Citrus Sinensis ID: 042843

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
MEIIKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTATVTTKTVEGSL
cccccccHHHHHHHHHHHHHHcccccccccEEccccccccccEEEEcccEEEEEEcccccccccccEEEEEccccccccEEEEccccccccccccccEEEEccEEEEEcccccEEEEcccccccccccEEEEEccccEEEEcccccccccEEEccccccccccccccccccccccccEEEEEcccccccccccEEEEEcccccccEEEEEEccEEEEEEccccccccEEEEEccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEcccHHHHHHHHHccccEEEEEEccccEEEEccccccEEcccccccEEEEEEEccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccc
cccccccHHHHHHHHHHHHHHcccHEEEccccccccEcccccEEEccccEEEEEEEEccccccccEEEEEEEEEccccEEEEEEcccccccccccEEEEEccccEEEEcccccEEEEccccccccccEEEEEcccccEEEEEccccccccEEEcccccccccccccccccccccccccEEEEcccccccccccEEEEEcccccccEEEEEcccEEEEEccccccccEEEEcccccccccEEEEEEEEcccEEEEEEEEEcccEEEEEEEccccEEEEEEEcccccccEEEEEEccccccccHHHcccccccccccccccccccccccccHHHHcccccccccEEEcEcccccccccccccccEEEccccccccccEEEEcccHHHHHHHHHHccccEEEEcccccEEEEcccHHHHHHHccccccEEEEEEHHHHHccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
MEIIKNNSWLMLFVLFMCFSlkshvsfgadtvsanqslsgdqtivskggvfafgffnpapgkssnyyiGMWYNKVSERTIVWVAnreqpvsdrfssvlrisdgnlvlfnesqlpiwstnltatsrRSVEAVLLDEGNLVLRDLSnnlskplwqsfdhpahtwipgmkltfnkrNNVSQLITSWknkenpapglfslerapdgsnqYVMLWNRSeqywssgpwdenakIFSMVPEMNQNYIYNFSYVsnenesyftynvkdstytsrafmdvsgqdkqmnwlplptnswflfwsqprqqcevyalcgqfstcnqQTERFCSClkgfqqksvsdwnledysggcvrktplqcenispanrksdqffqysnmklpkhpqsvavggirecethcmnncsctayaykdnacsiWVGSFVGlqqlqgggdIIYIKLAAsefespknkkgvvIGGVVGSVAVVALIGLIMLVYLGRRKTATVTTKTVEGSL
meiiknnsWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVlfnesqlpiwstnltatsrRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSwknkenpapGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLvylgrrktatvttktvegsl
MEIIKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVglqqlqgggDIIYIKLAASEFESPKNKKgvviggvvgsvavvaliglIMLVYLGrrktatvttktvEGSL
***IKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWK*******************NQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENI*********FFQYS********QSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTATV*********
******NSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATS*RSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQ********RKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAA************VIGGVVGSVAVVALIGLIMLVYLG****************
MEIIKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTAT**********
*EIIKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTAT**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEIIKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQGGGDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTATVTTKTVEGSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
O64477 828 G-type lectin S-receptor- yes no 0.882 0.515 0.496 1e-119
O81905 850 Receptor-like serine/thre no no 0.902 0.514 0.383 4e-85
Q9T058 849 G-type lectin S-receptor- no no 0.913 0.520 0.382 9e-83
P0DH86 853 G-type lectin S-receptor- no no 0.811 0.460 0.387 1e-76
P0DH87546 Putative inactive G-type no no 0.904 0.802 0.369 2e-76
Q39086 843 Receptor-like serine/thre no no 0.900 0.517 0.342 3e-75
Q9S972 847 Receptor-like serine/thre no no 0.892 0.510 0.362 7e-73
P17840435 S-locus-specific glycopro N/A no 0.836 0.931 0.354 1e-72
Q09092 857 Putative serine/threonine N/A no 0.911 0.514 0.336 1e-72
O81906 849 G-type lectin S-receptor- no no 0.900 0.513 0.343 3e-70
>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1 Back     alignment and function desciption
 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/453 (49%), Positives = 299/453 (66%), Gaps = 26/453 (5%)

