Citrus Sinensis ID: 042824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET
Secondary Structure (PSIPRED)
ccccccHHHHHHHccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHccHHHHHHHHHHHHHHHHHHccHcccccHHHHHHHHHHHcHHccccccEEEEEcccccEEEEEEEcEEEEEEEcccccccc
Coil and Loop (DISEMBL)
yessyteasvlhdipvsIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLheefflpgevimEQGNVVDQLYFVCHGVleevgvgedgseet
Flexible Loop (DISEMBL)
yessyteasvlhdipvsiRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEevgvgedgseet
Low Complexity Region (SEG)
YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFvchgvleevgvgedgseeT
Disordered region (IsUnstruct)
*********VLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV********
Disordered Region (DISOPRED)
**SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEV**********
Disordered Region (DISEMBL)
********SVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV********
Disordered Region (DISPRO)
**SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.989	0.112	0.870	3e-44
Q653P0	858	Potassium channel KOR1 OS	yes	no	1.0	0.109	0.829	8e-42
Q94A76	820	Potassium channel GORK OS	no	no	1.0	0.114	0.712	1e-34
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.989	0.129	0.659	3e-32
Q9JJZ9	694	Cyclic nucleotide-gated c	yes	no	0.904	0.122	0.302	6e-10
Q9NQW8	809	Cyclic nucleotide-gated c	yes	no	0.904	0.105	0.290	1e-08
Q5JM04	502	Potassium channel KAT3 OS	no	no	0.914	0.171	0.344	2e-08
Q5QNI1	601	Potassium channel KAT2 OS	no	no	0.914	0.143	0.356	2e-08
Q8MJD7	782	Cyclic nucleotide-gated c	yes	no	0.904	0.108	0.290	3e-08
Q38898	802	Potassium channel AKT2/3	no	no	0.840	0.098	0.329	1e-07

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/93 (87%), Positives = 89/93 (95%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIPVSIRAKI+QTLY+PYIEKV LF+GCSSEFINQIV RLHEEFFLPG
Sbjct: 368 YESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           EVIMEQG+VVDQLYFVCHGVLEE+G+ +DGSEE
Sbjct: 428 EVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEE 460

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  168 bits (426), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 78/94 (82%), Positives = 83/94 (88%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEASVL DIPVSIRAKISQTLY PYIE + LFKGCS+EFI QIV RL EEFFLPG
Sbjct: 384 YESSYTEASVLQDIPVSIRAKISQTLYKPYIESIPLFKGCSAEFIQQIVIRLQEEFFLPG 443

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVI+EQG+ VDQLYFVCHG LE VG+GEDG EET
Sbjct: 444 EVILEQGSAVDQLYFVCHGALEGVGIGEDGQEET 477

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 78/94 (82%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           Y+S YT+  +L DIP SIRAKI+Q LY+PYI+KV LFKGCS+EFINQIV RLHEE+FLPG
Sbjct: 351 YDSHYTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPG 410

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVI EQGNVVD LYFVC G+LE +    DGSEE+
Sbjct: 411 EVITEQGNVVDHLYFVCEGLLEALVTKTDGSEES 444

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  136 bits (343), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/94 (65%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 1   YESSYTEASVL-HDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLP 59
           YESSYT   V+  DIPV++R+K+SQTLY+  + +V LF+GCS +F++QIV +LHEEFFLP
Sbjct: 347 YESSYTRDRVIVDDIPVAVRSKMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLP 406

Query: 60  GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           GEVI+EQG VVDQ+Y V HG LEEV  GEDGSEE
Sbjct: 407 GEVILEQGTVVDQIYIVAHGCLEEVANGEDGSEE 440

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9JJZ9|CNGB3_MOUSE Cyclic nucleotide-gated cation channel beta-3 OS=Mus musculus GN=Cngb3 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           E+++L ++P +++  I+  +    I+KV LFKGC ++ I  ++ RL    +LPG+ + ++
Sbjct: 487 ESNLLENLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKK 546

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSE 92
           G +  ++Y + HG ++ +G G DG++
Sbjct: 547 GEIGKEMYIIKHGEVQVLG-GPDGAQ 571

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones (By similarity). Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGA3.

Mus musculus (taxid: 10090)

>sp|Q9NQW8|CNGB3_HUMAN Cyclic nucleotide-gated cation channel beta-3 OS=Homo sapiens GN=CNGB3 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           E+ +L  +P +++  ++  +    I KV LFKGC ++ I  ++ RL    +LPG+ + ++
Sbjct: 495 ESDLLKTLPTTVQLALAIDVNFSIISKVDLFKGCDTQMIYDMLLRLKSVLYLPGDFVCKK 554

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSE 92
           G +  ++Y + HG ++ +G G DG++
Sbjct: 555 GEIGKEMYIIKHGEVQVLG-GPDGTK 579

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficiency of the channel when coexpressed with CNGA3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.

Homo sapiens (taxid: 9606)

>sp|Q5JM04|KAT3_ORYSJ Potassium channel KAT3 OS=Oryza sativa subsp. japonica GN=Os01g0756700 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           +   L  +P ++R+ IS  L+   ++   LFKG SS FI Q+VT +  E+F P E I+ Q
Sbjct: 352 QQETLDVLPKAMRSSISHYLFFRVVQGAYLFKGVSSRFIQQLVTEMQAEYFAPKEDIILQ 411

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSEE 93
            +    LY +  G + ++ V  DG+E+
Sbjct: 412 NDSPSDLYLLVSGAV-DILVFLDGTEQ 437

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QNI1|KAT2_ORYSJ Potassium channel KAT2 OS=Oryza sativa subsp. japonica GN=Os01g0210700 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           +   L  +P  IR+ I+  L++P IEKV LF G S   + Q+VT +  E++ P EV++ Q
Sbjct: 327 QKETLDSLPKGIRSSIACNLFLPVIEKVYLFHGVSFTCMIQLVTEMEAEYYPPREVVILQ 386

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSEE 93
                 +Y +  G +EE  V  DG+E+
Sbjct: 387 NEAPRDVYILVSGAVEE-RVEIDGTEK 412

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8MJD7|CNGB3_CANFA Cyclic nucleotide-gated cation channel beta-3 OS=Canis familiaris GN=CNGB3 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           E+ +L  +PV+++  ++  + +  I KV LFKGC ++ I  ++ RL    +LPG+ + ++
Sbjct: 490 ESDLLCTLPVTMQLALTVDVNLSIISKVELFKGCDTQMIYDMLLRLKSTVYLPGDFVCKK 549

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSE 92
           G +  ++Y +  G ++ +G G DG++
Sbjct: 550 GEIGKEMYIIKQGEVQVLG-GSDGAQ 574

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGA3. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.

Canis familiaris (taxid: 9615)

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 4   SYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVI 63
           S  +  ++  +P SI   I Q L++P +EKV LFKG S E +  +V+++  E+  P E +
Sbjct: 362 SLNQQHLIDQLPKSIYKSICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAEYIPPREDV 421

Query: 64  MEQGNVVDQLYFVCHGVLE 82
           + Q    D +Y +  G +E
Sbjct: 422 IMQNEAPDDVYIIVSGEVE 440

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
356499077	849	PREDICTED: potassium channel SKOR-like [	1.0	0.110	0.914	1e-45
398025455	849	potassium channel SKOR, partial [Alterna	1.0	0.110	0.893	1e-44
356552003	850	PREDICTED: potassium channel SKOR-like [	1.0	0.110	0.904	1e-44
3641845	828	stelar K+ outward rectifying channel [Ar	0.989	0.112	0.870	9e-43
3810676	828	SKOR [Arabidopsis thaliana]	0.989	0.112	0.870	1e-42
15232991	828	Potassium channel SKOR [Arabidopsis thal	0.989	0.112	0.870	1e-42
224065090	841	predicted protein [Populus trichocarpa]	1.0	0.111	0.861	1e-42
449445216	828	PREDICTED: potassium channel SKOR-like [	1.0	0.113	0.851	3e-42
449479935	828	PREDICTED: potassium channel SKOR-like [	1.0	0.113	0.851	3e-42
224079588	821	predicted protein [Populus trichocarpa]	1.0	0.114	0.851	4e-41

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/94 (91%), Positives = 91/94 (96%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEASV+ DIP+SIRAKISQTLY+PYIEKVSLFKGCSSEFINQIV RLHEEFFLPG
Sbjct: 391 YESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPG 450

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEEVG+ EDG+EET
Sbjct: 451 EVIMEQGNVVDQLYFVCHGVLEEVGIAEDGTEET 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|398025455|gb|AFO70199.1| potassium channel SKOR, partial [Alternanthera philoxeroides]

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/94 (89%), Positives = 90/94 (95%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEASVL DIPVS+RAKISQTLYMPYIEK SLF GCSSEFINQIV R+HEEFFLPG
Sbjct: 389 YESSYTEASVLQDIPVSLRAKISQTLYMPYIEKASLFSGCSSEFINQIVIRVHEEFFLPG 448

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVI+EQGNVVDQLYFVCHG+LEE+GVGEDGSE+T
Sbjct: 449 EVILEQGNVVDQLYFVCHGMLEEIGVGEDGSEQT 482

Source: Alternanthera philoxeroides

Species: Alternanthera philoxeroides

Genus: Alternanthera

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/94 (90%), Positives = 89/94 (94%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEASV+ DIP+SIRAKISQTLY+PYIEKVSLFKGCSSEFI QIV RLHEEFFLPG
Sbjct: 392 YESSYTEASVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFIRQIVIRLHEEFFLPG 451

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEEVG  EDG+EET
Sbjct: 452 EVIMEQGNVVDQLYFVCHGVLEEVGTAEDGTEET 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3641845|emb|CAA11281.1| stelar K+ outward rectifying channel [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 81/93 (87%), Positives = 89/93 (95%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIPVSIRAKI+QTLY+PYIEKV LF+GCSSEFINQIV RLHEEFFLPG
Sbjct: 368 YESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           EVIMEQG+VVDQLYFVCHGVLEE+G+ +DGSEE
Sbjct: 428 EVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEE 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3810676|emb|CAA11280.1| SKOR [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/93 (87%), Positives = 89/93 (95%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIPVSIRAKI+QTLY+PYIEKV LF+GCSSEFINQIV RLHEEFFLPG
Sbjct: 368 YESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           EVIMEQG+VVDQLYFVCHGVLEE+G+ +DGSEE
Sbjct: 428 EVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEE 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232991|ref|NP_186934.1| Potassium channel SKOR [Arabidopsis thaliana] gi|44888539|sp|Q9M8S6.1|SKOR_ARATH RecName: Full=Potassium channel SKOR; AltName: Full=Stelar K(+) outward rectifying channel gi|6728977|gb|AAF26975.1|AC018363_20 stelar K+ outward rectifying channel (SKOR) [Arabidopsis thaliana] gi|332640345|gb|AEE73866.1| Potassium channel SKOR [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/93 (87%), Positives = 89/93 (95%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIPVSIRAKI+QTLY+PYIEKV LF+GCSSEFINQIV RLHEEFFLPG
Sbjct: 368 YESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           EVIMEQG+VVDQLYFVCHGVLEE+G+ +DGSEE
Sbjct: 428 EVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEE 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/94 (86%), Positives = 87/94 (92%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEAS L D+P+SIRAK+SQTLY  YIEKV L KGCS+EFINQIV RLHEEFFLPG
Sbjct: 377 YESSYTEASALQDLPISIRAKVSQTLYTEYIEKVPLLKGCSAEFINQIVIRLHEEFFLPG 436

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEEVG+G+DGSEET
Sbjct: 437 EVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEET 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/94 (85%), Positives = 89/94 (94%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIP+SIRAKISQTLY+PY++ VSLF+GCS EFINQIV RLHEEFFLPG
Sbjct: 367 YESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPG 426

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEE+G+G+D SEET
Sbjct: 427 EVIMEQGNVVDQLYFVCHGVLEELGIGQDSSEET 460

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/94 (85%), Positives = 89/94 (94%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           YESSYTEA+VL DIP+SIRAKISQTLY+PY++ VSLF+GCS EFINQIV RLHEEFFLPG
Sbjct: 367 YESSYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPG 426

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEE+G+G+D SEET
Sbjct: 427 EVIMEQGNVVDQLYFVCHGVLEELGIGQDSSEET 460

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/94 (85%), Positives = 86/94 (91%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           +ESSYTEAS L D+P+SIRAKISQTLY  YIEKV L K CS+EFINQIV RLHEEFFLPG
Sbjct: 365 HESSYTEASALQDLPISIRAKISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLPG 424

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
           EVIMEQGNVVDQLYFVCHGVLEEVG+G+DGSEET
Sbjct: 425 EVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEET 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.797	0.090	0.893	1.3e-30
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.797	0.091	0.76	7.1e-26
UNIPROTKB|F1N9W7	530	F1N9W7 "Uncharacterized protei	0.734	0.130	0.333	2.2e-07
MGI|MGI:1353562	694	Cngb3 "cyclic nucleotide gated	0.723	0.097	0.294	8.4e-07
UNIPROTKB|F1MM42	575	CNGA4 "Uncharacterized protein	0.723	0.118	0.235	1.4e-06
UNIPROTKB|F1LX27	586	Cngb3 "Protein Cngb3" [Rattus	0.723	0.116	0.279	2.3e-06
ZFIN|ZDB-GENE-070912-292	648	cnga4 "cyclic nucleotide gated	0.723	0.104	0.25	3.4e-06
UNIPROTKB|F1MBN0	663	CNGA2 "Cyclic nucleotide-gated	0.776	0.110	0.273	3.5e-06
UNIPROTKB|Q03041	663	CNGA2 "Cyclic nucleotide-gated	0.776	0.110	0.273	3.5e-06
UNIPROTKB|F1S2D4	663	CNGA2 "Uncharacterized protein	0.776	0.110	0.273	3.5e-06

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 67/75 (89%), Positives = 72/75 (96%)

Query:     1 YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
             YESSYTEA+VL DIPVSIRAKI+QTLY+PYIEKV LF+GCSSEFINQIV RLHEEFFLPG
Sbjct:   368 YESSYTEAAVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPG 427

Query:    61 EVIMEQGNVVDQLYF 75
             EVIMEQG+VVDQLYF
Sbjct:   428 EVIMEQGSVVDQLYF 442

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 7.1e-26, P = 7.1e-26
 Identities = 57/75 (76%), Positives = 65/75 (86%)

Query:     1 YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
             Y+S YT+  +L DIP SIRAKI+Q LY+PYI+KV LFKGCS+EFINQIV RLHEE+FLPG
Sbjct:   351 YDSHYTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPG 410

Query:    61 EVIMEQGNVVDQLYF 75
             EVI EQGNVVD LYF
Sbjct:   411 EVITEQGNVVDHLYF 425

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1N9W7 F1N9W7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query:     7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
             E  VL  +P  +RA+++ ++++P + KV+LF+ C    +  +V RL  + F PGE +  +
Sbjct:   291 EHVVLRHLPERLRAEVAASVHLPALSKVALFQSCERGVLEALVLRLRPQVFGPGEFVCRR 350

Query:    67 GNVVDQLYF 75
             G+V  ++YF
Sbjct:   351 GDVGREMYF 359

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

MGI|MGI:1353562 Cngb3 "cyclic nucleotide gated channel beta 3" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 20/68 (29%), Positives = 43/68 (63%)

Query:     7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
             E+++L ++P +++  I+  +    I+KV LFKGC ++ I  ++ RL    +LPG+ + ++
Sbjct:   487 ESNLLENLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKK 546

Query:    67 GNVVDQLY 74
             G +  ++Y
Sbjct:   547 GEIGKEMY 554

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IC

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IPI

GO:0007601 "visual perception" evidence=IEA

GO:0009187 "cyclic nucleotide metabolic process" evidence=IC

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030553 "cGMP binding" evidence=IC

GO:0034220 "ion transmembrane transport" evidence=IPI

GO:0050896 "response to stimulus" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1MM42 CNGA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 16/68 (23%), Positives = 44/68 (64%)

Query:     7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
             E ++L  +P  +RA+++ ++++P + +V +F+ C +  + ++V +L  + + PGE +  +
Sbjct:   319 EVAILQHLPERLRAEVAVSVHLPTLSRVQIFQNCEASLLEELVLKLQPQTYSPGEYVCRK 378

Query:    67 GNVVDQLY 74
             G++  ++Y
Sbjct:   379 GDIGREMY 386

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

UNIPROTKB|F1LX27 Cngb3 "Protein Cngb3" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 19/68 (27%), Positives = 42/68 (61%)

Query:     7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
             E+++L  +P +++  ++  +    I+KV LFKGC ++ I  ++ RL    +LPG+ + ++
Sbjct:   379 ESNLLETLPTAMQLSVAIDINFNIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKK 438

Query:    67 GNVVDQLY 74
             G +  ++Y
Sbjct:   439 GEIGKEMY 446

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-292 cnga4 "cyclic nucleotide gated channel alpha 4" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 17/68 (25%), Positives = 44/68 (64%)

Query:     7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
             E  +L  +P++++   + ++++P + KV++F+ C +  + Q+V +L  + + PGE + ++
Sbjct:   338 ENEILQHLPMTLQTATAVSVHLPTLSKVTIFQNCENSLLEQLVLKLTPQVYSPGEYVCKK 397

Query:    67 GNVVDQLY 74
             G+V  ++Y
Sbjct:   398 GDVGHEMY 405

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 20/73 (27%), Positives = 45/73 (61%)

Query:     2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGE 61
             + S  E  VL ++P  +RA+I+  +++  ++KV +F+ C +  + ++V +L  + F PG+
Sbjct:   420 KKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGD 479

Query:    62 VIMEQGNVVDQLY 74
              I  +G++  ++Y
Sbjct:   480 YICRKGDIGKEMY 492

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q03041 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 20/73 (27%), Positives = 45/73 (61%)

Query:     2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGE 61
             + S  E  VL ++P  +RA+I+  +++  ++KV +F+ C +  + ++V +L  + F PG+
Sbjct:   420 KKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGD 479

Query:    62 VIMEQGNVVDQLY 74
              I  +G++  ++Y
Sbjct:   480 YICRKGDIGKEMY 492

GO:0007608 "sensory perception of smell" evidence=ISS

GO:0005216 "ion channel activity" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S2D4 CNGA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 20/73 (27%), Positives = 45/73 (61%)

Query:     2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGE 61
             + S  E  VL ++P  +RA+I+  +++  ++KV +F+ C +  + ++V +L  + F PG+
Sbjct:   419 KKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRPQVFSPGD 478

Query:    62 VIMEQGNVVDQLY 74
              I  +G++  ++Y
Sbjct:   479 YICRKGDIGKEMY 491

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8S6	SKOR_ARATH	No assigned EC number	0.8709	0.9893	0.1123	yes	no
Q653P0	KOR1_ORYSJ	No assigned EC number	0.8297	1.0	0.1095	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	1e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-09
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	4e-08
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	8e-05
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	1e-04

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 55.4 bits (134), Expect = 1e-11
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 36 LFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
          LF G   E + ++   L E  F  GEVI+ QG+  D LY V  G +E   + EDG E+ 
Sbjct: 1  LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI 59

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query: 4   SYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVI 63
           S  +  ++  +P SI   I Q L++P +EKV LFKG S E +  +VT++  E+  P E +
Sbjct: 349 SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDV 408

Query: 64  MEQGNVVDQLYFVCHGVLE 82
           + Q    D +Y V  G +E
Sbjct: 409 IMQNEAPDDVYIVVSGEVE 427

Length = 823

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 36 LFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92
          LFK   +E + ++   L    +  GEVI+ QG+V D  Y +  G +E   V EDG E
Sbjct: 1  LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEE 57

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 54 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
             F  GEVI  +G+  D LY V  G ++   + EDG E+ 
Sbjct: 1  LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQI 41

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89
           +++  L     SE +  +  +L       GEV+  +G   D LY +  G+++     ED
Sbjct: 1  ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 90 GSE 92
          G E
Sbjct: 61 GRE 63

Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG0498	727	consensus K+-channel ERG and related proteins, con	99.84
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	99.66
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.62
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	99.44
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	99.34
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.23
PLN02868	413	acyl-CoA thioesterase family protein	99.19
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.17
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.16
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.1
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.09
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.03
KOG1113	368	consensus cAMP-dependent protein kinase types I an	98.91
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	98.82
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	98.81
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	98.66
COG2905	610	Predicted signal-transduction protein containing c	98.65
PRK09391	230	fixK transcriptional regulator FixK; Provisional	98.62
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	98.57
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.56
KOG1113	368	consensus cAMP-dependent protein kinase types I an	98.51
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	98.14
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	97.5
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	97.03
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	95.75
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	95.71
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	89.85
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	89.38
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	81.91

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.84  E-value=1.5e-20  Score=131.60  Aligned_cols=87  Identities=30%  Similarity=0.658  Sum_probs=84.3

Q ss_pred             CcccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEE
Q 042824            2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVL   81 (94)
Q Consensus         2 ~~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v   81 (94)
                      ++|+||+++|..+|+.||.++.++++.++++++|+|+++++.++..|+.+++...|.||++|+++||+++.||||.+|.+
T Consensus       392 t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~l  471 (727)
T KOG0498|consen  392 TRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSL  471 (727)
T ss_pred             ccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCC
Q 042824           82 EEVGVGE   88 (94)
Q Consensus        82 ~v~~~~~   88 (94)
                      +++..+.
T Consensus       472 e~~~~~~  478 (727)
T KOG0498|consen  472 ESITTDG  478 (727)
T ss_pred             EEEEccC
Confidence            9998653

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=7.3e-16  Score=103.50  Aligned_cols=82  Identities=28%  Similarity=0.558  Sum_probs=80.0

Q ss_pred             ccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEE
Q 042824            4 SYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE   83 (94)
Q Consensus         4 ~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v   83 (94)
                      ..||+++++.||+.|+.+++.+++...|+++++|....+.++..++..+++..|.|||+||++||.++.||+|..|.+.|
T Consensus       282 ~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~V  361 (536)
T KOG0500|consen  282 IVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAV  361 (536)
T ss_pred             cccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 042824           84 VG   85 (94)
Q Consensus        84 ~~   85 (94)
                      ..
T Consensus       362 v~  363 (536)
T KOG0500|consen  362 VA  363 (536)
T ss_pred             Ee
Confidence            97

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.62  E-value=4.7e-15  Score=106.54  Aligned_cols=88  Identities=34%  Similarity=0.595  Sum_probs=82.0

Q ss_pred             ccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEE
Q 042824            4 SYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE   83 (94)
Q Consensus         4 ~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v   83 (94)
                      +.+++++++.+|+.||.++..+++.+.++++++|+++++.++..++..++.+.|.|||.|+.+|+.++.+|||.+|.|++
T Consensus       349 ~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i  428 (823)
T PLN03192        349 SLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEI  428 (823)
T ss_pred             cccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEE
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCc
Q 042824           84 VGVGEDGSE   92 (94)
Q Consensus        84 ~~~~~~g~e   92 (94)
                      +. ..+|++
T Consensus       429 ~~-~~~~~e  436 (823)
T PLN03192        429 ID-SEGEKE  436 (823)
T ss_pred             EE-ecCCcc
Confidence            86 345554

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.44  E-value=8.5e-14  Score=95.75  Aligned_cols=88  Identities=26%  Similarity=0.683  Sum_probs=83.5

Q ss_pred             cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824            3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE   82 (94)
Q Consensus         3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~   82 (94)
                      +..||.+++..||..||.+++.+++-..|..+.+|.++++..+..++.++..+.|-|||+||+.|+.+..||+|..|.|.
T Consensus       501 r~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQ  580 (815)
T KOG0499|consen  501 RMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQ  580 (815)
T ss_pred             ccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCC
Q 042824           83 EVGVGEDGS   91 (94)
Q Consensus        83 v~~~~~~g~   91 (94)
                      |.- +++|+
T Consensus       581 VlG-Gp~~~  588 (815)
T KOG0499|consen  581 VLG-GPDGT  588 (815)
T ss_pred             Eec-CCCCC
Confidence            996 56665

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1.1e-12  Score=90.59  Aligned_cols=86  Identities=22%  Similarity=0.361  Sum_probs=82.7

Q ss_pred             CcccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEE
Q 042824            2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVL   81 (94)
Q Consensus         2 ~~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v   81 (94)
                      .+|+|++++|..+|+-+|.++.-+++.+.....|.|+-.++.+++.++-.++..+..|||.+++.|+..+.++||++|++
T Consensus       521 tkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSL  600 (971)
T KOG0501|consen  521 TKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSL  600 (971)
T ss_pred             hcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecce
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q 042824           82 EEVGVG   87 (94)
Q Consensus        82 ~v~~~~   87 (94)
                      +|+..+
T Consensus       601 EVIQDD  606 (971)
T KOG0501|consen  601 EVIQDD  606 (971)
T ss_pred             EEeecC
Confidence            999743

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.23  E-value=4.1e-11  Score=75.15  Aligned_cols=64  Identities=19%  Similarity=0.396  Sum_probs=58.7

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      ..+++.+|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++... +|++
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~   69 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRE   69 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCce
Confidence            457889999999999999999999999999999999999999999999999999999864 5544

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.19  E-value=1.2e-10  Score=78.51  Aligned_cols=63  Identities=24%  Similarity=0.425  Sum_probs=59.3

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG   90 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g   90 (94)
                      ..++.++++|+++++..+..++..++.+.|++|++|+++|+..+.+|+|.+|.++++..+.+|
T Consensus         7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g   69 (413)
T PLN02868          7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE   69 (413)
T ss_pred             HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC
Confidence            456789999999999999999999999999999999999999999999999999999987776

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.17  E-value=1.9e-10  Score=63.84  Aligned_cols=57  Identities=35%  Similarity=0.543  Sum_probs=53.0

Q ss_pred             CCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           36 LFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        36 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      +|.++++..+..++..++.+.+.+|++|+++|+..+.+|+|.+|.++++..+.+|++
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~   57 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE   57 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce
Confidence            578899999999999999999999999999999999999999999999987777764

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.16  E-value=2.4e-10  Score=63.18  Aligned_cols=58  Identities=40%  Similarity=0.651  Sum_probs=53.7

Q ss_pred             CCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           36 LFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        36 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +|..+++..+..++..++...+.+|+.|+.+|+..+++|+|.+|.++++..+++|++.
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~   58 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQ   58 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEE
Confidence            5788999999999999999999999999999999999999999999999988877653

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=3.6e-10  Score=77.61  Aligned_cols=65  Identities=28%  Similarity=0.552  Sum_probs=60.5

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED   89 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~   89 (94)
                      ..+.++|+++|+|.+++++.+..++..++...|..|+.|+++|+.++.||+|..|+|.+...++.
T Consensus       268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~  332 (732)
T KOG0614|consen  268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEG  332 (732)
T ss_pred             HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCC
Confidence            35678999999999999999999999999999999999999999999999999999999986543

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.09  E-value=4.3e-10  Score=70.45  Aligned_cols=63  Identities=16%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             hhcCcCCCCCCHHHHHHHHhhccc-ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           31 IEKVSLFKGCSSEFINQIVTRLHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        31 l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +++.+.|..+++..+..+...... ..|++|+.|+++|+..+++|+|.+|.++++..+++|++.
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~   78 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ   78 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEE
Confidence            445556667999999999988754 679999999999999999999999999999998899875

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.03  E-value=1.2e-09  Score=67.25  Aligned_cols=57  Identities=16%  Similarity=0.299  Sum_probs=52.8

Q ss_pred             CCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           37 FKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        37 f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      -+.+++..+..++..++.+.|++|++|+.+|+..+.+|+|.+|.++++..+.+|++.
T Consensus         5 ~~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~   61 (211)
T PRK11753          5 GKPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEM   61 (211)
T ss_pred             cCCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence            356899999999999999999999999999999999999999999999888888764

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=6.6e-09  Score=68.12  Aligned_cols=60  Identities=22%  Similarity=0.347  Sum_probs=56.6

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      ...++++.-+|.+++++.+..++..|..+.+..|+.|+.+|+.++.||+|.+|+++|+..
T Consensus       120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~  179 (368)
T KOG1113|consen  120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN  179 (368)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC
Confidence            456788899999999999999999999999999999999999999999999999999984

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=98.82  E-value=8.2e-09  Score=64.56  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             HHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           45 INQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        45 ~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ...+.+.++.+.|++|++|+.+|+..+++|+|.+|.++++..+.+|++.
T Consensus        24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~   72 (226)
T PRK10402         24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVS   72 (226)
T ss_pred             CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEe
Confidence            3357777888999999999999999999999999999999998899875

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=98.81  E-value=1.8e-08  Score=61.46  Aligned_cols=62  Identities=26%  Similarity=0.435  Sum_probs=53.8

Q ss_pred             hcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           32 EKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        32 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ...+.|..++......+......+.+++|+.|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~   64 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI   64 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE
Confidence            34566776777777777788899999999999999999999999999999999999888764

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=98.66  E-value=5e-08  Score=59.76  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=39.0

Q ss_pred             hcccceeccCCeEEecCC--ccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           51 RLHEEFFLPGEVIMEQGN--VVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        51 ~~~~~~~~~ge~i~~~g~--~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++...|++|++|+++|+  ..+++|+|.+|.++++..+++|++.
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~   49 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNAL   49 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEE
Confidence            356688999999999999  7799999999999999999999875

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-07  Score=65.79  Aligned_cols=59  Identities=24%  Similarity=0.435  Sum_probs=56.3

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      -.+++...|.|..++++.+..|...+....|.+||+|+..|.+..++|+|.+|.|+++.
T Consensus         5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~   63 (610)
T COG2905           5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS   63 (610)
T ss_pred             HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc
Confidence            35788999999999999999999999999999999999999999999999999999987

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=98.62  E-value=5.9e-08  Score=60.91  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=41.9

Q ss_pred             HHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           47 QIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        47 ~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++....+...|++|++|+.+|+.++++|+|.+|.++++..+++|++.
T Consensus        33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~   79 (230)
T PRK09391         33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQ   79 (230)
T ss_pred             cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEE
Confidence            34556677899999999999999999999999999999998899864

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=98.57  E-value=1.6e-07  Score=50.16  Aligned_cols=38  Identities=34%  Similarity=0.659  Sum_probs=35.2

Q ss_pred             ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      +.|++|++|+++|+..+.+|+|.+|.++++..+.+|+.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~   39 (91)
T PF00027_consen    2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKE   39 (91)
T ss_dssp             EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEE
T ss_pred             eEECCCCEEEeCCCcCCEEEEEEECceEEEeceeccee
Confidence            57999999999999999999999999999998887764

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.56  E-value=1.2e-07  Score=65.60  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             hCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        13 ~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .+|..-++.-...+....+....|+++++...+..++..|-+..|.+|.+|+++|+.++.+|++..|.+.|.+
T Consensus       138 ~l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~  210 (732)
T KOG0614|consen  138 TLPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR  210 (732)
T ss_pred             ccccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee
Confidence            3555566566677778889999999999999999999999999999999999999999999999999999997

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=98.51  E-value=1.2e-07  Score=62.42  Aligned_cols=64  Identities=17%  Similarity=0.394  Sum_probs=59.5

Q ss_pred             HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeC
Q 042824           24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG   87 (94)
Q Consensus        24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~   87 (94)
                      ..++..+|+++|++..+.......++..+....|.+|+.|+++|+.++.||+|.+|.|.+....
T Consensus       235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~  298 (368)
T KOG1113|consen  235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR  298 (368)
T ss_pred             hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc
Confidence            3457788999999999999999999999999999999999999999999999999999998754

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=98.14  E-value=4e-06  Score=50.88  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=31.9

Q ss_pred             CCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           60 GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        60 ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      |+.|+++|+..+++|+|.+|.|+++..+++|++.
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~   34 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEI   34 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEe
Confidence            6889999999999999999999999999999875

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=97.50  E-value=0.00023  Score=51.20  Aligned_cols=66  Identities=14%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhccc-ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      ....+++...|-|.+++-...+.+|..|.. +.-.+|.+|+..|+..++.++|+.|.|++..  ++|+-
T Consensus       277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~  343 (1283)
T KOG3542|consen  277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR  343 (1283)
T ss_pred             HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce
Confidence            456788899999999999999999888755 3458999999999999999999999999998  56654

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=97.03  E-value=0.00053  Score=49.45  Aligned_cols=56  Identities=11%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEE
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEV   84 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~   84 (94)
                      ..|.+...|.++-...++.++.......++...++|+.|+.+...|++++|.|-+-
T Consensus        37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~   92 (1283)
T KOG3542|consen   37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE   92 (1283)
T ss_pred             HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee
Confidence            35677889999999999999999999999999999999999999999999997654

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=95.75  E-value=0.022  Score=42.51  Aligned_cols=44  Identities=25%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             hhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           50 TRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        50 ~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++....+..|+++++.|++.+.+|.+.+|..++...+.+|+++
T Consensus       113 rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~  156 (1158)
T KOG2968|consen  113 RHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY  156 (1158)
T ss_pred             hhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee
Confidence            67777889999999999999999999999999999988888764

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=95.71  E-value=0.0074  Score=44.87  Aligned_cols=47  Identities=26%  Similarity=0.393  Sum_probs=37.3

Q ss_pred             HHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824           45 INQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS   91 (94)
Q Consensus        45 ~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~   91 (94)
                      +..+--.+...+..+|+.++++||..+.+|+|++|+++.......|+
T Consensus       501 lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k  547 (1158)
T KOG2968|consen  501 LRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGK  547 (1158)
T ss_pred             HhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCcc
Confidence            33444445667889999999999999999999999999887644443

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=89.85  E-value=2.1  Score=25.64  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHHhh-cccceeccCCeEEecCC-ccCeEEEEeccEEEEEe
Q 042824           39 GCSSEFINQIVTR-LHEEFFLPGEVIMEQGN-VVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        39 ~l~~~~~~~l~~~-~~~~~~~~ge~i~~~g~-~~~~~y~i~~G~v~v~~   85 (94)
                      +++....+.++.. .+.....+|+.-..+|. +.+.+-++++|++.|+.
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~   62 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC   62 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE
Confidence            4678888888777 56678899998776665 45689999999999987

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=89.38  E-value=1.9  Score=27.14  Aligned_cols=41  Identities=7%  Similarity=-0.001  Sum_probs=31.2

Q ss_pred             HHHHHhhcccceeccCCeE-EecCCccCeEEEEeccEEEEEe
Q 042824           45 INQIVTRLHEEFFLPGEVI-MEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        45 ~~~l~~~~~~~~~~~ge~i-~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      ...+....+...+++|..+ +........++++.+|.+.+.+
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr   56 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR   56 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe
Confidence            4456666777889999986 5555555789999999999943

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=81.91  E-value=2.7  Score=20.84  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=22.7

Q ss_pred             ceeccCCeEEecCCccC-eEEEEeccEEEEEe
Q 042824           55 EFFLPGEVIMEQGNVVD-QLYFVCHGVLEEVG   85 (94)
Q Consensus        55 ~~~~~ge~i~~~g~~~~-~~y~i~~G~v~v~~   85 (94)
                      ..++||...-..-.... .+++|++|.+.+..
T Consensus         3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~   34 (71)
T PF07883_consen    3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV   34 (71)
T ss_dssp             EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred             EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence            35677776555555555 89999999998884

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
2ptm_A	198	Structure And Rearrangements In The Carboxy-Termina		2e-04
3bpz_A	202	Hcn2-I 443-460 E502k In The Presence Of Camp Length		3e-04
3u11_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		7e-04

>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 5   YTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIM 64
           + E  +  ++  SIR  ++       +  V  F G  S F+ ++VT L  E F P + ++
Sbjct: 47  FDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVI 106
Query: 65  EQGNVVDQLYF 75
           ++G   D+++F
Sbjct: 107 QEGTFGDRMFF 117

>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 5   YTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIM 64
           + E S+L ++   +R KI        +  + LF      F+  ++T+L  E F PG+ I+
Sbjct: 48  FDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYII 107
Query: 65  EQGNVVDQLYF 75
            +G +  ++YF
Sbjct: 108 REGTIGKKMYF 118

>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 5   YTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIM 64
           + E S+L ++   +R +I        +  + LF      F+  ++T+L  E F PG+ I+
Sbjct: 51  FDEESILGELSEPLREEIINFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYII 110
Query: 65  EQGNVVDQLYF 75
            +G +  ++YF
Sbjct: 111 REGTIGKKMYF 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	4e-29
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	1e-27
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-26
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	9e-24
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	4e-16
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	6e-13
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	1e-12
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	5e-10
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	1e-09
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-09
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-08
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	3e-09
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	7e-09
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	6e-08
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-09
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-08
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	8e-09
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	9e-09
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	2e-08
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-06
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	3e-08
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	4e-08
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	7e-08
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	8e-08
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	2e-06
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	8e-08
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	1e-07
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	1e-07
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	2e-07
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	2e-07
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	3e-07
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	3e-07
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	5e-07
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	9e-07
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	2e-06
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	4e-06
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	5e-06
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	6e-06
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	6e-06
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	1e-05
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	2e-05
1ft9_A	222	Carbon monoxide oxidation system transcription reg	6e-05

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  100 bits (252), Expect = 4e-29
 Identities = 23/85 (27%), Positives = 33/85 (38%)

Query: 4  SYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVI 63
          S+    VL   P  +RA I   L     ++   F+  S   +  +          PG++I
Sbjct: 2  SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61

Query: 64 MEQGNVVDQLYFVCHGVLEEVGVGE 88
             G  VD L FV  G LE +   E
Sbjct: 62 YHAGESVDSLCFVVSGSLEVIQDDE 86

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 98.1 bits (245), Expect = 1e-27
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
           E  +  ++  SIR  ++       +  V  F G  S F+ ++VT L  E F P + ++++
Sbjct: 49  ERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQE 108

Query: 67  GNVVDQLYFVCHGVLEEVGVGEDGSE 92
           G   D+++F+  G+++   +  DG  
Sbjct: 109 GTFGDRMFFIQQGIVDI--IMSDGVI 132

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 23/84 (27%), Positives = 43/84 (51%)

Query: 5   YTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIM 64
           + E S+L ++   +R KI        +  + LF      F+  ++T+L  E F PG+ I+
Sbjct: 48  FDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYII 107

Query: 65  EQGNVVDQLYFVCHGVLEEVGVGE 88
            +G +  ++YF+ HGV+  +  G 
Sbjct: 108 REGTIGKKMYFIQHGVVSVLTKGN 131

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score = 88.6 bits (220), Expect = 9e-24
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 7   EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQ 66
            + +L D P  +RA I+  L    + ++ LF+  S   +  +   +   F  PGE ++ Q
Sbjct: 54  VSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQ 112

Query: 67  GNVVDQLYFVCHGVLEEVGVGE 88
           G+ +  +YFVC G +E +    
Sbjct: 113 GDALQAIYFVCSGSMEVLKDNT 134

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 67.5 bits (165), Expect = 4e-16
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          + +V LF+      ++ I  RL    F     ++ +G+ V+++ F+  G LE V      
Sbjct: 8  VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 91 SEET 94
          S   
Sbjct: 68 SGFY 71

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 59.7 bits (145), Expect = 6e-13
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 31  IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G   ++ V  DG
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF-DIYVKCDG 98

Query: 91  SEET 94
               
Sbjct: 99  VGRC 102

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 58.1 bits (141), Expect = 1e-12
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          +  V LF+      + +IV  L       G VI   G   D+++FV  G + 
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVS 64

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 12/94 (12%), Positives = 33/94 (35%)

Query: 1   YESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPG 60
           +  +     +  D+     A       +  + K+ LF   S+E +  + + +        
Sbjct: 11  HHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRD 70

Query: 61  EVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET 94
             ++ +G+  D L  +  G +  +    +   +T
Sbjct: 71  CQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQT 104

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 14/70 (20%), Positives = 29/70 (41%)

Query: 13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQ 72
           +P   ++  S+ L    I      K      I +IV  ++   +     I+++G+V   
Sbjct: 7  TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSL 66

Query: 73 LYFVCHGVLE 82
          +Y +  G +E
Sbjct: 67 VYVMEDGKVE 76

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 27  YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86
           Y   ++ + + K  ++    ++   L  + + PGE I+ +G+  +  Y + +G    V V
Sbjct: 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG---AVDV 179

