999 9999999


Q ss_pred             EEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHHHH
Q 042576          159 VLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA  238 (313)
Q Consensus       159 IvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~vA  238 (313)
                      |+||||+||+++++++|+++|+++|||+|+|+||+|||+||+||+  ||+||++||||+||||+.+|+||||||||+++|
T Consensus       218 lvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~--iD~fV~~aCPr~sidd~~~f~kPvlTP~E~~~a  295 (308)
T TIGR03682       218 LVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNLD--FDAYVNTACPRIAIDDYARFKKPVLTPQEFEIV  295 (308)
T ss_pred             EEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcCC--cCEEEEccCCCcccccHhhCCCcccCHHHHHHH
Confidence            999999999999999999999999999999999999999999995  999999999999999999999999999999999


Q ss_pred             hCC
Q 042576          239 LGV  241 (313)
Q Consensus       239 L~~  241 (313)
                      ||.
T Consensus       296 l~~  298 (308)
T TIGR03682       296 LGK  298 (308)
T ss_pred             hCC
Confidence            986

This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.

>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis

Probab=100.00  E-value=6.4e-71  Score=525.71  Aligned_cols=241  Identities=46%  Similarity=0.819  Sum_probs=179.1

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCCCCeEEEEeccccHhHHHHHHHHHHhCCCeEE--ecCCCCCCCcc
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELEKQGFKVM--IPQSKPLSAGE   78 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~~~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~--ipq~~pls~Ge   78 (313)
                      ||+|+ ++++||+|||+++++|++++++.+.+.+++.++|+|++|+||.|.++++++.|+++|+...  .|+.+|+++||
T Consensus        56 cl~~~-~~~ipviyV~~~~~id~~~~~~~~~~~~~~~~~i~l~~~vqy~~~~~~~~~~L~~~g~~~~i~~~~~~~~~~g~  134 (307)
T PF01866_consen   56 CLSPT-KPRIPVIYVFVEINIDVEHLVESLKEEFKKKKKIVLLTDVQYAHALEELKEILREKGFEVVIGIPQNRPLSPGQ  134 (307)
T ss_dssp             --S-----SS-EEEEE--B-S-HHHHHHHTHHHHHT-SEEEEEE-GGGGGGHHHHHHHHHHTT-EEE-----TT-SSTTB
T ss_pred             CCCcc-cccCceEEEeccCCCCHHHHHHHHHHhccCCceEEEEEehhHHHHHHHHHHHHHHhcccccccCCccccCCccc
Confidence            89995 3589999999999999999999999999776889999999999999999999999988754  47889999999


Q ss_pred             ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCccccc--ccChHHHHHHHHHHHHHHhhcCCEE
Q 042576           79 VLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLE--EYDNKGMRETRKRAIEKAMKEARTW  156 (313)
Q Consensus        79 vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e--~~d~~~~l~~R~~~I~kak~~A~~~  156 (313)
                      ||||+++.++...+.++++|||+|+||++++||+ |.+++|+|||++++++.|  .++.++++++|+++|+||+ +|++|
T Consensus       135 vlGc~~~~~~~~~~~~~~l~IG~g~fh~~~l~l~-~~~~v~~~dP~~~~~~~e~~~~~~~~~l~~R~~~i~ka~-~a~~~  212 (307)
T PF01866_consen  135 VLGCTYPSADSLDDDDAILFIGGGRFHLLGLMLS-PGKPVYRYDPYSKTLSVEDISYDIERLLRRRYALIEKAK-DAKTF  212 (307)
T ss_dssp             -BTTB-GGG-S--S-SEEEEESSSSHHHHHHHHH-H-SEEEEE-TT--T--EEE----THHHHHHHHHHHHHHT-T--EE
T ss_pred             ccCCccCcccccccccEEEEEcCCchHHHHHHHh-cCCCEEEeCCCcccceeecccccHHHHHHHHHHHHHHHh-cCCEE
Confidence            9999999886412369999999999999999999 999999999998888888  7799999999999999999 99999


Q ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHH
Q 042576          157 GIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAE  236 (313)
Q Consensus       157 GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~  236 (313)
                      |||+||||+|+|++++++|+++|+++|||+|+|+|++|||+||+||+ +||+||++||||+||||+++|+||||||||++
T Consensus       213 GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~-eid~fV~~aCPr~~idd~~~f~kPvltP~E~~  291 (307)
T PF01866_consen  213 GIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFP-EIDAFVQIACPRLSIDDSKDFYKPVLTPYELE  291 (307)
T ss_dssp             EEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE-S-THHHHT--S--SS-EE-HHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCc-ccCEEEEecCCCcccCchhhcCCcccCHHHHH
Confidence            99999999999999999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             HHhCCCCcccc
Q 042576          237 IALGVIPGWWE  247 (313)
Q Consensus       237 vAL~~~~~~w~  247 (313)
                      |||+.  .||+
T Consensus       292 ~al~~--~~~~  300 (307)
T PF01866_consen  292 VALNE--REWG  300 (307)
T ss_dssp             HHTTS---S--
T ss_pred             HHhCC--cccC
Confidence            99987  4465

Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.

>TIGR00272 DPH2 diphthamide biosynthesis protein 2

Probab=100.00  E-value=1.4e-62  Score=493.46  Aligned_cols=245  Identities=22%  Similarity=0.389  Sum_probs=219.1

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCC-CCeEEEEeccccHhHHHHHHHHHHhC------CCeEEecCCCC
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSD-PGKLILAGTIQFASAIRAAKPELEKQ------GFKVMIPQSKP   73 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~-~~~i~Lv~tiQf~~~l~~~~~~L~~~------g~~v~ipq~~p   73 (313)
                      ||+|+  +++||+|||+++++|++++++++++++++ .++|+|++|+||.|+++++++.|++.      ..++..||.+|
T Consensus       117 CLsp~--~~lPviYVf~~~~~d~~~~~~~~~~~~~~~~~kV~l~~dvqy~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~  194 (496)
T TIGR00272       117 CLSAI--QNLPVVYVFGTPPIDLALVVENFQRAFPDLSSKICLMADAPFSKHQSQLYNILKEVLPGDLHYTNIIYPQVNT  194 (496)
T ss_pred             CCCCC--CCCCEEEEeccCCCCHHHHHHHHHHhccccCCeEEEEEchhHHHHHHHHHHHHHhhccccccccceecccccc
Confidence            99996  58999999999999999999999999886 55799999999999999999999852      24578899998


Q ss_pred             CCCcc---ccCCCCCCCCCCC-CCCeEEEecCCcc-cHHHHHhh-CCC-ceEEEeCCCCCcccccccC-hHHHHHHHHHH
Q 042576           74 LSAGE---VLGCTAPKIPARE-SDFNLVFIADGRF-HLEAFMIS-NPG-IKTFRYDPYLGKLFLEEYD-NKGMRETRKRA  145 (313)
Q Consensus        74 ls~Ge---vLGCt~~~~~~~~-~~d~iv~igdGrF-Hle~~mi~-np~-~~~y~yDPys~~~~~e~~d-~~~~l~~R~~~  145 (313)
                      ++.|+   ||||+++.+.+.. +...++|||+|+| |+.+++|+ +|. +++|+|||++++++.+.++ +.++||+||++
T Consensus       195 ~~~~~~~~vlGc~~~~~~~~~~~~~~~l~IG~~~~g~f~~l~l~~~~~~~~v~~~dP~~~~~~~~~~~~~~~~L~rRy~~  274 (496)
T TIGR00272       195 SAVEEKFVTIGRTFHVPEDVDQQEKNLVLFGQHSSEDLHLIHLTTYQDLSTVFQFVPIFDPILPESVTGPFPSLRRRYKL  274 (496)
T ss_pred             ccCCCCceecCccccCccccccccceEEEEcCCCchhhhHhhhhcCCCCCceEEECCCCCcceecccchHHHHHHHHHHH
Confidence            88765   9999998774221 1235899999777 66667654 545 5699999999999999877 99999999999


Q ss_pred             HHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCC
Q 042576          146 IEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAF  225 (313)
Q Consensus       146 I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f  225 (313)
                      |+||| +|++|||||||||+|+|++++++|+++|+++|||+|+|+||+|||+||+||+ +||+||+|||||+||||+++|
T Consensus       275 I~kA~-~A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF~-eID~fV~vaCPr~sidd~~~F  352 (496)
T TIGR00272       275 VHVAR-DAGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANFE-DIDIFVLLGCSQSGIIDSNEF  352 (496)
T ss_pred             HHHHh-cCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC-CCCEEEEccCCCcccccHhhC
Confidence            99999 9999999999999999999999999999999999999999999999999998 899999999999999999999


Q ss_pred             CCcccCHHHHHHHhCCCCcccccc
Q 042576          226 TKPLLTPFEAEIALGVIPGWWERD  249 (313)
Q Consensus       226 ~kPvLTPyE~~vAL~~~~~~w~~~  249 (313)
                      +||||||||++|||+....|+.+.
T Consensus       353 ~KPVlTP~ElelAL~~~~~w~~~~  376 (496)
T TIGR00272       353 YRPIVTPFELNLALSEEVTWVVDF  376 (496)
T ss_pred             CCceecHHHHHHHhCCcccccchH
Confidence            999999999999999876676553

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.