Query: 15  LFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNK 74
            F+CF +  H S   DT+S + +LSGDQTIVS  G +  GFF P  G SSN+YIGMWY +
Sbjct: 11  FFICFFI--HGSSAVDTISGDFTLSGDQTIVSSDGTYEMGFFKP--GSSSNFYIGMWYKQ 66

Query: 75  VSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNES-QLPIWSTNLTATSRRS-VEAVL 132
           +S+ TI+WVANR++ VSD+ SSV +IS+GNL+L + + Q P+WST L +TS  S +EAVL
Sbjct: 67  LSQ-TILWVANRDKAVSDKNSSVFKISNGNLILLDGNYQTPVWSTGLNSTSSVSALEAVL 125

Query: 133 LDEGNLVLRDLSNNLSK-PLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAP 191
            D+GNLVLR   ++LS   LWQSFDHP  TW+PG+K+  +KR   SQ +TSWK+ E+P+P
Sbjct: 126 QDDGNLVLRTGGSSLSANVLWQSFDHPGDTWLPGVKIRLDKRTGKSQRLTSWKSLEDPSP 185

Query: 192 GLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENE 251
           GLFSLE   D S  Y +LWN S +YWSSGPW+  ++IF  VPEM  NYIYNFS+ SN  +
Sbjct: 186 GLFSLEL--DESTAYKILWNGSNEYWSSGPWNPQSRIFDSVPEMRLNYIYNFSFFSNTTD 243

Query: 252 SYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTC 311
           SYFTY++ +    SR  MDVSGQ KQ  WL     +W LFWSQPRQQC+VY  CG F  C
Sbjct: 244 SYFTYSIYNQLNVSRFVMDVSGQIKQFTWLE-GNKAWNLFWSQPRQQCQVYRYCGSFGIC 302

Query: 312 NQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKL 371
           + ++E FC C +GF+  S  DW+L+DYS GCVRKT LQC     +    +QFF+  NMKL
Sbjct: 303 SDKSEPFCRCPQGFRPMSQKDWDLKDYSAGCVRKTELQC-----SRGDINQFFRLPNMKL 357

Query: 372 PKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNA--CSIWVGSFVGLQQLQ---GGGDII 426
             + + +    +  C + C  +CSC AYAY + +  C +W    + LQQL+     G+I 
Sbjct: 358 ADNSEVLTRTSLSICASACQGDCSCKAYAYDEGSSKCLVWSKDVLNLQQLEDENSEGNIF 417

Query: 427 YIKLAASEF-----ESPKNKKGVVIGGVVGSVA 454
           Y++LAAS+          N KG++ G V+GS+ 
Sbjct: 418 YLRLAASDVPNVGASGKSNNKGLIFGAVLGSLG 450

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description
>sp|Q9T058|Y4119_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900 OS=Arabidopsis thaliana GN=At4g11900 PE=2 SV=1 Back     alignment and function description
>sp|P0DH86|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=SRK PE=2 SV=1 Back     alignment and function description
>sp|P0DH87|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1 Back     alignment and function description
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function description
>sp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis thaliana GN=SD16 PE=1 SV=2 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|Q09092|SRK6_BRAOE Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=2 Back     alignment and function description
>sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
224145545 824 predicted protein [Populus trichocarpa] 0.979 0.575 0.616 1e-166
255544339 594 s-receptor kinase, putative [Ricinus com 0.987 0.804 0.581 1e-155
224126835 826 predicted protein [Populus trichocarpa] 0.979 0.573 0.598 1e-155
225447699 826 PREDICTED: G-type lectin S-receptor-like 0.973 0.570 0.579 1e-154
351721140 829 S-locus lectin protein kinase family pro 0.981 0.572 0.534 1e-142
356517594 827 PREDICTED: G-type lectin S-receptor-like 0.981 0.574 0.537 1e-141
255547271 754 S-locus-specific glycoprotein S6 precurs 0.985 0.632 0.508 1e-139
357453591 829 Kinase-like protein [Medicago truncatula 0.973 0.568 0.532 1e-139
356543766 852 PREDICTED: G-type lectin S-receptor-like 0.977 0.555 0.532 1e-136
356542117 787 PREDICTED: G-type lectin S-receptor-like 0.971 0.597 0.532 1e-136
>gi|224145545|ref|XP_002325680.1| predicted protein [Populus trichocarpa] gi|222862555|gb|EEF00062.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 299/485 (61%), Positives = 360/485 (74%), Gaps = 11/485 (2%)

Query: 4   IKNNSWLMLFVLFMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKS 63
           ++NN W+M FV+F+CFSLK HVS GADT+SAN SLSGDQT+VS G VF  GFF P  G S
Sbjct: 3   VRNNPWIMPFVIFLCFSLKPHVSLGADTISANSSLSGDQTVVSAGKVFELGFFKP--GNS 60

Query: 64  SNYYIGMWY--NKVSERTIVWVANREQPVSDRFSSVLRISDGNLVLFNESQLPIWSTNLT 121
           SNYYIGMWY  +KVS +TIVWVANRE PVSDRFSS LRISDGNL LFNES++ IWSTNL+
Sbjct: 61  SNYYIGMWYYRDKVSAQTIVWVANRETPVSDRFSSELRISDGNLALFNESKILIWSTNLS 120

Query: 122 ATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLIT 181
           ++S RSVEAVL ++GNLVLRD SN    PLWQSFD PA TW+PG K+  +K NN +  + 
Sbjct: 121 SSSSRSVEAVLGNDGNLVLRDRSNPSLSPLWQSFDFPADTWLPGAKVGLSKINNRNTRLI 180

Query: 182 SWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIY 241
           SWK+K+NPAPGLFSLE  P+ S QY++ W RS QYW+SG W  N +IFS+VPEM  NYIY
Sbjct: 181 SWKSKDNPAPGLFSLELDPNQS-QYLIFWKRSIQYWTSGEW--NGQIFSLVPEMRLNYIY 237

Query: 242 NFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEV 301
           NFSYVSN+NESYFTY++ +ST  SR  MD  GQ +Q  W    TN+WFLFWSQP+ QCEV
Sbjct: 238 NFSYVSNDNESYFTYSMYNSTVISRFVMDDGGQIQQQTW-SASTNAWFLFWSQPKTQCEV 296

Query: 302 YALCGQFSTCNQQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSD 361
           YA CG F +CN +++ FC C +GF   S  DW  E +SGGC R T LQC N S  N KSD
Sbjct: 297 YAYCGAFGSCNAKSQPFCDCPRGFNPNSTGDWYSEVFSGGCERATNLQCGNSSVVNGKSD 356

Query: 362 QFFQYSNMKLPKHPQSVAVGGIRECETHCMNNCSCTAYAYKDNACSIWVGSFVGLQQLQG 421
           +FF   NMKLP +PQ VA G  +ECE+ C+ NCSCTAYA+    CS W G  + +QQL  
Sbjct: 357 RFFPSYNMKLPANPQIVAAGSAQECESTCLKNCSCTAYAFDGGQCSAWSGDLLNMQQLAD 416

Query: 422 G--GDIIYIKLAASEFESPKNKKGVVIGGVVGSVAVVALIGLIMLVYLGRRKTATVTTKT 479
           G  G  IYI+LAASEF S KN KG+ IGGVVGSVA+V+++ L++ ++L RRKT  +  K 
Sbjct: 417 GTDGKSIYIRLAASEFSSSKNNKGIAIGGVVGSVAIVSILALVLFIFLRRRKTVKM-GKA 475

