Citrus Sinensis ID: 042608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
SLQTNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPSFSASLCQGSSRT
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEccccccccHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEccEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
slqtnnnnlhengnrsksrflgvrqrpsgrwVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGrnaktnfihhgiINFHEEINysllgknprLHQLLQQAAVTKSHAISSSSKFlnnnmanrddesinfDTLVEETIFcsststadcsvkshgnfdnglsfgsskVYSSVvvapsfsaslcqgssrt
Flexible Loop (DISEMBL)
slqtnnnnlhengnrsksrflgvrqrpsgrwvaeikesSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPsfsaslcqgssrt
Low Complexity Region (SEG)
SLQTNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKaeeaamaydiaaRLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKvyssvvvapsfsasLCQGSSRT
Disordered region (IsUnstruct)
*****************************RWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQQAAV************************INFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAP*************
Disordered Region (DISOPRED)
***********************RQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIH*********************************************************************************************VYSSVVVAPSFSAS*CQG****
Disordered Region (DISEMBL)
SLQTNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQ***********SSSKFLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPSFS**********
Disordered Region (DISPRO)
*****************SRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH**********************************************************************T***SVKSHGNFDNGLSFGSSKV******A*SFSA*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLQTNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPSFSASLCQGSSRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q6J9S1	253	Ethylene-responsive trans	yes	no	0.354	0.268	0.647	3e-21
Q9M644	211	Ethylene-responsive trans	no	no	0.328	0.298	0.603	1e-17
Q6J9Q2	348	Ethylene-responsive trans	no	no	0.432	0.238	0.478	3e-17
P93007	218	Ethylene-responsive trans	no	no	0.416	0.366	0.5	1e-16
O82503	287	Ethylene-responsive trans	no	no	0.390	0.261	0.52	2e-16
P42736	248	Ethylene-responsive trans	no	no	0.354	0.274	0.527	2e-16
O80340	222	Ethylene-responsive trans	no	no	0.359	0.310	0.563	3e-16
O80339	225	Ethylene-responsive trans	no	no	0.333	0.284	0.640	3e-16
Q9FE67	200	Ethylene-responsive trans	no	no	0.338	0.325	0.6	8e-16
Q9FZ90	245	Ethylene-responsive trans	no	no	0.307	0.240	0.593	1e-15

>sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 57/68 (83%)

Query: 11 ENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRN 70
          E    +K++F+GVRQRPSG+WVAEIK+++QK+R+WLGTF+ AEEAA AYD AA LLRG N
Sbjct: 13 EKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSN 72

Query: 71 AKTNFIHH 78
           +TNF +H
Sbjct: 73 TRTNFANH 80

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 50/63 (79%)

Query: 18 SRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIH 77
          +RFLGVR+RP GR+ AEI++ + K R WLGTFD AEEAA+AYD AAR +RG  A+TNF++
Sbjct: 18 TRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVY 77

Query: 78 HGI 80
            +
Sbjct: 78 SDM 80

Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 11/94 (11%)

Query: 13  GNRSKS----RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRG 68
           G RSK     RFLGVR+RP GR+ AEI++ + K R WLGTFD A EAA+AYD AA  +RG
Sbjct: 44  GRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRG 103

Query: 69  RNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLL 102
             A+TNF+       +   +   +  NP LH L+
Sbjct: 104 TQARTNFV-------YTPTDVHTILTNPNLHSLI 130

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query: 3   QTNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIA 62
           Q+++  L E  N  +  + GVRQRP G+W AEI++ ++  R+WLGTFD AEEAA+AYD A
Sbjct: 53  QSSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKA 112

Query: 63  ARLLRGRNAKTNFIHHGIIN 82
           A   RG  AK NF  H  +N
Sbjct: 113 AFEFRGHKAKLNFPEHIRVN 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 52/75 (69%)

Query: 19  RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH 78
           +F GVRQRP G+W AEI++ S+++R+WLGTFD AEEAA+ YD AA  LRG NA+ NF   
Sbjct: 86  KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPP 145