>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-62  Score=471.22  Aligned_cols=256  Identities=34%  Similarity=0.564  Sum_probs=238.5

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCCC-CeEEEEeccccHhHHHHHHHHHHhCCCeEEe--cCCCCCCCc
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDP-GKLILAGTIQFASAIRAAKPELEKQGFKVMI--PQSKPLSAG   77 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~~-~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~i--pq~~pls~G   77 (313)
                      ||.|. ...+||+|||...++|+++.++....+++.. +||+|++|+||.+.++.+++.|+..|+.+++  ||.+++++|
T Consensus        86 ~l~~~-~~~~~Viyv~~~~~~d~~~~~~~~~~~l~~~~r~I~li~t~q~~~~l~~~k~~L~~~g~~v~i~~~~~r~~~~g  164 (347)
T COG1736          86 CLPPV-EYELPVIYVFAFSRVDVDLVVLEATRELKKGSRRIGLITTAQHVHLLEEVKEILEGRGYEVVIGRGQTRPAYPG  164 (347)
T ss_pred             cCCCc-CCCCcEEEeecccccchhHHHHHhhHhhccCCceEEEEecccchhHHHHHHHHhhcCCeEEEEeCCCCcccCcc
Confidence            67774 5689999999999999999999998888864 4699999999999999999999999998776  677899999


Q ss_pred             cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEE
Q 042576           78 EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWG  157 (313)
Q Consensus        78 evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~G  157 (313)
                      ||||||++.+++ .+.|+++|||+|+||+++++|. |.+++|+||||+++++.++.++++++++|+++|.+|+ +|++||
T Consensus       165 qVLGC~~~~~~~-~~~d~~l~vg~G~FH~lg~~i~-~~~~v~~~dP~s~~~~~~~~~~~~~l~~R~~~i~~a~-~a~~~g  241 (347)
T COG1736         165 QVLGCNFSVLEG-VDADAVLYVGSGRFHPLGLAIR-TEKPVFAIDPYSGKVREEDPEADRFLRKRYAAISKAL-DAKSFG  241 (347)
T ss_pred             eeeccccccCCc-cccceEEEEcCCccChhhcccc-cCCcEEEEcCCCCceeecchhhhHHHHHHHHHHHHHh-cCCeEE
Confidence            999999999975 3479999999999999999999 9999999999999999999999999999999999999 999999


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHHH
Q 042576          158 IVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI  237 (313)
Q Consensus       158 IIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~v  237 (313)
                      ||+||+++|+++++++.|.++++++||++|+|+++++||+||+||. +||+||++||||++|||+..|.||||||||+++
T Consensus       242 iiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~-~iD~~v~taCPRi~iDd~~~f~kPlLTP~E~~~  320 (347)
T COG1736         242 IIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFD-DIDAFVNTACPRIPIDDGDRFKKPLLTPYEFEI  320 (347)
T ss_pred             EEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhccc-ceeEEEEecCCCcccchHhhhCCcccChHHHHH
Confidence            9999999999999999999999999999999999999999999998 799999999999999999999999999999999


Q ss_pred             HhCCCCcccccchhhhhhhhhcccCCCCCCCCCCCCCCCCCCcceeccCC-CCCcc
Q 042576          238 ALGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYAQDG-GEWNS  292 (313)
Q Consensus       238 AL~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ypmd~y~~~~-g~w~~  292 (313)
                      ||+  ..||+                             .|+||++..++ |+|+.
T Consensus       321 ~l~--~~~~~-----------------------------~y~~Dei~~~~~~~~~~  345 (347)
T COG1736         321 ALG--WRSDE-----------------------------RYAFDEIVGNDGGPDEY  345 (347)
T ss_pred             hhc--cCccc-----------------------------ccccceeecCCCCCCCc
Confidence            998  24555                             59999999775 77763

>COG1609 PurR Transcriptional regulators [Transcription]

Probab=90.02  E-value=8.3  Score=37.23  Aligned_cols=151  Identities=13%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             eEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCC
Q 042576           39 KLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNP  114 (313)
Q Consensus        39 ~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np  114 (313)
                      .|+++..    ..|...++.+.+.++++|+.+++..... ++.+.--+......  ..+|.+|+.+...-+..--++...
T Consensus        60 ~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~-~~~~e~~~~~~l~~--~~vdGiIi~~~~~~~~~~~~l~~~  136 (333)
T COG1609          60 TIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDD-DPEKEREYLETLLQ--KRVDGLILLGERPNDSLLELLAAA  136 (333)
T ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHH--cCCCEEEEecCCCCHHHHHHHHhc
Confidence            4776643    6788889999999999999987632211 00000000000001  248999999832222333344445


Q ss_pred             CceEEEeCCCCC--cccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE--EEE
Q 042576          115 GIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY--VVI  189 (313)
Q Consensus       115 ~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~--y~i  189 (313)
                      ..|++.+|-...  .+.....|....  -| .+++... ..-+++|+|-|.........-.+-.++-++++|.+.  ..+
T Consensus       137 ~~P~V~i~~~~~~~~~~~V~~Dn~~~--~~-~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i  213 (333)
T COG1609         137 GIPVVVIDRSPPGLGVPSVGIDNFAG--AY-LATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWI  213 (333)
T ss_pred             CCCEEEEeCCCccCCCCEEEEChHHH--HH-HHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceE
Confidence            788888885433  333333443322  22 2333333 035899999999855555666777788889999873  555


Q ss_pred             EeCCCC
Q 042576          190 MMSEIS  195 (313)
Q Consensus       190 ~v~ein  195 (313)
                      .-++.+
T Consensus       214 ~~~~~~  219 (333)
T COG1609         214 VEGDFS  219 (333)
T ss_pred             EecCCC
Confidence            554444

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=85.72  E-value=29  Score=32.34  Aligned_cols=155  Identities=15%  Similarity=0.183  Sum_probs=81.7

Q ss_pred             cHhHHHHHHHHHHhCCCeEEecCCCCCCCc-cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCC
Q 042576           48 FASAIRAAKPELEKQGFKVMIPQSKPLSAG-EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLG  126 (313)
Q Consensus        48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~G-evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~  126 (313)
                      |...+..+.+.++++||.+++-....-..- +.+-    .+.. ..+|++|+.+...-...-..+...+.|++..|-+..
T Consensus        16 f~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~----~l~~-~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~~~~   90 (279)
T PF00532_consen   16 FAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIE----LLLQ-RRVDGIILASSENDDEELRRLIKSGIPVVLIDRYID   90 (279)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHH----HHHH-TTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS-SC
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHH----HHHh-cCCCEEEEecccCChHHHHHHHHcCCCEEEEEeccC
Confidence            777788899999999999765221100000 1110    0000 247999888543321221223333789999997733


Q ss_pred             c---ccccccChHHH-HHHHHHHHHHHhhcCCE-EEEEEeCCCCCCcHHHHHHHHHHHHHcCC--cEEEEEeCCCCHH--
Q 042576          127 K---LFLEEYDNKGM-RETRKRAIEKAMKEART-WGIVLGTLGRQGNPRILERLQKRMEKKGF--DYVVIMMSEISPA--  197 (313)
Q Consensus       127 ~---~~~e~~d~~~~-l~~R~~~I~kak~~A~~-~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk--k~y~i~v~einp~--  197 (313)
                      .   +.....|..+. ...=.++++  + .-++ |++|-|.........-++-.++-++++|.  +-..+.-+.-+.+  
T Consensus        91 ~~~~~~~V~~D~~~a~~~a~~~Li~--~-Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g  167 (279)
T PF00532_consen   91 NPEGVPSVYIDNYEAGYEATEYLIK--K-GHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESG  167 (279)
T ss_dssp             TTCTSCEEEEEHHHHHHHHHHHHHH--T-TCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHH
T ss_pred             CcccCCEEEEcchHHHHHHHHHHHh--c-ccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHH
Confidence            2   22222332221 111122222  2 5578 99999987665444445556888999998  3444455555532  