Query: 480 VEGSL 484
           VEGSL
Sbjct: 476 VEGSL 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544339|ref|XP_002513231.1| s-receptor kinase, putative [Ricinus communis] gi|223547605|gb|EEF49099.1| s-receptor kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224126835|ref|XP_002319938.1| predicted protein [Populus trichocarpa] gi|222858314|gb|EEE95861.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447699|ref|XP_002277219.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351721140|ref|NP_001235152.1| S-locus lectin protein kinase family protein precursor [Glycine max] gi|223452430|gb|ACM89542.1| S-locus lectin protein kinase family protein [Glycine max] gi|223452558|gb|ACM89606.1| S-locus lectin protein kinase family protein [Glycine max] Back     alignment and taxonomy information
>gi|356517594|ref|XP_003527472.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max] Back     alignment and taxonomy information
>gi|255547271|ref|XP_002514693.1| S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis] gi|223546297|gb|EEF47799.1| S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357453591|ref|XP_003597073.1| Kinase-like protein [Medicago truncatula] gi|355486121|gb|AES67324.1| Kinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356543766|ref|XP_003540331.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max] Back     alignment and taxonomy information
>gi|356542117|ref|XP_003539517.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.838 0.490 0.503 7.8e-110
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.855 0.487 0.387 3.8e-78
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.849 0.487 0.360 7e-70
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.857 0.489 0.365 1.8e-69
TAIR|locus:2200151 830 SD1-13 "S-domain-1 13" [Arabid 0.869 0.507 0.327 2.8e-66
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.814 0.503 0.345 1.5e-65
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.857 0.488 0.340 2e-65
TAIR|locus:2197729 805 SD1-29 "S-domain-1 29" [Arabid 0.867 0.521 0.325 5.4e-63
TAIR|locus:2088619439 AT3G12000 [Arabidopsis thalian 0.805 0.888 0.361 6.9e-63
TAIR|locus:2200908 842 AT1G61610 [Arabidopsis thalian 0.876 0.503 0.328 8.8e-63
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 215/427 (50%), Positives = 282/427 (66%)

Query:    16 FMCFSLKSHVSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKV 75
             F+CF +  H S   DT+S + +LSGDQTIVS  G +  GFF P  G SSN+YIGMWY ++
Sbjct:    12 FICFFI--HGSSAVDTISGDFTLSGDQTIVSSDGTYEMGFFKP--GSSSNFYIGMWYKQL 67

Query:    76 SERTIVWVANREQPVSDRFSSVLRISDGNLVLFNES-QLPIWSTNLTATSRRS-VEAVLL 133
             S+ TI+WVANR++ VSD+ SSV +IS+GNL+L + + Q P+WST L +TS  S +EAVL 
Sbjct:    68 SQ-TILWVANRDKAVSDKNSSVFKISNGNLILLDGNYQTPVWSTGLNSTSSVSALEAVLQ 126

Query:   134 DEGNLVLRDLSNNLS-KPLWQSFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPAPG 192
             D+GNLVLR   ++LS   LWQSFDHP  TW+PG+K+  +KR   SQ +TSWK+ E+P+PG
Sbjct:   127 DDGNLVLRTGGSSLSANVLWQSFDHPGDTWLPGVKIRLDKRTGKSQRLTSWKSLEDPSPG 186

Query:   193 LFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENES 252
             LFSLE   D S  Y +LWN S +YWSSGPW+  ++IF  VPEM  NYIYNFS+ SN  +S
Sbjct:   187 LFSLEL--DESTAYKILWNGSNEYWSSGPWNPQSRIFDSVPEMRLNYIYNFSFFSNTTDS 244

Query:   253 YFTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCN 312
             YFTY++ +    SR  MDVSGQ KQ  WL     +W LFWSQPRQQC+VY  CG F  C+
Sbjct:   245 YFTYSIYNQLNVSRFVMDVSGQIKQFTWLE-GNKAWNLFWSQPRQQCQVYRYCGSFGICS 303