Query: 79  GIINFHEEINYSLLG 93
            +    EE +  + G
Sbjct: 146 PVTENVEEASTEVKG 160

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 53/72 (73%), Gaps = 4/72 (5%)

Query: 11  ENGNRSKSR--FLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRG 68
           E G R K +  + G+R+RP G+W AEI++  + +R+WLGTF+ AEEAAMAYD+AA+ +RG
Sbjct: 68  EPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRG 127

Query: 69  RNAKTNF--IHH 78
             AK NF  +HH
Sbjct: 128 DKAKLNFPDLHH 139

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 5  NNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAAR 64
            N  H N    + R+ GVR+RP GR+ AEI++  +K R+WLGTFD AEEAA AYD AAR
Sbjct: 12 TTNQTHNNAK--EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAR 69

Query: 65 LLRGRNAKTNF 75
            RG  AKTNF
Sbjct: 70 DFRGAKAKTNF 80

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 49/64 (76%)

Query: 12 NGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNA 71
          NG+  + RF GVR+RP GR+ AEI++  +K R+WLGTFD AEEAA AYD AAR LRG  A
Sbjct: 20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKA 79

Query: 72 KTNF 75
          KTNF
Sbjct: 80 KTNF 83

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 15 RSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTN 74
          R +  F GVR+RP GR+ AEI++  +K R+WLGTFD AEEAA AYD AAR  RG  AKTN
Sbjct: 28 RKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTN 87

Query: 75 FIHHG 79
          F   G
Sbjct: 88 FPLPG 92

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 19 RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIH 77
          +++GVR+RP GR+ AEI+  + K R WLGTFD AEEAA+AYD AAR +RG  A+TNF++
Sbjct: 38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVY 96

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
255541878	236	hypothetical protein RCOM_1618730 [Ricin	0.958	0.779	0.599	2e-54
255641569	225	unknown [Glycine max]	0.864	0.737	0.603	5e-51
357477723	204	Ethylene-responsive transcription factor	0.781	0.735	0.583	5e-42
449441127	199	PREDICTED: ethylene-responsive transcrip	0.937	0.904	0.497	5e-35
357477623	220	Ethylene-responsive transcription factor	0.473	0.413	0.673	7e-30
388499190	335	unknown [Medicago truncatula]	0.317	0.182	0.786	9e-21
356506302	341	PREDICTED: uncharacterized protein LOC10	0.390	0.219	0.636	2e-20
357502029	463	Ethylene-responsive transcription factor	0.322	0.133	0.725	2e-20
297742491	748	unnamed protein product [Vitis vinifera]	0.338	0.086	0.723	2e-20
147781798	345	hypothetical protein VITISV_011417 [Viti	0.296	0.165	0.789	3e-20

>gi|255541878|ref|XP_002512003.1| hypothetical protein RCOM_1618730 [Ricinus communis] gi|223549183|gb|EEF50672.1| hypothetical protein RCOM_1618730 [Ricinus communis]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 145/207 (70%), Gaps = 23/207 (11%)

Query: 2   LQTNNNNLHENG--------------NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLG 47
           LQTN+N + + G              N    ++LGVRQRPSGRWVAEIK++SQKLRLWLG
Sbjct: 23  LQTNDNTIEKGGKKMPMKQAKRGIIVNNKGRKYLGVRQRPSGRWVAEIKDASQKLRLWLG 82

Query: 48  TFDKAEEAAMAYDIAARLLRGRNAKTNFI--HHG-IINFHEEINYSLLGKNPRLHQLLQQ 104
           TFD AEEAA++YD AARLLRGRNAKTNF   HHG ++N H+EI   LLGKNPRLHQLLQ 
Sbjct: 83  TFDTAEEAALSYDSAARLLRGRNAKTNFPNDHHGNMVNTHQEI-CRLLGKNPRLHQLLQH 141