Query: 87  GEDGSEE 93
            + G   
Sbjct: 180 SKKGQGV 186

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          I    LF    S+    ++  L E+    G  I++QG+  D  Y V  G ++
Sbjct: 9  IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD 60

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G ++
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 91

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 14/68 (20%), Positives = 28/68 (41%)

Query: 27  YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86
           YM +++ V  F+    E ++++   L E  +  GE I+ QG   D  + +  G +     
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214

Query: 87  GEDGSEET 94
                +  
Sbjct: 215 DSPNEDPV 222

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          I      K      I +IV  ++   +     I+++G+V   +Y +  G +E
Sbjct: 41 ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE 92

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 27  YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86
           Y  +IE +   K        ++V  +  + +  GE I+ QG++ D  + V  G ++    
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 87  GEDGSEE 93
            +  SE 
Sbjct: 325 RKGKSEV 331

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 31  IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G   ++ V  DG
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGT-FDIYVKCDG 205

Query: 91  SEET 94
               
Sbjct: 206 VGRC 209

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          + +  LF     E   ++   + E     G+ +  +G+  D+LY V  G ++      DG
Sbjct: 7  LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 91 SE 92
           E
Sbjct: 67 RE 68

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 49.7 bits (118), Expect = 9e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86
           +  +  + +F+GC +E +  +   +       G+V++ QG        +  G  E   V
Sbjct: 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHV 70

Query: 87 GEDGSEE 93
          G+DG   
Sbjct: 71 GDDGVAI 77

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 27  YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 86
           Y  ++ KVS+ +         +   L    F  G+ I+ QG   D+ + +  G    +  
Sbjct: 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQR 214

Query: 87  GEDGSEET 94
             +  E  
Sbjct: 215 RSENEEFV 222

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G ++
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 92

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 87
          +  +++  LF+    + + + +  + E  F P E+++EQ    + L+ V  GV+    V 
Sbjct: 5  LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 88 EDGSE 92
            G E
Sbjct: 65 LGGRE 69

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 46.5 bits (111), Expect = 4e-08
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG---VLEEVGV 86
           +     F   + E +  I     E+ F  G VI ++ +  D L  +  G   +    G 
Sbjct: 7  RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGG 66

Query: 87 GEDGSEET 94
              +  T
Sbjct: 67 AGSAANST 74

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 46.1 bits (110), Expect = 7e-08
 Identities = 10/64 (15%), Positives = 25/64 (39%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 14 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 91 SEET 94
           E+ 
Sbjct: 74 QEKI 77

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 47.0 bits (111), Expect = 8e-08
 Identities = 15/71 (21%), Positives = 25/71 (35%)

Query: 24  QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE 83
           + +Y  ++ KVS+ +         +   L    F  GE I+ QG   D  Y +  G    
Sbjct: 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASV 302

Query: 84  VGVGEDGSEET 94
           +       E  
Sbjct: 303 LQRRSPNEEYV 313

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 31  IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
           I K  LF        + I   +     + GE +++QGN  D  Y V  G ++
Sbjct: 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVD 183

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 47.2 bits (111), Expect = 8e-08
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 3   SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEV 62
            S  E     D     R+     +    ++ V  F+      + QI    + E    G  
Sbjct: 16  QSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGIT 75

Query: 63  IMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE 93
           +  QG++    Y V  G L +V V E  S +
Sbjct: 76  LFRQGDIGTNWYAVLAGSL-DVKVSETSSHQ 105

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 13/65 (20%), Positives = 27/65 (41%)

Query: 28  MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 87
           M  I  + L K  +   +   ++  H   +     ++ QG   + LY++  G +  +   
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 88  EDGSE 92
           E+G E
Sbjct: 105 EEGKE 109

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 10/62 (16%), Positives = 24/62 (38%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          ++   LF+  S   + +++          G  +  QG      Y++  G ++   +  +G
Sbjct: 11 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 91 SE 92
           E
Sbjct: 71 QE 72

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  G ++      D
Sbjct: 7  ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 90 GSE 92
          G E
Sbjct: 67 GRE 69

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          ++   LF G + E ++  ++      +  G+ I  QG++   LY V  G +        G
Sbjct: 1  MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 91 SEET 94
           E T
Sbjct: 61 QERT 64

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 9/62 (14%), Positives = 24/62 (38%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
               L +    + ++ ++++     +  GE +  Q      ++ V  G ++   +   G
Sbjct: 13 ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 91 SE 92
          SE
Sbjct: 73 SE 74

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 87
          M +     L+   ++     I   L  +    G +I         L  V  G L    + 
Sbjct: 2  MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 88 EDGSEET 94
          ++G E T
Sbjct: 62 DEGREIT 68

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 27 YMPYIEKVSLFKGCSSEFINQIV--TRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEV 84
              + ++ LF+G   E    I+   +LH      GE I++ GN   QL F+  G +  V
Sbjct: 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 85 GVGEDGSE 92
             ++   
Sbjct: 76 TNAKENIY 83

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 34 VSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92
          + L K  +   +   ++  H   +     ++ QG   + LY++  G +  +   E+G E
Sbjct: 1  MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE 59

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEE-FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE 88
          ++ ++  F   +     ++ + +  E     G +I+E G  +D  Y + +G    V +  
Sbjct: 17 FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG---TVEISH 73

Query: 89 DGSE 92
             +
Sbjct: 74 PDGK 77

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 9/62 (14%), Positives = 24/62 (38%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          +    +        + +++       F  GE++  Q + ++ +  +  G L+   V E+G
Sbjct: 1  MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 91 SE 92
            
Sbjct: 61 KT 62

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 11/63 (17%), Positives = 22/63 (34%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89
          +   +        E +           F  G  ++  G  +  + F+  G ++   + ED
Sbjct: 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 90 GSE 92
          GSE
Sbjct: 70 GSE 72

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 15/72 (20%), Positives = 27/72 (37%)

Query: 23 SQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          S  ++   I  +  F   + E    +      +     E +++ G +    YFV  G L 
Sbjct: 1  SNAMHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLR 60

Query: 83 EVGVGEDGSEET 94
             + E G E+T
Sbjct: 61 LFFIDEKGIEQT 72

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 9/63 (14%), Positives = 21/63 (33%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89
           +   +      +  I + +   H   +     +   G+    LY+V  G +  +   +D
Sbjct: 12 TVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDD 71

Query: 90 GSE 92
            E
Sbjct: 72 DRE 74

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 6/50 (12%), Positives = 20/50 (40%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
           +   +L +  +SE  + ++    E+ +    ++       + ++ V  G
Sbjct: 5  RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSG 54

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 6/59 (10%), Positives = 22/59 (37%)

Query: 34 VSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE 92
            ++   + E    +   +          +  +G++ + L+++  G ++ +  G  G  
Sbjct: 15 RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRF 73

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 38.4 bits (90), Expect = 6e-05
 Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 2/52 (3%)

Query: 28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          MP   + ++     S            +    G ++       + ++ V  G
Sbjct: 1  MP--PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDG 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.79
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.79
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.72
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.7
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.49
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.49
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.48
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.47
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.47
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.47
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.46
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.44
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.44
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.43
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.42
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.41
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.41
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.41
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.39
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.38
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.38
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.36
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.34
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.33
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.33
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.31
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.28
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.27
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.24
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.21
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.2
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.19
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.18
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.16
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.14
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.12
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.12
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.12
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.11
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.1
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.03
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.03
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.02
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.01
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	98.99
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	98.99
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	98.95
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	98.81
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.77
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	98.67
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	98.65
3b02_A	195	Transcriptional regulator, CRP family; structural	98.55
2xp1_A	178	SPT6; transcription, IWS1, histone chaperone, mRNA	90.51
3or8_A	197	Transcription elongation factor SPT6; SH2, CTD bin	80.58

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.79  E-value=1.3e-18  Score=105.16  Aligned_cols=87  Identities=24%  Similarity=0.558  Sum_probs=82.4

Q ss_pred             cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824            3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE   82 (94)
Q Consensus         3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~   82 (94)
                      ++++++++++.+|+.||.++..+.+.++++++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+
T Consensus        45 ~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~  124 (198)
T 2ptm_A           45 KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD  124 (198)
T ss_dssp             CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEE
T ss_pred             cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEE
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCC
Q 042824           83 EVGVGEDGS   91 (94)
Q Consensus        83 v~~~~~~g~   91 (94)
                      ++.  ++|+
T Consensus       125 ~~~--~~g~  131 (198)
T 2ptm_A          125 IIM--SDGV  131 (198)
T ss_dssp             EEC--TTSC
T ss_pred             EEe--cCCe
Confidence            996  4553

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.79  E-value=1.4e-18  Score=105.48  Aligned_cols=88  Identities=26%  Similarity=0.550  Sum_probs=82.8

Q ss_pred             cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824            3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE   82 (94)
Q Consensus         3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~   82 (94)
                      ++++++++++.+|+.||.++..+.+.+++.++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+
T Consensus        46 ~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~  125 (202)
T 3bpz_A           46 KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS  125 (202)
T ss_dssp             CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEE
T ss_pred             cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCc
Q 042824           83 EVGVGEDGSE   92 (94)
Q Consensus        83 v~~~~~~g~e   92 (94)
                      ++.  ++|++
T Consensus       126 v~~--~~g~~  133 (202)
T 3bpz_A          126 VLT--KGNKE  133 (202)
T ss_dssp             EEC--TTSCC
T ss_pred             EEE--CCCeE
Confidence            985  45553

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.72  E-value=9.9e-18  Score=102.24  Aligned_cols=83  Identities=27%  Similarity=0.577  Sum_probs=78.4

Q ss_pred             CcccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEE
Q 042824            2 ESSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVL   81 (94)
Q Consensus         2 ~~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v   81 (94)
                      .++++++++++.+|+.||.++..+++..++ ++|+|.++++..+..++..++...|.+|++|+++|+.++.+|||.+|.|
T Consensus        49 ~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v  127 (212)
T 3ukn_A           49 NNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM  127 (212)
T ss_dssp             GGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCE
T ss_pred             cCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEE
Confidence            367889999999999999999999887766 7999999999999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 042824           82 EEVG   85 (94)
Q Consensus        82 ~v~~   85 (94)
                      +++.
T Consensus       128 ~v~~  131 (212)
T 3ukn_A          128 EVLK  131 (212)
T ss_dssp             EEES
T ss_pred             EEEE
Confidence            9986

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.70  E-value=6.3e-17  Score=94.31  Aligned_cols=79  Identities=27%  Similarity=0.417  Sum_probs=67.7

Q ss_pred             hhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824            7 EASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus         7 ~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .+++++.+|+.+|.++.++.+.++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.
T Consensus         5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~   83 (160)
T 4f8a_A            5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ   83 (160)
T ss_dssp             ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred             hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999986

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.49  E-value=3.9e-14  Score=81.00  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             hCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        13 ~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .+|..+|..........+|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++.
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~   79 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK   79 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE
Confidence            5677777777777788999999999999999999999999999999999999999999999999999999965

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.49  E-value=3.6e-14  Score=80.98  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   70 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSA   70 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-------
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCce
Confidence            457889999999999999999999999999999999999999999999999999999888888664

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.48  E-value=2.6e-13  Score=78.33  Aligned_cols=67  Identities=15%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..++++.+|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   76 (154)
T 2z69_A           10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK   76 (154)
T ss_dssp             HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----
T ss_pred             HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEE
Confidence            3467889999999999999999999999999999999999999999999999999999887788764

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.47  E-value=1.6e-13  Score=78.77  Aligned_cols=66  Identities=21%  Similarity=0.366  Sum_probs=61.7

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++++.+|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   69 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN   69 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEE
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEE
Confidence            457889999999999999999999999999999999999999999999999999999988888764

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.47  E-value=5e-14  Score=82.39  Aligned_cols=71  Identities=21%  Similarity=0.349  Sum_probs=63.7

Q ss_pred             HHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           22 ISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        22 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..+....++|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++. +.+|++.
T Consensus        31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~  101 (161)
T 3idb_B           31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGR  101 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEE
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeE
Confidence            3445567789999999999999999999999999999999999999999999999999999998 6677653

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.47  E-value=2.2e-13  Score=81.71  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .....++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~  103 (187)
T 3gyd_A           34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQ  103 (187)
T ss_dssp             HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEE
T ss_pred             HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeE
Confidence            3445678999999999999999999999999999999999999999999999999999999988888763

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.46  E-value=1.5e-13  Score=82.37  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=62.1

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..+++.+|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~   71 (194)
T 3dn7_A            6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ   71 (194)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE
Confidence            456788999999999999999999999999999999999999999999999999999988899875

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.44  E-value=1.7e-13  Score=83.31  Aligned_cols=65  Identities=17%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~   67 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREI   67 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEE
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEE
Confidence            46889999999999999999999999999999999999999999999999999999988888864

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.44  E-value=2.2e-13  Score=77.52  Aligned_cols=64  Identities=23%  Similarity=0.508  Sum_probs=58.6

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.+++. .+++|+++
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~   69 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSG   69 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSS
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcce
Confidence            46788999999999999999999999999999999999999999999999999966 56677764

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.43  E-value=3.2e-13  Score=81.94  Aligned_cols=63  Identities=22%  Similarity=0.425  Sum_probs=57.7

Q ss_pred             hhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        31 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      |+++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   63 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQER   63 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEE
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEE
Confidence            467999999999999999999999999999999999999999999999999999988888764

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.42  E-value=2.7e-13  Score=83.46  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+++|++.
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~   75 (237)
T 3fx3_A            9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEA   75 (237)
T ss_dssp             HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE
Confidence            4578899999999999999999999999999999999999999999999999999999988888864

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.41  E-value=3.3e-13  Score=82.80  Aligned_cols=66  Identities=23%  Similarity=0.396  Sum_probs=60.6

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~   70 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER   70 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE
Confidence            467889999999999999999999999999999999999999999999999999999988888764

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=78.85  Aligned_cols=65  Identities=18%  Similarity=0.394  Sum_probs=58.9

Q ss_pred             HhHHHhhcCcCCCCCCHHHHHHHHhhcccceec-cCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      ....+|+++++|..+++..+..++..++.+.|. +|++|+++|+.++.+|||.+|.++++.  .+|++
T Consensus        13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~   78 (134)
T 2d93_A           13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV   78 (134)
T ss_dssp             HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE
T ss_pred             HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE
Confidence            345678899999999999999999999999999 999999999999999999999999996  45543

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.41  E-value=3.7e-13  Score=82.22  Aligned_cols=67  Identities=15%  Similarity=0.292  Sum_probs=62.7

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~   73 (227)
T 3dkw_A            7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK   73 (227)
T ss_dssp             SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCB
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEE
Confidence            3567899999999999999999999999999999999999999999999999999999988888765

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.39  E-value=4.6e-13  Score=81.94  Aligned_cols=66  Identities=21%  Similarity=0.402  Sum_probs=62.0

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .++++++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~   70 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGREN   70 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEE
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEE
Confidence            456889999999999999999999999999999999999999999999999999999988888764

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.38  E-value=9e-13  Score=80.62  Aligned_cols=66  Identities=14%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ...+++.++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|+++
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~   75 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDREL   75 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEE
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE
Confidence            456788999999999999999999999999999999999999999999999999999988888874

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.38  E-value=1.1e-12  Score=80.69  Aligned_cols=66  Identities=26%  Similarity=0.374  Sum_probs=61.5

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhh--cccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTR--LHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..++.++|+|..++++.+..++..  ++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~   84 (232)
T 1zyb_A           17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT   84 (232)
T ss_dssp             HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEE
Confidence            456889999999999999999998  999999999999999999999999999999999888888764

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.36  E-value=2.5e-12  Score=82.74  Aligned_cols=66  Identities=21%  Similarity=0.421  Sum_probs=61.9

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      ..++|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+.+|++
T Consensus        11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~   76 (333)
T 4ava_A           11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA   76 (333)
T ss_dssp             CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE
T ss_pred             hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE
Confidence            456789999999999999999999999999999999999999999999999999999998888764

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.34  E-value=1.4e-12  Score=82.85  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             hCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           13 DIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        13 ~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .+|...|.+........+++++++|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++.
T Consensus        23 ~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~   95 (299)
T 3shr_A           23 AFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK   95 (299)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE
T ss_pred             CCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE
Confidence            5788888888888888999999999999999999999999999999999999999999999999999999975

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.33  E-value=6.8e-12  Score=72.79  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=57.4

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      ....++|+++|+|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.++++.
T Consensus        34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~   94 (154)
T 3pna_A           34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV   94 (154)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE
T ss_pred             HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE
Confidence            3456788999999999999999999999999999999999999999999999999999986

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.33  E-value=5.1e-12  Score=71.78  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=56.5

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      ..++++++|+|.++++..+..++..++.+.|++|++|+++|+..+.+|+|.+|.++++..
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~   68 (138)
T 1vp6_A            9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP   68 (138)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS
T ss_pred             HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeC
Confidence            456789999999999999999999999999999999999999999999999999999863

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.31  E-value=4.2e-12  Score=84.95  Aligned_cols=78  Identities=17%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             CcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824           14 IPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS   91 (94)
Q Consensus        14 lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~   91 (94)
                      .|+..|...........|+++++|.++++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++..+.+|+
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~  104 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSH  104 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCC
Confidence            456667766677778899999999999999999999999999999999999999999999999999999999888875

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.28  E-value=4e-12  Score=77.96  Aligned_cols=61  Identities=10%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .+|+|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~   74 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH   74 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCC
T ss_pred             ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence            5799999999999999999999999999999999999999999999999999988888765

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.27  E-value=5.9e-12  Score=83.82  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             HHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           22 ISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        22 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      -......++|+++++|.++++..+..++..++...|.+|++|+++|+.++.+|+|.+|.++++. +.+|++
T Consensus       138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~  207 (416)
T 3tnp_B          138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVG  207 (416)
T ss_dssp             HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCE
T ss_pred             HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCE
Confidence            3344567789999999999999999999999999999999999999999999999999999998 566665

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.24  E-value=3.1e-11  Score=74.25  Aligned_cols=59  Identities=24%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      ..++|+++|+|.++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~   63 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV   63 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE
Confidence            35678999999999999999999999999999999999999999999999999999986

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.21  E-value=2.6e-11  Score=73.13  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             cCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           35 SLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        35 ~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++++.++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   60 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM   60 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEE
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence            56778999999999999999999999999999999999999999999999988888864

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.20  E-value=2.2e-12  Score=78.66  Aligned_cols=64  Identities=11%  Similarity=0.179  Sum_probs=59.0

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .+|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++ .+++|++.
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~   67 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEF   67 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEE
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEE
Confidence            46788999999999999999999999999999999999999999999999999996 66788764

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.19  E-value=1.3e-12  Score=79.83  Aligned_cols=63  Identities=10%  Similarity=0.077  Sum_probs=57.5

Q ss_pred             HhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        30 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +|+++|+|..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++ .+++|++.
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~   63 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREI   63 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEE
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEE
Confidence            3678999999999999999999999999999999999999999999999999997 66778764

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.18  E-value=4.2e-11  Score=75.97  Aligned_cols=68  Identities=22%  Similarity=0.447  Sum_probs=61.7

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeC-CCCCc
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG-EDGSE   92 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~-~~g~e   92 (94)
                      .....++..+|+|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.++++..+ .+|++
T Consensus       153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~  221 (299)
T 3shr_A          153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP  221 (299)
T ss_dssp             HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCC
T ss_pred             HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcc
Confidence            345678889999999999999999999999999999999999999999999999999999876 46654

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.16  E-value=1.3e-10  Score=84.03  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=62.0

Q ss_pred             HHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824           19 RAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED   89 (94)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~   89 (94)
                      |..--.+.....|+++++|.++++..+..|+..+....|++|++||++||.++.+|+|.+|.|.|+..+++
T Consensus        32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~  102 (999)
T 4f7z_A           32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS  102 (999)
T ss_dssp             CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred             CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence            33333445567789999999999999999999999999999999999999999999999999999975444

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.14  E-value=6.6e-11  Score=74.66  Aligned_cols=62  Identities=23%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .....++|+++|+|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.++++.
T Consensus        34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~   95 (291)
T 2qcs_B           34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV   95 (291)
T ss_dssp             HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE
T ss_pred             HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE
Confidence            44567789999999999999999999999999999999999999999999999999999987

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.12  E-value=7.7e-11  Score=77.58  Aligned_cols=63  Identities=24%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             HHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           23 SQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        23 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      .+....++|+++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++.
T Consensus       124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~  186 (381)
T 4din_B          124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV  186 (381)
T ss_dssp             HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE
T ss_pred             HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE
Confidence            344567789999999999999999999999999999999999999999999999999999996

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.12  E-value=6.3e-10  Score=70.15  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=59.9

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG   90 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g   90 (94)
                      .....++..+++|..++...+..++..++...|.+|++|+++|+.++.+|+|.+|.++++....+|
T Consensus       153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~  218 (291)
T 2qcs_B          153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSEN  218 (291)
T ss_dssp             HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTT
T ss_pred             HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCC
Confidence            344567888999999999999999999999999999999999999999999999999999866555

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.5e-10  Score=69.52  Aligned_cols=62  Identities=18%  Similarity=0.439  Sum_probs=57.3

Q ss_pred             HhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeC
Q 042824           26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG   87 (94)
Q Consensus        26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~   87 (94)
                      ....+++.+|+|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.++++..+
T Consensus       122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~  183 (246)
T 3of1_A          122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKG  183 (246)
T ss_dssp             HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETT
T ss_pred             HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcC
Confidence            34567889999999999999999999999999999999999999999999999999998743

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.11  E-value=2.3e-10  Score=68.79  Aligned_cols=54  Identities=17%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             CCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           40 CSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        40 l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~   54 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM   54 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence            578899999999999999999999999999999999999999999988888764

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.10  E-value=2e-10  Score=75.58  Aligned_cols=67  Identities=21%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS   91 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~   91 (94)
                      ..+..++.++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.++++..+.+|+
T Consensus       244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~  310 (381)
T 4din_B          244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNE  310 (381)
T ss_dssp             HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSS
T ss_pred             HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCC
Confidence            3455678899999999999999999999999999999999999999999999999999998766554

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.03  E-value=3.9e-10  Score=70.54  Aligned_cols=57  Identities=18%  Similarity=0.316  Sum_probs=49.7

Q ss_pred             CCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           37 FKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        37 f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ...+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.
T Consensus        54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~  110 (260)
T 3kcc_A           54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM  110 (260)
T ss_dssp             -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEE
T ss_pred             cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEE
Confidence            356899999999999999999999999999999999999999999999988888864

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.03  E-value=1e-10  Score=72.57  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             hhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        31 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +.....+..+++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~   73 (250)
T 3e6c_C           11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK   73 (250)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEE
T ss_pred             hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE
Confidence            444444588999999999999999999999999999999999999999999999988898874

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.02  E-value=1.1e-10  Score=70.93  Aligned_cols=61  Identities=15%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +-|.|...++..+..+...++.+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~   63 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL   63 (213)
T ss_dssp             ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE
T ss_pred             ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE
Confidence            4578888899999999999999999999999999999999999999999999988888864

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.01  E-value=7.1e-10  Score=73.82  Aligned_cols=63  Identities=21%  Similarity=0.368  Sum_probs=56.5

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED   89 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~   89 (94)
                      +..++..+++|..++...+..++..++...|.+|++|+++|+.++.+|||.+|.++++..+.+
T Consensus       265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~  327 (416)
T 3tnp_B          265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKG  327 (416)
T ss_dssp             SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC---
T ss_pred             HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCC
Confidence            345788899999999999999999999999999999999999999999999999999986554

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=98.99  E-value=7.8e-10  Score=73.95  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=55.7

Q ss_pred             HhHHHhhcCcCCCCCCHHHHHHHHhhccc-ceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           26 LYMPYIEKVSLFKGCSSEFINQIVTRLHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      ...+++..+|+|..+++..+..++..+.. ..|++|++|+++|+.++.+|||.+|.++++..
T Consensus       334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~  395 (469)
T 1o7f_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY  395 (469)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET
T ss_pred             HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc
Confidence            34577889999999999999999999985 48999999999999999999999999999873

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=98.99  E-value=9.8e-10  Score=67.71  Aligned_cols=56  Identities=16%  Similarity=0.282  Sum_probs=49.2

Q ss_pred             CCCCHHHHHHHHh--hcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           38 KGCSSEFINQIVT--RLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        38 ~~l~~~~~~~l~~--~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++++++.+..++.  .++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~   59 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIM   59 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEE
Confidence            3577888888874  5889999999999999999999999999999999988898875

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=98.95  E-value=1.5e-09  Score=76.45  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcc-cceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           15 PVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLH-EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        15 p~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      |+..|....+....+++..+++|.++++..+..++..+. .+.|++|++|+++|+.++.+|+|.+|.|+++..
T Consensus        18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~   90 (694)
T 3cf6_E           18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY   90 (694)
T ss_dssp             CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred             ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence            334455444455567889999999999999999999997 689999999999999999999999999999974

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=98.81  E-value=7.6e-09  Score=63.95  Aligned_cols=52  Identities=25%  Similarity=0.379  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhcc---cceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           42 SEFINQIVTRLH---EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        42 ~~~~~~l~~~~~---~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++.++.++....   .+.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~   84 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI   84 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE
Confidence            667888888888   8999999999999999999999999999999988888864

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.77  E-value=7.6e-10  Score=72.11  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=1.0

Q ss_pred             HHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           28 MPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        28 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      .+.++++|+|.+++++.++.++..++.+.+++|+.|+++|+.++.+|+|.+|.++++..
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~  285 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP  285 (355)
T ss_dssp             HC---------------------------------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEEC
Confidence            45788999999999999999999999999999999999999999999999999999864

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=98.67  E-value=6.9e-08  Score=70.03  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=54.0

Q ss_pred             HhHHHhhcCcCCCCCCHHHHHHHHhhcccc-eeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           26 LYMPYIEKVSLFKGCSSEFINQIVTRLHEE-FFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        26 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~-~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      ...+++..+|.|..++......++..+... ++.+|++|+++||.++.+|||.+|.|.|+.
T Consensus       334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~  394 (999)
T 4f7z_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI  394 (999)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE
T ss_pred             HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE
Confidence            345678899999999999999999998864 567899999999999999999999999986

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=98.65  E-value=2.2e-08  Score=60.16  Aligned_cols=45  Identities=27%  Similarity=0.337  Sum_probs=38.5

Q ss_pred             HhhcccceeccCCeEEecCCcc--CeEEEEeccEEEEEeeCCCCCcC
Q 042824           49 VTRLHEEFFLPGEVIMEQGNVV--DQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        49 ~~~~~~~~~~~ge~i~~~g~~~--~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .+.++.+.|++|++|+++|+.+  +.+|+|.+|.++++..+++|++.
T Consensus         2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~   48 (202)
T 2zcw_A            2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL   48 (202)
T ss_dssp             ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE
T ss_pred             CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE
Confidence            4567889999999999999999  99999999999999988888864

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=98.55  E-value=8.2e-08  Score=57.35  Aligned_cols=39  Identities=26%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             ceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           55 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        55 ~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +.|++|++|+++|+.++.+|+|.+|.++++..+++|++.
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   40 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI   40 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE
Confidence            578999999999999999999999999999988888764

>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}

Probab=90.51  E-value=1.6  Score=25.95  Aligned_cols=52  Identities=15%  Similarity=0.223  Sum_probs=36.8

Q ss_pred             cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEe---ccEEEEEeeCCCC
Q 042824           33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVC---HGVLEEVGVGEDG   90 (94)
Q Consensus        33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~---~G~v~v~~~~~~g   90 (94)
                      ..|+|.+++..+.+.++..      ..|++|+|+...++++-+..   .|.+.-....+.|
T Consensus        13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit~Kv~d~~~~Hi~I~E~~   67 (178)
T 2xp1_A           13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLVIKFASDVFVHMKIEEHS   67 (178)
T ss_dssp             GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEEEEEETTEEEEEEEEECS
T ss_pred             cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEEEEECCCcEEEEEEEECC
Confidence            5899999999888887776      24999999999877654443   4554444333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	2e-09
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	3e-09
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	9e-09
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	4e-08
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	2e-07
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	5e-07
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	3e-06
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	1e-05
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	4e-05
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	1e-04
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	6e-04
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	8e-04

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 2e-09
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 10 VLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNV 69
          ++H      R ++ +       + + LFK    E ++Q++  + E+    GE +++QG+ 
Sbjct: 2  IIHPKTDDQRNRLQEAC-----KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDD 56

Query: 70 VDQLYFVCHGVLE 82
           D  Y +  G  +
Sbjct: 57 GDNFYVIDRGTFD 69

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 48.2 bits (114), Expect = 3e-09
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          +  V LF+      + +IV  L       G VI   G   D+++FV  G
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG 61

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (111), Expect = 9e-09
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G
Sbjct: 22 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG 70

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.6 bits (107), Expect = 4e-08
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          +IE +   K        ++V  +  + +  GE I+ QG+  D  + V  G
Sbjct: 3  FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESG 52

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          ++ KVS+ +         +   L    F  G+ I+ QG   D+ + +  G
Sbjct: 3  FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEG 52

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (100), Expect = 5e-07
 Identities = 13/64 (20%), Positives = 24/64 (37%)

Query: 19 RAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCH 78
          R+     +    ++ V  F+      + QI    + E    G  +  QG++    Y V  
Sbjct: 14 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLA 73

Query: 79 GVLE 82
          G L+
Sbjct: 74 GSLD 77

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.3 bits (93), Expect = 3e-06
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 31 IEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG 90
          + +V LF+      ++ I  RL    F     ++ +G+ V+++ F+  G LE V      
Sbjct: 8  VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (89), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 31 IEKVSLFKGCSSEFINQIVTRL-HEEFFLPGEVIMEQGNVVDQLYFVCHGVLE 82
          +  +      S+    ++   L  E     G V+  QG      Y +  G + 
Sbjct: 12 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 64

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 37.5 bits (86), Expect = 4e-05
 Identities = 5/54 (9%), Positives = 21/54 (38%)

Query: 36 LFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED 89
          ++   + E    +   +          +  +G++ + L+++  G ++ +  G  
Sbjct: 8  VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVY 61

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEF--FLPGEVIMEQGNVVDQLYFVCHGVL 81
          +T++   + ++ LF+G   E    I+ ++   F     GE I++ GN   QL F+  G +
Sbjct: 2  ETMF-DTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60

Query: 82 EEVGVGEDGSE 92
            V   ++   
Sbjct: 61 SIVTNAKENIY 71

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.4 bits (78), Expect = 6e-04
 Identities = 6/39 (15%), Positives = 16/39 (41%)

Query: 41 SSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          +   +   ++  H   +     ++ QG   + LY++  G
Sbjct: 2  TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKG 40

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 6/37 (16%), Positives = 18/37 (48%)

Query: 43 EFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHG 79
          + +++++   H   +     I+  G+  + L+F+  G
Sbjct: 3  KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKG 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.76
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.58
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.54
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.53
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.52
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.52
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.49
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.44
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.44
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.33
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.32
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.22
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.21
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.16
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.13
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	98.98
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	98.83
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	96.06
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	84.56

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.5e-18  Score=102.54  Aligned_cols=84  Identities=25%  Similarity=0.540  Sum_probs=80.4

Q ss_pred             cccchhHHHhhCcHHHHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEE
Q 042824            3 SSYTEASVLHDIPVSIRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLE   82 (94)
Q Consensus         3 ~~~~~~~~l~~lp~~l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~   82 (94)
                      ++.+++.+++.+|+.|+.++..+++.++|+++|+|.+++..++..++..++...|.+|++|+++|+.++.+|||.+|.|.
T Consensus        42 ~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~  121 (193)
T d1q3ea_          42 KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS  121 (193)
T ss_dssp             CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEE
T ss_pred             ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEE
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEee
Q 042824           83 EVGV   86 (94)
Q Consensus        83 v~~~   86 (94)
                      ++..
T Consensus       122 v~~~  125 (193)
T d1q3ea_         122 VLTK  125 (193)
T ss_dssp             EEC-
T ss_pred             eecC
Confidence            9863

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=3.2e-15  Score=84.08  Aligned_cols=64  Identities=19%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCc
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE   92 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e   92 (94)
                      ++|+++|+|.++++..+..++..++...|.+|+.|+++|+.++.+|+|.+|.++++..+++|++
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~   65 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEE   65 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCC
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCcccc
Confidence            5789999999999999999999999999999999999999999999999999999998877765

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.54  E-value=1.4e-14  Score=82.72  Aligned_cols=67  Identities=22%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcc--cceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLH--EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~--~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..+.|.++|+|++++++.+..++..++  .+.|.+|++|+.+|+.++.+|+|.+|.++++..+++|+++
T Consensus         4 ~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~   72 (147)
T d1zyba2           4 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT   72 (147)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE
T ss_pred             HHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEE
Confidence            356788999999999999999998765  4689999999999999999999999999999988888764

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.7e-14  Score=82.26  Aligned_cols=60  Identities=20%  Similarity=0.334  Sum_probs=56.4

Q ss_pred             HHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCC
Q 042824           29 PYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE   88 (94)
Q Consensus        29 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~   88 (94)
                      .+|+++|+|+++++..+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++..+.
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~   61 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK   61 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC-
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecC
Confidence            478899999999999999999999999999999999999999999999999999997654

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=9.9e-15  Score=82.80  Aligned_cols=60  Identities=23%  Similarity=0.489  Sum_probs=56.3

Q ss_pred             HhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCC
Q 042824           30 YIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED   89 (94)
Q Consensus        30 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~   89 (94)
                      .|+++|+|.++++..+..|+..++...|.+|++|+++|+.++.+|||.+|.|+++..+.+
T Consensus         7 ~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~   66 (137)
T d1wgpa_           7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG   66 (137)
T ss_dssp             SCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSC
T ss_pred             HHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCC
Confidence            578999999999999999999999999999999999999999999999999999875544

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.1e-14  Score=81.09  Aligned_cols=66  Identities=23%  Similarity=0.390  Sum_probs=59.7

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS   91 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~   91 (94)
                      ....+.|+++|+|.+++++.+..++..++...|.+|++|+++|+.++.+|+|.+|.++++... +|.
T Consensus        12 ~~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~-~~~   77 (136)
T d1cx4a1          12 NRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC-DGV   77 (136)
T ss_dssp             HHHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEE-TTE
T ss_pred             HHHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEeecc-ccc
Confidence            344578999999999999999999999999999999999999999999999999999998754 443

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.9e-14  Score=80.56  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCC
Q 042824           18 IRAKISQTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG   90 (94)
Q Consensus        18 l~~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g   90 (94)
                      -|.....+.....|+++|+|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.+.++..+.++
T Consensus        13 ~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~~   85 (155)
T d1o7fa2          13 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS   85 (155)
T ss_dssp             TCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSC
T ss_pred             hCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeecccc
Confidence            3555566667788999999999999999999999999999999999999999999999999999988755443

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.44  E-value=1.1e-13  Score=77.77  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=56.8

Q ss_pred             hHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           27 YMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        27 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      ..++|+++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~   68 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP   68 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS
T ss_pred             HHHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEe
Confidence            347899999999999999999999999999999999999999999999999999999864

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=8.6e-14  Score=78.75  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=58.3

Q ss_pred             HHHhHHHhhcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           24 QTLYMPYIEKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        24 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      +....+.+++.++|.++++..+..++..++...|++|++|+++|+.++.+|||.+|.+++...
T Consensus        15 ~~~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~   77 (136)
T d1ne6a1          15 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN   77 (136)
T ss_dssp             HHHHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET
T ss_pred             HHHHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeecc
Confidence            344567889999999999999999999999999999999999999999999999999999874

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.7e-12  Score=70.20  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             HHhHHHhhcCcCCCCCCHHHHHHHHhhcccce-eccCCeEEecCCccCeEEEEeccEEEEEee
Q 042824           25 TLYMPYIEKVSLFKGCSSEFINQIVTRLHEEF-FLPGEVIMEQGNVVDQLYFVCHGVLEEVGV   86 (94)
Q Consensus        25 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~-~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~   86 (94)
                      ....+.|+++|+|+.+++..++.|+..+.... +++|++|+++|+.++.+|+|.+|.+++...
T Consensus         6 ~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~   68 (124)
T d1o7fa3           6 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY   68 (124)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET
T ss_pred             HHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEe
Confidence            34567889999999999999999999998755 467999999999999999999999999864

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.32  E-value=1.4e-12  Score=73.82  Aligned_cols=59  Identities=10%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             cCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           35 SLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        35 ~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      .+|..+++..++.+...++++.|++|++|+.+|+.++.+|+|.+|.++++..+++|++.
T Consensus         7 elf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~   65 (142)
T d2gaua2           7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH   65 (142)
T ss_dssp             HHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCC
T ss_pred             HHHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeecccccee
Confidence            36899999999999999999999999999999999999999999999999998898875

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.22  E-value=2.4e-12  Score=72.73  Aligned_cols=62  Identities=18%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             hcCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           32 EKVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        32 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..+..+.-++.+.++.+++.++.+.|++|++|+++|+..+++|+|.+|.++++..+++|++.
T Consensus         4 ~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~   65 (139)
T d3e5ua2           4 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK   65 (139)
T ss_dssp             CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEE
T ss_pred             hhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeecccccc
Confidence            34444666777889999999999999999999999999999999999999999999998864

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.2e-11  Score=68.86  Aligned_cols=53  Identities=17%  Similarity=0.377  Sum_probs=49.1

Q ss_pred             CHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           41 SSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        41 ~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++..++.++++++.+.|++|++|+++|+..+.+|||.+|.++++..+++|++.
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~   54 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM   54 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhh
Confidence            35678899999999999999999999999999999999999999999898875

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=4.4e-11  Score=66.90  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=47.1

Q ss_pred             HHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           43 EFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        43 ~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ..++.++..++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~   53 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM   53 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccc
Confidence            457888999999999999999999999999999999999999988888764

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.13  E-value=2.3e-12  Score=72.31  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             cCcCCCCCCHHHHHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           33 KVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        33 ~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      +.++|..|++..++.+++.++.+.|++|++|+++|+.++++|+|.+|.++++..+ +|++.
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~-~g~e~   62 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVG-EEREI   62 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEE-TTEEE
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccc-cccce
Confidence            4678888999999999999999999999999999999999999999999999865 46553

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=1.8e-10  Score=63.68  Aligned_cols=49  Identities=18%  Similarity=0.369  Sum_probs=44.5

Q ss_pred             HHHHHhhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCCcC
Q 042824           45 INQIVTRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEE   93 (94)
Q Consensus        45 ~~~l~~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~e~   93 (94)
                      ++.++...+.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~   51 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL   51 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccc
Confidence            4567788899999999999999999999999999999999988888764

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=96.06  E-value=0.013  Score=30.51  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=38.7

Q ss_pred             hhcccceeccCCeEEecCCccCeEEEEeccEEEEEeeCCCCC
Q 042824           50 TRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS   91 (94)
Q Consensus        50 ~~~~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~   91 (94)
                      ..+++..|.+.++|+.+=|+-+...|+..|.+++...+++|.
T Consensus         9 ngikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~   50 (131)
T d2bgca2           9 NGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGT   50 (131)
T ss_dssp             TTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSC
T ss_pred             cCCChhhhchhheeecccCcceeEEeeecchHHhcccccCCc
Confidence            457889999999999999999999999999999999988885

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.56  E-value=0.61  Score=23.78  Aligned_cols=33  Identities=9%  Similarity=0.006  Sum_probs=25.1

Q ss_pred             ccceeccCCeEEecCCccCeEEEEeccEEEEEe
Q 042824           53 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVG   85 (94)
Q Consensus        53 ~~~~~~~ge~i~~~g~~~~~~y~i~~G~v~v~~   85 (94)
                      ....++||+.+-..-...+.+++|++|++.+..
T Consensus        29 ~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v   61 (108)
T d2b8ma1          29 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL   61 (108)
T ss_dssp             EEEEEETTCBCCCEECSSCEEEEEEESEEEEEE
T ss_pred             EEEEECCCCcChhhcccccEEEEEEeeeEEEEE
Confidence            335677887766555567789999999999986