Query:   313 QQTERFCSCLKGFQQKSVSDWNLEDYSGGCVRKTPLQCENISPANRKSDQFFQYSNMKLP 372
              ++E FC C +GF+  S  DW+L+DYS GCVRKT LQC      N    QFF+  NMKL 
Sbjct:   304 DKSEPFCRCPQGFRPMSQKDWDLKDYSAGCVRKTELQCSR-GDIN----QFFRLPNMKLA 358

Query:   373 KHPQSVAVGGIRECETHCMNNCSCTAYAYKDNA--CSIW---VGSFVXXXXXXXXXDIIY 427
              + + +    +  C + C  +CSC AYAY + +  C +W   V +           +I Y
Sbjct:   359 DNSEVLTRTSLSICASACQGDCSCKAYAYDEGSSKCLVWSKDVLNLQQLEDENSEGNIFY 418

Query:   428 IKLAASE 434
             ++LAAS+
Sbjct:   419 LRLAASD 425
GO:0004672 "protein kinase activity" evidence=IEA;ISS
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0048544 "recognition of pollen" evidence=IEA
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197729 SD1-29 "S-domain-1 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200908 AT1G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
pfam00954110 pfam00954, S_locus_glycop, S-locus glycoprotein fa 3e-34
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 7e-32
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 4e-31
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 1e-30
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 3e-20
pfam0827666 pfam08276, PAN_2, PAN-like domain 1e-13
smart0047378 smart00473, PAN_AP, divergent subfamily of APPLE d 6e-07
cd1208738 cd12087, TM_EGFR-like, Transmembrane domain of the 0.003
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family Back     alignment and domain information 
 Score =  124 bits (313), Expect = 3e-34
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 217 WSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNENESYFTYNVKDSTYTSRAFMDVSGQDK 276
           W SGPW  N   FS +PEM +   Y +++  N  E Y+TY + +++  SR  +   G  +
Sbjct: 1   WRSGPW--NGIRFSGIPEMQKLSYYVYNFTENNEEVYYTYRMTNNSIYSRLTLSSEGSLE 58

Query: 277 QMNWLPLPTNSWFLFWSQPRQQCEVYALCGQFSTCNQQTERFCSCLKGFQQKS 329
           +  W+P  +  W LFWS P+ QC+VY  CG +  C+  T   C+C+KGF  K+
Sbjct: 59  RFTWIP-NSQDWNLFWSAPKDQCDVYGRCGPYGYCDVNTSPKCNCIKGFVPKN 110

In Brassicaceae, self-incompatible plants have a self/non-self recognition system. This is sporophytically controlled by multiple alleles at a single locus (S). S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles. Length = 110
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain Back     alignment and domain information
>gnl|CDD|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains Back     alignment and domain information
>gnl|CDD|213052 cd12087, TM_EGFR-like, Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.96
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.95
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.94
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.92
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.54
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.48
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.38
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.65
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.58
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.57
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.06
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 97.35
PF04478154 Mid2: Mid2 like cell wall stress sensor; InterPro: 93.67
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 91.86
PF15102146 TMEM154: TMEM154 protein family 91.65
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 91.17
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 91.0
PF0827771 PAN_3: PAN-like domain; InterPro: IPR006583 PAN do 90.07
smart0060594 CW CW domain. 87.03
PF02009299 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00 85.41
PTZ0038296 Variant-specific surface protein (VSP); Provisiona 84.94
PF0764542 EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 84.44
PF0103464 Syndecan: Syndecan domain; InterPro: IPR001050 The 84.2
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 83.66
cd0005336 EGF Epidermal growth factor domain, found in epide 81.08
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 80.83
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.96  E-value=6.7e-30  Score=219.61  Aligned_cols=111  Identities=41%  Similarity=0.709  Sum_probs=78.5