Query: 105 AAVTKSHAISSSSK---FLNNNMANRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFD 161
            AV K+H  S  S+    +N N  N+ D S NFD+LVE+TI CSS+S  D      G+  
Sbjct: 142 -AVLKNHGKSLLSRRIPLVNQNERNQVDSSFNFDSLVEDTIICSSSSADDHDHNQDGSDK 200

Query: 162 -NGLSFGSSKVYSSVVVAPSFSASLCQ 187
             GLSFGS KVYSSV+VAPSFSASLCQ
Sbjct: 201 FCGLSFGSCKVYSSVIVAPSFSASLCQ 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641569|gb|ACU21058.1| unknown [Glycine max]

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 132/179 (73%), Gaps = 13/179 (7%)

Query: 7   NNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLL 66
           N + +  N+S+ +FLGVRQRPSGRW+AEIK+SSQKLRLWLGTFDKAEEAA+AYD AARLL
Sbjct: 54  NKVPKVANKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLL 113

Query: 67  RGRNAKTNFIHH-GIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMA 125
           RGRNAKTNF ++ GI+N   E + S+LGKNPR +QLL+ A +  +HA+ S+     N + 
Sbjct: 114 RGRNAKTNFPNNPGIMNTTHEEDCSILGKNPRAYQLLKHAVMKNNHALYSTVMPWKNQIM 173

Query: 126 NRDDESINFDTLVEETIFCSSTSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPSFSAS 184
            RD+    FDTLVEETI         CS+   G+   G+SFGSSKVYS VVVAPSFSAS
Sbjct: 174 VRDE----FDTLVEETIV--------CSIPEQGSGCCGISFGSSKVYSPVVVAPSFSAS 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477723|ref|XP_003609147.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355510202|gb|AES91344.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 127/173 (73%), Gaps = 23/173 (13%)

Query: 17  KSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFI 76
           + ++LGVRQRPSGRW+AEIK+SSQKLRLWLGTFD+AE+AA++YD AARLLRGRNAKTNF 
Sbjct: 50  QKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALSYDSAARLLRGRNAKTNF- 108

Query: 77  HHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAISSSSKFLNNNMANRDDESINFDT 136
                N HE+ ++S+LGKNPR  QLL+  A+ K+HA+SSSS   +  M    ++ +  D 
Sbjct: 109 ----PNTHEQ-DFSILGKNPRAFQLLKH-AMMKNHAVSSSSSVYSTVMMPWKNDQL--DA 160

Query: 137 LVEETIFCS-----STSTADCSVKSHGNFDNGLSFGSSKVYSSVVVAPSFSAS 184
           +VEETI CS      ++ A CS         G+SFG+SKVYSSVVVAPSFSAS
Sbjct: 161 IVEETIVCSIPDDEGSTAAGCS---------GISFGNSKVYSSVVVAPSFSAS 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441127|ref|XP_004138335.1| PREDICTED: ethylene-responsive transcription factor ERF086-like [Cucumis sativus] gi|449477490|ref|XP_004155038.1| PREDICTED: ethylene-responsive transcription factor ERF086-like [Cucumis sativus]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 132/201 (65%), Gaps = 21/201 (10%)

Query: 2   LQTNNNNLHENG--NRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAY 59
           + TN+++L  N   N  + RFLGVRQRPSGRWVAEIK SSQKLRLWLGTF++AE+AAMAY
Sbjct: 1   MATNSSSLPPNQEINHGRRRFLGVRQRPSGRWVAEIKVSSQKLRLWLGTFNRAEDAAMAY 60

Query: 60  DIAARLLRGRNAKTNF---IHHGIIN--FHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 114
           D AARLLRGR+AKTNF    HHG  N   ++E   SL   +P+L +LLQ A +     + 
Sbjct: 61  DRAARLLRGRSAKTNFSYDYHHGFFNSTINQEQTPSLFEHSPKLCRLLQHALMKNRSRLI 120

Query: 115 SSSKFLNNNMANRDDESIN-----FDTLVEETIFCSSTSTADCSVKSHGNFDN-----GL 164
           S++    ++      + I+      D++VE+TIFCSST+     V+++ N  N     G 
Sbjct: 121 STTDHQYHHRRRHQQQQISRNNGGIDSVVEDTIFCSSTNL----VENNNNSSNKGCGCGF 176

Query: 165 SFGSSKVYSSVVVAPSFSASL 185
           SFG SKVY+SV VAPSFS+ +
Sbjct: 177 SFGGSKVYTSVFVAPSFSSDV 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477623|ref|XP_003609097.1| Ethylene-responsive transcription factor, partial [Medicago truncatula] gi|355510152|gb|AES91294.1| Ethylene-responsive transcription factor, partial [Medicago truncatula]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 83/98 (84%), Gaps = 7/98 (7%)

Query: 17  KSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFI 76
           + ++LGVRQRPSGRW+AEIK+SSQKLRLWLGTFD+AE+AA++YD AARLLRGRNAKTNF 
Sbjct: 130 QKKYLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAALSYDSAARLLRGRNAKTNF- 188

Query: 77  HHGIINFHEEINYSLLGKNPRLHQLLQQAAVTKSHAIS 114
                N HE+ ++S+LGKNPR  QLL+  A+ K+HA+S
Sbjct: 189 ----PNTHEQ-DFSILGKNPRAFQLLKH-AMMKNHAVS 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499190|gb|AFK37661.1| unknown [Medicago truncatula]

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query: 15 RSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTN 74
          R   RF+GVRQRPSGRWVAEIK+S QK+RLWLGTFD AEEAA AYD AAR LRG NA+TN
Sbjct: 18 RGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDSAEEAARAYDTAARALRGANARTN 77

Query: 75 F 75
          F
Sbjct: 78 F 78

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506302|ref|XP_003521924.1| PREDICTED: uncharacterized protein LOC100810022 [Glycine max]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 1  SLQTNNNNLHENGNRSKS--RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMA 58
          ++  +NN++    N+  S  RF+GVRQRPSGRWVAEIK+SSQ +RLWLGT+D  EEAA A
Sbjct: 17 TITASNNSMATKSNKPISVRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARA 76

Query: 59 YDIAARLLRGRNAKTNF 75
          YD AAR LRG NA+TNF
Sbjct: 77 YDEAARALRGENARTNF 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502029|ref|XP_003621303.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|124360260|gb|ABN08273.1| Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] gi|355496318|gb|AES77521.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 54/62 (87%)

Query: 15 RSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTN 74
          RS+ RF+GVRQRPSGRWVAEIK++ QK+R+WLGTFD AEEAA AYD AA +LRG N +TN
Sbjct: 37 RSRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACILRGSNTRTN 96

Query: 75 FI 76
          F+
Sbjct: 97 FL 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742491|emb|CBI34640.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 11  ENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRN 70
           +  +R   RF+GVRQRPSGRWVAEIK+S QK+RLWLGTFD AE+AA AYD AAR LRG N
Sbjct: 70  KTSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDQAARSLRGAN 129

Query: 71  AKTNF 75
           A+TNF
Sbjct: 130 ARTNF 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781798|emb|CAN65440.1| hypothetical protein VITISV_011417 [Vitis vinifera]

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 51/57 (89%)

Query: 19  RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNF 75
           RF+GVRQRPSGRWVAEIK+SSQ++RLWLGT+D  EEAA AYD AAR LRG NA+TNF
Sbjct: 101 RFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAARALRGENARTNF 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2183174	253	RAP2.11 "related to AP2 11" [A	0.479	0.363	0.432	9.8e-16
TAIR|locus:2182993	348	PUCHI [Arabidopsis thaliana (t	0.479	0.264	0.378	1.3e-13
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.333	0.284	0.484	4.5e-11
TAIR|locus:2159068	211	LEP "LEAFY PETIOLE" [Arabidops	0.385	0.350	0.391	7.4e-11
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.359	0.372	0.442	1.2e-10
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.348	0.301	0.434	2e-10
TAIR|locus:2198978	256	AT1G80580 [Arabidopsis thalian	0.296	0.222	0.491	4.3e-10
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.328	0.258	0.460	4.5e-10
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.317	0.305	0.459	5.2e-10
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.338	0.295	0.415	6.6e-10

TAIR|locus:2183174 RAP2.11 "related to AP2 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 42/97 (43%), Positives = 56/97 (57%)

Query:     4 TNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXX 63
             T      E    +K++F+GVRQRPSG+WVAEIK+++QK+R+WLGTF+             
Sbjct:     6 TPKQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAA 65

Query:    64 RLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQ 100
              LLRG N +TNF +H    F      SL  +N  LHQ
Sbjct:    66 CLLRGSNTRTNFANH----FPNNSQLSLKIRN-LLHQ 97

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0035865 "cellular response to potassium ion" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2182993 PUCHI [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 39/103 (37%), Positives = 52/103 (50%)

Query:     4 TNNNNLHENGNRSKS----RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXX 59
             T        G RSK     RFLGVR+RP GR+ AEI++ + K R WLGTFD         
Sbjct:    35 TTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAY 94

Query:    60 XXXXRLLRGRNAKTNFIHHGIINFHEEINYSLLGKNPRLHQLL 102
                   +RG  A+TNF++    + H     ++L  NP LH L+
Sbjct:    95 DRAALSMRGTQARTNFVYTPT-DVH-----TIL-TNPNLHSLI 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009908 "flower development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0010432 "bract development" evidence=IGI;IMP

GO:0010451 "floral meristem growth" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI;IMP

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/64 (48%), Positives = 39/64 (60%)

Query:    12 NGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLLRGRNA 71
             NG+  + RF GVR+RP GR+ AEI++  +K R+WLGTFD             R LRG  A
Sbjct:    20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKA 79

Query:    72 KTNF 75
             KTNF
Sbjct:    80 KTNF 83

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2159068 LEP "LEAFY PETIOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:     4 TNNNNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXX 63
             T++ +  +  ++  +RFLGVR+RP GR+ AEI++ + K R WLGTFD             
Sbjct:     4 TSSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAA 63

Query:    64 RLLRGRNAKTNFIH 77
             R +RG  A+TNF++
Sbjct:    64 RSMRGTRARTNFVY 77

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/70 (44%), Positives = 39/70 (55%)

Query:     7 NNLHENGNRSKS-RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRL 65
             N  H   N +K  R+ GVR+RP GR+ AEI++  +K R+WLGTFD             R 
Sbjct:    17 NPTHHESNAAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARD 76

Query:    66 LRGRNAKTNF 75
              RG  AKTNF
Sbjct:    77 FRGVKAKTNF 86

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/69 (43%), Positives = 38/69 (55%)

Query:     7 NNLHENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLL 66
             N  H N    + R+ GVR+RP GR+ AEI++  +K R+WLGTFD             R  
Sbjct:    14 NQTHNNAK--EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDF 71

Query:    67 RGRNAKTNF 75
             RG  AKTNF
Sbjct:    72 RGAKAKTNF 80

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2198978 AT1G80580 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 28/57 (49%), Positives = 34/57 (59%)

Query:    20 FLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLLRGRNAKTNFI 76
             F+GVR+RP GRW AEI++   + R WLGTFD             R LRG  AKTNF+
Sbjct:   116 FMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNFV 172

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:    13 GNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLLRGRNAK 72
             G+  + R+ GVR+RP GR+ AEI++  +K R+WLGTFD             R LRG  AK
Sbjct:    20 GSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAK 79

Query:    73 TNF 75
             TNF
Sbjct:    80 TNF 82

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 28/61 (45%), Positives = 35/61 (57%)

Query:    15 RSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLLRGRNAKTN 74
             R +  F GVR+RP GR+ AEI++  +K R+WLGTFD             R  RG  AKTN
Sbjct:    28 RKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTN 87

Query:    75 F 75
             F
Sbjct:    88 F 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 27/65 (41%), Positives = 33/65 (50%)

Query:    11 ENGNRSKSRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKXXXXXXXXXXXXRLLRGRN 70
             E     K R+ GVRQRP G+W AEI++  +  R+WLGTFD                RG  
Sbjct:    68 EEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNK 127

Query:    71 AKTNF 75
             AK NF
Sbjct:   128 AKLNF 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-30
pfam00847	53	pfam00847, AP2, AP2 domain	2e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  109 bits (275), Expect = 6e-32
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 19 RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNF 75
          ++ GVRQRP G+WVAEI++ S+  R+WLGTFD AEEAA AYD AA   RGR+A+ NF
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNF 57

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  105 bits (265), Expect = 2e-30
 Identities = 37/58 (63%), Positives = 44/58 (75%)

Query: 18 SRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNF 75
          S++ GVRQRP G+WVAEI++ S   R+WLGTFD AEEAA AYD AA  LRG +A  NF
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 18 SRFLGVRQRPS-GRWVAEIKESSQKL--RLWLGTFDKAEEAAMAYDIAARLLRG 68
          S + GVR     GRWVAEI++  +K   R  LGTF   EEAA A   A   LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.61
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.25
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	87.11

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=1.3e-21  Score=135.27  Aligned_cols=61  Identities=61%  Similarity=0.933  Sum_probs=57.5

Q ss_pred             CceeEEEECCCCcEEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 042608           18 SRFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH   78 (192)
Q Consensus        18 S~yrGV~~r~~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~~NFp~~   78 (192)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999876688999999999999999999999999999999999953

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=3.3e-21  Score=134.86  Aligned_cols=63  Identities=57%  Similarity=0.891  Sum_probs=59.8

Q ss_pred             ceeEEEECCCCcEEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 042608           19 RFLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHHGII   81 (192)
Q Consensus        19 ~yrGV~~r~~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~~NFp~~~~~   81 (192)
                      +|+||+++++|||+|+|+++..++++|||+|+|+||||.|||.++++++|.++.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999888999999999987888999999999999999999999999999999999998875

>PHA00280 putative NHN endonuclease

Probab=99.61  E-value=1.3e-15  Score=119.99  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             ccccccCCCCCCCceeEEEECC-CCcEEEEEEeCCCCcEEeeccccCHHHHHHHHHHHHHHhcCCCCC
Q 042608            6 NNNLHENGNRSKSRFLGVRQRP-SGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAK   72 (192)
Q Consensus         6 n~~~~~~~~~n~S~yrGV~~r~-~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~   72 (192)
                      |..+++..++|+|||+||++++ .|||+|+|+.  .+|+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        55 N~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         55 NSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3333446779999999999876 8999999996  667899999999999999997 77889999884

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.25  E-value=1.3e-11  Score=83.26  Aligned_cols=52  Identities=37%  Similarity=0.474  Sum_probs=45.5

Q ss_pred             CceeEEEECC-CCcEEEEEEeCCC---CcEEeeccccCHHHHHHHHHHHHHHhcCC
Q 042608           18 SRFLGVRQRP-SGRWVAEIKESSQ---KLRLWLGTFDKAEEAAMAYDIAARLLRGR   69 (192)
Q Consensus        18 S~yrGV~~r~-~GkW~A~I~~~~~---kkri~LGtFdt~EEAA~AYd~Aa~~~~G~   69 (192)
                      |+|+||++++ .++|+|+|++...   +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999877 8999999998321   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=87.11  E-value=2.3  Score=27.56  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cEEEEEE--e--CCCCcEEeeccccCHHHHHHHHHHHHHHhc
Q 042608           30 RWVAEIK--E--SSQKLRLWLGTFDKAEEAAMAYDIAARLLR   67 (192)
Q Consensus        30 kW~A~I~--~--~~~kkri~LGtFdt~EEAA~AYd~Aa~~~~   67 (192)
                      +|..+|.  .  .++.++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  3  345578899999999999999988777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-04
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		6e-04

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 20 FLGVRQRPSGRWVAEIKESSQK-LRLWLGTFDKXXXXXXXXXXXXRLLRGRNAKTNF 75
          + GVRQRP G++ AEI++ ++   R+WLGTF+               +RG  A  NF
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 20 FLGVRQRPSGRWVAEIKESSQ-KLRLWLGTFDKXXXXXXXXXXXXRLLRGRNAKTNF 75
          + GVRQRP G++ AEI++ ++   R+WLGTF+               +RG  A  NF
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-30

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  104 bits (261), Expect = 4e-30
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 19 RFLGVRQRPSGRWVAEIKESSQK-LRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNF 75
           + GVRQRP G++ AEI++ ++   R+WLGTF+ AE+AA+AYD AA  +RG  A  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.02
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	85.82
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	82.45

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=5.3e-25  Score=153.97  Aligned_cols=60  Identities=50%  Similarity=0.838  Sum_probs=56.6

Q ss_pred             ceeEEEECCCCcEEEEEEeCCC-CcEEeeccccCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 042608           19 RFLGVRQRPSGRWVAEIKESSQ-KLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH   78 (192)
Q Consensus        19 ~yrGV~~r~~GkW~A~I~~~~~-kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~~NFp~~   78 (192)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999899999999999874 68999999999999999999999999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.02  E-value=0.19  Score=36.07  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=21.0

Q ss_pred             CCCCceeEEEECC-CCcEEEEEEeCC
Q 042608           15 RSKSRFLGVRQRP-SGRWVAEIKESS   39 (192)
Q Consensus        15 ~n~S~yrGV~~r~-~GkW~A~I~~~~   39 (192)
                      ..+|+|+||+|.+ .+.|.|+-.+++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g   28 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGA   28 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETT
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCC
Confidence            5689999999877 799999999753

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=85.82  E-value=2.2  Score=30.48  Aligned_cols=44  Identities=20%  Similarity=0.440  Sum_probs=34.6

Q ss_pred             EEECCCC--cEEEEEEeCCCCcEEeecccc--CHHHHHHHHHHHHHHh
Q 042608           23 VRQRPSG--RWVAEIKESSQKLRLWLGTFD--KAEEAAMAYDIAARLL   66 (192)
Q Consensus        23 V~~r~~G--kW~A~I~~~~~kkri~LGtFd--t~EEAA~AYd~Aa~~~   66 (192)
                      ++..+.|  .|.-+.+.+++.+++-||.|.  |.+||....+++...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            4556654  499998887888899999997  7888888877777666

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=82.45  E-value=0.35  Score=38.14  Aligned_cols=38  Identities=8%  Similarity=-0.185  Sum_probs=28.8

Q ss_pred             eeEEEECCCCcEEEEEEeCCCCcEEeeccccCHHHHHHHHH
Q 042608           20 FLGVRQRPSGRWVAEIKESSQKLRLWLGTFDKAEEAAMAYD   60 (192)
Q Consensus        20 yrGV~~r~~GkW~A~I~~~~~kkri~LGtFdt~EEAA~AYd   60 (192)
                      ++||.+.+.++|.+.|... +  .++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence            4677542246788999875 3  467999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-26

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.4 bits (235), Expect = 1e-26
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 19 RFLGVRQRPSGRWVAEIKESSQKL-RLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNF 75
           + GVRQRP G++ AEI++ ++   R+WLGTF+ AE+AA+AYD AA  +RG  A  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2.7e-25  Score=154.23  Aligned_cols=60  Identities=50%  Similarity=0.834  Sum_probs=55.8

Q ss_pred             ceeEEEECCCCcEEEEEEeCC-CCcEEeeccccCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 042608           19 RFLGVRQRPSGRWVAEIKESS-QKLRLWLGTFDKAEEAAMAYDIAARLLRGRNAKTNFIHH   78 (192)
Q Consensus        19 ~yrGV~~r~~GkW~A~I~~~~-~kkri~LGtFdt~EEAA~AYd~Aa~~~~G~~a~~NFp~~   78 (192)
                      +||||+++++|||+|+|+++. +++++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999999999999999875 558999999999999999999999999999999999954