Q ss_pred             ------HHhcCcCCccEEEE
Q 042576          198 ------RVALFEDSVDAWIQ  211 (313)
Q Consensus       198 ------KLanf~~~ID~fV~  211 (313)
                            -|++-+ ++|+++-
T Consensus       168 ~~~~~~ll~~~p-~idai~~  186 (279)
T PF00532_consen  168 YEAARELLESHP-DIDAIFC  186 (279)
T ss_dssp             HHHHHHHHHTST-T-SEEEE
T ss_pred             HHHHHHHHhhCC-CCEEEEE
Confidence                  233445 7887653

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>PRK09492 treR trehalose repressor; Provisional

Probab=82.55  E-value=5  Score=37.20  Aligned_cols=78  Identities=17%  Similarity=0.369  Sum_probs=51.0

Q ss_pred             cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcCc-CCccEEEEecCCCccccccCCCC
Q 042576          152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALFE-DSVDAWIQIACPRLSIDWGDAFT  226 (313)
Q Consensus       152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf~-~~ID~fV~iaCPrlsid~~~~f~  226 (313)
                      ..++||+|+.++.-.....+++.+.+.++++|....++. +.-++++.    ..+. ..+|.+|+.++.....+.-..+.
T Consensus        61 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~l~~~~  139 (315)
T PRK09492         61 SDKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPIIME-SQFSPEKVNEHLGVLKRRNVDGVILFGFTGITEEMLAPWQ  139 (315)
T ss_pred             CCCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEEEEe-cCCChHHHHHHHHHHHhcCCCEEEEeCCCcccHHHHHhcC
Confidence            457899999988777888999999999999997764433 33344332    2221 14999999875322233333445


Q ss_pred             Cccc
Q 042576          227 KPLL  230 (313)
Q Consensus       227 kPvL  230 (313)
                      +|++
T Consensus       140 ~pvv  143 (315)
T PRK09492        140 DKLV  143 (315)
T ss_pred             CCEE
Confidence            5654

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=81.92  E-value=34  Score=29.76  Aligned_cols=130  Identities=16%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             cHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHH-HHHhhCCCceEEEeCCCCC
Q 042576           48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLE-AFMISNPGIKTFRYDPYLG  126 (313)
Q Consensus        48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle-~~mi~np~~~~y~yDPys~  126 (313)
                      +......+++.+++.|+++.+-.... .+.+..-+-...+.  ..+|++|..+.....+. --.+.+...|++.+|-...
T Consensus        14 ~~~~~~g~~~~~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~--~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~   90 (264)
T cd01537          14 FAQVLKGIEEAAKAAGYQVLLANSQN-DAEKQLSALENLIA--RGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIP   90 (264)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHHH--cCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCC
Confidence            44455667777777777755421110 00000000000011  13677766543222222 1223445677777764432


Q ss_pred             ---cccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcC
Q 042576          127 ---KLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTLGRQGNPRILERLQKRMEKKG  183 (313)
Q Consensus       127 ---~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~G  183 (313)
                         .+..-..|...+-   ..+.+.++ ...+++|+|.+...........+-+++.+++.|
T Consensus        91 ~~~~~~~v~~d~~~~~---~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  148 (264)
T cd01537          91 DGDRVPSVGSDNEQAG---YLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG  148 (264)
T ss_pred             CCcccceEecCcHHHH---HHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence               2222223333222   12222322 036799999887664455566788888888887

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3lzc_A	378	Crystal Structure Of Dph2 From Pyrococcus Horikoshi		2e-14

>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii Length = 378

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 10  IPCLYVFVEIKIDVNRLIDTIKVNYSDPGKL----ILAGTIQFASAIRAAKPELEKQGFK 65
           +P ++V    ++ V   ++ +K N  +  KL    I+  T Q    ++ AK  LE +GF+
Sbjct: 124 VPTIFVPAFARVSV---VEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGFE 180
Query: 66  VMIPQ--SKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDP 123
           V I +  S+    G+VLGC       R     ++FI  G FH     ++    K    DP
Sbjct: 181 VSIGRGDSRISWPGQVLGCNYSVAKVRGE--GILFIGSGIFHPLGLAVATRK-KVLAIDP 237
Query: 124 YLGKLFLEEYDNKGMRETRKR--AIEKAMKEARTWGIVLGTLGRQGNPRILE--RLQKRM 179
           Y       + +    R  RKR   I KAM +A+ +G+++    ++G  R+ E  R+ K +
Sbjct: 238 YTKAFSWIDPE----RFIRKRWAQIAKAM-DAKKFGVIVSI--KKGQLRLAEAKRIVKLL 290
Query: 180 EKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIAL 239
           +K G +  +I+M++++  ++  F    +A++ +ACPR+ +D   A+ KP+LTP E EI L
Sbjct: 291 KKHGREARLIVMNDVNYHKLEGF--PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILL 348
Query: 240 GV 241
           G+
Sbjct: 349 GL 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3lzd_A	378	DPH2; diphthamide biosynthesis, radical SAM enzyme	2e-67

>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Length = 378

 Score =  214 bits (545), Expect = 2e-67
 Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 28/286 (9%)

Query: 1   CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSDPGKLILAGTIQFASAIRAAKPELE 60
            +          +  F  + +    L + I        K+I+  T Q    ++ AK  LE
Sbjct: 117 YMKLPLEVPTIFVPAFARVSVVEA-LKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLE 175

Query: 61  KQGFKVMIPQ--SKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKT 118
            +GF+V I +  S+    G+VLGC      A+     ++FI  G FH     ++    K 
Sbjct: 176 SEGFEVSIGRGDSRISWPGQVLGCNYS--VAKVRGEGILFIGSGIFHPLGLAVATR-KKV 232

Query: 119 FRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKR 178
              DPY         D +     R   I KA  +A+ +G+++     Q      +R+ K 
Sbjct: 233 LAIDPYTKAF--SWIDPERFIRKRWAQIAKA-MDAKKFGVIVSIKKGQLRLAEAKRIVKL 289

Query: 179 MEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEIA 238
           ++K G +  +I+M++++  ++  F    +A++ +ACPR+ +D   A+ KP+LTP E EI 
Sbjct: 290 LKKHGREARLIVMNDVNYHKLEGFP--FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEIL 347

Query: 239 LGVIPGWWERDKEREREREESKSCGGCGNEDKNCDGDGDYPMDYYA 284
           LG+    +E D+     RE  +                 + +  ++
Sbjct: 348 LGLRE-EYEFDEILGGPRESDEP----------------FGISIHS 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3lzd_A	378	DPH2; diphthamide biosynthesis, radical SAM enzyme	100.0
3kke_A	303	LACI family transcriptional regulator; structural	87.76
3gv0_A	288	Transcriptional regulator, LACI family; transcript	87.19
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	86.97
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	86.15
3cs3_A	277	Sugar-binding transcriptional regulator, LACI FAM;	85.97
3g85_A	289	Transcriptional regulator (LACI family); transcrip	84.58
1byk_A	255	Protein (trehalose operon repressor); LACI family,	84.12
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	82.59
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	82.28
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	82.13
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	81.64
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	81.44
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	80.72
3k4h_A	292	Putative transcriptional regulator; structural gen	80.04

>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A

Probab=100.00  E-value=2e-73  Score=553.56  Aligned_cols=231  Identities=27%  Similarity=0.422  Sum_probs=220.7

Q ss_pred             CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCC-CCeEEEEeccccHhHHHHHHHHHHhCCCeEEecCC--CCCCCc
Q 042576            1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSD-PGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQS--KPLSAG   77 (313)
Q Consensus         1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~-~~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~ipq~--~pls~G   77 (313)
                      ||+|  ++++||+|||+++++|++++++++.++|++ .++|+|++|+||.|+++.+++.|++.|++++++|.  +++++|
T Consensus       117 CL~~--~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~v~i~~~~~~~~~~g  194 (378)
T 3lzd_A          117 YMKL--PLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGFEVSIGRGDSRISWPG  194 (378)
T ss_dssp             CCSC--CCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGGHHHHHHHHHHTTCEEECCCCCTTCSSTT
T ss_pred             cCCc--ccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHHHHHHHHHHHHcCCeEEecCCCCCCCCCC
Confidence            9998  479999999999999999999999999975 57899999999999999999999999999999886  789999


Q ss_pred             cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEE
Q 042576           78 EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWG  157 (313)
Q Consensus        78 evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~G  157 (313)
                      |||||+++.++.  ++|+++|||+|+||++++||+ |.+++|+||||+++++++  ++++|+++|+++|+||+ +|++||
T Consensus       195 qvLGC~~~~~~~--~~d~~lyvG~g~FH~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~-dA~~~G  268 (378)
T 3lzd_A          195 QVLGCNYSVAKV--RGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQIAKAM-DAKKFG  268 (378)
T ss_dssp             BCBTTBCGGGCS--SCSEEEEESSSSHHHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred             ccccccCCCccc--CCceEEEEcCCchhHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHHHHHh-cCCEEE
Confidence            999999998763  379999999999999999999 899999999999999875  69999999999999999 999999


Q ss_pred             EEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHHH
Q 042576          158 IVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI  237 (313)
Q Consensus       158 IIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~v  237 (313)
                      ||+||||+|||++++++|+++|+++|||+|+|+||||||+||+||+  ||+||||||||+||||+++|+||||||||++|
T Consensus       269 IIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~--iD~fV~vaCPrlsidd~~~F~KPvLTPyE~ev  346 (378)
T 3lzd_A          269 VIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFP--FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEI  346 (378)
T ss_dssp             EEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTSC--CSEEEECSCTHHHHSCCSCCSSCEECHHHHHH
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC--CCEEEEecCCCccccchhhCCCcccCHHHHHH
Confidence            9999999999999999999999999999999999999999999995  99999999999999999999999999999999


Q ss_pred             HhCC
Q 042576          238 ALGV  241 (313)
Q Consensus       238 AL~~  241 (313)
                      |||.
T Consensus       347 AL~~  350 (378)
T 3lzd_A          347 LLGL  350 (378)
T ss_dssp             HTTS
T ss_pred             HhCC
Confidence            9986

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=87.76  E-value=9.7  Score=33.58  Aligned_cols=164  Identities=10%  Similarity=0.067  Sum_probs=90.1

Q ss_pred             CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccH-HHHH
Q 042576           38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHL-EAFM  110 (313)
Q Consensus        38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~m  110 (313)
                      ..|+++. ++   -|...++.+.+.+++.|+++++-....-...|  .+.-   ...  ..+|++|+.+...-.. .--.
T Consensus        16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiI~~~~~~~~~~~~~~   90 (303)
T 3kke_A           16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRL---VSE--GRVDGVLLQRREDFDDDMLAA   90 (303)
T ss_dssp             -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHH---HHS--CSSSEEEECCCTTCCHHHHHH
T ss_pred             CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHH---HHh--CCCcEEEEecCCCCcHHHHHH
Confidence            3577663 22   35666788999999999997763221100000  0000   001  2379998876443232 1223


Q ss_pred             hhCCCceEEEeCCCCC-cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE-
Q 042576          111 ISNPGIKTFRYDPYLG-KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV-  187 (313)
Q Consensus       111 i~np~~~~y~yDPys~-~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y-  187 (313)
                      +.. .+|++.+|-... .+.....|....-+. =.++++  + ..+++|+|.|..+......-.+-.++-++++|.+.- 
T Consensus        91 l~~-~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~  166 (303)
T 3kke_A           91 VLE-GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLIT--L-GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEA  166 (303)
T ss_dssp             HHT-TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHH--T-TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred             HhC-CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHH--C-CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCc
Confidence            445 899999985543 233333443322111 012222  4 678999999886655455556667778888887643 


Q ss_pred             -EEEeCCCCHHH-------------HhcCcCCccEEEE
Q 042576          188 -VIMMSEISPAR-------------VALFEDSVDAWIQ  211 (313)
Q Consensus       188 -~i~v~einp~K-------------Lanf~~~ID~fV~  211 (313)
                       .+..+..+.+.             |..-+ ++|+++-
T Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~ai~~  203 (303)
T 3kke_A          167 AWVVDAGWEADAGSAALNTLYRGANLGKPD-GPTAVVV  203 (303)
T ss_dssp             GGEEECCSSHHHHHHHHHHHHHHHCTTSTT-SCSEEEE
T ss_pred             ceEEecCCChHHHHHHHHHhcchhhhcCCC-CCcEEEE
Confidence             24456665543             33334 6888875

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=87.19  E-value=14  Score=32.11  Aligned_cols=164  Identities=7%  Similarity=0.007  Sum_probs=87.0

Q ss_pred             CeEEEEec------cccHhHHHHHHHHHHhCCCeEEecCCCC--CCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH
Q 042576           38 GKLILAGT------IQFASAIRAAKPELEKQGFKVMIPQSKP--LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF  109 (313)
Q Consensus        38 ~~i~Lv~t------iQf~~~l~~~~~~L~~~g~~v~ipq~~p--ls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~  109 (313)
                      ..|+++..      --|...++.+.+.+++.|+++++-....  -..-+++-    .+.. ..+|++|+.+...-...--
T Consensus         9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~~~~   83 (288)
T 3gv0_A            9 NVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRY----ILET-GSADGVIISKIEPNDPRVR   83 (288)
T ss_dssp             CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHH----HHHH-TCCSEEEEESCCTTCHHHH
T ss_pred             CEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHH----HHHc-CCccEEEEecCCCCcHHHH
Confidence            45776643      2356667778889999999977632211  00000100    0000 2479998876432221111


Q ss_pred             HhhCCCceEEEeCCCCCc--ccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576          110 MISNPGIKTFRYDPYLGK--LFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD  185 (313)
Q Consensus       110 mi~np~~~~y~yDPys~~--~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk  185 (313)
                      .+....+|++.+|-....  +.....|....  -|. +.+.  .+ ..+++|+|.|..+......-.+-.++.++++|.+
T Consensus        84 ~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~--g~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~  159 (288)
T 3gv0_A           84 FMTERNMPFVTHGRSDMGIEHAFHDFDNEAY--AYE-AVERLAQC-GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT  159 (288)
T ss_dssp             HHHHTTCCEEEESCCCSSCCCEEEEECHHHH--HHH-HHHHHHHT-TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHhhCCCCEEEECCcCCCCCCcEEEeCcHHH--HHH-HHHHHHHC-CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCC
Confidence            233357899988865322  22223343222  121 1111  23 6789999998866555555566677888888876


Q ss_pred             EEEE--EeCCCCHH----HH----hcCcCCccEEEE
Q 042576          186 YVVI--MMSEISPA----RV----ALFEDSVDAWIQ  211 (313)
Q Consensus       186 ~y~i--~v~einp~----KL----anf~~~ID~fV~  211 (313)
                      .-..  ..++-+.+    .+    +..+ ++|+++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~  194 (288)
T 3gv0_A          160 EFPIDAVTIETPLEKIRDFGQRLMQSSD-RPDGIVS  194 (288)
T ss_dssp             ECCCCSCCTTSCHHHHHHHHHHHTTSSS-CCSEEEE
T ss_pred             cchhheeccccchHHHHHHHHHHHhCCC-CCcEEEE
Confidence            5432  23444442    22    2234 5888774

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=86.97  E-value=15  Score=32.15  Aligned_cols=151  Identities=11%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             CeEEEEe---------ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccH
Q 042576           38 GKLILAG---------TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHL  106 (313)
Q Consensus        38 ~~i~Lv~---------tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHl  106 (313)
                      ..|+++.         +--|...++.+.+.+++.|+++++-....-...  +.+-    .+.. ..+|++|+.+...-..
T Consensus         8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdGiI~~~~~~~~~   82 (295)
T 3hcw_A            8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYK----MIKQ-RMVDAFILLYSKENDP   82 (295)
T ss_dssp             CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHH----HHHT-TCCSEEEESCCCTTCH
T ss_pred             cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHH----HHHh-CCcCEEEEcCcccChH
Confidence            4577775         224556678889999999999776322100000  0000    0000 2479988875432111


Q ss_pred             HHHHhhCCCceEEEeCCCCCc----ccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q 042576          107 EAFMISNPGIKTFRYDPYLGK----LFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEK  181 (313)
Q Consensus       107 e~~mi~np~~~~y~yDPys~~----~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~  181 (313)
                      .--.+....+|++.+|-....    +.....|....-+. =.++++  + ..+++|+|.|..+......-.+-.++-+++
T Consensus        83 ~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~  159 (295)
T 3hcw_A           83 IKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIE--Q-GVDELIFITEKGNFEVSKDRIQGFETVASQ  159 (295)
T ss_dssp             HHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHH--H-CCSEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHH--c-CCccEEEEcCCccchhHHHHHHHHHHHHHH
Confidence            111233457899988854332    22222343222111 112222  4 678999999886654444556667778889


Q ss_pred             cCCcEEEEEeCCCCHH
Q 042576          182 KGFDYVVIMMSEISPA  197 (313)
Q Consensus       182 ~Gkk~y~i~v~einp~  197 (313)
                      +|.+.. +..+..+.+
T Consensus       160 ~g~~~~-~~~~~~~~~  174 (295)
T 3hcw_A          160 FNLDYQ-IIETSNERE  174 (295)
T ss_dssp             TTCEEE-EEEECSCHH
T ss_pred             cCCCee-EEeccCCHH
Confidence            998876 445566654

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=86.15  E-value=9  Score=33.62  Aligned_cols=168  Identities=12%  Similarity=0.072  Sum_probs=88.0

Q ss_pred             eEEEEecc----ccHhHHHHHHHHHHhCCCeEEecCCCCC-CCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHH-Hh
Q 042576           39 KLILAGTI----QFASAIRAAKPELEKQGFKVMIPQSKPL-SAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAF-MI  111 (313)
Q Consensus        39 ~i~Lv~ti----Qf~~~l~~~~~~L~~~g~~v~ipq~~pl-s~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~-mi  111 (313)
                      +|+++..-    -|...++.+.+.+++.|+++.+-..... .+.+-...-...+.  ..+|++|+.+...-. ...+ .+
T Consensus         5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~~~~~~~~~~   82 (297)
T 3rot_A            5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDTAFSKSLQRA   82 (297)
T ss_dssp             EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSSTTHHHHHHH
T ss_pred             EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHHHHHHHHHHH
Confidence            46655322    2555567788888888998765321100 00000000000001  237888876532211 1111 23


Q ss_pred             hCCCceEEEeCCCCCc------ccccccChHHHHH-HHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576          112 SNPGIKTFRYDPYLGK------LFLEEYDNKGMRE-TRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF  184 (313)
Q Consensus       112 ~np~~~~y~yDPys~~------~~~e~~d~~~~l~-~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk  184 (313)
                      ...++|++.+|-....      +.....|....-+ .=.+++++.. +.+++++|.|..+......-.+-.++-++++|.
T Consensus        83 ~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~-~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~  161 (297)
T 3rot_A           83 NKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTP-SAKRALVLNPQPGHIGLEKRAYGIKTILQDKGI  161 (297)
T ss_dssp             HHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCT-TCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcC-CCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCC
Confidence            3347889888854332      2223344332211 1122333333 378999999887665555666777888899998


Q ss_pred             cEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576          185 DYVVIMMSEISPAR--------VALFEDSVDAWIQ  211 (313)
Q Consensus       185 k~y~i~v~einp~K--------Lanf~~~ID~fV~  211 (313)
                      +...+. +.-+++.        |...+ ++|+++-
T Consensus       162 ~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~ai~~  194 (297)
T 3rot_A          162 FFEELD-VGTDPNQVQSRVKSYFKIHP-ETNIIFC  194 (297)
T ss_dssp             EEEEEE-CCSCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred             eEEEee-cCCChHHHHHHHHHHHHhCC-CCCEEEE
Confidence            876655 3334332        44445 6888775

>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}

Probab=85.97  E-value=16  Score=31.50  Aligned_cols=158  Identities=8%  Similarity=0.026  Sum_probs=85.9

Q ss_pred             CeEEEEe----ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-Hhh
Q 042576           38 GKLILAG----TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MIS  112 (313)
Q Consensus        38 ~~i~Lv~----tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi~  112 (313)
                      .+|+++.    +--|...++.+.+.+++.|+++++-....-...| ..     .    .+|++|+.+... .-..+ .+.
T Consensus         9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~~-----~----~vdgiI~~~~~~-~~~~~~~l~   77 (277)
T 3cs3_A            9 NIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFI-PE-----K----MVDGAIILDWTF-PTKEIEKFA   77 (277)
T ss_dssp             CEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCC-CT-----T----TCSEEEEECTTS-CHHHHHHHH
T ss_pred             cEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHH-hh-----c----cccEEEEecCCC-CHHHHHHHH
Confidence            4577764    2235566788889999999997652211100001 00     0    378988776432 21222 233


Q ss_pred             CCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEE
Q 042576          113 NPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVI  189 (313)
Q Consensus       113 np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i  189 (313)
                      ...+|++.+|-...  .+.....|..+.-+. =..+++  + ..+++|+|.|..+......-.+-.++-++++|.+.. +
T Consensus        78 ~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~  153 (277)
T 3cs3_A           78 ERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVN--V-GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE-I  153 (277)
T ss_dssp             HTTCEEEESSSCCCSTTEEEEEECHHHHHHHHHHHHHH--T-TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE-E
T ss_pred             hcCCCEEEEecCCCCCCCCEEEeCcHHHHHHHHHHHHH--c-CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee-E
Confidence            45789999985432  222233443322111 011222  3 568999998876543334445556677888998766 5


Q ss_pred             EeCCCCHHH--------Hhc-CcCCccEEEE
Q 042576          190 MMSEISPAR--------VAL-FEDSVDAWIQ  211 (313)
Q Consensus       190 ~v~einp~K--------Lan-f~~~ID~fV~  211 (313)
                      ..+..+++.        |.. .+ ++|+++.
T Consensus       154 ~~~~~~~~~~~~~~~~~l~~~~~-~~~ai~~  183 (277)
T 3cs3_A          154 IQGDFTEPSGYAAAKKILSQPQT-EPVDVFA  183 (277)
T ss_dssp             EECCSSHHHHHHHHHHHTTSCCC-SSEEEEE
T ss_pred             EeCCCChhHHHHHHHHHHhcCCC-CCcEEEE
Confidence            556666542        222 34 5888764

>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}

Probab=84.58  E-value=9.2  Score=33.20  Aligned_cols=165  Identities=15%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             CeEEEEec--c---ccHhHHHHHHHHHHhCCCeEEecC--CCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHH
Q 042576           38 GKLILAGT--I---QFASAIRAAKPELEKQGFKVMIPQ--SKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFM  110 (313)
Q Consensus        38 ~~i~Lv~t--i---Qf~~~l~~~~~~L~~~g~~v~ipq--~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~m  110 (313)
                      ..|+++..  +   -|...++.+.+.+++.|+++++-.  ..+...-+.+.    .+.. ..+|++|+.+...-...-..
T Consensus        12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~~~~~   86 (289)
T 3g85_A           12 PTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKG----ISKE-NSFDAAIIANISNYDLEYLN   86 (289)
T ss_dssp             CEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGG----GSTT-TCCSEEEESSCCHHHHHHHH
T ss_pred             ceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHH----HHhc-cCCCEEEEecCCcccHHHHH
Confidence            45886653  2   345557778889999999865421  11111111110    1111 24799988765432222233


Q ss_pred             hhCCCceEEEeCCCCCcccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE--
Q 042576          111 ISNPGIKTFRYDPYLGKLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV--  187 (313)
Q Consensus       111 i~np~~~~y~yDPys~~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y--  187 (313)
                      .....+|++.+|.....+.....|....-+.= .+++  .+ ..+++|+|.|..+......-.+-.++-++++|.+.-  
T Consensus        87 ~~~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~--~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~  163 (289)
T 3g85_A           87 KASLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFA--KK-RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISEN  163 (289)
T ss_dssp             HCCCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHH--HT-TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGG
T ss_pred             hccCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHH--Hc-CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChh
Confidence            34457899999976554444444543322111 1111  24 678999999986655555566777788888887642  


Q ss_pred             EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576          188 VIMMSEISPAR--------VALFEDSVDAWIQ  211 (313)
Q Consensus       188 ~i~v~einp~K--------Lanf~~~ID~fV~  211 (313)
                      .+..+..+.+.        |...+ ++|+++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~  194 (289)
T 3g85_A          164 HIIAAENSIHGGVDAAKKLMKLKN-TPKALFC  194 (289)
T ss_dssp             GEEECCSSHHHHHHHHHHHTTSSS-CCSEEEE
T ss_pred             heeccCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence            23345555432        22334 6888874

>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1

Probab=84.12  E-value=3  Score=35.79  Aligned_cols=78  Identities=12%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCCCccccccCCCCC
Q 042576          153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACPRLSIDWGDAFTK  227 (313)
Q Consensus       153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCPrlsid~~~~f~k  227 (313)
                      .++||+|+..+.-..+..+++.+++.++++|....++. ..-++++    +..+ ...+|.+|+.++.......-.....
T Consensus         2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~   80 (255)
T 1byk_A            2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEe-CCCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence            47899999988877788999999999999998765554 3445543    2233 1259999998875433332233345


Q ss_pred             cccC
Q 042576          228 PLLT  231 (313)
Q Consensus       228 PvLT  231 (313)
                      |+++
T Consensus        81 pvV~   84 (255)
T 1byk_A           81 SLVL   84 (255)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            6653

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=82.59  E-value=7.1  Score=34.16  Aligned_cols=171  Identities=12%  Similarity=0.090  Sum_probs=85.0

Q ss_pred             eEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH-H-Hhh
Q 042576           39 KLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA-F-MIS  112 (313)
Q Consensus        39 ~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~-~-mi~  112 (313)
                      +|+++. ++   -|...++.+.+.+++.|+++++-...  .+.+-+..-...+.  ..+|++|+.+...-.... + .+.
T Consensus         4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~i~~l~~--~~vdgiii~~~~~~~~~~~~~~~~   79 (306)
T 8abp_A            4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAA--SGAKGFVICTPDPKLGSAIVAKAR   79 (306)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHHHHHHHHHH--TTCCEEEEECSCGGGHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHHHHHHHHHH--cCCCEEEEeCCCchhhHHHHHHHH
Confidence            466553 22   34555677888888889887642110  11000000000001  237898887643222221 1 233


Q ss_pred             CCCceEEEeC-CC--CC-----cccccccChHHHHH-HHHHHHHHHhhc---CCEEEEEE-eCCCCCCcHHHHHHHHHHH
Q 042576          113 NPGIKTFRYD-PY--LG-----KLFLEEYDNKGMRE-TRKRAIEKAMKE---ARTWGIVL-GTLGRQGNPRILERLQKRM  179 (313)
Q Consensus       113 np~~~~y~yD-Py--s~-----~~~~e~~d~~~~l~-~R~~~I~kak~~---A~~~GIIv-gTLg~Q~~~~ii~~l~~ll  179 (313)
                      ..++|++.+| +.  ..     .+.....|....-+ .=.+++++....   .+++|++. |..+......-.+-.++-+
T Consensus        80 ~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l  159 (306)
T 8abp_A           80 GYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL  159 (306)
T ss_dssp             HTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHH
T ss_pred             HCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHH
Confidence            4578999999 32  21     22222334332211 112334332202   23899995 7765444445556667778


Q ss_pred             HHcCCc---EEEEEeCCCCHHH--------HhcCcCCccEEEEecC
Q 042576          180 EKKGFD---YVVIMMSEISPAR--------VALFEDSVDAWIQIAC  214 (313)
Q Consensus       180 ~~~Gkk---~y~i~v~einp~K--------Lanf~~~ID~fV~iaC  214 (313)
                      +++|..   ......+.-+.++        |...+ ++|+|+++++
T Consensus       160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~a~~i~~~  204 (306)
T 8abp_A          160 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP-EVKHWLIVGM  204 (306)
T ss_dssp             HHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCT-TCSEEEEECS
T ss_pred             HhcCCCCcEEEeeccCCCChHHHHHHHHHHHHhCC-CCceEEEEeC
Confidence            888753   4444456666543        44556 7998555544

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=82.28  E-value=3.7  Score=35.89  Aligned_cols=76  Identities=21%  Similarity=0.374  Sum_probs=53.6

Q ss_pred             cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCCCccccccCCCC
Q 042576          152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACPRLSIDWGDAFT  226 (313)
Q Consensus       152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCPrlsid~~~~f~  226 (313)
                      ..++||+|+..+....+..+++.+++.++++|....++.-+.-++++    +..+. ..+|++|+.+ +.  +..-..-.
T Consensus         9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~~~   85 (277)
T 3hs3_A            9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFHLN   85 (277)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCCCS
T ss_pred             CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHhCC
Confidence            67899999999988888899999999999999884445555556554    22231 2599999987 33  33333445


Q ss_pred             Cccc
Q 042576          227 KPLL  230 (313)
Q Consensus       227 kPvL  230 (313)
                      .|++
T Consensus        86 iPvV   89 (277)
T 3hs3_A           86 TPLV   89 (277)
T ss_dssp             SCEE
T ss_pred             CCEE
Confidence            5654

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=82.13  E-value=23  Score=31.02  Aligned_cols=164  Identities=7%  Similarity=-0.005  Sum_probs=85.6

Q ss_pred             CeEEEEecc---------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccH
Q 042576           38 GKLILAGTI---------QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHL  106 (313)
Q Consensus        38 ~~i~Lv~ti---------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHl  106 (313)
                      .+|+++..-         -|...++.+.+.+++.|+++++-....-...  +.+.    .+.. ..+|++|+.+...-..
T Consensus        23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~   97 (305)
T 3huu_A           23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKT----MIQS-KSVDGFILLYSLKDDP   97 (305)
T ss_dssp             CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHH----HHHT-TCCSEEEESSCBTTCH
T ss_pred             CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH----HHHh-CCCCEEEEeCCcCCcH
Confidence            458876432         2455567788899999999876322100000  0000    0000 2479988875432111


Q ss_pred             HHHHhhCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576          107 EAFMISNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK  182 (313)
Q Consensus       107 e~~mi~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~  182 (313)
                      .--.+....+|++.+|-...  .+.....|....-  |. +.+.  .+ ..++||+|.|..+......-.+-.++-++++
T Consensus        98 ~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g--~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~  173 (305)
T 3huu_A           98 IEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAA--YQ-LTQYLYHL-GHRHILFLQESGHYAVTEDRSVGFKQYCDDV  173 (305)
T ss_dssp             HHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHH--HH-HHHHHHHT-TCCSEEEEEESSCBHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHH--HH-HHHHHHHC-CCCeEEEEcCCcccchhHHHHHHHHHHHHHc
Confidence            11123335789998886542  1332334433221  21 1111  23 6689999999876555555566677888889


Q ss_pred             CCcEEEEEeCCCCH--HH-----HhcCcCCccEEEE
Q 042576          183 GFDYVVIMMSEISP--AR-----VALFEDSVDAWIQ  211 (313)
Q Consensus       183 Gkk~y~i~v~einp--~K-----Lanf~~~ID~fV~  211 (313)
                      |.+...+..+..+.  +.     |..-+ ++|+++-
T Consensus       174 g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~  208 (305)
T 3huu_A          174 KISNDCVVIKSMNDLRDFIKQYCIDASH-MPSVIIT  208 (305)
T ss_dssp             TCCCCEEEECSHHHHHHHC--------C-CCSEEEE
T ss_pred             CCCcccEEecCcHHHHHHHHHhhhcCCC-CCCEEEE
Confidence            97765444444322  11     33334 5888764

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=81.64  E-value=13  Score=32.80  Aligned_cols=161  Identities=13%  Similarity=0.076  Sum_probs=82.7

Q ss_pred             cHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHHH-hhCCCceEEEeCCCC
Q 042576           48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAFM-ISNPGIKTFRYDPYL  125 (313)
Q Consensus        48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~m-i~np~~~~y~yDPys  125 (313)
                      |...++.+.+.+++.|+++.+-......+.+-...-...+.  ..+|++|+.+...-.+ ..+. +....+|++.+|...
T Consensus        15 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   92 (313)
T 2h3h_A           15 WSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDS   92 (313)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCC
Confidence            45556778888888898876421000000000000000001  2378888765322111 1121 223578888888542


Q ss_pred             C---cccccccChHHHHH-HHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH---
Q 042576          126 G---KLFLEEYDNKGMRE-TRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR---  198 (313)
Q Consensus       126 ~---~~~~e~~d~~~~l~-~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K---  198 (313)
                      .   .+.....|....-+ .=.+++++.. ..++||+|-|..+......-.+-.++-+++.|.+...+..+.-+++.   
T Consensus        93 ~~~~~~~~V~~d~~~~g~~a~~~L~~~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~  171 (313)
T 2h3h_A           93 PDSGRYVYIGTDNYQAGYTAGLIMKELLG-GKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVS  171 (313)
T ss_dssp             TTSCCSCEEECCHHHHHHHHHHHHHHHHT-SCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHH
T ss_pred             CCcceeEEECcCHHHHHHHHHHHHHHHcC-CCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHH
Confidence            2   23223344332211 1133555555 67899999988654433444555677778888876655555555432   


Q ss_pred             -----HhcCcCCccEEEEe
Q 042576          199 -----VALFEDSVDAWIQI  212 (313)
Q Consensus       199 -----Lanf~~~ID~fV~i  212 (313)
                           |...+ ++|+++..
T Consensus       172 ~~~~~l~~~~-~~~ai~~~  189 (313)
T 2h3h_A          172 LAEAALNAHP-DLDAFFGV  189 (313)
T ss_dssp             HHHHHHHHCT-TCCEEEEC
T ss_pred             HHHHHHHHCc-CceEEEEc
Confidence                 33345 68887754

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=81.44  E-value=13  Score=32.18  Aligned_cols=170  Identities=10%  Similarity=-0.000  Sum_probs=83.4

Q ss_pred             CeEEEEec------cccHhHHHHHHHHHHhCCCeEEecCCC-CCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH
Q 042576           38 GKLILAGT------IQFASAIRAAKPELEKQGFKVMIPQSK-PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF  109 (313)
Q Consensus        38 ~~i~Lv~t------iQf~~~l~~~~~~L~~~g~~v~ipq~~-pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~  109 (313)
                      .+|+++..      --|...++.+.+.+++.|+++.+-... ...+.+-...-...+.  ..+|++|+.+...-.+ ..+
T Consensus         6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~~~~~~~   83 (289)
T 3brs_A            6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK--RKPDVILLAAADYEKTYDAA   83 (289)
T ss_dssp             CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--TCCSEEEECCSCTTTTHHHH
T ss_pred             cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH--hCCCEEEEeCCChHHhHHHH
Confidence            35776632      234555677888888889987652210 0000000000000001  2378888765332121 222


Q ss_pred             -HhhCCCceEEEeCCCCC---cccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576          110 -MISNPGIKTFRYDPYLG---KLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF  184 (313)
Q Consensus       110 -mi~np~~~~y~yDPys~---~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk  184 (313)
                       .+....+|++.+|-...   .+.....|..+.-+.= .+++++.- ..+++|+|-|..+......-.+-.++-++++|.
T Consensus        84 ~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~~~G-~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  162 (289)
T 3brs_A           84 KEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLVR-KSGKIGVISFVKNSKTAMDREEGLKIGLSDDSN  162 (289)
T ss_dssp             TTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHHHTS-SSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHHHcC-CCceEEEEECCCCCccHHHHHHHHHHHHHhCCC
Confidence             13345789988885432   1322334433322111 12222211 268999998875544334445556677778887


Q ss_pred             cEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576          185 DYVVIMMSEISPAR--------VALFEDSVDAWIQ  211 (313)
Q Consensus       185 k~y~i~v~einp~K--------Lanf~~~ID~fV~  211 (313)
                      ....+..+..+++.        |..-+ ++|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~  196 (289)
T 3brs_A          163 KIEAIYYCDSNYDKAYDGTVELLTKYP-DISVMVG  196 (289)
T ss_dssp             GEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred             cEEeeecCCCCHHHHHHHHHHHHHhCC-CceEEEE
Confidence            64434455555542        22234 5777664

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=80.72  E-value=24  Score=30.93  Aligned_cols=163  Identities=13%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             eEEEEeccc---cHhHHHHHHHHHHhCCC---eEEe--cCC--CCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576           39 KLILAGTIQ---FASAIRAAKPELEKQGF---KVMI--PQS--KPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA  108 (313)
Q Consensus        39 ~i~Lv~tiQ---f~~~l~~~~~~L~~~g~---~v~i--pq~--~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~  108 (313)
                      +|+++-++.   |...++.+.+.|++.||   ++.+  -..  .+-..-+.+    ..+.. ..+|.+|.+|+..  ...
T Consensus         4 ~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~----~~l~~-~~vDgII~~~~~~--~~~   76 (295)
T 3lft_A            4 KIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMS----KQLVA-NGNDLVVGIATPA--AQG   76 (295)
T ss_dssp             EEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHH----HHHTT-SSCSEEEEESHHH--HHH
T ss_pred             EEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHH----HHHHh-cCCCEEEECCcHH--HHH
Confidence            577775443   56677889999999999   6432  111  110000000    00111 2479988876432  222


Q ss_pred             HHhhCCCceEEEeC---CCCC-----------cccccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHH
Q 042576          109 FMISNPGIKTFRYD---PYLG-----------KLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER  174 (313)
Q Consensus       109 ~mi~np~~~~y~yD---Pys~-----------~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~  174 (313)
                      +.-..+..|++-.+   |...           .++-.. +.....+.=..+++... ..+++|+|.|... ......++-
T Consensus        77 ~~~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~-~~~~~~~~~~~l~~~~p-g~~~I~~i~~~~~-~~~~~r~~g  153 (295)
T 3lft_A           77 LASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS-DHNPAQQQVELIKALTP-NVKTIGALYSSSE-DNSKTQVEE  153 (295)
T ss_dssp             HHHHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE-ECCCHHHHHHHHHHHCT-TCCEEEEEEETTC-HHHHHHHHH
T ss_pred             HHHcCCCCCEEEEeccChhhcCccccccCCCCcEEEEE-CCccHHHHHHHHHHhCC-CCcEEEEEeCCCC-cchHHHHHH
Confidence            22234678877654   3211           111111 11111111122233323 5789999999843 334556778


Q ss_pred             HHHHHHHcCCcEEEEEeCCCC--HHHHhcCcCCccEEEE
Q 042576          175 LQKRMEKKGFDYVVIMMSEIS--PARVALFEDSVDAWIQ  211 (313)
Q Consensus       175 l~~ll~~~Gkk~y~i~v~ein--p~KLanf~~~ID~fV~  211 (313)
                      .++.+++.|.+.....+....  .+.+..+..++|+++.
T Consensus       154 ~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~  192 (295)
T 3lft_A          154 FKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWV  192 (295)
T ss_dssp             HHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEE
T ss_pred             HHHHHHHcCCEEEEEecCCHHHHHHHHHHHHhcCCEEEE
Confidence            888899999887665554322  2233333226888765

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=80.04  E-value=28  Score=29.95  Aligned_cols=167  Identities=10%  Similarity=0.049  Sum_probs=87.5

Q ss_pred             CeEEEEecc---------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576           38 GKLILAGTI---------QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA  108 (313)
Q Consensus        38 ~~i~Lv~ti---------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~  108 (313)
                      .+|+++..-         -|...++.+.+.+++.|+++++-....-...|. -.- ..+.. ..+|++|+.+...-...-
T Consensus         9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~~-~~~~~-~~vdgiIi~~~~~~~~~~   85 (292)
T 3k4h_A            9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFN-GVV-KMVQG-RQIGGIILLYSRENDRII   85 (292)
T ss_dssp             CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHH-HHH-HHHHT-TCCCEEEESCCBTTCHHH
T ss_pred             CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHH-HHH-HHHHc-CCCCEEEEeCCCCChHHH
Confidence            457766432         345556778889999999977632211000000 000 00000 247998887543222111


Q ss_pred             HHhhCCCceEEEeCCCCCc---ccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576          109 FMISNPGIKTFRYDPYLGK---LFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF  184 (313)
Q Consensus       109 ~mi~np~~~~y~yDPys~~---~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk  184 (313)
                      -.+....+|++.+|-....   +.....|....-+.= ..+++  + ..+++|+|.|..+......-.+-.++-++++|.
T Consensus        86 ~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~  162 (292)
T 3k4h_A           86 QYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS--L-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADI  162 (292)
T ss_dssp             HHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH--T-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH--C-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCC
Confidence            1233457899888854322   333334433221111 11222  4 678999999886655445556667778888887


Q ss_pred             cEE--EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576          185 DYV--VIMMSEISPAR--------VALFEDSVDAWIQ  211 (313)
Q Consensus       185 k~y--~i~v~einp~K--------Lanf~~~ID~fV~  211 (313)
                      ..-  .+.-+..+.+.        |...+ ++|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~  198 (292)
T 3k4h_A          163 VLPKEYILHFDFSRESGQQAVEELMGLQQ-PPTAIMA  198 (292)
T ss_dssp             CCCGGGEEECCSSHHHHHHHHHHHHTSSS-CCSEEEE
T ss_pred             CCChheEEecCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence            532  23345555432        33445 6898874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	92.94
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	92.8
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	88.53
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	87.13
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	85.2
d1u11a_	159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	85.02
d1oboa_	169	Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11	84.55
d1czna_	169	Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI	83.46

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.41  Score=40.22  Aligned_cols=158  Identities=8%  Similarity=-0.007  Sum_probs=91.9

Q ss_pred             ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHHHhhCCCceEEEeCCCC
Q 042576           47 QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAFMISNPGIKTFRYDPYL  125 (313)
Q Consensus        47 Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~mi~np~~~~y~yDPys  125 (313)
                      .|...+..+.+.+++.|+++++-......+.+...+--..+.  ..+|++|..++...+ .....+....+|++.+|-+.
T Consensus        14 ~~~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~~--~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~   91 (271)
T d1jyea_          14 APSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLA--QRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSD   91 (271)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHT--TTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCT
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHh--cCCCEEEeccccCchhHHHHHHHhcCCCeeeeeccc
Confidence            566667889999999999987632211111111111000011  237888876644322 12234566788999998643


Q ss_pred             C-cccccccChHHH---HHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH---
Q 042576          126 G-KLFLEEYDNKGM---RETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR---  198 (313)
Q Consensus       126 ~-~~~~e~~d~~~~---l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K---  198 (313)
                      . .+.....|..+.   ...+  ++  .+ ..+++|+|.|..+.....+-.+-.++.++++|.+.....-++.+.+.   
T Consensus        92 ~~~~~~V~~D~~~~~~~~~~~--L~--~~-G~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (271)
T d1jyea_          92 QTPINSIIFSHEDGTRLGVEH--LV--AL-GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQ  166 (271)
T ss_dssp             TSSSCEEEECHHHHHHHHHHH--HH--HH-TCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHHHHH
T ss_pred             cccCCccccchhhccccceee--ee--cc-ccccccccccccccchHHhhhHHHHHHhhhccccccceeccccccccccc
Confidence            2 232223343322   2111  22  24 66789999988766666666777888899999988888888777643   


Q ss_pred             -----HhcCcCCccEEEEe
Q 042576          199 -----VALFEDSVDAWIQI  212 (313)
Q Consensus       199 -----Lanf~~~ID~fV~i  212 (313)
                           ++..+ .+|+++..
T Consensus       167 ~~~~~~~~~~-~~~ai~~~  184 (271)
T d1jyea_         167 QTMQMLNEGI-VPTAMLVA  184 (271)
T ss_dssp             HHHHHHHTTC-CCSEEEES
T ss_pred             hhhhhhhccc-ccchhhcc
Confidence                 33444 57775543

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.19  Score=41.97  Aligned_cols=77  Identities=14%  Similarity=0.282  Sum_probs=56.4

Q ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhc----Cc-CCccEEEEecCCCccccccCCCCC
Q 042576          153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVAL----FE-DSVDAWIQIACPRLSIDWGDAFTK  227 (313)
Q Consensus       153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLan----f~-~~ID~fV~iaCPrlsid~~~~f~k  227 (313)
                      .|+||+|+-++.-..+..+++.|.+.++++|....++. +.-++++...    +- ..+|++|+.++.......-.....
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~-s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhccccceeeccccchHHHHHHHcCC
Confidence            58999999999888888999999999999998875544 6778776443    21 249999998776544433344455


Q ss_pred             ccc
Q 042576          228 PLL  230 (313)
Q Consensus       228 PvL  230 (313)
                      |++
T Consensus        81 p~v   83 (255)
T d1byka_          81 SLV   83 (255)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            543

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=88.53  E-value=0.66  Score=35.25  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=45.8

Q ss_pred             EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576          156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR  216 (313)
Q Consensus       156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr  216 (313)
                      |+||-+|..+ +...+++.|.+.|.+.|.++-++-+.+.+++.|...    |. |+++||-
T Consensus         2 V~IvY~S~tG-nTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~----d~-ii~g~pT   56 (137)
T d2fz5a1           2 VEIVYWSGTG-NTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASK----DV-ILLGCPA   56 (137)
T ss_dssp             EEEEECCSSS-HHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTC----SE-EEEECCC
T ss_pred             EEEEEECCCh-HHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhhcc----ce-EEEEEec
Confidence            7899998864 566799999999999999999999999999988654    45 5666773

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=87.13  E-value=0.46  Score=39.32  Aligned_cols=65  Identities=8%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCCCc
Q 042576          152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACPRL  217 (313)
Q Consensus       152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCPrl  217 (313)
                      ..++||+|+.++.-..+..+++.+++.++++|.+..++.. .-++++-    .++ ...+|+.|..++...
T Consensus         2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~e~~~i~~~~~~~vdgii~~~~~~~   71 (275)
T d2nzug1           2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-DQNQDKELHLLNNMLGKQVDGIIFMSGNVT   71 (275)
T ss_dssp             CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEECCSCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC-CCCHHHHHHHHHHHHhcCCceeeccccchh
Confidence            6789999999998777889999999999999998765544 4455431    222 124999999988763

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.20  E-value=0.69  Score=38.10  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cCc-CCccEEEEecCCC
Q 042576          154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LFE-DSVDAWIQIACPR  216 (313)
Q Consensus       154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf~-~~ID~fV~iaCPr  216 (313)
                      |+||+|+.+++--.+.++++.+++.++++|....++ .+.-++++..    .+. ..+|.+|++....
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~-~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~   67 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG-NAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY   67 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE-eCCCCHHHHHHHHHHHHhcCCCEEeeecccc
Confidence            689999999999899999999999999999876544 4455555422    221 1489988865543

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

Probab=85.02  E-value=1.2  Score=36.11  Aligned_cols=58  Identities=19%  Similarity=0.299  Sum_probs=46.5

Q ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576          153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA  213 (313)
Q Consensus       153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia  213 (313)
                      +.++|||+|+   +-...+++...+.|++.|.++-+.+.| .=+|++|..|-     +++++||.+|
T Consensus         2 ~P~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~A   65 (159)
T d1u11a_           2 APVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGA   65 (159)
T ss_dssp             CCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred             cCeEEEEeCC---HhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEe
Confidence            5679999987   677999999999999999998887776 45899988772     2477777543

>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Anabaena, pcc 7119 and 7120 [TaxId: 1163]

Probab=84.55  E-value=0.3  Score=39.29  Aligned_cols=56  Identities=16%  Similarity=0.291  Sum_probs=40.5

Q ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576          153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR  216 (313)
Q Consensus       153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr  216 (313)
                      ||+|+|+.||..| +...++++|.+.|...+  +-+.-+.+.++..|.++    |. |+++||-
T Consensus         1 ~KKI~I~YgS~tG-nTe~vA~~I~~~l~~~~--~~v~~i~~~~~~~l~~~----d~-~i~g~sT   56 (169)
T d1oboa_           1 AKKIGLFYGTQTG-KTESVAEIIRDEFGNDV--VTLHDVSQAEVTDLNDY----QY-LIIGCPT   56 (169)
T ss_dssp             CCSEEEEECCSSS-HHHHHHHHHHHHHCTTT--EEEEETTTCCGGGGGGC----SE-EEEEEEE
T ss_pred             CCEEEEEEECCCc-hHHHHHHHHHHHhccCC--ceEEEcccCChhhhccC----CE-EEEEEec
Confidence            6899999999753 34568899998887665  44677888888776655    43 5556663

>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Synechococcus elongatus PCC 7942 [TaxId: 1140]

Probab=83.46  E-value=0.59  Score=37.67  Aligned_cols=55  Identities=16%  Similarity=0.336  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576          155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR  216 (313)
Q Consensus       155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr  216 (313)
                      +|+|+.||-.+- ...++++|.+.|+..|. +-++-+...++..|.++.    . |++.||=
T Consensus         2 KI~I~YgS~tGn-Te~vA~~ia~~l~~~~~-v~i~~~~~~~~~~l~~~d----~-li~g~sT   56 (169)
T d1czna_           2 KIGLFYGTQTGV-TQTIAESIQQEFGGESI-VDLNDIANADASDLNAYD----Y-LIIGCPT   56 (169)
T ss_dssp             CEEEEECCSSSH-HHHHHHHHHHHHTSTTT-EEEEEGGGCCGGGGGGCS----E-EEEECCE
T ss_pred             cEEEEEECCCch-HHHHHHHHHHHhhhCCC-eeEEeccccccccccccC----e-EEEEecC
Confidence            599999998654 66799999999988885 667778888888877654    3 6677773