Q ss_pred             CCcEEEEcCCCCCCCCC-CceEEEEe-CCeEEEEcCCCceEEEe-ccCCCCCCceEEEEecCCCEEEEeccCCCCcceee
Q 042843           77 ERTIVWVANREQPVSDR-FSSVLRIS-DGNLVLFNESQLPIWST-NLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQ  153 (484)
Q Consensus        77 ~~tvVW~ANr~~Pv~~~-~~~~l~l~-~G~LvL~~~~~~~vWst-~~~~~~~~~~~a~LlDsGNLVL~~~~~~~~~~lWQ  153 (484)
                      ++|+||+|||+.|+... ...+|.|+ ||+|+|+|..++.+|++ ++.+....+..|+|+|+|||||++..   +.+|||
T Consensus         1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~---~~~lW~   77 (114)
T PF01453_consen    1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSS---GNVLWQ   77 (114)
T ss_dssp             ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETT---SEEEEE
T ss_pred             CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeec---ceEEEe
Confidence            36899999999999531 25899999 99999999998899999 55443114789999999999999964   479999


Q ss_pred             ecccCceeccCCceeeeecCCCCceEEEecCCCCCCC
Q 042843          154 SFDHPAHTWIPGMKLTFNKRNNVSQLITSWKNKENPA  190 (484)
Q Consensus       154 SFd~PTDTlLpgq~l~~n~~~g~~~~L~Sw~s~~dps  190 (484)
                      ||||||||+||||+|+.+..+|....|+||++.+|||
T Consensus        78 Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   78 SFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             STTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             ecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            9999999999999999866666556799999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>PF15102 TMEM154: TMEM154 protein family Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world Back     alignment and domain information
>PTZ00382 Variant-specific surface protein (VSP); Provisional Back     alignment and domain information
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins Back     alignment and domain information
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ] Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-11
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 4e-10
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 1e-08
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 7e-08
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 8e-08
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 1e-07
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 2e-06
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 3e-05
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 4e-05
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 2e-04
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 6e-04
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 30  DTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQP 89
           + ++  + L   Q++  +   F              Y               W +N    
Sbjct: 2   NLLTNGEGLYAGQSLDVEPYHFIMQE----DCNLVLYDHSTSV---------WASNTGIL 48

Query: 90  VSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSK 149
                 +VL+ SDGN V+++     +W+++ +     +   VL ++GN+V+         
Sbjct: 49  GKKGCKAVLQ-SDGNFVVYDAEGRSLWASH-SVRGNGNYVLVLQEDGNVVIYG------S 100

Query: 150 PLWQSFDH 157
            +W +  +
Sbjct: 101 DIWSTGTY 108
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 111 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.85
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.83
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.83
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.81
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.8
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.75
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.7
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.68
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.67
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.66
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.63
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.62
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.6
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.48
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.34
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.33
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.32
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.23
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.17
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.08
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.02
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.9
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 91.41
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=9.2e-45  Score=357.60  Aligned_cols=235  Identities=21%  Similarity=0.257  Sum_probs=179.1

Q ss_pred             ccccccccCCCCcccCCCeEEecCCeEEEEeecCCCCCCCcEEEEEEEEecCCCcEEEEcCCCCCCCCC---CceEEEEe
Q 042843           25 VSFGADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDR---FSSVLRIS  101 (484)
Q Consensus        25 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lGFf~~~~~~~~~~~lgIw~~~~~~~tvVW~ANr~~Pv~~~---~~~~l~l~  101 (484)
                      ++++.|+|.+|++|++|++|+|++|.|+||||.++     ++||   |+  +.+ +||+|||++|+.++   .+++|+|+
T Consensus        10 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~-----~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~   78 (276)
T 3m7h_A           10 NGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG-----NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLA   78 (276)
T ss_dssp             CCTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS-----CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSE
T ss_pred             ccccCCEecCCCEecCCCEEEcCCCcEEEEEECCC-----CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEe
Confidence            45678999999999999999999999999999432     4566   76  677 99999999999852   16789999


Q ss_pred             -CCeEEE--EcCCCceEEEeccCCCC----CCceEEEEecCCCEEEEeccCCCCcceeeecccCceeccCCceeeeecCC
Q 042843          102 -DGNLVL--FNESQLPIWSTNLTATS----RRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAHTWIPGMKLTFNKRN  174 (484)
Q Consensus       102 -~G~LvL--~~~~~~~vWst~~~~~~----~~~~~a~LlDsGNLVL~~~~~~~~~~lWQSFd~PTDTlLpgq~l~~n~~~  174 (484)
                       ||+|||  .|+++++||+|++...+    ..+..|+|+|+|||||++  +   .+||||  ||||||||||+|+.|..+
T Consensus        79 ~~G~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~---~~lWqS--~ptdtlLpg~~~~~~l~~  151 (276)
T 3m7h_A           79 FYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--S---LALWNG--TPAIPLVPGAIDSLLLAP  151 (276)
T ss_dssp             EEESSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE--E---EEEEES--CTTSCCCCSCTTCEEECS
T ss_pred             CCCcEEEEEeCCCCCEEEEeCCCcccccccCCceEEEEeCCCCEEecC--C---ceeeCc--cccccccccccccccccc
Confidence             999999  78888999999975421    146899999999999998  2   589999  999999999999999988


Q ss_pred             CCceEEEecCCCCCCCCceEEEEEcCCCCcEEEEEeeCCeeEEecCCcCCCCceeeeeeccccceeeEEEEEecCC-eeE
Q 042843          175 NVSQLITSWKNKENPAPGLFSLERAPDGSNQYVMLWNRSEQYWSSGPWDENAKIFSMVPEMNQNYIYNFSYVSNEN-ESY  253 (484)
Q Consensus       175 g~~~~L~Sw~s~~dps~G~y~l~~~~~g~~~~~l~~~~~~~Yw~sg~w~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~  253 (484)
                      |  +.|   ++.+||++|.|+|+|+++|+  +++.+++..+||++|+|  ++......  +..  ...+.+.+.++ ..+
T Consensus       152 g--~~L---~S~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~--~~~~~~l~--l~~--dGnLvl~d~~~~~vW  218 (276)
T 3m7h_A          152 G--SEL---VQGVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQ--GKGAVRAV--FQG--DGNLVVYGAGNAVLW  218 (276)
T ss_dssp             S--EEE---CTTCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCT--TTTCCEEE--ECT--TSCEEEECTTSCEEE
T ss_pred             C--ccc---ccCCCCCCceEEEeecCCce--EEEEeCCCeEEEECCCC--CCccEEEE--EcC--CCeEEEEeCCCcEEE
Confidence            7  557   56789999999999999996  66544456899999999  44322111  111  11232333333 333


Q ss_pred             EEEeecCCceeEEEEEccCCcEEEEeeCCCCCCCeEEEeecCC
Q 042843          254 FTYNVKDSTYTSRAFMDVSGQDKQMNWLPLPTNSWFLFWSQPR  296 (484)
Q Consensus       254 ~~~~~~~~~~~~rl~Ld~dG~l~~y~w~~~~~~~W~~~w~~p~  296 (484)
                      +++..  ....+|++|+.||+|++|.|   . ..|..++.+|.
T Consensus       219 sS~t~--~~~~~rl~Ld~dGnLvly~~---~-~~Wqsf~~~P~  255 (276)
T 3m7h_A          219 HSHTG--GHASAVLRLQANGSIAILDE---K-PVWARFGFQPT  255 (276)
T ss_dssp             ECSCT--TCTTCEEEECTTSCEEEEEE---E-EEEESSSCCTT
T ss_pred             EecCC--CCCCEEEEEcCCccEEEEcC---C-CeEEccCccCC
Confidence            32222  22347999999999999998   3 45777666654
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 4e-17
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 2e-13
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 6e-12
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 6e-11
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 3e-08
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 7e-07
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 74.6 bits (183), Expect = 4e-17
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 30  DTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQP 89
           + ++  + L   Q++      + F              + ++ +     T VW +N    
Sbjct: 2   NLLTNGEGLYAGQSLDV--EPYHFIMQED-------CNLVLYDHS----TSVWASNTGIL 48

Query: 90  VSDRFSSVLRISDGNLVLFNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSK 149
              +    +  SDGN V+++     +W+++    +   V  VL ++GN+V+         
Sbjct: 49  G-KKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYV-LVLQEDGNVVIYG------S 100

Query: 150 PLWQSFDH 157
            +W +  +
Sbjct: 101 DIWSTGTY 108
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.84
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.83
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.82
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.69
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.6
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.6
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.36
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.14
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.07
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.05
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.05
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.89
d1emoa239 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 92.3
d2vj3a142 Neurogenic locus notch homolog protein 1, Notch1 { 87.4
d1xkba139 Factor X, N-terminal module {Human (Homo sapiens) 86.3
d2vj3a239 Neurogenic locus notch homolog protein 1, Notch1 { 82.46
d1edmb_39 Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 81.83
d1lmja144 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 80.01
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]

Probab=99.84  E-value=5.5e-21  Score=160.75  Aligned_cols=111  Identities=23%  Similarity=0.504  Sum_probs=91.5

Q ss_pred             ccccCCCCcccCCCeEEecCCeEEEEeecCCCCCCCcEEEEEEEEecCCCcEEEEcCCCCCCCCCCceEEEEe-CCeEEE
Q 042843           29 ADTVSANQSLSGDQTIVSKGGVFAFGFFNPAPGKSSNYYIGMWYNKVSERTIVWVANREQPVSDRFSSVLRIS-DGNLVL  107 (484)
Q Consensus        29 ~~~l~~g~~l~~~~~l~S~~g~F~lGFf~~~~~~~~~~~lgIw~~~~~~~tvVW~ANr~~Pv~~~~~~~l~l~-~G~LvL  107 (484)
                      +|+|.+||.|.+|++|+|  |.|+|.|+.+++     +.  | |.   ..++||.||++.|..   ++.|.|+ ||+|+|
T Consensus         1 tDtL~~gq~L~~g~~l~~--g~~~l~~q~DGN-----Lv--l-y~---~~~~vW~s~~~~~~~---~~~l~l~~dGnLvl   64 (112)
T d1xd5a_           1 SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCN-----LV--L-YD---NNRAVWASGTNGKAS---GCVLKMQNDGNLVI   64 (112)
T ss_dssp             CCEEETTEEECTTCEEEE--TTEEEEECTTSC-----EE--E-EE---TTEEEEECCCTTSCS---SEEEEECTTSCEEE
T ss_pred             CCEecCCCEecCCCEEEE--CCEEEEEcCCCC-----EE--E-Ec---CCcEEEEccCccCCC---CcEEEEeccccEEE
Confidence            489999999999999985  889999997653     22  3 32   468999999998854   5789999 999999


Q ss_pred             EcCCCceEEEeccCCCCCCceEEEEecCCCEEEEeccCCCCcceeeecccCce
Q 042843          108 FNESQLPIWSTNLTATSRRSVEAVLLDEGNLVLRDLSNNLSKPLWQSFDHPAH  160 (484)
Q Consensus       108 ~~~~~~~vWst~~~~~~~~~~~a~LlDsGNLVL~~~~~~~~~~lWQSFd~PTD  160 (484)
                      +|+ +.++|++++.... +...|+|+|+|||||++.++   .++|||+.||+|
T Consensus        65 ~~~-~~~~w~s~t~~~~-~~~~l~L~ddGNlvly~~~~---~~~W~S~t~~~n  112 (112)
T d1xd5a_          65 YSG-SRAIWASNTNRQN-GNYYLILQRDRNVVIYDNSN---NAIWATHTNVGN  112 (112)
T ss_dssp             EET-TEEEEECCCCCSC-CCCEEEECTTSCEEEECTTS---CEEEECCCCCCC
T ss_pred             Eec-CCeEEEEeeccCC-CceEEEEcCCCCEEEECCCC---cEEecCCCccCC
Confidence            997 5678877765543 56789999999999998753   689999999975
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure