Citrus Sinensis ID: 042942
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.814 | 0.301 | 0.798 | 9e-64 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.835 | 0.302 | 0.626 | 3e-50 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.793 | 0.291 | 0.664 | 5e-50 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.835 | 0.302 | 0.601 | 2e-48 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.804 | 0.295 | 0.572 | 8e-46 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.804 | 0.295 | 0.585 | 1e-45 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.835 | 0.307 | 0.559 | 4e-45 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.825 | 0.307 | 0.594 | 7e-45 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.835 | 0.305 | 0.578 | 9e-45 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.820 | 0.294 | 0.546 | 1e-43 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 242 bits (618), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 127/159 (79%), Positives = 138/159 (86%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+GG FLA +
Sbjct: 64 MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAA N+YMLIFGRVLLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ SVGIG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGTEKI GGWGWRISLAMAA PA+ILT LP
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLP 222
|
Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/158 (62%), Positives = 119/158 (75%)
Query: 2 KEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSA 61
K D + + YC +DSQ LT FTSSLY+A LIASL AS++TR FGRK S+L GG F AG+
Sbjct: 68 KADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAI 127
Query: 62 LGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121
+ GAA ++MLI GR+LLG GIGFANQSVPLYLSEMAP K RGA NIGFQ+S+ IG+L
Sbjct: 128 INGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 187
Query: 122 NLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
N+LNY KI GGWGWR+SL A PA I+T+ + LP
Sbjct: 188 NVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLP 225
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Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 125/152 (82%), Gaps = 2/152 (1%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF 67
++YC F+SQLLT+FTSSLY++GLIA+L ASSVTR++GRK SI +GG +FLAG+ALGG+A
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
N+ MLI R+LLGVG+GFANQSVPLYLSEMAP K RGA + GFQ+ +GIG LS N++NY
Sbjct: 138 NVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYE 197
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T+ I GWRISLA AA PASILT+ + LP
Sbjct: 198 TQNIKH--GWRISLATAAIPASILTLGSLFLP 227
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 118/158 (74%)
Query: 2 KEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSA 61
+ED + + YC +DS LT FTSSLY+A LI+SL AS+VTR FGR+ S+L GG F AG+
Sbjct: 66 QEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGAL 125
Query: 62 LGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121
+ G A +++MLI GR+LLG GIGFANQ+VPLYLSEMAP K RGA NIGFQ+S+ IG+L
Sbjct: 126 INGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185
Query: 122 NLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
+LNY KI GGWGWR+SL A PA I+TI + LP
Sbjct: 186 EVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLP 223
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 115/152 (75%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF 67
+ YC +D++LLT FTSSLY+A L AS AS++TR FGRK S+++G AFL+G+ L G A
Sbjct: 74 TEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAI 133
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
N+ MLI GR+ LGVG+GFANQSVPLYLSEMAP K RGA NIGFQ+++ IG+L+ N++NY
Sbjct: 134 NLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYV 193
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T K+ G GWR+SL +A PA ++ + LP
Sbjct: 194 TPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLP 225
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 112/152 (73%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF 67
+ YC FDSQLLT FTSSLY+A L++SLFAS++TR FGRK S+ +GG F GSA G A
Sbjct: 71 NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQ 130
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
NI ML+ GR+LLG G+GFANQSVP+YLSEMAPP RGAFN GFQV++ G++ ++NY
Sbjct: 131 NIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYF 190
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T ++ G GWRISL +A PA ++ I LP
Sbjct: 191 TAQMKGNIGWRISLGLACVPAVMIMIGALILP 222
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MK+ + + YC FD+Q+L FTSSLY+A L+AS AS +TR GRK S+ +GG AFL G+
Sbjct: 67 MKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGA 126
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
A N+ MLI GR+LLGVG+GFANQS P+YLSEMAP K RGA NIGFQ+++ IG+L
Sbjct: 127 LFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILV 186
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGT K+ GWR+SL +AA PA ++ I + LP
Sbjct: 187 ANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILP 224
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 KEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSA 61
K+D + + YC FDS LT FTSSLY+A L +SL AS VTR FGRK S+L+GG F AG+
Sbjct: 66 KKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGAL 125
Query: 62 LGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121
L G A ++MLI GR+LLG GIGF NQSVPLYLSEMAP K RGA NIGFQ+S+ IG+L
Sbjct: 126 LNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185
Query: 122 NLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
N+LN+ KI+ WGWR+SL A PA I+T+ + LP
Sbjct: 186 NVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILP 221
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
M E + YC FD+QLL FTSSLY+A L +S AS+VTR +GRK S+ VGG AFL GS
Sbjct: 67 MHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGS 126
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
A N+ MLI GR+LLGVG+GFANQS P+YLSEMAP K RGA NIGFQ+++ IG+L
Sbjct: 127 LFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILI 186
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGT ++ GWR+SL +AA PA I+ I + LP
Sbjct: 187 ANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLP 224
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 115/161 (71%), Gaps = 6/161 (3%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF 67
SNYC +D+Q L FTSSLY+AGL A+ FAS TR GR+ ++L+ G F+ G AL A
Sbjct: 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQ 132
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
++ MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG NI FQ++V IG+L NL+NYG
Sbjct: 133 DLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 192
Query: 128 TEKINGGWGWRISLAMAAAPASILTI------ETKNLPIEQ 162
T KI GGWGWR+SL +A PA +LT+ ET N +E+
Sbjct: 193 TAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVER 233
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | ||||||
| 356517750 | 501 | PREDICTED: hexose carrier protein HEX6-l | 0.873 | 0.329 | 0.758 | 1e-66 | |
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.814 | 0.302 | 0.798 | 4e-66 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.973 | 0.362 | 0.645 | 4e-64 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.973 | 0.362 | 0.645 | 4e-64 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.973 | 0.362 | 0.645 | 4e-64 | |
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.841 | 0.308 | 0.728 | 3e-62 | |
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.841 | 0.311 | 0.805 | 4e-62 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.841 | 0.311 | 0.798 | 4e-62 | |
| 357455797 | 510 | Hexose carrier protein HEX6 [Medicago tr | 0.841 | 0.311 | 0.735 | 5e-62 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.825 | 0.305 | 0.737 | 3e-61 |
| >gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/170 (75%), Positives = 140/170 (82%), Gaps = 5/170 (2%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MK+DT +SNYC FDSQLLT FTSSLYIAGLIAS FASSVTRAFGRK SIL+GG AFL G+
Sbjct: 64 MKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGA 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAA NIYMLI GRV+LGVGIGFANQS PLYLSEMAPP+ RGA N GFQ+ VGIGVLS
Sbjct: 124 ALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGVLS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP-----IEQMDK 165
NL+N+GTEKI GWGWRISL MAA PAS+LT + LP I Q DK
Sbjct: 184 ANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDK 233
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/159 (79%), Positives = 138/159 (86%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MK+D ISNYC FDSQLLTTFTSSLYIAGL+AS FASS+TRAFGRK SILVGG AFL G+
Sbjct: 65 MKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGA 124
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAA NIYMLI GRVLLGVGIGFANQ+VPLYLSEMA P+ RGA NIGFQ+ VGIGVLS
Sbjct: 125 ALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLS 184
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+N+GTEKI GWGWRISLAMAA PA+ILT+ LP
Sbjct: 185 ANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLP 223
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLYIAGL+AS AS +T+ FGRK +IL GG AFL GS
Sbjct: 64 MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAAFN+YM+I GR+LLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ S+G+G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLPIEQMDKLWGEQTVGRALVLEE 180
NL+N+GTEKI GGWGWR+SLA+AA PASILT+ LP + + G+A ++ +
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQ 243
Query: 181 NSLGSSGRQ 189
G++ Q
Sbjct: 244 RVRGTNDVQ 252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLYIAGL+AS AS +T+ FGRK +IL GG AFL GS
Sbjct: 64 MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAAFN+YM+I GR+LLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ S+G+G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLPIEQMDKLWGEQTVGRALVLEE 180
NL+N+GTEKI GGWGWR+SLA+AA PASILT+ LP + + G+A ++ +
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQ 243
Query: 181 NSLGSSGRQ 189
G++ Q
Sbjct: 244 RVRGTNDVQ 252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLYIAGL+AS AS +T+ FGRK +IL GG AFL GS
Sbjct: 64 MKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGS 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAAFN+YM+I GR+LLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ S+G+G LS
Sbjct: 124 ALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLPIEQMDKLWGEQTVGRALVLEE 180
NL+N+GTEKI GGWGWR+SLA+AA PASILT+ LP + + G+A ++ +
Sbjct: 184 ANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQ 243
Query: 181 NSLGSSGRQ 189
G++ Q
Sbjct: 244 RVRGTNDVQ 252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/166 (72%), Positives = 136/166 (81%), Gaps = 7/166 (4%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLY+AGL+AS FASS+TR FGRK SIL GG AFL+GS
Sbjct: 64 MKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGAAFLSGS 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQ-------SVPLYLSEMAPPKNRGAFNIGFQVS 113
AL GAA N+YMLIFGRVLLGVG+GFANQ +VPLYLSEMAPP+ RGA N GFQ+
Sbjct: 124 ALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAINNGFQLC 183
Query: 114 VGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
+ IGVLS N +N+GTEKI GGWGWRISLAM A PA+ LTI + LP
Sbjct: 184 IAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFLP 229
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/159 (80%), Positives = 139/159 (87%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+GG FLAG+
Sbjct: 64 MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVFLAGA 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAA N+YMLIFGRVLLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ SVGIG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGTEKI GGWGWRISLAMAA PA+ILT LP
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLP 222
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/159 (79%), Positives = 138/159 (86%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MKEDT ISNYC FDSQLLT+FTSSLY+AGL+AS FASSVTRAFGRK SIL+GG FLA +
Sbjct: 64 MKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXA 123
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAA N+YMLIFGRVLLGVG+GFANQ+VPLYLSEMAPP+ RGA N GFQ SVGIG LS
Sbjct: 124 ALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALS 183
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGTEKI GGWGWRISLAMAA PA+ILT LP
Sbjct: 184 ANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLP 222
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/159 (73%), Positives = 133/159 (83%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS 60
MK D +SNYC FDSQLLT+FTSSLY+AG + S FAS VTR FGRK SI+ GG AFLAG+
Sbjct: 65 MKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIVAGGAAFLAGT 124
Query: 61 ALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
ALGGAAFN+YMLI GR+LLGVG+GFANQ+VPLYLSEMA P+ RGA N GFQ+S+GIG LS
Sbjct: 125 ALGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRFRGAINNGFQLSIGIGALS 184
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGTEKI GGWGWR+SLAMAA PAS LT+ LP
Sbjct: 185 ANLINYGTEKIEGGWGWRVSLAMAAVPASFLTLGALFLP 223
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 115/156 (73%), Positives = 134/156 (85%)
Query: 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG 63
D +SNYC FDSQLLT+FTSSLY+AGL+ S FAS +T+AFGRK SI+VGG AFLAG+ LG
Sbjct: 68 DDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGGAAFLAGTGLG 127
Query: 64 GAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNL 123
GAAFN+YMLI GR+LLGVG+GFANQ+VPLYLSEMA P+ RGA N GFQ+S+GIG LS NL
Sbjct: 128 GAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRGAINNGFQLSIGIGALSANL 187
Query: 124 LNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
+NYGTEKI GGWGWR+SLAMAA PAS+LT+ LP
Sbjct: 188 INYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLP 223
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 189 | ||||||
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.835 | 0.302 | 0.556 | 1.1e-44 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.804 | 0.295 | 0.532 | 1.6e-43 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.804 | 0.295 | 0.519 | 3.2e-43 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.835 | 0.307 | 0.515 | 1.1e-42 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.772 | 0.277 | 0.534 | 5.9e-42 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.835 | 0.305 | 0.528 | 7.5e-42 | |
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.793 | 0.291 | 0.592 | 1.2e-40 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.825 | 0.309 | 0.509 | 9.4e-40 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.767 | 0.286 | 0.530 | 8.9e-38 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.830 | 0.306 | 0.474 | 2.1e-36 |
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 88/158 (55%), Positives = 109/158 (68%)
Query: 2 KEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXX 61
+ED + + YC +DS LT FTSSLY+A LI+SL AS+VTR FGR+ S+L
Sbjct: 66 QEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGAL 125
Query: 62 XXXXXXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121
+++MLI GR+LLG GIGFANQ+VPLYLSEMAP K RGA NIGFQ+S+ IG+L
Sbjct: 126 INGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVA 185
Query: 122 NLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
+LNY KI GGWGWR+SL A PA I+TI + LP
Sbjct: 186 EVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLP 223
|
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| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 81/152 (53%), Positives = 104/152 (68%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXXXXX 67
+ YC FDSQLLT FTSSLY+A L++SLFAS++TR FGRK S+ +
Sbjct: 71 NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQ 130
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
NI ML+ GR+LLG G+GFANQSVP+YLSEMAPP RGAFN GFQV++ G++ ++NY
Sbjct: 131 NIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYF 190
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T ++ G GWRISL +A PA ++ I LP
Sbjct: 191 TAQMKGNIGWRISLGLACVPAVMIMIGALILP 222
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 79/152 (51%), Positives = 105/152 (69%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXXXXX 67
+ YC +D++LLT FTSSLY+A L AS AS++TR FGRK S+++
Sbjct: 74 TEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAI 133
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
N+ MLI GR+ LGVG+GFANQSVPLYLSEMAP K RGA NIGFQ+++ IG+L+ N++NY
Sbjct: 134 NLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYV 193
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T K+ G GWR+SL +A PA ++ + LP
Sbjct: 194 TPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLP 225
|
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| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 82/159 (51%), Positives = 107/159 (67%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXX 60
MK+ + + YC FD+Q+L FTSSLY+A L+AS AS +TR GRK S+ +
Sbjct: 67 MKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGA 126
Query: 61 XXXXXXXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
N+ MLI GR+LLGVG+GFANQS P+YLSEMAP K RGA NIGFQ+++ IG+L
Sbjct: 127 LFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILV 186
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGT K+ GWR+SL +AA PA ++ I + LP
Sbjct: 187 ANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILP 224
|
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| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 78/146 (53%), Positives = 102/146 (69%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXXXXX 67
SNYC +D+Q L FTSSLY+AGL A+ FAS TR GR+ ++L+
Sbjct: 73 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQ 132
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
++ MLI GR+LLG G+GFANQ+VPL+LSE+AP + RG NI FQ++V IG+L NL+NYG
Sbjct: 133 DLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 192
Query: 128 TEKINGGWGWRISLAMAAAPASILTI 153
T KI GGWGWR+SL +A PA +LT+
Sbjct: 193 TAKIKGGWGWRLSLGLAGIPALLLTV 218
|
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| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 84/159 (52%), Positives = 106/159 (66%)
Query: 1 MKEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXX 60
M E + YC FD+QLL FTSSLY+A L +S AS+VTR +GRK S+ V
Sbjct: 67 MHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGS 126
Query: 61 XXXXXXXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS 120
N+ MLI GR+LLGVG+GFANQS P+YLSEMAP K RGA NIGFQ+++ IG+L
Sbjct: 127 LFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILI 186
Query: 121 DNLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
NL+NYGT ++ GWR+SL +AA PA I+ I + LP
Sbjct: 187 ANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLP 224
|
|
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 90/152 (59%), Positives = 111/152 (73%)
Query: 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXXXXX 67
++YC F+SQLLT+FTSSLY++GLIA+L ASSVTR++GRK SI +
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
N+ MLI R+LLGVG+GFANQSVPLYLSEMAP K RGA + GFQ+ +GIG LS N++NY
Sbjct: 138 NVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYE 197
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
T+ I GW RISLA AA PASILT+ + LP
Sbjct: 198 TQNIKHGW--RISLATAAIPASILTLGSLFLP 227
|
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 83/163 (50%), Positives = 107/163 (65%)
Query: 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXXX 65
N ++YC +D+Q+LT FTSSLY AGLI++ AS VTR +GR+ SILV
Sbjct: 73 NETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAA 132
Query: 66 XXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLN 125
NI MLI GR+ LG+GIGF NQ+VPLYLSEMAP K RG N FQ++ IG+L NL+N
Sbjct: 133 AKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLIN 192
Query: 126 YGTEKINGGWGWRISLAMAAAPASILTI------ETKNLPIEQ 162
Y TE+I+ WGWR+SL +A PA ++ + ET N +EQ
Sbjct: 193 YKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQ 234
|
|
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 79/149 (53%), Positives = 106/149 (71%)
Query: 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXXXXX 64
TN+ YC +DSQLLT FTSSLY+AGL+ASL AS +T A+GR+ ++++
Sbjct: 71 TNV--YCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALING 128
Query: 65 XXXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124
NI MLI GR+LLG G+GF NQ+ P+YLSE+APP+ RGAFNIGF + +GV++ NL+
Sbjct: 129 LAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLI 188
Query: 125 NYGTEKINGGWGWRISLAMAAAPASILTI 153
NYGT+ GW RISL +AA PA+I+T+
Sbjct: 189 NYGTDSHRNGW--RISLGLAAVPAAIMTV 215
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 75/158 (47%), Positives = 108/158 (68%)
Query: 2 KEDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVXXXXXXXXXX 61
K+ + SNYC +D+Q L FTSSLY+AGL+++L AS +TR +GR+ASI+
Sbjct: 69 KKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSG 128
Query: 62 XXXXXXNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121
N+ ML+ GR++LGVGIGF NQ+VPLYLSE+AP RG N+ FQ++ IG+ +
Sbjct: 129 LNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTA 188
Query: 122 NLLNYGTEKINGGWGWRISLAMAAAPASILTIETKNLP 159
N++NYGT+++ WGWR+SL +AA PA ++T+ LP
Sbjct: 189 NMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLP 225
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | HT4 | SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002307001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa) | • | 0.481 | |||||||
 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 189 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-30 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-24 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-14 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 2e-05 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 1e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 4e-04 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 8e-04 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 0.001 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.001 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 0.001 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 0.003 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 58/152 (38%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--F 67
C + L S + LI SLFA + FGRK S+L+G F+ G+ L G A
Sbjct: 40 ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99
Query: 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127
+ YMLI GRV++G+G+G + VP+Y+SE+AP K RGA +Q+ + G+L ++ G
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159
Query: 128 TEKINGGWGWRISLAMAAAPASILTIETKNLP 159
K + GWRI L + PA +L I LP
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
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Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 9e-24
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Query: 21 FTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA---AFNIYMLIFGRV 77
S + G I +LFA ++ FGRK S+L+ F+ G+ L G A ++ MLI GRV
Sbjct: 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135
Query: 78 LLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGW 137
LLG+G+G A+ VP+YLSE+AP RGA +Q+++ G+L G +N GW
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195
Query: 138 RISLAMAAAPASILTI 153
RI L + PA +L +
Sbjct: 196 RIPLGLQLIPAGLLFL 211
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-14
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA 66
++ + S+ + + SL A ++ FGR+ +L+G F GS L A
Sbjct: 25 LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84
Query: 67 FNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNY 126
++++L+ GR LLG+G G + ++E PPK RG F G+G L LL
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144
Query: 127 GTEKINGGWGWRISLAMAAAPASILTI 153
+ GWR + A +L +
Sbjct: 145 L---LAESLGWRWLFLILAILGLLLAL 168
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-09
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 35/163 (21%)
Query: 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-------- 65
+ LL +S I +I + FGR+ S+ + F SALG A
Sbjct: 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI-SALGSAWPEFGFTS 111
Query: 66 ----------AFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRG---AFNIGFQV 112
F IY R++ G+G+G A+ P+Y++E+AP RG +FN Q
Sbjct: 112 IGPDNTGYVPEFVIY-----RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN---QF 163
Query: 113 SVGIGVLSDNLLNYGTEKINGG-W----GWRISLAMAAAPASI 150
++ G L +NY + W GWR A A PA +
Sbjct: 164 AIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL 206
|
Length = 479 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-09
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 3/142 (2%)
Query: 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYM 71
+ ++ + +A A ++ FGR+ +L+G F G L A ++++
Sbjct: 28 GISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWL 87
Query: 72 LIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI 131
L+ RVL G+G G + +++ PP+ RG G+G LL +
Sbjct: 88 LLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---L 144
Query: 132 NGGWGWRISLAMAAAPASILTI 153
+GWR + + A A + +
Sbjct: 145 ASLFGWRAAFLILAILALLAAV 166
|
Length = 346 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 24 SLYIAG-----LIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVL 78
L +AG LI S + +T FGRK +LVG F+ +A+ + NI +LI R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 79 LGVGIGFANQSVPLYLSEMAPPKNRGA 105
G G FA + ++++ PP+ RG
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGV 87
|
Length = 141 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 14 DSQLLTTFTSSLYIAGLIAS-LFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYML 72
++QL F S+Y+AG+ A+ LFA + GRK + G F+ S L A +
Sbjct: 37 EAQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94
Query: 73 IFGRVLLGVGIGF 85
+ GR L G+G G
Sbjct: 95 LAGRFLQGIGAGC 107
|
Length = 392 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 48 SILVGGT---AFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRG 104
SI+ GT AF+ G A G A + +L+ GR+L G G V +YL+E+A P +G
Sbjct: 94 SIMASGTLLIAFVPGYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVYLAEIATPGRKG 152
Query: 105 AFNIGFQ---------VSVGIGVLSDNLLNYGTEKINGGWGWRI 139
F +Q + +G L + L + WGWRI
Sbjct: 153 -FYTSWQSASQQVAVVFAALLGYLLNQWL---SPAQMAEWGWRI 192
|
Length = 434 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLA-GSALGGAAFNIY 70
+ S + G++ +L ++ GR+ +L+ G A G L A ++
Sbjct: 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA 266
Query: 71 MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIG 117
+L+ +LLG G+GFA ++ SE+APP+ RG + F +G
Sbjct: 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG 313
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLI 73
D+ + S ++ L+ S ++ FGRK +L+ L + N + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 74 FGRVLLGVGI-GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN 132
R+L+G+GI G Q+V L E P K R QV +G++ L+ Y
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--- 240
Query: 133 GGWGWRISLAMAAAP 147
WR + P
Sbjct: 241 ---DWRWLQLAVSLP 252
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 71 MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130
+L+ R++ G +G LYL+E APP RG + QV +G+L L
Sbjct: 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157
Query: 131 INGG-----WGWRISLAMAAAPASI 150
+ G WGWRI ++A I
Sbjct: 158 LLGDDALLEWGWRIPFLVSAVLVLI 182
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 30 LIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89
+LF + GR+ +L F + L A N+ L+ R L G+G+G +
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGW-----GWRISLAMA 144
+ +SE AP + RG IG L GW GWR +
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFYVG 177
Query: 145 A-APASILTIETKNLP 159
AP +L + + LP
Sbjct: 178 GIAPLLLLLLLMRFLP 193
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 27 IAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86
+ + + + +T R+ +L F+ + L A + +L+ R L G+ G
Sbjct: 59 LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118
Query: 87 NQSVPLYLSEMAPPKNRGA----FNIGFQVSVGIGV 118
+ + PP RG G ++ +GV
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV 154
|
Length = 394 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 22 TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGV 81
+S +A I+ + + FG + L+ AF GS L G A N+ ++I RV+ G
Sbjct: 43 ITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGF 102
Query: 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIG-VLSDNLLNYGTEKINGGWGW 137
G G L + PP+ RG + ++V + L L + E W W
Sbjct: 103 GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY--HWRW 157
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 18 LTTFTSSLYIAGL-IASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGR 76
+ T +LY+ G L ++ +GR+ +L+G F S + NI L+ R
Sbjct: 41 IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLR 100
Query: 77 VLLGVG 82
+ G
Sbjct: 101 FVQAFG 106
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 18 LTTFTSSL-----YIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FNI 69
LT F +SL + I SL A + + G KA I++G + G+AL A +
Sbjct: 45 LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSY 104
Query: 70 YMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGF 110
+ +L GIG + Y++ + P++ AF +
Sbjct: 105 GFFLVALFILASGIGLLETAANPYVTLLGKPES-AAFRLNL 144
|
Length = 422 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 189 | |||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.9 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.9 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.9 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.89 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.89 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.88 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.88 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.87 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.87 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.86 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.86 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.86 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.86 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.86 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.86 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.85 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.85 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.85 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.85 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.85 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.85 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.85 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.85 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.85 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.84 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.84 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.83 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.83 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.83 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.83 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.83 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.82 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.82 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.82 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.82 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.82 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.82 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.81 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.8 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.8 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.8 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.79 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.79 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.79 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.78 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.78 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.78 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.78 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.77 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.77 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.76 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.76 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.76 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.76 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.76 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.76 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.75 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.75 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.74 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.74 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.74 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.74 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.73 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.7 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.69 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.66 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.66 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.64 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.63 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.63 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.63 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.62 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.61 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.61 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.61 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.61 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.6 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.59 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.57 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.57 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.56 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.56 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.55 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.54 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.53 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.53 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.53 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.51 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.5 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.5 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.48 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.46 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.46 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.46 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.46 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.46 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.45 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.45 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.44 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.44 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.43 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.42 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.41 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.39 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.39 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.37 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.37 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.36 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.36 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.35 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.34 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.34 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.34 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.32 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.32 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.32 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.32 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.32 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.3 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.28 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.26 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.25 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.24 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.24 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.24 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.23 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.23 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.23 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.22 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.2 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.2 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.2 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.19 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.18 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.18 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.18 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.18 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.18 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.17 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.17 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.17 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.16 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.15 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.14 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.14 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.14 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.13 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.13 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.12 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.12 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.11 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.1 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.09 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.09 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.08 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.07 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.07 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.07 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.03 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.03 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.02 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.95 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.95 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.94 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.93 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.91 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.91 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.9 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.87 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.79 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.79 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.78 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.78 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.75 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.75 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.72 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.71 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.7 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.67 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.64 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.59 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.57 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.57 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.54 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.53 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.52 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.51 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.5 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.49 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.46 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.4 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.39 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.39 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.38 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.38 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.36 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.31 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.23 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.17 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.16 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.03 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.84 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.81 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.76 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.72 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.7 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.48 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.42 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.22 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.06 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.01 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.92 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.75 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.68 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.67 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 96.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.49 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.43 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.12 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.98 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.59 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.21 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 92.92 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.77 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.27 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 91.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 91.51 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 91.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.1 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.54 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.71 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 87.75 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 87.72 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 85.68 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 84.69 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 84.03 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 83.11 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 82.31 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 82.28 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 82.08 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 81.67 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.38 |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=174.09 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=148.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.++++++..+.+++.++++++++++++++|+++||+|||+.++++.++.+++.++.+++++++.++++|++.|++.+
T Consensus 191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g 270 (742)
T TIGR01299 191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIG 270 (742)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc----------CCcchHHHHHhhHHHHHHHHh-
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN----------GGWGWRISLAMAAAPASILTI- 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~w~~~~~~~~~~~~~~~~- 153 (189)
...+....++.|++|++.|++.+++.+.++.+|.++++.+++.+.... ...+||+.+++.+++.++.++
T Consensus 271 ~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 271 GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765433211 124799998887776665544
Q ss_pred -----hcCCccccccchHHHHHHHHHHhh
Q 042942 154 -----ETKNLPIEQMDKLWGEQTVGRALV 177 (189)
Q Consensus 154 -----e~~~~~~~~~~~~~~~~~~~~~~~ 177 (189)
|+|+|...+++.+++.+.+++..+
T Consensus 351 ~~~lPESPrwL~~~gr~~eA~~iL~~i~~ 379 (742)
T TIGR01299 351 LTFMPESPRFFLENGKHDEAWMILKLIHD 379 (742)
T ss_pred HHHcCCCHHHHHHCCCHHHHHHHHHHHhc
Confidence 999998888777776666655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=160.84 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=134.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++|+++++.+++.+++++++.+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.
T Consensus 31 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 110 (412)
T TIGR02332 31 GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAE 110 (412)
T ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc---cCCcchHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI---NGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~ 151 (189)
+...+....++.|++|+++|++++++++....+|..+++.++..+... .+..+||+.|++.+++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~ 181 (412)
T TIGR02332 111 AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL 181 (412)
T ss_pred hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999999999997665421 12358999999987776544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-23 Score=164.83 Aligned_cols=165 Identities=20% Similarity=0.251 Sum_probs=144.9
Q ss_pred cccccccccCC---chhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFD---SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 80 (189)
.|.+.++++++ +.+.++..+++.+++.+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 46778899998 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------h
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------E 154 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e 154 (189)
++.+...+....++.|++|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.+++.++..+ |
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999886654 599999888776665444 8
Q ss_pred cCCccccccchHHHHHHHHH
Q 042942 155 TKNLPIEQMDKLWGEQTVGR 174 (189)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~ 174 (189)
+|+|...+++.+++++..++
T Consensus 266 sp~~l~~~~~~~~a~~~l~~ 285 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQR 285 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHH
Confidence 88887776666655544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=160.73 Aligned_cols=156 Identities=23% Similarity=0.336 Sum_probs=128.3
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh------------hhHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA------------FNIYMLIFG 75 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 75 (189)
..+++.++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.+..++. ..+..+++.
T Consensus 47 ~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (479)
T PRK10077 47 NLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126 (479)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999998888776642 235677899
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc-----ccCCcchHHHHHhhHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK-----INGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~w~~~~~~~~~~~~~ 150 (189)
|+++|++.+...+....+++|++|+++|++++++.+.+..+|..+++.++..+.. ..++++||+.|++.+++.++
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~ 206 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALL 206 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887654432 11346899999987666655
Q ss_pred HHh------hcCCcccccc
Q 042942 151 LTI------ETKNLPIEQM 163 (189)
Q Consensus 151 ~~~------e~~~~~~~~~ 163 (189)
..+ |+|++..+++
T Consensus 207 ~~~~~~~l~~s~~~l~~~~ 225 (479)
T PRK10077 207 FLMLLYFVPETPRYLMSRG 225 (479)
T ss_pred HHHHHHcCCCCcHHHHHcC
Confidence 443 6665543333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=154.51 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=120.5
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+++.|++.|++.
T Consensus 14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~ 93 (368)
T TIGR00903 14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ 93 (368)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence 47788999999999999999999999999999999999999998776555554444332333368999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+. .......++|++|+++|++++++.+.+..+|..+++.++..+.. +.+||+.|++.++++.+..+
T Consensus 94 ~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 94 PF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHH
Confidence 86 44555667999999999999999999999999999999887764 35999999887776655433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=160.03 Aligned_cols=155 Identities=24% Similarity=0.293 Sum_probs=131.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHhhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN------IYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~~~ 85 (189)
+.+..+.+++.+...+++.++++++|+++||+|||+++.++.++..++.++.+++.+ ++.++++|++.|++.+.
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 131 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG 131 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence 455667789999999999999999999999999999999999999999988877654 67899999999999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc--------------------cCCcchHHHHHhhH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI--------------------NGGWGWRISLAMAA 145 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~~w~~~~~~~~ 145 (189)
..+..+.++.|++|+++|+++.++.+....+|..+++.++..+... ..+++||+.+.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999988886543210 01247999998887
Q ss_pred HHHHHHHh------hcCCccccccchH
Q 042942 146 APASILTI------ETKNLPIEQMDKL 166 (189)
Q Consensus 146 ~~~~~~~~------e~~~~~~~~~~~~ 166 (189)
+++++..+ |+|+|..++++++
T Consensus 212 ip~~i~~~~~~~lpESpr~l~~~~~~~ 238 (502)
T TIGR00887 212 VPALLALYFRLTIPETPRYTADVAKDV 238 (502)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhCcch
Confidence 77665443 9999987766543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=152.47 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=141.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
-|++.+++|+|...+++..++|.+++.++.++...++||+.||++++..+.+++++.++.++++|++.++++|++.|+..
T Consensus 36 Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~ 115 (394)
T COG2814 36 LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAH 115 (394)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
|.+++....+..++.|+++|++++++...+..++.++|.+++.++.+. +|||..|+..+.++++..+
T Consensus 116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~ 182 (394)
T COG2814 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLALL 182 (394)
T ss_pred HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888865 4999999999988888777
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=152.78 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=132.5
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++|+++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++..+.++++.+++.|++.|++.
T Consensus 35 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 114 (405)
T TIGR00891 35 LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGM 114 (405)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|+++.++.+.+..+|..+++.++..+....+ .+||+.|.+.++..++..+
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALW 183 (405)
T ss_pred hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776654321 2599999877665554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=151.64 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=134.5
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++++.+++.+.+.+++.+++++.|.++||+|||+++..+.++.+++.+...++++++.+++.|+++|++.
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~ 111 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH 111 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|++++++.+...++|..++|.++..+... .+||+.|++.++++++..+
T Consensus 112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999999999999999999999998766543 4899999988877665543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=156.22 Aligned_cols=160 Identities=35% Similarity=0.526 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLS 95 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 95 (189)
.+.+++.++..++..+++++.|.++|++|||+.++++.+.+.++.++.+++++..+++++|++.|+|.|......+.|++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCCccccccchHHHH
Q 042942 96 EMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKNLPIEQMDKLWGE 169 (189)
Q Consensus 96 e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~~~~~~~~~~~~~ 169 (189)
|..|++.||...+..+....+|..++..++...... . ++||..+.+..+.+++..+ |+|+|..++++.++++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~ 246 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAK 246 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHH
Confidence 999999999999999999999999997777665543 1 5899888887777766655 8999999988888888
Q ss_pred HHHHHHhh
Q 042942 170 QTVGRALV 177 (189)
Q Consensus 170 ~~~~~~~~ 177 (189)
+...+.++
T Consensus 247 ~~l~~l~g 254 (513)
T KOG0254|consen 247 RSLKRLRG 254 (513)
T ss_pred HHHHHHhC
Confidence 88777766
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=156.53 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=138.5
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+.++.+.....+..+++++|..+|++++|+++||+|||+++++++++..++.+..++++|++.+++.|++.|++.+....
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 44566677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCCccccc
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKNLPIEQ 162 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~~~~~~ 162 (189)
....++.|+.++++|+.+..+....+..|.+..+..+++.. +||+.+++..++..+.++ |+|+|...+
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~------~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~ 264 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR------DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK 264 (521)
T ss_pred HhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence 99999999999999999999944444444444444444443 799999998888876644 999999998
Q ss_pred cchHHHHHHHHHHh
Q 042942 163 MDKLWGEQTVGRAL 176 (189)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (189)
++.+++.+..++..
T Consensus 265 g~~~~a~~~l~~~a 278 (521)
T KOG0255|consen 265 GRIDEAIKILKKIA 278 (521)
T ss_pred CchHHHHHHHHHHH
Confidence 88887777666654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=150.64 Aligned_cols=147 Identities=15% Similarity=0.155 Sum_probs=130.9
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
-|.+.++++.+.++.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.++..++++++.++++|+++|++.
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~ 118 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI 118 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|++.+++......+|..++|.++..+... .+||+.|++.+++.++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 119 CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 876677778899999999999999999999999999999998766533 4899999988776555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=150.11 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=133.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++..+.++.++++.+++.|++.|++.
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 96 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE 96 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|++.+++.+....+|..+++.++..+... .+||+.|.+.+++.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765533 4799999887766655433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=148.86 Aligned_cols=146 Identities=17% Similarity=0.177 Sum_probs=133.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.++..+++.++..+++++.|.++||+|||+++..+.++.+++.++..+.++++.+++.|++.|++.
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 122 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL 122 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence 46677899999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+...+....++.|++|+++|+++.+......++|..++|.++..+... ++||+.|++.+++++++.
T Consensus 123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877643 489999988776665544
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-23 Score=158.64 Aligned_cols=147 Identities=16% Similarity=0.235 Sum_probs=137.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
+.+++.++++++..+++.+++.+.+.+.+|++|+++||+.||+++.+|..++.++.+..+++..+|++.++|-+.|+|.+
T Consensus 57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEA 136 (493)
T ss_pred HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+..+.+++|.+|..+|++++++++++..+|..+|.+++..+..... .|||.|+..+++++++.+
T Consensus 137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~ 203 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGL 203 (493)
T ss_pred hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHH
Confidence 9999999999999999999999999999999999999999888776653 399999988888877766
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-21 Score=153.40 Aligned_cols=131 Identities=17% Similarity=0.252 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHhhhhhhhhhhhhHH
Q 042942 22 TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYM--------LIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
.++.++++.+++++.|+++||+|||+++.++.++++++++++++++++.. ++++|+++|++.|..++....+
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 47778999999999999999999999999999999999999999998864 7889999999999999999999
Q ss_pred HhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc-----cCCcchHHHHHhhHHHHHHHH
Q 042942 94 LSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI-----NGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 94 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+.|++|+++|++..++.+.+..+|..+++.+...+... ..+++||+.|++.+++.++..
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~ 206 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL 206 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888777665433211 124699999998776555433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=147.07 Aligned_cols=161 Identities=27% Similarity=0.405 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA---AFNIYMLIFGRVLLGVGIGFANQSVPLYL 94 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 94 (189)
.+.+++++.+|.++|++..++++||+|||..+++..++..++.++..+ .+++++++.+|++.|+..+......+.|+
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456788999999999999999999999999999998888888877765 47889999999999999999999999999
Q ss_pred hhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCCcccc-ccchHH
Q 042942 95 SEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKNLPIE-QMDKLW 167 (189)
Q Consensus 95 ~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~~~~~-~~~~~~ 167 (189)
.|..|.+.||....+.+.+..+|.+++..++..-. ..+...|.+.+....+++++.++ |+|+|... ++++++
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~ 220 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEE 220 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHH
Confidence 99999999999999999999999999988764211 12334799999888887776665 99999987 788888
Q ss_pred HHHHHHHHhhhh
Q 042942 168 GEQTVGRALVLE 179 (189)
Q Consensus 168 ~~~~~~~~~~~~ 179 (189)
++++++..++.+
T Consensus 221 A~~sl~~y~G~~ 232 (485)
T KOG0569|consen 221 ARKALKFYRGKE 232 (485)
T ss_pred HHHHHHHHhCCC
Confidence 888888777653
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-21 Score=153.30 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=132.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.+.++.+|+.+.+.+++....++.|+++||+|||++++++.+++.+++++++++++++.++++|+++|++.
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~ 108 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA 108 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcC-CccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMA-PPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+.....+.+.+ |+++|+++++++.....+|..++|.+++.+... .+||+.|++...+.++..+
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~ 176 (495)
T PRK14995 109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMG 176 (495)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHH
Confidence 998887777776665 789999999999999999999999998877643 4899999987766555433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=148.16 Aligned_cols=144 Identities=19% Similarity=0.207 Sum_probs=129.7
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|++.
T Consensus 38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 117 (406)
T PRK11551 38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGL 117 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhH
Confidence 46778899999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+...+....++.|++|+++|++++++.+.+..+|..+++.++..+.. ..+||+.|++.+++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 181 (406)
T PRK11551 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG---DAAWRHIFYVGGVGPLL 181 (406)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765543 34899998876654443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=146.26 Aligned_cols=145 Identities=24% Similarity=0.417 Sum_probs=129.9
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++.+.+++.|++.|++.+.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 101 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF 101 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence 56789999999999999999999999999999999999999999999999999966666657777999999999999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..+....++.|++|+++|++.++..+....+|..++|.++..+... .+||+.|++.+++.++..+
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY---FGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---CHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc---cccccccccccchhhhhhh
Confidence 9999999999999999999999999999999999999998877633 4899999888877776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=148.19 Aligned_cols=149 Identities=20% Similarity=0.256 Sum_probs=117.3
Q ss_pred cccccccc---CCchhHHHH---HHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHH--------
Q 042942 5 TNISNYCN---FDSQLLTTF---TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIY-------- 70 (189)
Q Consensus 5 p~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (189)
|.+.++++ .+..+.+.. .+..+++..++++++|+++||+|||+++.++..++++++++.++++++.
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (432)
T PRK10406 46 LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPA 125 (432)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Confidence 44555653 444443333 3444555569999999999999999999999999999999998877653
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-----CCcchHHHHHhhH
Q 042942 71 MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-----GGWGWRISLAMAA 145 (189)
Q Consensus 71 ~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~ 145 (189)
.++++|+++|++.|..++....+++|++|+++|++..++.+.+...|..+++.+...+.... ..++||+.|++.+
T Consensus 126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~ 205 (432)
T PRK10406 126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGA 205 (432)
T ss_pred HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 58889999999999999999999999999999999999988888888888777654433211 2469999999888
Q ss_pred HHHHHHHh
Q 042942 146 APASILTI 153 (189)
Q Consensus 146 ~~~~~~~~ 153 (189)
+++++...
T Consensus 206 ~~~ll~~~ 213 (432)
T PRK10406 206 VLAVVALW 213 (432)
T ss_pred HHHHHHHH
Confidence 77766544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=144.11 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=132.6
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++..+.++++.+++.|++.|++.
T Consensus 28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 107 (385)
T TIGR00710 28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA 107 (385)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence 46778899999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|++..+..+....+|..+++.++..+... .+||+.+++.++...+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766533 4899998877666554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=149.82 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=131.1
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.
T Consensus 46 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 125 (434)
T PRK11663 46 MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQ 125 (434)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+..++....++.|++|+++|++++++.+.+..+|..+++.+...+.. ..+||+.|.+.+++.++
T Consensus 126 g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~ 189 (434)
T PRK11663 126 GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---HYGWRYGMMIAGIIAIV 189 (434)
T ss_pred HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHH
Confidence 98889889999999999999999999999999999999988766553 35899999887765543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=147.67 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=137.9
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 3 EDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
+.|.+.++.++|+++.+.+.+.+++.|.++.++.|.++||.+.|+.+..++++.++..++++++++.+.+.++.++.|..
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~f 130 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWF 130 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhh--hhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLN--YGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+|..+|.+...+..|+|+++||+..++++.+-++|..+.|++. ..+. .+.+||..|++.++++++..+
T Consensus 131 Qg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~---~~~~w~~~f~~pgiiaiival 200 (448)
T COG2271 131 QGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA---FHGGWRAAFYFPGIIAIIVAL 200 (448)
T ss_pred hcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888887 3333 344899999999988887766
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=145.06 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=132.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++.+++++++.+++.|++.|++.
T Consensus 26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~ 105 (382)
T PRK10091 26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH 105 (382)
T ss_pred hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|+++++....+..+|..++|.++..+... .+||+.|.+.+++..+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~ 172 (382)
T PRK10091 106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHH
Confidence 988888888999999999999999999999999999999987766543 4899999988776655433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=148.21 Aligned_cols=144 Identities=18% Similarity=0.288 Sum_probs=129.7
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++|++.|++.
T Consensus 41 ~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~ 120 (426)
T PRK12307 41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGM 120 (426)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+..++....++.|++|+++|+++.++.+.+..+|.++++.+...+.. ..+||+.|++..+..++
T Consensus 121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~ 184 (426)
T PRK12307 121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE---AYGWRAAFFVGLLPVLL 184 (426)
T ss_pred hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888655543 34899999876544433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=145.85 Aligned_cols=143 Identities=14% Similarity=0.065 Sum_probs=127.2
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+++++++|+++.++..+++.+++.+++++.|+++||+|||+++..+..+.+++.++.+++++++.+++.|++.|++.
T Consensus 32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~ 111 (393)
T PRK09705 32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI 111 (393)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+...+....++.|++| ++|+++++.+..+...|..+++.++..+.... .+||..+...++..+
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 112 GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAV 174 (393)
T ss_pred HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Confidence 9999988899999997 78999999999988888888888876655322 279987765544433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=146.42 Aligned_cols=137 Identities=39% Similarity=0.678 Sum_probs=118.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhhhhhhhhh
Q 042942 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
.+..+.+++.+++.++..+++++.|+++||+|||++++++.++..++.++..+. .+++.+++.|++.|++.+...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~ 147 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence 448899999999999999999999999999999999999999999998888553 34558899999999999999999
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhh---hhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLN---YGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
...++.|++|+++|+++.++.+.+..+|..+++.++ .... +..+||+.|++.++..++..
T Consensus 148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~~~~~ 210 (481)
T TIGR00879 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPAGLLF 210 (481)
T ss_pred HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 3332 33589999988665554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=141.62 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=128.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF-----NIYMLIFGRVLL 79 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 79 (189)
|.+..+.+.++.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++.++..+.. +++.+++.|++.
T Consensus 23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 445567888999999999999999999999999999999999999999999888888887777 899999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
|++.+...+...+++.|++|+++|++..++.+.+..+|..++|.++..+... .+||+.+++.++..++.
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776543 48999988776655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-24 Score=169.39 Aligned_cols=160 Identities=31% Similarity=0.574 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHhhhhhhhhhhhhH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF---NIYMLIFGRVLLGVGIGFANQSVPL 92 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~ 92 (189)
.+.++..+...++..+|+++.|+++||+|||+.+.++.++..++.++..+++ +++.+.++|++.|++.|...+..+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4578899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCCccccccchH
Q 042942 93 YLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKNLPIEQMDKL 166 (189)
Q Consensus 93 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~~~~~~~~~~ 166 (189)
++.|..|+++|++..++.+.+..+|.+++..++..+....++..||+.+.+.++++++..+ |+|+|...+++.+
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~ 205 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDE 205 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccc
Confidence 9999999999999999999999999999988877664443345799999888888755544 9999999988888
Q ss_pred HHHHHHHHH
Q 042942 167 WGEQTVGRA 175 (189)
Q Consensus 167 ~~~~~~~~~ 175 (189)
++++..++.
T Consensus 206 ~A~~~l~~~ 214 (451)
T PF00083_consen 206 EAEKVLRKL 214 (451)
T ss_pred ccccccccc
Confidence 877766663
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-21 Score=148.04 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=129.7
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.++..+++.++.++.|+++||+|||+++.++.++..++.++..+.++++.+++.|++.|++.
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 97 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQ 97 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHH-HhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDN-LLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+...+....++.|++|+++|+++.++.+.+..+|..+++ .++..+.. ..+||+.|++.+++.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 45544432 248999988777655543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=141.28 Aligned_cols=145 Identities=15% Similarity=0.129 Sum_probs=125.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.
T Consensus 26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 105 (377)
T TIGR00890 26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+..++.....+.|++| ++|+++.++...+..+|..+++.+...+. +..+||+.|.+.+++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~ 170 (377)
T TIGR00890 106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVI---NLEGVPAAFIYMGIIFLLVI 170 (377)
T ss_pred HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHH---hcccHHHHHHHHHHHHHHHH
Confidence 9888878888889887 67999999999999999876554433332 23489999998877665544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=148.15 Aligned_cols=146 Identities=21% Similarity=0.229 Sum_probs=133.2
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++++.+++.+.+.++..++.++.|+++||+|||+++.++.++..++.++.+++++++.+++.|+++|++.
T Consensus 25 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~ 104 (485)
T TIGR00711 25 IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG 104 (485)
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+...+....++.|++|+++|+++.+++.....+|..++|.++..+.. +.+||+.|++.+.+.++..
T Consensus 105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~w~~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---NYHWRWIFLINVPIGIIVV 170 (485)
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc---CcCceehhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999876653 3589999988766554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=140.86 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=131.2
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.+++.++..++.++.|+++||+|||+++..+..+.+++..+..+.++++.+++.|++.|++.
T Consensus 14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~ 93 (377)
T PRK11102 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAA 93 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+...+....++.|++|+++|++..++.+....+|..++|.++..+... .+||+.|++.+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 94 AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHH
Confidence 999899999999999999999999999999999999999998766543 48999988776665544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=141.72 Aligned_cols=143 Identities=24% Similarity=0.247 Sum_probs=128.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++.+.+++.++..++..++.++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL 119 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccc
Confidence 46677889999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+...+....++.|++|+++|+++.++.+....+|..+++.++..+... .+|+..+++.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~ 182 (398)
T TIGR00895 120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPL 182 (398)
T ss_pred ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHH
Confidence 999999999999999999999999999999999999999997665533 489888877654333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=141.21 Aligned_cols=147 Identities=20% Similarity=0.158 Sum_probs=130.8
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 3 EDTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 3 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
..|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||+.+..+..+..++..+....++.+.+++.|++.|++
T Consensus 25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~ 104 (392)
T PRK10473 25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG 104 (392)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 35777889999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
.+...+....++.|++|+++|++..+..+....+|..++|.++..+.. ..+|++.+++.+++..+..
T Consensus 105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~ 171 (392)
T PRK10473 105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVL 171 (392)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHH
Confidence 998888899999999999999999999999999999999999776543 2489998888766555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=140.28 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=129.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.++++.++.+.++..+.+.+++.++.++.|.++||+|||+++.++..+..++.++..+.++++.+++.|++.|++.
T Consensus 36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 115 (406)
T PRK15402 36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGL 115 (406)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHh
Confidence 35577899999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|.+|+++|.+..++......++..++|.++..+... .+||+.+++.+++.++..+
T Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 116 CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFF 182 (406)
T ss_pred hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHH
Confidence 888888889999999999999999988888888889999987665543 4899999887766655443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=143.66 Aligned_cols=141 Identities=20% Similarity=0.290 Sum_probs=115.0
Q ss_pred cCCchhHHHHH-----HHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHH
Q 042942 12 NFDSQLLTTFT-----SSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIY--------MLIFGRVL 78 (189)
Q Consensus 12 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l 78 (189)
+.++. .+++. ++.+++..+++++.|+++||+|||+++.++.++++++.++.++++++. .++++|++
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 134 (438)
T PRK09952 56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAI 134 (438)
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 45555 34443 345567789999999999999999999999999999999999998876 58889999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-----CCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-----GGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+|++.+..++....++.|++|+++|++..+..+.+..+|.+++..+...+.... .+++||+.|++.+++.++...
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~ 214 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW 214 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888876654433211 246999999988877655433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=144.17 Aligned_cols=145 Identities=18% Similarity=0.299 Sum_probs=130.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++.+.+++.+.+.+++.++.++.|+++||+|||++++++.++.+++.++..+.++++.+++.|++.|++.
T Consensus 43 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 122 (496)
T PRK03893 43 LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGM 122 (496)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+..++....++.|.+|+++|+++.++......+|..+++.+...+.. ..+||+.|.+.++..++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~ 187 (496)
T PRK03893 123 AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP---VWGWRALFFIGILPIIFA 187 (496)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999776653 358999988755544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=142.54 Aligned_cols=142 Identities=17% Similarity=0.119 Sum_probs=125.5
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--FNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++++++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.++..+. .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 789999999999999999999999999999999999999999999998888776543 457788999999999999999
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+....++.|++|+++|++++++.+.+..+|..+++.++..+.... .+||+.|++.+++.++..+
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~ 213 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSL 213 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999977665321 2899999988777665544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-19 Score=137.12 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=119.5
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hh-----hhhHHHHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GA-----AFNIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~l 78 (189)
+++++|+|+++.+++.+.+.+++.+++++.|+++||+||||++..+.+...++.+.. .. ..+++.+++.|++
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999888776654322 11 3578889999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+|++.+...+....++.|++|+++|+++++..+.+...|..++|.++..+... .+|+..+.+..+..++
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~ 190 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHH
Confidence 99999988888888999999999999999999999999999999998766543 4899877765554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-20 Score=147.46 Aligned_cols=148 Identities=11% Similarity=-0.033 Sum_probs=125.7
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-----AFNIYMLIFGRVL 78 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l 78 (189)
.|.+.+++|+++++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++..+..++ +++++.+++.|++
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 131 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWAL 131 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999888888777766554 5789999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.|++.+...+....+++|++|+++|++++++.+.+..+|..+++.+...+.......+||..|.+.+++.++.
T Consensus 132 ~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~ 204 (467)
T PRK09556 132 SGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALII 204 (467)
T ss_pred HHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888654332211125888887766555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=138.86 Aligned_cols=144 Identities=17% Similarity=0.132 Sum_probs=123.1
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--------FNIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l 78 (189)
+++++|.++.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.....+. .+++.+++.|++
T Consensus 42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (399)
T PRK05122 42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLL 121 (399)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998887776554432 256678899999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|++.+...+....++.|+.|+++|+++.++.+....+|..+++.++..+... .+|+..+.+.++..++..+
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~ 193 (399)
T PRK05122 122 LGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLL 193 (399)
T ss_pred HHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999998766543 4899988877666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=139.23 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=128.9
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++..+.++++.+++.|++.|++.
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~ 109 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVS 109 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhh
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+...+....++.|++|+++|++..+..+....+|..++|.+...+.. ...+||+.|...+++.++..
T Consensus 110 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~gw~~~f~~~~~~~~~~~ 176 (394)
T PRK03699 110 GITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--RSIEWYWVYACIGLVYVAIF 176 (394)
T ss_pred HhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHH
Confidence 98888888999999999999999999888888888888887654432 12489999988776665443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=137.05 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=128.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+..+..++.++..+.++++.+++.|++.|++.
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGT 110 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 36677899999999999999999999999999999999999999999999999999998888899999999999999998
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+...+....+..|.+++++|+++.+..+.+..++..++|.++..+.. ..+||+.|++.++...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 111 GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LFGWRACYLFLLLLGAG 174 (394)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHH
Confidence 88878778889999999999999999999999999999999876653 24899999887665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=139.44 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=129.5
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA---AFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G 80 (189)
.|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++..+.+++.++... .++++.+++.|++.|
T Consensus 26 ~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G 105 (410)
T TIGR00885 26 VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILT 105 (410)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999877643 357899999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-----------------------CCcch
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-----------------------GGWGW 137 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------------------~~~~w 137 (189)
++.+..++....++.+..|+++|++..++.+.+.++|..++|.++..+.... +..+|
T Consensus 106 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 185 (410)
T TIGR00885 106 AGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASV 185 (410)
T ss_pred hhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976553211 11369
Q ss_pred HHHHHhhHHHHHHHH
Q 042942 138 RISLAMAAAPASILT 152 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (189)
|++|.+.+++.++..
T Consensus 186 ~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 186 QTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988777665543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=136.58 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=116.7
Q ss_pred cc-ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhh
Q 042942 5 TN-ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVLLGVG 82 (189)
Q Consensus 5 p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~ 82 (189)
|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.++.++.+ +++.+++.|++.|++
T Consensus 25 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~ 104 (366)
T TIGR00886 25 VQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA 104 (366)
T ss_pred hHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 53 7789999999999999999999999999999999999999999999999999999999988 999999999999998
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-------CCcchHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-------GGWGWRISLA 142 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~w~~~~~ 142 (189)
.+. .+....++.|++|+++|+++.++......+|..+++.++..+.... .+.+||+.++
T Consensus 105 ~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 105 GGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred chh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 654 4567789999999999999999988777777777766654433210 1347998883
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=139.88 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=131.9
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF--NIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~ 85 (189)
..++++++++.+++.+.++.|+++++++.|++.||+|-|+++.++.++.++++++.+++. +++.+++.|+++|++.+.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 567899999999999999999999999999999999999999999999999999998764 456778999999999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+|....+.+.|.|+++|++..++...+..+|.+++.++++.+.+. ..||++.|++.+.++++..+
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~ 210 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFI 210 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887777654 35999999999999888776
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=140.41 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=131.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.++..+.++++.+++.|+++|++.
T Consensus 33 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~ 112 (471)
T PRK10504 33 LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGG 112 (471)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 46677889999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+....++.|++|+++|+++.++.....++|..++|.+++.+... .+||+.|.+......+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~ 179 (471)
T PRK10504 113 AMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAI 179 (471)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776643 4899999887655544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=136.07 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=128.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.+++|.++++.++..+++.+++.++++++|+++||+|||+.+..+..+..++.++..+.++++.+++.|++.|++.+
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~ 109 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVC 109 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhH
Confidence 55678899999999999999999999999999999999999999999999999999888888999999999999999988
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+....++.|++|++++++..+.......+|..++|.++..+... .+||+.+++.+++.++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~ 175 (401)
T PRK11043 110 SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLIL 175 (401)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Confidence 87777788999999999999988888888889999999988766533 4899998887766655543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-19 Score=137.04 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=124.9
Q ss_pred cccccccccCCchh-HHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 4 DTNISNYCNFDSQL-LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 4 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
.|.+.+++|+++++ .+.+.++++.+|++..++.|+++||+|.|+++.++.+.+++..++.+++++...+.+.|++.|++
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGva 128 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVT 128 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAM 143 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~ 143 (189)
.|..+ ....++..++|+++|+++.++...+..+|.+++++++..+.. ++||....+
T Consensus 129 EA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~L 184 (511)
T TIGR00806 129 MAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTL 184 (511)
T ss_pred HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHH
Confidence 99999 889999999999999999999999999999999999877432 478765543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-19 Score=140.36 Aligned_cols=149 Identities=15% Similarity=0.013 Sum_probs=123.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+++++++.+++.|++.|++.
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~ 138 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL 138 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999988888899999999999999988
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc----c--cCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK----I--NGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+... ....+++|++|+++|++++++.+...++|..+++.+...+.. . .+..+||+.|++.+++.++..+
T Consensus 139 ~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 139 ATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred HhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence 7643 456688999999999999999887777776666555433211 1 1124899999998877765544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=137.04 Aligned_cols=146 Identities=20% Similarity=0.346 Sum_probs=116.8
Q ss_pred cccccccccCCchhHHHH-HHHHH-----HHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHH-------
Q 042942 4 DTNISNYCNFDSQLLTTF-TSSLY-----IAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIY------- 70 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~------- 70 (189)
.|.+.++++.++.+.+.+ .+... +...+++++.|+++||+|||+.++.+.++.+++.++.+++++++
T Consensus 38 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 117 (434)
T PRK15075 38 ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAP 117 (434)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 467788898887765433 33222 22346889999999999999999999999999999999988876
Q ss_pred -HHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc-----cCCcchHHHHHhh
Q 042942 71 -MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI-----NGGWGWRISLAMA 144 (189)
Q Consensus 71 -~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~w~~~~~~~ 144 (189)
.++++|+++|++.+...+....+++|++|+++|++..++.+.+..+|..+++.++..+... .++++||+.|++.
T Consensus 118 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 118 LLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 4688999999999999998899999999999999999999888888887777776654321 1346999999876
Q ss_pred HHHHH
Q 042942 145 AAPAS 149 (189)
Q Consensus 145 ~~~~~ 149 (189)
.+...
T Consensus 198 ~~~~~ 202 (434)
T PRK15075 198 CLIVP 202 (434)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=134.12 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=125.9
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.++..+.++++.++++|.+.|.+.+.
T Consensus 33 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 112 (395)
T PRK10054 33 YLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSV 112 (395)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999988888889998888889888888777
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
..+....+..|..|+++|+++.++.+...++|..++|.++..+.. .+|+..|.+.++..++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~ 174 (395)
T PRK10054 113 FSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFP 174 (395)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999887653 37998888776655544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=131.16 Aligned_cols=144 Identities=27% Similarity=0.397 Sum_probs=130.2
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.++++.++++.+++.+...++..++.++.|+++||+|||+.+.++..+..++.+...+.++++.+++.|++.|++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 102 (352)
T cd06174 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGG 102 (352)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccc
Confidence 55667789999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
...+....++.|++|+|+|++..+..+....+|..++|.++..+... .+|++.+.+.+++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 166 (352)
T cd06174 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLL 166 (352)
T ss_pred cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776643 36998888766655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=137.47 Aligned_cols=144 Identities=18% Similarity=0.116 Sum_probs=120.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA----FNIYMLIFGRVLL 79 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 79 (189)
.|.+.++ |+++.+.++..+++.+++.+++++.|+++||+|||++++++.++.+++.++.++. .+++.+++.|++.
T Consensus 52 ~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (452)
T PRK11273 52 MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 130 (452)
T ss_pred hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 3666777 9999999999999999999999999999999999999999999999998888765 3677888999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHH-HHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGV-LSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
|++.+...+.....+.|++|+++|++++++++.+..+|. ..+|.++..+... .+||+.|++.+++.++.
T Consensus 131 gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILV 200 (452)
T ss_pred HHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Confidence 999998888788889999999999999999999998886 4555543322221 28999998876655543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=132.18 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=128.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+++++|+++.+.++..++..+...+.+++.|.++||+|||+++..+.++..++.+...+.++++.+++.|+++|++.+..
T Consensus 37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 116 (400)
T PRK11646 37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF 116 (400)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999988899999999999999999888
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.+...+++.|++|+++|+++.++.+....+|..++|.++..+.. ++|++.|++.++..++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999877652 38999998877665544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=134.23 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=113.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G 80 (189)
.|.+++++|+++.+.++..+.+.+++.+++++.|++.||+|||+++..+..+++++.+++ ..+++++.++++|++.|
T Consensus 49 ~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G 128 (438)
T PRK10133 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999999999999999999999775 45789999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
++.+...+..+.++.|+.|+++|.+.++..+..+.+|..+++.++..
T Consensus 129 ~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998777777778899999999999999988654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-18 Score=131.96 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=118.4
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
.+.++++.++.+.+++.+.+.+.+.+..++.|+++||+|||++++++.++..++.+.+.+..+. ++.|+++|++.+.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~ 104 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAA 104 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3456788888899999999999999999999999999999999999999998888877666554 6789999999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAP 147 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 147 (189)
..|...+++.|++|+++|++++++.+....+|..++|.+++.+... .|+..+.+.+..
T Consensus 105 ~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~ 162 (393)
T PRK11195 105 YSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALI 162 (393)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877643 377666655543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=129.45 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=117.6
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|.++++++++.+.+.+++.+++++.|+++||+|||+++..+.++.+++....+++++++.+++.|++.|++.
T Consensus 29 lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 108 (381)
T PRK03633 29 VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGC 108 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
+...+.....+.+..++++|+++++.+..+.++|..++|.++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 109 AMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98888877788888999999999999999999999999999876653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=136.28 Aligned_cols=145 Identities=18% Similarity=0.053 Sum_probs=121.7
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA----FNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G 80 (189)
|.+++ .|+++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++..+. .++..+.+.|++.|
T Consensus 51 p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 129 (438)
T TIGR00712 51 PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNG 129 (438)
T ss_pred HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 55554 59999999999999999999999999999999999999999999999888776653 45677788999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
++.+..++....++.|++|+++|++++++.+....+|..+++.+...... ...+||..|++.+++.++..
T Consensus 130 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 130 WFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--WFNDWHAALYFPAICAIIVA 199 (438)
T ss_pred HHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHH
Confidence 99998888888999999999999999999999999998888776443221 12389999998777665543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=132.77 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=133.1
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+.++.++...+.+.+.++++++|+++.++++.+.||++..+.+....+++.+..++....+|++.+++.|+++|+.++..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~ 151 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGG 151 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc
Confidence 45778888999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc---cCCcchHHHHHhhHHHHHHHHh
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI---NGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+|....+++.|+.+++|++.++++..+..+|++++.+++..+... ....||||.|++.++++++..+
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997764321 1235999999999999888776
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=127.86 Aligned_cols=144 Identities=21% Similarity=0.245 Sum_probs=122.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.|.+.+++|+++++.+++.+++.+++.++.++.|+++||+|||+++.++.++..++.+.. ..++.+.+++.|++.|++.
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~ 101 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGI 101 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999999999999999999999998888887776 6688888899999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+...+..+.++.|++| ++|+++.++.+....+|..+++.++..+....+ .+||+.|...++..++
T Consensus 102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 102 AIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALL 166 (355)
T ss_pred HHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHH
Confidence 9888888888899886 689999999999999999999888765543221 2499888766654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=133.35 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=119.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA------FNIYMLIFGRV 77 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 77 (189)
.|.+++++|++.++.+++.++. ..+...+++.|++.||+|||+++.++.+++.++.++.+++ .+++.+++.|+
T Consensus 50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~ 128 (591)
T PTZ00207 50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG 128 (591)
T ss_pred HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 4677889999999999988764 3445677789999999999999999999999999999886 58899999999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHH-HHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 78 LLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLS-DNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 78 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+.|++.+...+.....+.+++| ++||++.++...+.++|..+ +++...++. .+|+..+++.+++..++.+
T Consensus 129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHH
Confidence 9999999888888889999997 78999999999999999865 555544443 2577777777776666554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=127.98 Aligned_cols=144 Identities=19% Similarity=0.111 Sum_probs=122.1
Q ss_pred ccccccccCCchh-----HHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 042942 5 TNISNYCNFDSQL-----LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLL 79 (189)
Q Consensus 5 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (189)
|.+.+++|++..+ .+++.++..+++.+++++.|+++||+|||+++..+..+..++.++..+.++++.+++.|++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (408)
T PRK09874 38 PLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALL 117 (408)
T ss_pred HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5556778887654 47888999999999999999999999999999999999999988888888999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
|++.+ ..+....++.|.+|+++|+++.++.+....+|..++|.++..+... .+||+.+++.+++.++..
T Consensus 118 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 186 (408)
T PRK09874 118 GLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCF 186 (408)
T ss_pred HHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHH
Confidence 99765 4566778889999999999999999999999999999998766533 489999888776655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-17 Score=126.96 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=117.3
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILV-GGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
+++++|.++.+.+++.+.+.+...+.+++.|.++||+||||.+++ +..+..++.++.+++++++.+++.|++.|...+.
T Consensus 24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 103 (375)
T TIGR00899 24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAST 103 (375)
T ss_pred HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhh
Confidence 567899999999999999999999999999999999999887665 5555566777778888999988999998887777
Q ss_pred hhhhhhHHHhhcCCccccchh--HHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAF--NIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
..+....+..|+.|++.|.+. .+......++|..++|.++..+... .+||+.|++.+++.++..
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~ 169 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCG 169 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHH
Confidence 778777888899887777654 5777778889999999998766533 489999998877655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=133.99 Aligned_cols=143 Identities=16% Similarity=0.136 Sum_probs=124.1
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIF-GRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~ 83 (189)
|.+.+++|.++++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++.+++++++.+++ .|++.|++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~ 122 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGL 122 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 5667889999999999999999999999999999999999999999999999999999888888888765 568999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+...+....++.++++ ++|+++.++.+.+..+|..++|.++..+... .+||+.|++.+++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 123 AFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHC 186 (455)
T ss_pred hhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHH
Confidence 8776777788889996 7899999999999999999998887665533 48999999888766544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=133.09 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=120.0
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAFNIYM-LIFGRVLLGVGIG 84 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~~ 84 (189)
+++++|+++++.+++.+.+.....+..+++|+++|| +||||+++++.+++.++.+++++..+... ++++|+++|++.|
T Consensus 41 l~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g 120 (489)
T PRK10207 41 FVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNG 120 (489)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccc
Confidence 456789999999999999998888889999999999 99999999999999999999888765443 5578999999999
Q ss_pred hhhhhhhHHHhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHH
Q 042942 85 FANQSVPLYLSEMAPPKN--RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAA 146 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 146 (189)
...+...+++.|.+|+++ |+++.++++.+.++|..++|.+++.+... .|||+.|++.++
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i 181 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGA 181 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHH
Confidence 999999999999998874 57789999999999999999998877654 489999988643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-17 Score=127.43 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=117.2
Q ss_pred cccc-cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q 042942 6 NISN-YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-----FNIYMLIFGRVLL 79 (189)
Q Consensus 6 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ 79 (189)
.+.+ ++|+|+++.+++.++..+++.++.++.|++.||+|.|+++.++.++.++..+..+++ ++++.+++.|++.
T Consensus 59 ~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~ 138 (462)
T PRK15034 59 NLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLC 138 (462)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHH
Confidence 3434 799999999999999999999999999999999999999999999999999988876 7999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc-----c-c---------cCCcchHHHHHhh
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE-----K-I---------NGGWGWRISLAMA 144 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~-~---------~~~~~w~~~~~~~ 144 (189)
|++ +..++.....+++++|+++||+++++.....++|..+++++...+. . . .+..+||...++.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~ 217 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIW 217 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHH
Confidence 998 6788889999999999999999999997666666655544432211 0 0 0133577776666
Q ss_pred HHHHHHHH
Q 042942 145 AAPASILT 152 (189)
Q Consensus 145 ~~~~~~~~ 152 (189)
+++.++..
T Consensus 218 ~~~~iv~~ 225 (462)
T PRK15034 218 VPLLAIAT 225 (462)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=127.46 Aligned_cols=141 Identities=23% Similarity=0.347 Sum_probs=112.7
Q ss_pred CCchhHHHHHHH-----HHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHH
Q 042942 13 FDSQLLTTFTSS-----LYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIY--------MLIFGRVLL 79 (189)
Q Consensus 13 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ 79 (189)
.++++.+...+. .+++..+++++.|+++||+|||+++.++.++..++.++.++.+++. .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 444555554432 3344457899999999999999999999999999999998887764 478899999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc-----cCCcchHHHHHhhHHHHHHHHh
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI-----NGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
|++.+...+....++.|++|+++|++..+..+.+..+|..+++.++..+... ...++||+.+.+.+++.++...
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998886554321 1245899999887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-17 Score=129.20 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=114.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSAL---GGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
++++|++..+..+..+...++..++.++.|+++||+|||+++.++.++..++... ....++...+++++++.|++.+
T Consensus 278 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 278 SHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3567888877788888888999999999999999999999988887654433322 1223456677788888888877
Q ss_pred hhhhhhhHHHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCC
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKN 157 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~ 157 (189)
........++.|.+|++.|+++.+. ++.+ .++..++|.+...+.... .+|+..+++..+++++..+ |+++
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~-~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNIS-VLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 7777778889999999999999997 5554 444556666654443222 1466554443333333222 8888
Q ss_pred ccccc-----cchHHHHHHHHHHh
Q 042942 158 LPIEQ-----MDKLWGEQTVGRAL 176 (189)
Q Consensus 158 ~~~~~-----~~~~~~~~~~~~~~ 176 (189)
+..++ ++.+++++.+.+.+
T Consensus 435 ~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 435 RPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred CCCCCccccccchhhHHHHhhccc
Confidence 87754 66666666655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=140.44 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=128.1
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh----------------
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF---------------- 67 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---------------- 67 (189)
.|.++++++++.++.+++.+.+.+++.++.++.+++.||+||||.+.++.++++++.++.++.+
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~ 135 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG 135 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence 5788999999999999999999999999999999999999999999999999999998887642
Q ss_pred -----------------------------------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHH
Q 042942 68 -----------------------------------NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQV 112 (189)
Q Consensus 68 -----------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~ 112 (189)
.+..++++|+++|++.+..++....++.|++|+++|++..++++.
T Consensus 136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~ 215 (633)
T TIGR00805 136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES 215 (633)
T ss_pred cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence 245677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCC-----------------c--chHHHHHhhHHHHHHHH
Q 042942 113 SVGIGVLSDNLLNYGTEKINGG-----------------W--GWRISLAMAAAPASILT 152 (189)
Q Consensus 113 ~~~~g~~~~~~~~~~~~~~~~~-----------------~--~w~~~~~~~~~~~~~~~ 152 (189)
...+|..+++.++..+.....+ | +|+..|++.+++.++..
T Consensus 216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765532210 1 37777877776665543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=123.52 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=108.1
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
+.+.+....|.+.+.+.++..+.++.+|.++||+|||.+++++++..++...+.+++.|+..+...|++.|+.-+... +
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~-v 140 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS-V 140 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH-H
Confidence 334456678899999999999999999999999999999999999999999999999999666666999999887654 5
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
..++++|+.++|+|+.+++..+..+.+|.++||++|+.+..
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 78899999999999999999999999999999999988776
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=129.75 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=122.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 11 CNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
+|+++.+++++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.++.++++.+++.+++.|++.+...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 89999999999999999999999999999999 89999999999999999999988888888888999999999999999
Q ss_pred hhHHHhhcCCccc---cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 90 VPLYLSEMAPPKN---RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 90 ~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
..++++|++|+++ |+++.++++.+.++|..++|.++..+... .+|++.|.+.++..+
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~ 182 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMV 182 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHH
Confidence 9999999998764 88899999999999999999998776543 489999988765433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=124.73 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=108.0
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG---A-AFNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~G 80 (189)
|.+.+++|+++++.+++.+.+.+++.++.++.|++.||+||||++..+..+.+++.++.. . ..+++.+++.|++.|
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G 116 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG 116 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999888876542 2 257788889999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHH-HHHHHhhhhcc
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGV-LSDNLLNYGTE 129 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~ 129 (189)
++.+...+....++.|.+|+++|++++++.+...++|. .++|.++..+.
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888777777888999999999999999999999996 57888865544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=125.24 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=130.6
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
+.+-+++++|++..+..+...+.+++.|.+.||+|+|-.+++|+.++...++++++..++++++++|.++|++.+...+.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCccc-cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 90 VPLYLSEMAPPKN-RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 90 ~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..+++++.+|+++ |++++|+...+.++|..++|.+|+.+.+.. |.+.+|.+.++++++-..
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~ 241 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGA 241 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHH
Confidence 9999999999776 799999999999999999999999988765 888999998888776554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=126.69 Aligned_cols=146 Identities=12% Similarity=-0.045 Sum_probs=121.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-----AFNIYMLIFGRVLL 79 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~ 79 (189)
|.+.++++.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++...... .++++.+++.|++.
T Consensus 41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 120 (417)
T PRK10489 41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD 120 (417)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4556677888999999999999999999999999999999999999888777776654432 45778888999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
|++.+...+....++.|+.|+++|+++.++.+....+|..++|.+++.+... .+|++.+.+.++..++..+
T Consensus 121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHH
Confidence 9998888888889999999999999999999999999999999998766543 3788888776665554433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=127.44 Aligned_cols=148 Identities=29% Similarity=0.392 Sum_probs=119.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF-------NIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~~ 84 (189)
++++...+.+..+.++|.++|+++.|++.||+|||+++...+++.++++++.++.. -..++...|+++|+|.|
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence 35677788899999999999999999999999999999999999999998777642 13567889999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh----cccccC--------CcchHHHHHhhHHHHHHHH
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG----TEKING--------GWGWRISLAMAAAPASILT 152 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~--------~~~w~~~~~~~~~~~~~~~ 152 (189)
+.+|...++.+|....+.||...+......++|...+.+++.. +....+ +.-||..+.+.+++++++.
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l 239 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL 239 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887666666655555544433 222111 2369999999999998888
Q ss_pred h------hcCCcc
Q 042942 153 I------ETKNLP 159 (189)
Q Consensus 153 ~------e~~~~~ 159 (189)
. |++++.
T Consensus 240 y~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 240 YFRLKMPETARYT 252 (538)
T ss_pred HhhhcCCcchhHH
Confidence 7 676665
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=118.90 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=147.0
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+....+.+..+.+++......+..+++..+|.++|++|||+.+.+..+..++..++.+.++|+..+++.|.+.|+|.|
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g 181 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG 181 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh------hcCCc
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI------ETKNL 158 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------e~~~~ 158 (189)
+ .|...++-.|..|..+|...+-.. ..+.+|.+....+.+..... .||||.+.....+..+... |+|++
T Consensus 182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf 256 (528)
T KOG0253|consen 182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPRF 256 (528)
T ss_pred C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcch
Confidence 8 788889999999999998877666 89999999999998876644 3899988777755544443 99999
Q ss_pred cccccchHHHHHHHHHHhhhh
Q 042942 159 PIEQMDKLWGEQTVGRALVLE 179 (189)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ 179 (189)
...+++++++.+.+++..+.+
T Consensus 257 ~~~~G~~~kAletL~kiArmN 277 (528)
T KOG0253|consen 257 YLAKGDDYKALETLHKIARMN 277 (528)
T ss_pred hhhcCChHHHHHHHHHHHHhc
Confidence 999999888877777665533
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=104.64 Aligned_cols=129 Identities=28% Similarity=0.358 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCcc
Q 042942 22 TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPK 101 (189)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~ 101 (189)
.+.+.++..++.++.+++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34566788899999999999999999999999999888888888888899999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 102 NRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+|++..+..+....+|..+++.+...+.. ..+|++.+.+.+....+..+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876653 34798888877666555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=116.00 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=115.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-----cchhHH-HHHHHHHHHHHHHhhhh---hhHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKASI-LVGGTAFLAGSALGGAA---FNIYMLIF 74 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~ 74 (189)
.|.+.+++|+|.++.++..+. .+...+ .+++|+++||+ ||||.+ +.+.++.++.....++. .+.+.+..
T Consensus 11 ~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~ 88 (356)
T TIGR00901 11 LPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAG 88 (356)
T ss_pred HHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 466778999999999999755 444444 99999999998 899874 56677777766666555 45556667
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccC-----CcchHHHHHhhHHHHH
Q 042942 75 GRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKING-----GWGWRISLAMAAAPAS 149 (189)
Q Consensus 75 ~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~w~~~~~~~~~~~~ 149 (189)
..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+....+ .++||..|++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l 168 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL 168 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence 77788888888888889999999999999999999999999999999999866554332 2349999998887666
Q ss_pred HHHh
Q 042942 150 ILTI 153 (189)
Q Consensus 150 ~~~~ 153 (189)
+..+
T Consensus 169 ~~~~ 172 (356)
T TIGR00901 169 PGLL 172 (356)
T ss_pred HHHH
Confidence 5443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=124.38 Aligned_cols=144 Identities=23% Similarity=0.265 Sum_probs=117.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
+.+..++|-+ ++..|+.+...++..++.++.|.++|.||||.+++.+.++..++.++.+.++|...++++..+.|++.|
T Consensus 68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG 146 (599)
T PF06609_consen 68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAG 146 (599)
T ss_pred HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhH
Confidence 3455666655 577899999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
... .....++|..|.|.|+...++...........++.++..+.. +.+|||.|++..+...+.++
T Consensus 147 ~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 147 VQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHH
Confidence 665 456668999999999887776666555555566777654432 34899999988776655444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=119.39 Aligned_cols=139 Identities=14% Similarity=0.241 Sum_probs=111.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~ 85 (189)
.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.+..+ +...+.++..+..++.+.
T Consensus 37 ~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 37 TNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccc
Confidence 456899999999999999999999999999999999 999999999999999887665432 223333344444556666
Q ss_pred hhhhhhHHHhhcCCcc--ccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 86 ANQSVPLYLSEMAPPK--NRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
..+..+++++|.+|++ +|.++.++.+...++|..++|.+...+... .+|++.|.+.++..+
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~ 179 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMI 179 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHH
Confidence 6677788999999976 689999999999999999999998777543 489999988664433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=120.65 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=115.9
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~ 84 (189)
+++++|+++++.+++.+.+........+++|+++|| +|||+++.++.++.+++..+++++. +.+.+++.+++.|++.+
T Consensus 48 l~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g 127 (500)
T PRK09584 48 LVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNG 127 (500)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhh
Confidence 457789999988888887776666667899999999 5999999999999999988887764 45667778999999999
Q ss_pred hhhhhhhHHHhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 85 FANQSVPLYLSEMAPPKN--RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
...+....++.|++|+++ |..+.++++.+.++|..++|.+++.+... .|||+.|.+.++...+
T Consensus 128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLI 192 (500)
T ss_pred cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHH
Confidence 888888899999998654 44678888999999999999998877643 4899999987754333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=116.36 Aligned_cols=147 Identities=15% Similarity=0.064 Sum_probs=119.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN---IYMLIFGRVLLGV 81 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~ 81 (189)
+.+.+++++|++|.+++.++..+...+..++.|.+.||||.|++..++.++..+-.+..+++.+ ++++++++++.|+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~ 117 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL 117 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence 5567899999999999999999999999999999999999999999999999999988887644 4599999999999
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+.+. +.+...++++++|+|++|.++|++. ..|+|..+..+++..+........|+....+..+...+..+
T Consensus 118 ~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 118 AGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAV 187 (417)
T ss_pred ccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8655 5667889999999999999999998 88888777766665554433111288777666655554333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=112.55 Aligned_cols=146 Identities=15% Similarity=0.098 Sum_probs=117.4
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-----cchh-HHHHHHHHHHHHHHHhhhh---hhHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKA-SILVGGTAFLAGSALGGAA---FNIYMLIF 74 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 74 (189)
.|.+.++.|+|.++++++..+... .+..+++|+++||+ |||| .+.++..+.+++.....+. .+.+.+++
T Consensus 22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~ 99 (402)
T PRK11902 22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAG 99 (402)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 456667789999999999776665 68999999999999 8876 6777788887777766665 35667777
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 75 GRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 75 ~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..++.++..+...+...+++.|+.|+++|+++.++...+..+|..+++.++..+... ..+||..|++.++..++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 100 LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR--VLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--ccCHHHHHHHHHHHHHHHHH
Confidence 777788888888888999999999999999999999999999999998887655432 13899999987776655433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-15 Score=121.67 Aligned_cols=129 Identities=12% Similarity=-0.073 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcC
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMA 98 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~ 98 (189)
.+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+..++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456677899999999999999999999999999999999988888887777888888889888888888999999999
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 99 PPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 99 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
|++.|++++++.+....+|.+++|.+++.+... +...+|++.+++.++.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACG 726 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999997655432 2344555555444443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=127.57 Aligned_cols=122 Identities=12% Similarity=-0.026 Sum_probs=104.9
Q ss_pred ccccCCc--hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHhhhh
Q 042942 9 NYCNFDS--QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG---AAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 9 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~ 83 (189)
.+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.++..++.. ..++++.++++|++.|++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 117 (1146)
T PRK08633 38 KAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQS 117 (1146)
T ss_pred HHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3444443 4468889999999999999999999999999999998877666554443 3467899999999999999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
+...+...+++.|++|+++|++++++.+.+..+|.++++.++..+..
T Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 118 AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=113.82 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhhhhhhhhhhhh
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF----NIYMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+..+...++..+..+++.++.|+++||+|||+++.++.++.+++..+..... +.+.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888899999999999999999999999999999999888876665532 245667789999999988888888
Q ss_pred HHHhhcCCccccchhHHHHH-HHHHHHHHHHHHhhhhcccccCC---cchHHHHHhhHHHHHHHHh
Q 042942 92 LYLSEMAPPKNRGAFNIGFQ-VSVGIGVLSDNLLNYGTEKINGG---WGWRISLAMAAAPASILTI 153 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~ 153 (189)
.++.|.+|+++|+++.++.+ ....+|..++|.+++.+....+. ++|+..|.+.+++.++..+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~ 396 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV 396 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 67889999999998876654332 4799988877666655544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=113.97 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=115.2
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-----cchhH-HHHHHHHHHHHHHHhhhh---hhHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-----GRKAS-ILVGGTAFLAGSALGGAA---FNIYMLIFG 75 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 75 (189)
|...++.|.|.++++.+ +.....+ +.++++|+++||+ ||||. ++.+.++.+++....++. ++++.+.+.
T Consensus 36 ~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~ 113 (491)
T PRK11010 36 QAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAAL 113 (491)
T ss_pred HHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 44556678888888886 3333333 6899999999999 99986 667777776776666554 467788889
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+++.+++.+...+...++..|++|+++|+++.++...+..+|.++++.++..+... ..|||..|++.+++.++..+
T Consensus 114 ~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l 189 (491)
T PRK11010 114 AVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999999999999999998887666541 24899999988776665544
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=127.06 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHH---HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVG---GTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPL 92 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~ 92 (189)
...++..+++.+.+++.++++|+++||+|||+++... .++..+........++++.++++|+++|++.+...+...+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 4567788899999999999999999999999986442 2222222222233478999999999999999999999999
Q ss_pred HHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 93 YLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 93 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
++.|++|+++|++++++.+.+..+|.+++|.+++++... .+|++.|+..++..++
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~ 186 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVL 186 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654 3899888544444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=111.00 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=131.5
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG---AAFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G 80 (189)
.|++++.++++..+++++...++.+|.+++++.+++.+|+|+|+.+++|+.++++++.+.. ...++..++++-++.|
T Consensus 36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila 115 (422)
T COG0738 36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA 115 (422)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 5888899999999999999999999999999999999999999999999999999998884 4578899999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc-----c-----------CCcchHHHHHhh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI-----N-----------GGWGWRISLAMA 144 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~-----------~~~~w~~~~~~~ 144 (189)
.|.+...+..+.++....|++...+.+.+.+.++.+|..++|.++..+... . ....|+.+|...
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~ 195 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL 195 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999888999999999999999999997654431 0 012477788877
Q ss_pred HHHHHHHHh
Q 042942 145 AAPASILTI 153 (189)
Q Consensus 145 ~~~~~~~~~ 153 (189)
+....++.+
T Consensus 196 ~~~lvll~v 204 (422)
T COG0738 196 AGLLVLLAV 204 (422)
T ss_pred HHHHHHHHH
Confidence 766666655
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=112.26 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=118.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNI--YMLIFGRVLLGVGIG 84 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~ 84 (189)
..++++.++++.+.+.+...++..++.++.|++.||+|||+.+.++..+..++.++..+.++. ..++...++.|++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 310 (377)
T TIGR00890 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG 310 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence 345678888888999999999999999999999999999999999988888887776665432 334456677888888
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
...+..+.++.|.+|+++|++..++.+....+|..++|.+.+.+.+. .+|++.|.+.+++.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTS 374 (377)
T ss_pred cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHh
Confidence 77777888999999999999999999999999999999997766533 48999998888776654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=111.02 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=106.5
Q ss_pred cccccccCCchhHHHHHHHHH-HHHHHHHhhHHHhhhhhcchhHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLY-IAGLIASLFASSVTRAFGRKASIL-VGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
.+.+++|.|+++.+++.+... .++.++.+++++ +||+||||.++ .+.++.+++..+.+++++++.+++.+.+.+...
T Consensus 41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 119 (393)
T PRK15011 41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFG 119 (393)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356789999999999977655 566666666666 99999998754 556666677777778888888766665555555
Q ss_pred hhhhhhhhHHHhhcCCccccc--hhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRG--AFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+...+....+..|+.+++.|. ...+..+...++|..++|.++..+... .|||..|+..++..++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~ 187 (393)
T PRK15011 120 STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCG 187 (393)
T ss_pred HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHH
Confidence 566777778888887766553 345778888999999999998877643 489999988876655443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-14 Score=109.09 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=114.0
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+++++|+++.+.+++.+...++.+++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+..
T Consensus 243 l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~ 322 (393)
T PRK15011 243 IINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL 322 (393)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34668899989998888877888889999999999999999888776665555544445567777778888888887777
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+....+..|.+|+ +|+++.++++....+|..+++.+++.+... .+|+..+.+.+++.++.++
T Consensus 323 ~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 323 GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Confidence 77777888999985 589999998888999999999998776643 4899888877666655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=115.78 Aligned_cols=145 Identities=9% Similarity=-0.052 Sum_probs=114.0
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHHHH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASILV--GGTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
+.++.|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++....++++.+++.+++.|++
T Consensus 267 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~ 346 (455)
T TIGR00892 267 YAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLS 346 (455)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999973 33433333 3333344444555667888888899999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+...+....++.|.+|++++++..++++....+|..++|.+++.+....+ +|+..|++.+++.++..+
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 347 FGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 999888888999999999999999999999999999999999876664332 588888877766555444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=107.69 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=126.6
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchh-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKA-SILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
.+|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+...+..++.|++.+...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 205 VLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccch
Confidence 34889999999999999999999999999999999999 99999999999998888888888888999999999999999
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
....++.|..|+++|++..++.+....+|..+++.+.+.+.+ ..+|+..+.+.+++.++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i 346 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAAL 346 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876654 34888888888877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=109.33 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=107.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASI----LVGGTAFLAGSALGGAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 80 (189)
|.+.+++|+|.++++++.+++.+...++++++++++||+||++.. ..+..+..+ .....+++++.+++.|++++
T Consensus 28 ~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~ 105 (382)
T TIGR00902 28 PAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFA 105 (382)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999985433 222222222 23335678999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAP 147 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 147 (189)
.+.+...+...++..|+ .++|++..+......++|..++|.+++.+... .|||..|.+..+.
T Consensus 106 ~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~ 167 (382)
T TIGR00902 106 LFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAG 167 (382)
T ss_pred HHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHH
Confidence 88888888877777664 47789999999999999999999987766643 4899988876544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=108.56 Aligned_cols=142 Identities=12% Similarity=0.031 Sum_probs=115.1
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.....++.++....++.+.+.+..++.|++.+
T Consensus 244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 323 (406)
T PRK11551 244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV 323 (406)
T ss_pred HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 44556678999999999999999999999999999999999999888777766666666666677777777788888887
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
...+....+..|.+|+++|++..++.+....+|..++|.+.+.+.... .+|...+.......
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~ 385 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVI 385 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHH
Confidence 788888899999999999999999999999999999999987665432 24555555444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=109.38 Aligned_cols=138 Identities=11% Similarity=0.020 Sum_probs=107.1
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcch----hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRK----ASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 80 (189)
|.+.+++|.|.+++++..+++.++..+++++.|.++||+||| +.+.++..+. ........++++.+++.|++.|
T Consensus 28 ~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g 105 (382)
T PRK11128 28 SVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFN 105 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999999984 3333222222 1222333578899999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
++.+...+...++..++ .++|++..+......++|..++|.++..+... ++||..|+..++...
T Consensus 106 ~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~ 169 (382)
T PRK11128 106 LFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVA 169 (382)
T ss_pred HHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHH
Confidence 98888888777777776 45678888888888899999999998877643 489999887665443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=109.40 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=117.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+.+..+.+++.++..++..++.+++|++.||+|||+.+.++..+.+++.++.++.++.+.+...+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999999999999999999999999999999998888888888888888899999998888877778
Q ss_pred HHHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 92 LYLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.++.|.+|++.|++..+. ++....+|..+++.+.+.+... .||+..|...+++.++..+
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~ 397 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTL 397 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHH
Confidence 899999999999887665 6777889999999987766543 4799988887766654443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=110.24 Aligned_cols=147 Identities=14% Similarity=-0.021 Sum_probs=105.9
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSAL--GGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
+++++|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+ ....++.....+.+++.|+...
T Consensus 285 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 364 (467)
T PRK09556 285 AFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVF 364 (467)
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999998877654444433322 2233455566677788886543
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHH-HHHHHHHhhhhccc-cc--------CCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGI-GVLSDNLLNYGTEK-IN--------GGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~--------~~~~w~~~~~~~~~~~~~~~~ 153 (189)
........+..|.+|++.|+++.++.+....+ |..++|.+.+.+.. .. ...+|+..|.+..+..++..+
T Consensus 365 ~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~ 443 (467)
T PRK09556 365 GPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC 443 (467)
T ss_pred hHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence 43333346677999999999999999888886 76788777665554 00 034799988877666555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=107.51 Aligned_cols=139 Identities=11% Similarity=0.014 Sum_probs=115.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+..+.+++.++..+.++.+...++.++.|++.+...+
T Consensus 252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 331 (417)
T PRK10489 252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSL 331 (417)
T ss_pred hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 33889999999999999999999999999999998888888888888888877777777877777888889998887777
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
....++.|..|++.|++..+++.....+|..+++.+.+.+.... +++..+...++...+
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---g~~~~~~~~~~~~~~ 390 (417)
T PRK10489 332 LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---TPVASASASGFGLLI 390 (417)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---chhhHHHHHHHHHHH
Confidence 77789999999999999999999999999999999987776443 566666655544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=105.85 Aligned_cols=134 Identities=19% Similarity=0.137 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhh
Q 042942 17 LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSE 96 (189)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e 96 (189)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++..+..+.++.+.+++..++.|++.+..++.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677888889999999999999999999999988888888777777788788888999999999888877788889
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 97 MAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 97 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..|+++|+++.++++....+|..+++.+.+.+... .+|+..+.+.+++.++..+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLA 383 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887776655533 3799888877766655544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-13 Score=103.58 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=114.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
.+++|.++.+.+++.........++.++.|++.||+|||+.+.++..+..+......+.++.+.+.+.+++.|++.+...
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 306 (375)
T TIGR00899 227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILA 306 (375)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678898889988887777778889999999999999999988877766665555566777777788889999888888
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+....+..|..|++ |+++.++++....+|..++|.+.+.+.+. .+|+..+.+.+++.++..+
T Consensus 307 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 307 GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHH
Confidence 88888899998864 56999999999999999999998766543 3788888887776655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=106.79 Aligned_cols=141 Identities=12% Similarity=0.000 Sum_probs=106.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh---hh-----hhHHHHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG---AA-----FNIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~l 78 (189)
+.+++|.++.+.+++.++..+++.+++++.|+++||+|||+.++.+....++...... +. .....+++.+++
T Consensus 29 ~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (396)
T TIGR00882 29 LHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLY 108 (396)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999887766655443221 11 123345567888
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|++.+...+....+..|..+ +++...+......++|..++|.+++.+.. .+|+..|++.+++.++..+
T Consensus 109 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~ 177 (396)
T TIGR00882 109 LGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILML 177 (396)
T ss_pred HHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHH
Confidence 888888888877777777543 33456667777778999999999876653 3899999887776665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=109.24 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=104.7
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh--h-HH-HHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF--N-IY-MLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~l~G 80 (189)
|.+.++.|.+.....+......+...++.++.++++||+|||+.++.+..+.+++.++.+... + .. ....+.++.+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 445566788777677777777888899999999999999999999999999888877765431 1 11 2222334444
Q ss_pred hhhhhh-hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc---cccCCcchHHHHHhhHHHHHHHHh
Q 042942 81 VGIGFA-NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE---KINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 81 ~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+...+. ...++.+|++.|++.++.+++..+
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 451 (479)
T ss_pred HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence 444332 3566789999999999999999999999888888866643332 122345777777766655444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=105.36 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhc
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEM 97 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~ 97 (189)
.+...+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45556677788889999999999999999999999988888887777777777778888999999988888888888999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 98 APPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+|+++|++..++++....+|..++|.+.+.+.+. .+|+..|.+.+.+.++..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGII 383 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997766543 3799988888776665544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=107.72 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=112.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchh-HHHHHHHHHHHHHHHhhhhhh------HHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKA-SILVGGTAFLAGSALGGAAFN------IYMLI 73 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~~~ 73 (189)
+.+.+++|+++.+++++.++..+..++..|+.|+++|| +|||| .++++....+++.++..+.++ ...++
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 34567889999999999999999999999999999997 68755 566777777777766655432 34556
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcC-CccccchhHHHHHHHHHHHHHHHHHhhhhccc-c---cCCcchHHHHHhhHHHH
Q 042942 74 FGRVLLGVGIGFANQSVPLYLSEMA-PPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK-I---NGGWGWRISLAMAAAPA 148 (189)
Q Consensus 74 ~~~~l~G~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-~---~~~~~w~~~~~~~~~~~ 148 (189)
+.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+...+.. . .+..+||+.+.+.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 6778888888887777778888987 56889999999888888887766555333221 1 12458999988887776
Q ss_pred HHHHh
Q 042942 149 SILTI 153 (189)
Q Consensus 149 ~~~~~ 153 (189)
.+..+
T Consensus 184 ~~~~~ 188 (437)
T TIGR00792 184 VVSLI 188 (437)
T ss_pred HHHHH
Confidence 65544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=108.62 Aligned_cols=134 Identities=9% Similarity=-0.097 Sum_probs=102.9
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--FNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~ 86 (189)
+++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.... .+.+......++.+......
T Consensus 304 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (496)
T PRK03893 304 TDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGI 383 (496)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999999999888877666655443322 33334444445444433344
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhH
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAA 145 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 145 (189)
.+..+.++.|.+|+++|++.+++.+....+|..++|.+++.+... .+|+..+...+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~ 439 (496)
T PRK03893 384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLS 439 (496)
T ss_pred chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHH
Confidence 566778899999999999999999999999999999998776643 47776664443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=101.62 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=120.2
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
...++.|.++.+++.+.++..++.++..++.+++.||+|+|+.+.++.++..+.....++.++.+.++..++++|+..+.
T Consensus 230 ~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~ 309 (382)
T TIGR00902 230 IYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAV 309 (382)
T ss_pred HHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHH-HHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQ-VSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
..+....++.+. |+++|++.+++++ ...++|..+++.+++.+.+.. ++ ..|+..++++++
T Consensus 310 ~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~ 370 (382)
T TIGR00902 310 CHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAA 370 (382)
T ss_pred HHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHH
Confidence 999999999998 9999999999976 567899999999988877543 55 345444444443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=101.10 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhc
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEM 97 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~ 97 (189)
.+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+....++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 34555666778888899999999999999999999888887777777777788888899999999999988888889999
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 98 APPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 98 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|+++|++..++++....+|..++|.+++.+... .+|+..|++.+++.++..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~ 392 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAV 392 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876643 4799999988777766554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=102.53 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=107.3
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHH--HHhhh--hhhHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS--ALGGA--AFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~G~~~ 83 (189)
++++|.++.+.+.......++..++.++.|+++||+|||+.+..+..+..+.. ....+ .++.+.+....++.|++.
T Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (394)
T TIGR00883 247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIG 326 (394)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 35678888899999999999999999999999999999998776555444333 12222 245566667778888888
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+...+....++.|.+|+++|+++.++ ++....+|..++|.+++.+.+..+ .|+..++..++..+
T Consensus 327 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 327 GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 88888899999999999999999997 556677888899999877665432 27777666665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=103.47 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=94.4
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh---hh-----hHHHHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA---AF-----NIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~l 78 (189)
+.+++|+++.+.+++.+++.+++.++++++|+++||+|||++++++..+.++....... .+ .....+.+++.
T Consensus 37 l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (420)
T PRK09528 37 LHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIY 116 (420)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999998876665544332211 11 11112223333
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|.+.....+....+..+. .+++++..+.......+|..++|.+++.+.. .+|++.|++.++..++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 117 LGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLV 185 (420)
T ss_pred hhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHH
Confidence 3433333333333333222 3456777888888889999999999876653 2788888887766554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=100.21 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=111.5
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGS-ALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
.+.++.|.+..+.+++.+...++..++.++.++++||+|||+.. .+..+..++. .+....++.+.+.+..++.|++.+
T Consensus 231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~ 309 (390)
T PRK03545 231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIM 309 (390)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 34556789999999999999999999999999999999987654 4444444443 333445667777778888899887
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+....++.|..| ++|+++.+++.....+|..++|.+++.+.+. .+++..+...+.+.++..+
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALV 374 (390)
T ss_pred cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHH
Confidence 776777788888876 6889999999999999999999998877643 4899888888777766554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=109.28 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=126.7
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIF-GRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~ 83 (189)
+.++++++-+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.++..++.++..++++.+.+++ .-++.|+|.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~ 149 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL 149 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 4567888999999999999999999999999999999999999999999999999999999999987766 567889999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+..+.....++..+|+ ++|+.++|+...+.++|.++-|.+...+.. ..|||+.+++.+.+.+.+++
T Consensus 150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~ 215 (509)
T KOG2504|consen 150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLV 215 (509)
T ss_pred hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHH
Confidence 9999988888887775 779999999999999998888777655443 34899999988887766665
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=103.05 Aligned_cols=134 Identities=12% Similarity=-0.014 Sum_probs=105.2
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSA-LGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
.+++|++..+.+++.+...++..++.++.+++.||+|||+.+..+..+..+... .....++.+.+.+..++.++..+..
T Consensus 266 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (405)
T TIGR00891 266 KADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGI 345 (405)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccc
Confidence 356789999999999999999999999999999999999998888766533332 2333345556666667777776677
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHh
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAM 143 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~ 143 (189)
.+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+....+ .|+..+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g--~~~~~~~~ 400 (405)
T TIGR00891 346 WGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD--EYGTALAS 400 (405)
T ss_pred hhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHh
Confidence 77788899999999999999999999999999999999877765432 26555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=104.26 Aligned_cols=146 Identities=11% Similarity=-0.022 Sum_probs=105.7
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-----hh------hHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-----AF------NIYMLI 73 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~ 73 (189)
|.+.+++|.+..+.++......++..++.++.++++||+|||+.+.++..+.+++.++..+ .+ +...+.
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV 387 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence 4445677888888888888999999999999999999999999999988877777666552 11 222222
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 74 FGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 74 ~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...++.+.......+....++.|.+|+++|+++.++.+....+|..++|.+...+... .+|++.|++.++++++..+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHHH
Confidence 2222222222223355567789999999999999999999999999999886655432 3688777766666554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=100.07 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=112.1
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|...++.|.++++.++..+...++..+++++.|++.||+|+|+.+..+..+..++..... . ........++.|++..
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~ 300 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF 300 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence 444456788888999999999999999999999999999999999888877777665442 2 2233446677787777
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+....++.|..|+++++...+..+...++|..++|.+++.+.+. .+|++.|.+.+.+.++..+
T Consensus 301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHH
Confidence 77888888899999988888888888888999999999998876543 3788888877666655544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-12 Score=100.94 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=110.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh----hhcchhHHHHH-HHHHHHHHHHhhhhhhHH-----------
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRKASILVG-GTAFLAGSALGGAAFNIY----------- 70 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~~~~~-~~~~~~~~~~~~~~~~~~----------- 70 (189)
+.+++|.++...+++..+..+...+.+++.|+++| |+||||.++++ .....++..+.+++++..
T Consensus 30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT 109 (477)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence 45678999999999999999999999999999999 59999998875 555556656666654432
Q ss_pred ------HHHHHHHHHhhhhhhhhhhhhHHHhhcCCcccc--chhHHHHHHHHHHHHHHHHHhhhhcc--cc----cC---
Q 042942 71 ------MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNR--GAFNIGFQVSVGIGVLSDNLLNYGTE--KI----NG--- 133 (189)
Q Consensus 71 ------~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~----~~--- 133 (189)
.++++..+..++....++...++++|..|+++| +.+.++.+...++|..+++.+++... .. ..
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 223333344557777788888999999998876 57888899999999999999887531 10 00
Q ss_pred ---CcchHHHHHhhHHHHHHHHh
Q 042942 134 ---GWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 134 ---~~~w~~~~~~~~~~~~~~~~ 153 (189)
-.+.|..|++.++..++..+
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l 212 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTY 212 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 02678888887776666555
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-12 Score=101.81 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=114.8
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-----FNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~ 84 (189)
+..-|+...+++.....+...+.++++|.++||+.|||+++.+.++.++.....++. .+.+.+++..++.|++.+
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a 118 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSA 118 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 344567788888899999999999999999999999999999988776655444332 367888899999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
...|...+++.|..|+++...++++.+...+++..+||.+++.+.... |-.+.|.+.++..++
T Consensus 119 ~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~ 181 (524)
T PF05977_consen 119 FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLI 181 (524)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988766543 566677766554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=98.74 Aligned_cols=145 Identities=12% Similarity=0.041 Sum_probs=102.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh---h-hhHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA---A-FNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~G~~~ 83 (189)
++++|++.+....+..+..+...++.++.|+++||+|||+.+..+.++.+++.+.... . ++...++...++.+++.
T Consensus 278 ~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (438)
T PRK09952 278 TQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAH 357 (438)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3556777766555566666777888899999999999999998887766554433322 1 23344445566677888
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+...+...+++.|.+|++.|+++.++ ++.+..+|..++|.+...+....+ .+|+..+.+.++..++..+
T Consensus 358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v 427 (438)
T PRK09952 358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAM 427 (438)
T ss_pred HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH
Confidence 87788888999999999999999888 444555888889988776654321 2577777766655554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-12 Score=94.58 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=131.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
+++.+++|++.+.++++.++..+...+.+++..+++.|+|.++.+..++++.+++..+-... +.+.++.+..+.|.+.+
T Consensus 36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIa 114 (395)
T COG2807 36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIA 114 (395)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHH
Confidence 55678899999999999999999999999999999999999999999999999999999876 77888899999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+..|.++-+.||+| -+..+++|.....+|..+++.+...+.+.. .+||....+.++++++..+
T Consensus 115 v~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 115 VINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALL 180 (395)
T ss_pred HHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999855 589999999999999999988877766544 3899999999999888877
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-12 Score=97.49 Aligned_cols=140 Identities=16% Similarity=0.063 Sum_probs=99.3
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhH--HH------HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKAS--IL------VGGTAFLAGSALGGAAFNIYMLIFGRVLL 79 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (189)
.+++|.++.+.+++.+...++..++.++.|+++||+|||+. .. .+.++..+........++.........+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (399)
T TIGR00893 243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG 322 (399)
T ss_pred HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999861 11 11111111111222223344444444444
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASIL 151 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~ 151 (189)
+.+.+ ..+....++.|.+|+++|++..++.+....+|..++|.+.+.+.... + |+..+.+.+++.++.
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---g~~~~~~~~~~~~~~~~ 391 (399)
T TIGR00893 323 FFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---GSFAGALMVVAALALIG 391 (399)
T ss_pred Hhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---CchhHHHHHHHHHHHHH
Confidence 44444 67888899999999999999999999999999999999977666433 5 888777766665543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=98.41 Aligned_cols=140 Identities=12% Similarity=0.023 Sum_probs=111.2
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++++|+++.+.+.+.+.+.++..++.+..++++||++||+.+.....+..+..++....++...+.+..++.|++.+..+
T Consensus 233 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 312 (394)
T PRK03699 233 QKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIY 312 (394)
T ss_pred HHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999888877777766666556666666667788888888777
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+....+..|..| +++++..+....+..+|..++|.+.+.+.+. .+++..++..+++.++.
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~ 372 (394)
T PRK03699 313 TTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVV 372 (394)
T ss_pred HHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHH
Confidence 877777788776 4467778888888889999999998766643 37887777666555544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=98.41 Aligned_cols=142 Identities=16% Similarity=0.154 Sum_probs=118.9
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcch--hHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRK--ASILVGGTAFLAGSALGGA--------AFNIYMLIFGRV 77 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 77 (189)
.+++|++..+...+..+..+..++|++++|++.||+|.| ++++++..++.+..+...+ .++.+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 357899999999999999999999999999999999999 8888888777555555444 467778888899
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 78 LLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 78 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
+.|+..|..++..-++.+|+.|+++.+...|++.+.....+.++|++-+.+...++ +-|+.+....++.++.
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~g 460 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIG 460 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877776654 4555555444444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=96.65 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=105.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHH-HHHHHHHHHHHHhhh-----hhhHHHHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASIL-VGGTAFLAGSALGGA-----AFNIYMLIFGRVL 78 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l 78 (189)
|.+.+++|++..+.+.+.+...++..++.+..|+++||+|||+.+. .+.....++...... .++.+..++..++
T Consensus 246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 325 (402)
T TIGR00897 246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA 325 (402)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence 4455678999988899888999999999999999999999988764 333333333222221 2355666677888
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
.|++.+...+ ....+.|..| ++|+++.++.+....+|..++|.+.+.+... .||+..+++.+++.++..
T Consensus 326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHH
Confidence 8888776554 4456677655 5899999999999999999999998766643 378888887776665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=97.35 Aligned_cols=125 Identities=14% Similarity=0.045 Sum_probs=109.2
Q ss_pred ccccc-cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhh
Q 042942 5 TNISN-YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN-IYMLIFGRVLLGVG 82 (189)
Q Consensus 5 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~ 82 (189)
|.+.+ .+|.++.+.+.+.+...++..++.++.+++.||++||+.+..+..+.+++.+...+.++ .+.+++..++.|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 314 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG 314 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 34434 37889999999999999999999999999999999999999888877777777776664 77788889999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+...+....++.|..|+++|++..++.+....+|..++|.+++.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999976654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=95.84 Aligned_cols=118 Identities=8% Similarity=-0.111 Sum_probs=89.3
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
+.+++++|++.++++++.+++.++..++++++|.++||+|| |+++.++.++..+...+..+.++++.+++.|++.|++.
T Consensus 27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (418)
T TIGR00889 27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY 106 (418)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34557789999999999999999999999999999999965 77888888888888888888888999999999999877
Q ss_pred hhhhhhhhHHH----h----hcCCccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 84 GFANQSVPLYL----S----EMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 84 ~~~~~~~~~~~----~----e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
+...+...++. . |......|.+..| .+|..++|.+++.+
T Consensus 107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l 153 (418)
T TIGR00889 107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL 153 (418)
T ss_pred ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence 66665544432 1 2222233444444 35677777776555
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=97.76 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=99.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+............+.....+.+...+..++.|++.+
T Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 353 (398)
T TIGR00895 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN 353 (398)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 44556778898899999999999999999999999999999855444433333333333334566667778888999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
...+....++.|.+|+++|+++.++.+....+|..++|.+.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999998654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=96.54 Aligned_cols=143 Identities=15% Similarity=0.027 Sum_probs=106.2
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~ 84 (189)
.+.+++|.+..+.+...+.+.++..++.++.+++.||+|||+.+..+..+..++..+....+ +.... ..++.|++.+
T Consensus 230 ~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g 307 (393)
T PRK09705 230 AFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLG 307 (393)
T ss_pred HHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhcc
Confidence 33445799999999999999999999999999999999999999888877777665544322 22222 2345677777
Q ss_pred hhhhhhhHHHhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 85 FANQSVPLYLSEMAP-PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
...+.......+..+ +++|++..++.+....++..++|.+.+.+....+ +|...|.+.++.+++..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~ 374 (393)
T PRK09705 308 GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLM 374 (393)
T ss_pred chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHH
Confidence 777777666677775 6789999999999999999999999877665443 46666666554444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=100.00 Aligned_cols=128 Identities=13% Similarity=-0.064 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh---HHHHHHHH-HHHhhhhhhhhhhhhHHHhhcCC
Q 042942 24 SLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN---IYMLIFGR-VLLGVGIGFANQSVPLYLSEMAP 99 (189)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~l~G~~~~~~~~~~~~~~~e~~~ 99 (189)
+..++.+++.++.++++||+|||+.++++..+.+++.++..+..+ ........ +...+......+....+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 344566778899999999999999998888777777655554321 11111111 11112122234456677899999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhcccccC-------CcchHHHHHhhHHHHHHH
Q 042942 100 PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKING-------GWGWRISLAMAAAPASIL 151 (189)
Q Consensus 100 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~w~~~~~~~~~~~~~~ 151 (189)
++.|+++.++.+....+|.+++|.+...+....+ +.++...+.+.++..++.
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 481 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG 481 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999988655443210 124444555555444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=96.98 Aligned_cols=127 Identities=12% Similarity=0.015 Sum_probs=92.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--h
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGV--G 82 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~ 82 (189)
|...++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.......-++.|+ .
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (426)
T PRK12307 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT 334 (426)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 33345568888888988899999999999999999999999999988877766655444332221111122223333 2
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI 131 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (189)
.....+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+...
T Consensus 335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 2233455667889999999999999999999999999999998776643
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-12 Score=101.29 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=122.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+++|.++...|++.++..+|.++|.+..+.+.+|+++++.+..+.++.+++.+..++.++.+..++..++.|++......
T Consensus 247 ~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~ 326 (524)
T PF05977_consen 247 DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANS 326 (524)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
...+.+.+..|++.||+.++++++....+..+|..+.+.+... .|.+..+.+.++..++.
T Consensus 327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998888888887776644 36777776665544333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=95.12 Aligned_cols=139 Identities=12% Similarity=-0.015 Sum_probs=86.7
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh--h--hhhHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG--A--AFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~G~~~ 83 (189)
.+++|.+..+.+...++..++..+++++.|+++||+|||+.+.++..+.++...... . .++....+..-.+..+..
T Consensus 271 ~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (432)
T PRK10406 271 VNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIV 350 (432)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 456788888888888888888889999999999999999988776655433332111 1 122222222222222333
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHH-HHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVG-IGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+...+....+.+|++|++.|+++.++.+...+ +.....|.+...+... + .|...+++.++..+
T Consensus 351 ~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g--~~~~~~~~~~~~~~ 414 (432)
T PRK10406 351 SFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-G--METAFFWYVTLMAV 414 (432)
T ss_pred HHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-C--CCcHHHHHHHHHHH
Confidence 33344566788999999999999999665544 3344466666554322 1 24444444433333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-12 Score=98.72 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=121.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhhhhhh
Q 042942 11 CNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAF--NIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~ 87 (189)
+|+|++++.-+.+.+..-..+..+++||++||+ |+|+++.+|.++..++.++.+..+ +...++++..+.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 669999999999999988899999999999995 999999999999999999998874 67788888888889999999
Q ss_pred hhhhHHHhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 88 QSVPLYLSEMAPPKN--RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+....++.|.+|+++ |-...++++++.++|++++|++...+... .+|...|...++-....++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~ 200 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLV 200 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHH
Confidence 999999999998544 56677889999999999999998777654 4899999888766655544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-11 Score=93.29 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=113.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
.++.|.++.+.+.+.++..++..+..++.+++.||+|+|+.+..+..+..++.+..+..++.+.+++..++.|++.+...
T Consensus 232 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 311 (382)
T PRK11128 232 WQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCH 311 (382)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35678898889999998889999999999999999999999999999988888877888888988899999999999888
Q ss_pred hhhhHHHhhcCCccccchhHHHHH-HHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQ-VSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+....++.+. +++++++..+..+ ....+|..++|.+++.+.+.. ++ ..++..+++.++..
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 312 LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHH
Confidence 8888888887 5556788888765 556778889999988776543 55 34555555554433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=99.66 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=95.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchh-------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKA-------SILVGGTAFLAGSALGGAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 80 (189)
.+++|++..+++.+.++..++..++.++.|+++||+|||+ ...+...+..+..++....++.+...+..++.+
T Consensus 280 ~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~ 359 (476)
T PLN00028 280 YDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFS 359 (476)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999998652 222333333333344444555555555555666
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
++.+...+....+..+.. +++|+...++.+.+..+|..+++.+-. ..+..+|+..|++.+++.++..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~ 427 (476)
T PLN00028 360 IFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTL 427 (476)
T ss_pred HHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHH
Confidence 665555555556666765 478999999988877788877776532 11223688888777655554444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=92.44 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=95.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 042942 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-FNIYMLIFGRVLLGVGIGFANQSVPL 92 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~ 92 (189)
++...+++.++..++.+++.+++++++||+|+|+.+.++..+.+++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788889999999999999999999999999988888877666554 35566677778889999888888888
Q ss_pred HHhhcCC-------ccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 93 YLSEMAP-------PKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 93 ~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
+++|..+ ++.+|...++.+....+|..+++.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888865 556789999999999999999988866543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=95.07 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=93.8
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHH-HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASI-LVGGTAFLAGSALGGA--AFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~ 82 (189)
+++.|++..+.++....+.++..++.++.|+++||+ +||+.. .....+..++.+...+ ..+.....+..++.|..
T Consensus 281 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 360 (452)
T PRK11273 281 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFL 360 (452)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 345788888888888888899999999999999999 555432 2222333333322222 22334444444455554
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHH-HHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVL-SDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..........+..|.+|++.|+++.++.+....+|.. .+|.+.+.+... .+|+..|.+.++.+++.++
T Consensus 361 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 361 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH---hcchHHHHHHHHHHHHHHH
Confidence 3332333345678999999999999999888777754 477776655533 4788888877766655544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-11 Score=93.51 Aligned_cols=123 Identities=12% Similarity=-0.006 Sum_probs=86.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHH-hh---hhhhHHHHHHHHHHHhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSAL-GG---AAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~l~G~~~~ 84 (189)
+.+|++..+.++......++..++.++.|+++||+|||+.+..+..+..+...+ .. ..++........++.+++.+
T Consensus 267 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (434)
T PRK15075 267 TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG 346 (434)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 447888888888888888999999999999999999999988765544332221 11 12233334344555666666
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHH-HHHHHHHHHHHhhhhcccc
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQV-SVGIGVLSDNLLNYGTEKI 131 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~ 131 (189)
...+....+..|.+|+++|+++.++.+. +..++..++|.+.+.+.+.
T Consensus 347 ~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~ 394 (434)
T PRK15075 347 SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV 394 (434)
T ss_pred HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 6666667889999999999999998544 4444566677776655543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-11 Score=92.48 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=113.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+.+....+.+.++..+...++.+..+++.||+|||+.+.++..+.++...+....++.+.++..++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888899999999999999999999999998888887777778888888889999998877766667
Q ss_pred HHHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 92 LYLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+..+..|++.+++..+. ++....+|..+++.+++.+... .||+..|.+.+++.++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHH
Confidence 788888898888887766 6788899999999998777643 3788888887777665543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-11 Score=96.34 Aligned_cols=123 Identities=19% Similarity=0.039 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhhhhhhhhhhhhHHHhhcCCcc
Q 042942 24 SLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNI--YMLIFGRVLLGVGIGFANQSVPLYLSEMAPPK 101 (189)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~ 101 (189)
...+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+..++.+++.+..++....+..|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 4456667788899999999999999999998888888777665433 44445556667777777788889999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 102 NRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.|++++++.+....+|.+++|.+.. +.. .++...+.+.+...++.
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999876 332 24445555544444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-11 Score=95.46 Aligned_cols=120 Identities=12% Similarity=-0.022 Sum_probs=98.9
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~ 86 (189)
.+|.++.+.++......++..++.++.+++.||+|||+++..+..+..+...+..+. ++.+.+....++.|++.+..
T Consensus 291 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 370 (471)
T PRK10504 291 GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTR 370 (471)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 468888889988888888888888999999999999999999988887776655542 23334445567778888888
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+....+..+..|++.|+.+.++.++...+|..+++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll 413 (471)
T PRK10504 371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL 413 (471)
T ss_pred HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999988876543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=93.76 Aligned_cols=145 Identities=10% Similarity=0.047 Sum_probs=106.6
Q ss_pred cccccccCCchhHHHHHH-HHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHHHHHh
Q 042942 6 NISNYCNFDSQLLTTFTS-SLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GAA-FNIYMLIFGRVLLG 80 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~G 80 (189)
.+.++.|+++++.++... ...++.+++.+++|+++||+|+|+.+.++.++.++..... +.. ++...+....++..
T Consensus 248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~ 327 (491)
T PRK11010 248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFEN 327 (491)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 344568999999999874 5568999999999999999999998877666555544322 222 34444445566656
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
++.+...+...++..+..+++.+++..++.+....+|..+++.+.+.+.+. .||+..|.+.++++++..+
T Consensus 328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~ 397 (491)
T PRK11010 328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLL 397 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHH
Confidence 666666666778889999999999999999999999987666666555543 3798888877777766544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=103.75 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=114.7
Q ss_pred cccccCCch-hHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 8 SNYCNFDSQ-LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
.+.+|++.. ..+++.+...++.+++.++.++++||+++++.+.++.++.+++.++..+..+.+.+++..++.|++.+..
T Consensus 260 ~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 339 (1146)
T PRK08633 260 KEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLF 339 (1146)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 456788888 8999999999999999999999999999999999988888888888877778888888889999999988
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHH
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAP 147 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 147 (189)
.+...+++.+..|++.|++++++.++...+|..+++.++..+... ..++...+.+.+.+
T Consensus 340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALV 398 (1146)
T ss_pred hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 888889999999999999999999999999988887777655432 12455455444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=89.77 Aligned_cols=143 Identities=11% Similarity=-0.018 Sum_probs=104.2
Q ss_pred cccccccCCchhHHHHHHHHH-HHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHH
Q 042942 6 NISNYCNFDSQLLTTFTSSLY-IAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA------AFNIYMLIFGRVL 78 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l 78 (189)
...+|.|+++++.+++..... ....++.++.|++.||+|+|+.+..+..+.++....... .++.........+
T Consensus 233 ~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (390)
T TIGR02718 233 LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAF 312 (390)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHH
Confidence 344567999999999888775 466778899999999999999988877665333322211 1222333444455
Q ss_pred HhhhhhhhhhhhhHHHhhcCCc-cccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPP-KNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.+++.+...+.......+..++ +.+++..+..+....+|..++|.+++.+.+. .|++..|...+++.++.
T Consensus 313 ~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 313 GSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHH
Confidence 5666777777777777777766 8899999999999999999999998777643 37888888777665554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-11 Score=93.53 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=92.6
Q ss_pred cccccc--ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 042942 5 TNISNY--CNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKAS-ILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGV 81 (189)
Q Consensus 5 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 81 (189)
|.+.++ .+.++.+.+.......++..++.++.|+++||++||+. +.....+..++..+.....+....+.+-++.++
T Consensus 266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (412)
T TIGR02332 266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM 345 (412)
T ss_pred HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444 35677788888999999999999999999999997775 333443444333222222222222222222333
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
+.....+.......|.+|+++|+++.++.+....+|..++|.+.+.+....+ +|+..+++.++..
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~~ 410 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAALL 410 (412)
T ss_pred HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHHH
Confidence 3333333344555788999999999999999999999999998766554332 5887777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-10 Score=88.43 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=97.9
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-----FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~ 82 (189)
.+++|.++.+.++......++..++.++.++++||+++|+.+.++..+..++..+.... .+.+.++...++.|++
T Consensus 243 ~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g 322 (406)
T PRK15402 243 ISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFG 322 (406)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 45678898888888777788889999999999999999999999888777776665543 2455666778888998
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN 132 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 132 (189)
.+...+........ .++++|++..+.++....+|..+++.+...+....
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 323 IGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88777665554433 34588999999999999999999999987765443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.6e-11 Score=92.12 Aligned_cols=147 Identities=11% Similarity=-0.019 Sum_probs=107.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh-hhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR-AFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
|...++.+.++.+.+++.++..++...+..+.+.+.| |++.++.+..+..+.+++..+.++.++++.+.+..++.+++.
T Consensus 232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~ 311 (400)
T PRK11646 232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS 311 (400)
T ss_pred hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4544554456778888887777766666655566665 567677777888888888777777777777777777888888
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASIL 151 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~ 151 (189)
+...+....++.|..|+++|++..++.+....+|..++|.+++.+.+..+..+ ....++..++.+++.
T Consensus 312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT 380 (400)
T ss_pred HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999887765432222 234444444444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=91.20 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=95.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHH-HHH---HHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASI-LVG---GTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
+++|++..+.+...+.+.++..++.++.|+++||+ ++|+.. ... ..+..++..... ..+........+..|++
T Consensus 272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~ 350 (434)
T PRK11663 272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFF 350 (434)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999998 333332 221 111111111122 22333333334444543
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..........+..|.+|+++|++..++.+....+|..++|.+.+.+.+ +.+|+..|...++++++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~f~~~~~~~~~~~~ 418 (434)
T PRK11663 351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE---IWHWTGFFVVISIAAGISAL 418 (434)
T ss_pred HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH---hcccHHHHHHHHHHHHHHHH
Confidence 322233344567899999999999999999999999999998766553 34899888888777666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.7e-11 Score=93.52 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=104.7
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchhH-HHHHHHHHHHHHHHhhhhh------hHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKAS-ILVGGTAFLAGSALGGAAF------NIYMLIFG 75 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 75 (189)
+.+.+|+++..++.+..+..+..++..|+.|+++|| +||||. ++++....+++.++....+ ....+++.
T Consensus 36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~ 115 (444)
T PRK09669 36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVT 115 (444)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 456789999999999999999999999999999998 787555 5566666666665444332 23455556
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcC-CccccchhHHHHHHHHHHHHHHHHHhhhhcccc----cCCcchHHHHHhhHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMA-PPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI----NGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~ 150 (189)
.++.+.+......+..++.+|+. ++++|.+..+....+..+|..+++.+...+... ....+|+..+.+.++++.+
T Consensus 116 ~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v 195 (444)
T PRK09669 116 YILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVV 195 (444)
T ss_pred HHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence 66677777777777778999988 568899888888878788777766543322211 1235788888777766655
Q ss_pred HH
Q 042942 151 LT 152 (189)
Q Consensus 151 ~~ 152 (189)
..
T Consensus 196 ~~ 197 (444)
T PRK09669 196 LF 197 (444)
T ss_pred HH
Confidence 43
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.1e-11 Score=90.61 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=90.0
Q ss_pred cccccccCCchhHHHHHHHHH-HHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-----------hhHHHHH
Q 042942 6 NISNYCNFDSQLLTTFTSSLY-IAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-----------FNIYMLI 73 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 73 (189)
...+++|+++++.+.+..+.. ++..++.++++++.||+|||+.+.++.++.++...+..+. ++.+.+.
T Consensus 234 ~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (356)
T TIGR00901 234 LFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLF 313 (356)
T ss_pred HHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 333457899999988877655 6778999999999999999999998888877766655442 3456677
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHH
Q 042942 74 FGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVG 115 (189)
Q Consensus 74 ~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~ 115 (189)
.+.++.+++.+...+....++.|.+|+++||+..++.+...+
T Consensus 314 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 314 LTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 788889999999999999999999999999999998776553
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=88.19 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=118.5
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+++|++..+...+.....+..+++++++|++.||+|.|+++..+.++..+.++...+......+.++-++.|...|..+.
T Consensus 281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 47899999999999999999999999999999999999999999999988887777777777777888889999999999
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhH
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAA 145 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 145 (189)
.+-.+..+..|+++-++..|+++.....++.++|.+-..+...++ +-|..+....
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~ 415 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSII 415 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHH
Confidence 999999999999999999999999999999999999777766554 3454444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=92.15 Aligned_cols=122 Identities=10% Similarity=0.059 Sum_probs=103.4
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA----AFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~ 83 (189)
++.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ ..+.+.+....++.|++.
T Consensus 283 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~ 362 (485)
T TIGR00711 283 QQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGM 362 (485)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999998888888776652 134556666788899999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
+...+.......+..|+++|+++.++.+....+|..+++.+...+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 363 GCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred HHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777888899999999999999999999999988865544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=86.25 Aligned_cols=147 Identities=10% Similarity=-0.056 Sum_probs=101.2
Q ss_pred cccccccccCCchhHHHHH--HHHHHHHHHHHhhH-HHhhhhhcchhHHHHHHHHH-HHHHHHhh---hhhh-HHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFT--SSLYIAGLIASLFA-SSVTRAFGRKASILVGGTAF-LAGSALGG---AAFN-IYMLIFG 75 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~Grr~~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~ 75 (189)
.|.+.++.|.|+++++.+. +...+...+.+++. ++..||+||||..++...+. ........ ...+ ...++..
T Consensus 24 lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (390)
T TIGR02718 24 LPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGL 103 (390)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 4666788899999999974 56677777788777 55789999999976655332 21121111 1222 2333444
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.++.++..+...+....+..|..++++++...+....+..+|..+++.....+.. +.+||..|++.+++..+..+
T Consensus 104 ~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~---~~gw~~~f~~~a~l~~~~~~ 178 (390)
T TIGR02718 104 LACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG---KFGQRPAFLLVACVPLASLV 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHH
Confidence 4555666666677777788898888888888888888888888888876655443 24899999988876654433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=86.51 Aligned_cols=143 Identities=9% Similarity=0.004 Sum_probs=107.3
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAG-SALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
|.+.+++|+++++.+.......++..++.++.+++.||.+ |+.+..+..+..+. .++....++.+.+.+..++.|++.
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999999999999964 44444444443333 344445566777777888899999
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
+...+....++.+..| +++++..+.......+|..+++.+++.+.+. .|++..+...+++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHHH
Confidence 8888888888888887 4566777777778889999999998877643 477777777766554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=87.45 Aligned_cols=120 Identities=10% Similarity=0.040 Sum_probs=92.9
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--FNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~ 86 (189)
+.+|.++...++......++..++.++++++.||+|+|+.+.++..+.+++.+...+. .+.+.+++..++.|++.+..
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~ 336 (448)
T PRK09848 257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT 336 (448)
T ss_pred eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence 3456655544444444467788899999999999999999999998888877666554 35566667778889999999
Q ss_pred hhhhhHHHhhcCCcc-------ccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 87 NQSVPLYLSEMAPPK-------NRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
.+...++.+|..|.+ ++|...++.++...+|..+++.+...+
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988889998888754 358888999999999998888876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=87.99 Aligned_cols=127 Identities=13% Similarity=-0.012 Sum_probs=96.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
|.+.++.|.+..+.+.+.+...++.++++++.|++.||+ +||+.+..+..+.+++.++..+.++..... ..++.|++.
T Consensus 221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~ 299 (355)
T TIGR00896 221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ 299 (355)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence 444456789999999999999999999999999999999 566677777777777776666544333222 356789999
Q ss_pred hhhhhhhhHHHhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhhhccccc
Q 042942 84 GFANQSVPLYLSEMAP-PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN 132 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 132 (189)
+...+.....+.+..+ +++++...++.+....++..++|.+.+.+.+..
T Consensus 300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877766665554 566788888888888888889998877666544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.1e-11 Score=89.19 Aligned_cols=102 Identities=16% Similarity=0.017 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccc
Q 042942 25 LYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRG 104 (189)
Q Consensus 25 ~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~ 104 (189)
..+.-..|.++.+++.||+|||++|....++++++.++.....+-....+.-+..-++..+.+.+.++|..|.+|+..|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 45666789999999999999999999999999999988876544333333333333444555667888999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 042942 105 AFNIGFQVSVGIGVLSDNLLNY 126 (189)
Q Consensus 105 ~~~~~~~~~~~~g~~~~~~~~~ 126 (189)
++.|.-.....+|.++.|.++.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHH
Confidence 9999999999999999999983
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=91.32 Aligned_cols=144 Identities=13% Similarity=-0.015 Sum_probs=105.7
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc-----chhHHHHHHHHHH-HHHHHhhhhhhHHHH-HHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-----RKASILVGGTAFL-AGSALGGAAFNIYML-IFGR 76 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 76 (189)
.|.+.+++|+++++++.+.+...+...+-.+ +|+++||++ ||+.++++.++.. +.....+..++.... .+..
T Consensus 49 ~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 127 (468)
T TIGR00788 49 SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFI 127 (468)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3556678999999999999999999888555 999999997 7777777776663 443333433443333 3478
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCccccchhHH---HHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 77 VLLGVGIGFANQSVPLYLSEMAPPKNRGAFNI---GFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
++.+++.+...+..-++..|..+ +++....+ ....+..+|..+++.+++.+... .+|+..|++.+++.++..
T Consensus 128 ~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~~ 202 (468)
T TIGR00788 128 FLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQL 202 (468)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHHH
Confidence 88999999999999999999998 55544333 33334457899998888766543 489999988877766653
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=90.63 Aligned_cols=122 Identities=11% Similarity=-0.059 Sum_probs=103.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~ 84 (189)
++.+|.++.+++.......++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+......++.|++.+
T Consensus 287 q~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g 366 (495)
T PRK14995 287 QFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAA 366 (495)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHH
Confidence 44578999999999999999999999999999999999999998888887776655432 345556677888999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
...+.....+.+..|+++++.+.++++....+|..+++.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 367 SALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred HHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888899999999999999999999999999988865543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=83.75 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=92.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-----FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~ 82 (189)
.+++|.++.+.+++.+...++..++.++.+++.||+|||+.+..+..+..++..+..+. .+...+....++.|++
T Consensus 234 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 313 (385)
T TIGR00710 234 IDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIG 313 (385)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999988887777776655443 2334445567778888
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHH-HHHHHHHHhh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVG-IGVLSDNLLN 125 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~ 125 (189)
.+...+....+..|..| ++|+++.++.+.... .|.+.++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 314 NSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888886 678999998776654 5667777665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=86.31 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=87.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHhhhhhhhhh
Q 042942 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-----AFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+++..+.+.++..++.+++.+++++++||+|+|+.+.++..+.+++.+.... ..+.+.+++..++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888999999999999999999999888776666544432 24456666777888999999998
Q ss_pred hhhHHHhhcCC-------ccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 89 SVPLYLSEMAP-------PKNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 89 ~~~~~~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
...++++|..+ .|..|...+...++.-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999965 23335577788888888888887775543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=81.21 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=78.2
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+++|+++.+++.+...-+....+..++.|.++||+|||+..++-+++.+++++.. ..++++.++++|++.|++....+.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999988654 458899999999999999999999
Q ss_pred hhhHHHh
Q 042942 89 SVPLYLS 95 (189)
Q Consensus 89 ~~~~~~~ 95 (189)
...+++.
T Consensus 141 ~FEsW~V 147 (354)
T PF05631_consen 141 AFESWMV 147 (354)
T ss_pred HHHHHHH
Confidence 8887764
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.2e-10 Score=85.98 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=102.0
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-AFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~ 83 (189)
|.+.+.+|.++++.+++.+...++..++.++.+++.||+|+|+.+.++..+.+++.++... .++.+...+..++.+++.
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 303 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL 303 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344567899999999999999999999999999999999999999988888777755543 445555556666666665
Q ss_pred hhhhhhhh-HHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVP-LYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~-~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
....+... ....+..+++.++.. ..+....+|..++|.+++.+.... .+|+..+...+..+.+...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 304 FALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHH
Confidence 44444334 344454455555443 346677899999999987665432 3687777776655554443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=79.59 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=97.2
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-------FNIYMLIFGR 76 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 76 (189)
.|.+++.+|+|.++...+.+.-.+|..+| ++.|.+.|++|++.++.+|.+...++..+.... .+++.+.+..
T Consensus 25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~ 103 (250)
T PF06813_consen 25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL 103 (250)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence 47788899999999999999999998875 888999999999999999999999998777653 3567777777
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 77 VLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
++.|.+.+...........+.|| ++||++.++.-...++++.+-..+
T Consensus 104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH
Confidence 77777766666666666778887 579999999888888876555444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-10 Score=85.83 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=99.9
Q ss_pred ccccccCC-chhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhh
Q 042942 7 ISNYCNFD-SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~ 82 (189)
+.+++|.+ ..+.+.+.++..++..++.++.+++.||+++|+...+......+......+. ++....+...++.|++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 312 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFG 312 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 36778888 7888999999999999999999999999999888888777777766665543 3456666778889999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDN 122 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~ 122 (189)
.+...+....++.|..|+++|+++.++.+...++|..++|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.8e-10 Score=86.95 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=94.5
Q ss_pred cccccccCCchhHHHHHHHH-HHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHHH---
Q 042942 6 NISNYCNFDSQLLTTFTSSL-YIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GAA-FNIYMLIFGRV--- 77 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~--- 77 (189)
.+.+++|+++++.+++.... .++..++.++++++.||+|||+.+.++..+..+..+.. ++. ++.+.+.+..+
T Consensus 235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (402)
T PRK11902 235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIEN 314 (402)
T ss_pred HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 34566899999999987655 45689999999999999999998887776665554333 233 34455544443
Q ss_pred -HHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 78 -LLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 78 -l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..|++.+...+....++.+.+|.+++ +..+....+|...++.+++.+.. ..||+..|.+.++++.+..+
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~---~~G~~~~f~~~~~~~~~~~~ 384 (402)
T PRK11902 315 LCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE---AYGWPGFYLMTVVIALPGLA 384 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHH
Confidence 44555666666666777777775544 44444556666555555555543 34899999888877766544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=88.10 Aligned_cols=130 Identities=17% Similarity=0.072 Sum_probs=92.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHH-HHH-HHHHHHHHHhhh--hhhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASIL-VGG-TAFLAGSALGGA--AFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~ 82 (189)
.+++|.++.+.++..+...++..++.++.+++.||+.+ |+... ... ....++...... ..+........++.|+.
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 323 (379)
T TIGR00881 244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFL 323 (379)
T ss_pred HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999998643 33222 222 112222222222 23445555666677766
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRIS 140 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~ 140 (189)
.....+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+. .||+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~ 378 (379)
T TIGR00881 324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG---FGWAGA 378 (379)
T ss_pred HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh---hccccc
Confidence 5555566677889999999999999999999999999999997766643 367654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=81.17 Aligned_cols=133 Identities=27% Similarity=0.344 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN--IYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.++..+..+ ...+.+.|+..|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46789999999999999999999999999998888887765555555555554 7888899999999999999999999
Q ss_pred HhhcCCc-cccchhHHHHHH-HHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 94 LSEMAPP-KNRGAFNIGFQV-SVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 94 ~~e~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+.|+.|. ++|+...+.... ...+|..+++.++..+... ...+||..+........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 9999998 678888888777 5778888888776555443 44589987776666653
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=86.87 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=104.7
Q ss_pred ccccc-cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHHHHHHHHHHHHHHhh-hh---h-hHHHHHHHHH
Q 042942 5 TNISN-YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVGGTAFLAGSALGG-AA---F-NIYMLIFGRV 77 (189)
Q Consensus 5 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~-~~---~-~~~~~~~~~~ 77 (189)
|.+++ |.+-+.+..|++.+...++.++..++.|+...|.+. |+.++.+.++.+++.++.. +. + .-+.++++|+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~ 138 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARI 138 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 44443 456678889999999999999999999999999886 8999999999999998883 32 2 4678889999
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 78 LLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 78 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
+.|+|.+.. ...-.|+++....++|.++.+....+..+|..+||.+...+..
T Consensus 139 l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 139 LTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 999998765 4577999999999999999999888888888888888765544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.9e-10 Score=88.27 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=88.9
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHH---HHHHHhhh--hhhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFL---AGSALGGA--AFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~G~~ 82 (189)
++..|.++.+.++......++..++.++.|+++||+++++....+..+.. ++...... ..+.+......++.|++
T Consensus 279 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 358 (438)
T TIGR00712 279 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFL 358 (438)
T ss_pred HHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 34568898889999999999999999999999999975432223322221 11111111 12333333344455554
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHH-HHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIG-VLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
.............|.+|++.|+++.++.+....+| ..++|.+.+.+... .+|...+.+......+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---~g~~~~~~~~~~~~~~ 424 (438)
T TIGR00712 359 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSIL 424 (438)
T ss_pred HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh---ccchHHHHHHHHHHHH
Confidence 32222222346789999999999999998877776 56788887666543 3677777665544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=82.81 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=119.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~ 82 (189)
.|.+++..|++.+..+++.-++.++..+|+.+.|++.|| +.|+.+.....+.++......+. ++.+..++.-++.|+.
T Consensus 235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a 313 (394)
T COG2814 235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA 313 (394)
T ss_pred HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 367778889999999999999999999999999999999 99999999888887777766654 4555666667777887
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.....+.....+++ ..++.+..+.+++...+++|..+|..+++.+.+. +++....+..+++.+....
T Consensus 314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~ 380 (394)
T COG2814 314 FSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALL 380 (394)
T ss_pred hhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHH
Confidence 77666666666677 4468889999999999999999999998877644 5888888888877776665
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=86.07 Aligned_cols=144 Identities=18% Similarity=0.134 Sum_probs=109.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHHHHH-HHHHHHHHHHhhhhh--hHHHHHHHHHHHhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASILVG-GTAFLAGSALGGAAF--NIYMLIFGRVLLGV 81 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~ 81 (189)
+.|..|++..++++..+.+-++.+.|.+++||++||+ |||..+.+. ++...++.+...+.+ |+.+..++-+..|+
T Consensus 279 L~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf 358 (448)
T COG2271 279 LSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGF 358 (448)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999995 788665554 444444445555554 45777788888898
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHH-HHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGI-GVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
..-+.+-.......|..|.+.-|++.|+...+..+ |...+....+.+. +.+||...|++..+.+++..+
T Consensus 359 ~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~---d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 359 LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA---DTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE---ecCCCcchHHHHHHHHHHHHH
Confidence 77777777778889999999999999998888877 6666655543333 336888888777666665554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-10 Score=97.60 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=107.4
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--------------------h
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--------------------F 67 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--------------------~ 67 (189)
.+.+|.++.+.+++.+.+.++.+++.++.|+++|+.++++.+..+.++.+++.+...+. .
T Consensus 253 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1140)
T PRK06814 253 KETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR 332 (1140)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence 34578999999999999999999999999999998887776666655555544433332 5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHH
Q 042942 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAA 146 (189)
Q Consensus 68 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 146 (189)
+.+.+++..++.|++.+...+...+++.+..|++.||+++++.++...+|..+++.+.+.+.... .++...+.+.++
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~ 409 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIAL 409 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHH
Confidence 66777788888999999999889999999999999999999999999999999998876654221 245555544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=81.38 Aligned_cols=133 Identities=9% Similarity=-0.004 Sum_probs=100.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
.+|+++++.+...+.+..+..++.++.+++.||+|+||.+.++..+.+++.++....++... ....++.|++.+..+|.
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~ 250 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT 250 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998888887777765554443332 23555789999999999
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
......+..|++ .+++.++. ....+|..+.|.+.+.+.+. .+.+..+++..+..
T Consensus 251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPVPCY 304 (310)
T ss_pred HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHHHHH
Confidence 888888888754 35566664 45668888888876555532 36677776544443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=86.03 Aligned_cols=122 Identities=10% Similarity=-0.122 Sum_probs=98.4
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+++.+|.++.+.+++.+...++..++++..+++.||.++|+.+..+.. .++..+...+.++++...+..++.|++.+..
T Consensus 232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~ 310 (393)
T PRK11195 232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFF 310 (393)
T ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 345678999999999999999999999999999999999988887753 3444444455666676677777889988888
Q ss_pred hhhhhHHHhhcCCccc-cchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 87 NQSVPLYLSEMAPPKN-RGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+.....+.|..|++. +|++.++.+....++..++..+...+.
T Consensus 311 ~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 311 VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8778888888766655 799999999999999988888866554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=90.98 Aligned_cols=147 Identities=13% Similarity=0.066 Sum_probs=125.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG--RKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 82 (189)
|...+..+.++.+.+.+.++..+...++.++.|+++|+.. ++.+..++.++.+++....++.++++.+...-++.|++
T Consensus 322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~ 401 (509)
T KOG2504|consen 322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC 401 (509)
T ss_pred HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999999999999977 45566677777788888888999999999999999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|......+..+.|+.+.++-..+.|+...+.+++.+++|++++.+....+ +|...|+..++..++...
T Consensus 402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~ 470 (509)
T KOG2504|consen 402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAV 470 (509)
T ss_pred HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHH
Confidence 999998888899999999999999999999999999999999887665554 477777777666655543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=84.92 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=103.0
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-FNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
+.+.+....+++.+...+.....+++.|.+.||+++|+.+..+..+..++.....+. ++.+.+.+..++.|++.+...+
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666777777777777778888999999999999999988888877666653 5666677788899999888888
Q ss_pred hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
....++.+..|++.|++..+..+ ...+|..++|.+++.+.+.. +....|.+.+...
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~---g~~~~~~~~~~~~ 373 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL---PPWSLFVILALAI 373 (395)
T ss_pred hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc---ChhhHHHHHHHHH
Confidence 88889999999999999888655 45589999999987776443 5555555543333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-09 Score=82.95 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=100.4
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---hh-H--H---HHHHHHHHH
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---FN-I--Y---MLIFGRVLL 79 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~-~--~---~~~~~~~l~ 79 (189)
++.|++..++.+.+....+...+..+++.++.||+|||+.++.+..+..+..+++... .+ . | ..+++.++.
T Consensus 298 ~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~ 377 (485)
T KOG0569|consen 298 KTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLF 377 (485)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999988888766543 11 1 1 123444444
Q ss_pred hhhhhhh-hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 80 GVGIGFA-NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 80 G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+..+.. -|...-+.+|++|++.|..+.++...+..+..++-.+.-..+.... |- +.|+..++++.+..+
T Consensus 378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---GP-YVFILFVIPLAIFLI 448 (485)
T ss_pred HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-hhhHHHHHHHHHHHH
Confidence 4444333 3566688899999999999999988777777666555544444333 22 445555555554444
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=84.88 Aligned_cols=145 Identities=16% Similarity=0.037 Sum_probs=93.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhH--------HHHHHHHH--HHHHHHhhh-hhhHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKAS--------ILVGGTAF--LAGSALGGA-AFNIYMLIFGR 76 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~--------~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~ 76 (189)
.+.+|.+..+.++..++..++..++.++.|+++||+++|+. +..+.... .+..+.... ..+....++..
T Consensus 289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (465)
T TIGR00894 289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL 368 (465)
T ss_pred HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45678999999999999999999999999999999865422 11111111 111111111 22333333444
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 77 VLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+.+.+.+...+.......|..|. .+|...++.+....+|..++|.+.+.+....+..+|+..|.+.++..++..+
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i 444 (465)
T TIGR00894 369 TLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI 444 (465)
T ss_pred HHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence 444544444444444455676664 8899999999999999999998866554322223588888888776666555
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=90.82 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=112.4
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh----hhcchhH-HHHHHHHHHHHHHHhhhh-h-------hHHHH
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRKAS-ILVGGTAFLAGSALGGAA-F-------NIYML 72 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~ 72 (189)
.+.+..|+++...+.+..+.-+..++..|+.|.++| |+||||. ++++....+++.++.... + ....+
T Consensus 27 f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~ 106 (428)
T PF13347_consen 27 FYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWL 106 (428)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHH
Confidence 345667999999999999999999999999999999 8998766 556777777777666654 3 12234
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhhhcccccC-C---cchHHHHHhhHHH
Q 042942 73 IFGRVLLGVGIGFANQSVPLYLSEMAP-PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKING-G---WGWRISLAMAAAP 147 (189)
Q Consensus 73 ~~~~~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~---~~w~~~~~~~~~~ 147 (189)
.+..++..++.........++..|..+ +++|.+..+....+..+|.++...+...+....+ . .+|++...+.+++
T Consensus 107 ~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv 186 (428)
T PF13347_consen 107 FVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIV 186 (428)
T ss_pred HHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHH
Confidence 666777788888888888899999998 5789999999888888888655555443332222 1 2799888888877
Q ss_pred HHHHHh
Q 042942 148 ASILTI 153 (189)
Q Consensus 148 ~~~~~~ 153 (189)
..+..+
T Consensus 187 ~~v~~~ 192 (428)
T PF13347_consen 187 GLVFFL 192 (428)
T ss_pred HHHHhh
Confidence 776665
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=79.09 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=103.0
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVG-GTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
.++.+|+|+..++.+.+..+...++.+++.|.++||+|++-..+.+ ++....+.....++ .+.=.....+.|+.+..
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHH
Confidence 4678999999999999999999999999999999999998776654 34444444444332 12223445567888777
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHh
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAM 143 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~ 143 (189)
........++...|+++-|++.+..+...++|..+.|++++.+....+.+.|--.|++
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl 426 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL 426 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence 6666778888899999999999999999999999999998887765443455555443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=85.78 Aligned_cols=144 Identities=12% Similarity=0.056 Sum_probs=100.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh----hhcch-hHHHHHHHHHHHHHHHhhhhh------hHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR----AFGRK-ASILVGGTAFLAGSALGGAAF------NIYMLIFGR 76 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 76 (189)
.+..|+++..++.+..+.-+..++..|+.|.++| |+||| +.++++....+++.++....+ .+..+++..
T Consensus 34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~ 113 (473)
T PRK10429 34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTY 113 (473)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 4567999999999999999999999999999999 67994 556667777666655553322 123445566
Q ss_pred HHHhhhhhhhhhhhhHHHhhcC-CccccchhHHHHHHHHHHHHHHHHHhhhhc----ccccCCcchHHHHHhhHHHHHHH
Q 042942 77 VLLGVGIGFANQSVPLYLSEMA-PPKNRGAFNIGFQVSVGIGVLSDNLLNYGT----EKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
++.++++.....+..++..|+. ++++|.+..+....+.++|..+.+.+...+ ....+..+|+....+.+++..+.
T Consensus 114 ~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~ 193 (473)
T PRK10429 114 ILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVS 193 (473)
T ss_pred HHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 6778888888888889999998 589999988886666676655554443221 11111236777666666555443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=83.70 Aligned_cols=139 Identities=6% Similarity=-0.073 Sum_probs=102.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++.+|+++.++++....+.++..++.++.+++.||+|+|+++..+..+.+++..+..+.++.. .+....+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999988877776666555544432 2455677899999999
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASILT 152 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~ 152 (189)
|.......|..|++ .+.+.++..... +|..++|.+.+.+.+. .| -+..|++..+..+...
T Consensus 366 P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~~i~G~l~~~---~g~~~~~~~v~~~~~~~~~ 426 (438)
T PRK10133 366 PTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVTPVMGFVSDA---AGNIPTAELIPALCFAVIF 426 (438)
T ss_pred HHHHHHHHcccchh-hccchhHHhHHh-ccchHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHH
Confidence 99999999988754 567777665433 5566666555545433 24 6677765554444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-10 Score=84.84 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=106.8
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh-------hHHH----HHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF-------NIYM----LIFG 75 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~ 75 (189)
+++++++++.+++.+...+.+...+..+.+|+++||+|.+|++.+.....+++..+..+.. +... ++..
T Consensus 245 ~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l 324 (417)
T COG2223 245 LVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL 324 (417)
T ss_pred HHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999888887776542 2333 3444
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+..|+|.|..+ .++..++|+ +-|...|+.....++|.+.-|..-+.....++ .+...|++...+.+++.+
T Consensus 325 ~~~~G~GnGsvf----k~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v 395 (417)
T COG2223 325 FVFAGLGNGSVF----KMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALV 395 (417)
T ss_pred HHHhccCcchhe----eechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHH
Confidence 555566655554 455555553 56888999999999998777777554444443 588888888888777776
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=80.78 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA--AFNIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
+..+.+.....+..+++.+++++++||+|+|+.+.++..+.++..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666778888999999999999999999887766654432222 3466667778888999999999999999
Q ss_pred HhhcCC-------ccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 94 LSEMAP-------PKNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 94 ~~e~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
++|..+ .+..|...+...++..+|..+++.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999886 22335567788888888888888876554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=80.84 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=77.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++++|+++.+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+.......+.+.+.+...
T Consensus 231 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 310 (392)
T PRK10473 231 MEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGF 310 (392)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678898899999999999999999999999999999999999988888888777766555444444444444444333
Q ss_pred hhhhHHHhhcCCcccc-chhHHHHHHHHHHHHHHHHHh
Q 042942 88 QSVPLYLSEMAPPKNR-GAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~~ 124 (189)
+. .+..+..|.++| +.+.++......+|..+++.+
T Consensus 311 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l 346 (392)
T PRK10473 311 GV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWL 346 (392)
T ss_pred HH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 32 333455565555 334444444444444444444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-09 Score=80.35 Aligned_cols=138 Identities=10% Similarity=-0.026 Sum_probs=86.0
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc---hhHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR---KASILV-GGTAFLAGSALGGAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 80 (189)
|.+.++.|++.+ .+...++..+...++ .++++||..| |+.... ...+.++.....++..+.....+.-.+.+
T Consensus 216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 291 (368)
T TIGR00903 216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG 291 (368)
T ss_pred HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 444455666654 455555555544444 4778887754 333332 33333444434444444444444555667
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
++....++....+.+|.+|++.|+++.|+.+...++|+.++|++...+.. +....|.+.+++.++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~ 357 (368)
T TIGR00903 292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIA 357 (368)
T ss_pred HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHH
Confidence 77777777788899999999999999999999999999888888654442 4444555544444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-08 Score=77.50 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=110.2
Q ss_pred cccc-CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh-hhHHHHHH----HHHHHhhh
Q 042942 9 NYCN-FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA-FNIYMLIF----GRVLLGVG 82 (189)
Q Consensus 9 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~G~~ 82 (189)
++.| .+.+..+.+.++..+.-++.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+.... ...++|+.
T Consensus 235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~t 314 (400)
T PF03825_consen 235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLT 314 (400)
T ss_pred HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHH
Confidence 3444 666677777777778888888899999999999999999999999988888876 44443333 34569999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHH-HHHHHHHHHHHhhhhcccccC---CcchHHHHHhhHHHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQV-SVGIGVLSDNLLNYGTEKING---GWGWRISLAMAAAPASILT 152 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~ 152 (189)
.+..+.....++.+..|++.|+++++++.. ..++|..++..+++.+.+..+ ...|...+.+.+.+.++..
T Consensus 315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~ 388 (400)
T PF03825_consen 315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL 388 (400)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998665 568999999999887665432 1245555555555444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=77.13 Aligned_cols=124 Identities=10% Similarity=-0.072 Sum_probs=90.0
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hh--hhhHHHHHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GA--AFNIYMLIFGRVLL 79 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~ 79 (189)
|.+.+++|.++.+.++......++..++.++.+++.||+|+|+.+.......+++.+.. .. .++....+....+.
T Consensus 227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (401)
T PRK11043 227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM 306 (401)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 44556688999999988888888899999999999999999987766555544443322 11 23444555566677
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
|++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~ 355 (401)
T PRK11043 307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI 355 (401)
T ss_pred HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88888888887777777776 57999999988877766666666655443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-08 Score=75.23 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=82.8
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh---hh-hhHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG---AA-FNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~G~~~ 83 (189)
.+++|.++.+.+++.+...++..++.++.+++.||+|||+.+.++..+..+..+... .. .+.+...++..+.+.+.
T Consensus 222 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (377)
T PRK11102 222 IELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCV 301 (377)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999888776544432222 11 23344444444444444
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHH-HHHHHHHHHHHhhh
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQV-SVGIGVLSDNLLNY 126 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 126 (189)
+........++.|..| ++|++..+..+. ...+|..++++++.
T Consensus 302 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 302 SMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566777766 788999888554 34577777777754
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=79.92 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=105.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchhHH-HHHHHHHHHHHHHhhhhhh------HHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKASI-LVGGTAFLAGSALGGAAFN------IYMLIFGR 76 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 76 (189)
.+..|+++..++.+..+.-+.-++.-|+.|.++|| +||||.. +++....+++.++....++ ...+++..
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITY 116 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 35679999999999999999999999999999996 7887664 4565666666655543331 23345566
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhhhcccccC----CcchHHHHHhhHHHHHHH
Q 042942 77 VLLGVGIGFANQSVPLYLSEMAP-PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKING----GWGWRISLAMAAAPASIL 151 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~w~~~~~~~~~~~~~~ 151 (189)
.+..+++.....+..++.+|+.+ +++|++..+....+..+|..+++.+...+....+ ..+|+....+.+++..++
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~ 196 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMM 196 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 67788888888888899999997 8889999999998888888777666433222111 236777666666655544
Q ss_pred H
Q 042942 152 T 152 (189)
Q Consensus 152 ~ 152 (189)
.
T Consensus 197 ~ 197 (460)
T PRK11462 197 L 197 (460)
T ss_pred H
Confidence 4
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=78.74 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=86.7
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc-chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-RKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 85 (189)
.-++.|+|..++|.+.++..+..+++++++|.++||.+ +||.+.+..++.++..+.....++++.++...++..+....
T Consensus 28 ~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p 107 (400)
T PF03825_consen 28 YLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSP 107 (400)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence 34677899999999999999999999999999999985 57778777777777777777778888888888888888877
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHH
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~ 121 (189)
..+...++..+...+ ++.-.+-.-...++|..++
T Consensus 108 ~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~ 141 (400)
T PF03825_consen 108 TMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVA 141 (400)
T ss_pred HHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHH
Confidence 788777777777653 2333444444555555444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=80.95 Aligned_cols=124 Identities=7% Similarity=-0.053 Sum_probs=105.0
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHH
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA----------FNIYMLIFGRVL 78 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l 78 (189)
+..|.++.+.+.+.....++.+++....+.+.+|++.|+.+.++.++.+++....... ++.+..+...++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999998887554311 223344556778
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN 132 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 132 (189)
.+++.+..+.....++.+..|++.+++..++.....++|..+++.+++.+....
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 889888888889999999999999999999999999999999998877665443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=76.13 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF--NIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
+..+.+..++.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+....+
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888899999999999999999887765554444333332322 23334445566777776666666677
Q ss_pred HhhcCCc-----ccc--chhHHHHHHHHHHHHHHHHHhhhh
Q 042942 94 LSEMAPP-----KNR--GAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 94 ~~e~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
++|..+. .+| |...+...+...+|..+++.+++.
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777652 233 444455556666777766666443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=78.48 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=114.2
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAFN--------IYMLIFGRVL 78 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l 78 (189)
.+.+|++.+.+..+...+.....+..+++|+++|+ +||++++.++.++..++..+.++... ....+.+-.+
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL 94 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL 94 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence 45678888888888888888889999999999996 69999999999999999887765321 1234556667
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccc---cchhHHHHHHHHHHHHHHHHHhhhhccccc----CCcchHHHHHhhHHHHHHH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKN---RGAFNIGFQVSVGIGVLSDNLLNYGTEKIN----GGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 151 (189)
..+|.|+.-+...+...|.+++++ |.+...++..+.++|+++++.+...+.... ...+|...|.+.++..++.
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence 778889999999999999997643 556777888899999999888866554221 1346999998888777766
Q ss_pred Hh
Q 042942 152 TI 153 (189)
Q Consensus 152 ~~ 153 (189)
++
T Consensus 175 ~l 176 (654)
T TIGR00926 175 LI 176 (654)
T ss_pred HH
Confidence 55
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-09 Score=85.66 Aligned_cols=142 Identities=14% Similarity=0.089 Sum_probs=119.6
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~ 88 (189)
++.+-.+...|.....-..+-++.-++.+++..|+|+-+++.+++.+..+=.+.....+|.|+.+..-+++|+..+..|.
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHH
Confidence 34455556666666667788888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhcCCccccchhHHHHHH-HHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 89 SVPLYLSEMAPPKNRGAFNIGFQV-SVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 89 ~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+|++...|++.|.++.++.+. ..++|-.+|.++++.+.... +-|..|.+.++.+++.++
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---g~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---GARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998655 55788889999988776543 667777777766666555
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=79.02 Aligned_cols=129 Identities=12% Similarity=-0.061 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-h-----hhHHHHHHHHHHHhhhhhhhhhhhhHHHh
Q 042942 22 TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-A-----FNIYMLIFGRVLLGVGIGFANQSVPLYLS 95 (189)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 95 (189)
..+..+...+..+++|+++||+|+||++.++.....++...... . .+.+.+.+..+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 34445778888999999999999999999998877776643221 1 24455555444444444444445555666
Q ss_pred hcCCc---------------------cccchhHHHHHHHHHHHHHHHHHh-hhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 96 EMAPP---------------------KNRGAFNIGFQVSVGIGVLSDNLL-NYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 96 e~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+++|+ ++-|...|+......+|.++.|.+ +.... ..+ ++...|+...+.-++|.+
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~-~~g--~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN-MTG--SPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH-HcC--CcHHHHHHHHHHHHHHHH
Confidence 66663 134566777777778877777755 43332 222 566666666666666655
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=64.19 Aligned_cols=115 Identities=23% Similarity=0.192 Sum_probs=95.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 042942 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPL 92 (189)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~ 92 (189)
+++..-..-.++.+....+.+++.+.+.+++|.|+.++++.+++.+-.... +.++.+.++.+-.+.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 333333344567778888889999999999999999999999988666554 4567888899999999999999999999
Q ss_pred HHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 93 YLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 93 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
++.+..+++.|++..+++......+.++|.++...+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888887776544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=76.02 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=114.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 042942 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPL 92 (189)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~ 92 (189)
.++...|.+.++..+.-++.-.+..++.+|+|.|+.++++..+.++=...++++++.+.+...+.++|+-.+.......-
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 93 YLSEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 93 ~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
|+++.+|+|..++...+ .+....+|..+.+.+++.+.+ +.|.+..|++.+.+.+...+
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---~~G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---RIGFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---hcCcHHHHHHHHHHHHHHHH
Confidence 99999999998888887 577888888877777666553 34888888877777665554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-08 Score=78.46 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF--NIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
+..+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ +.+.+++..++.|++.+..++...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5677888888999999999999999999999999999999999998888775 88999999999999999999999999
Q ss_pred HhhcCCc-------cccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 94 LSEMAPP-------KNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 94 ~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
++|..+. ++.|...+...+...++..+++.+.+.+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 9999873 3347778888888888888888775543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=73.71 Aligned_cols=130 Identities=13% Similarity=0.086 Sum_probs=104.2
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh------hHH--HHHHHHHHHh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF------NIY--MLIFGRVLLG 80 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~G 80 (189)
..+| +.+.+-|++.+|++.+....+++-|+.||+|-|...+++..+.+++..+-..+. .++ ..+.+..+.+
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa 151 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAA 151 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHH
Confidence 3455 555677899999999999999999999999999999999999999998876542 233 5667888888
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc---CCcchHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN---GGWGWRI 139 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~w~~ 139 (189)
..+......-+-+..-|||+++|..+..+-.++..+|..++.++...+.... ++..|..
T Consensus 152 ~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~ 213 (480)
T KOG2563|consen 152 AAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLF 213 (480)
T ss_pred HhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHH
Confidence 8877776666677889999999999999988888888888888877665443 2345654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-07 Score=71.37 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhhhhhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF--NIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
|.++....+.......+.+++.+++..+++|+|+|+++.++.++.+++.++..+.+ +....++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44455556677777777788899999999999999999999999999998887765 6777788889999999999998
Q ss_pred hhHHHhhcCCc-------cccchhHHHHHHHHHHHHHHHHHhh
Q 042942 90 VPLYLSEMAPP-------KNRGAFNIGFQVSVGIGVLSDNLLN 125 (189)
Q Consensus 90 ~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (189)
..++++|..+- |.-|...+...++.-+|..++..+.
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999887642 2225556666666667766666553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-08 Score=77.22 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=79.6
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh--hh--hHHHHHHHHHHHhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA--AF--NIYMLIFGRVLLGVGI 83 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G~~~ 83 (189)
++.+|.++.+.+++.++..+...++.+++|+++||+|||+.+..+......+..+..+ .. +.....+..++.++..
T Consensus 253 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (366)
T TIGR00886 253 KDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFS 332 (366)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999998887777666665554443 22 4444444444455555
Q ss_pred hhhhhhhhHHHhhcCCccccchhHHHHHHHHHHH
Q 042942 84 GFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIG 117 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 117 (189)
+........++.|..| +++++..|+.+...++|
T Consensus 333 g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 333 GAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 5555556667778876 68999999877766554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-07 Score=70.95 Aligned_cols=121 Identities=16% Similarity=0.021 Sum_probs=88.6
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHH-HHHHHHHHhhh--hhhHHHHHHHHHHHhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGT-AFLAGSALGGA--AFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~ 85 (189)
+.+|.++.+.+++.....++..++.++.+++.||++++........ +..+....... ..+.+.+....++.|++.+.
T Consensus 236 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 315 (394)
T PRK11652 236 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM 315 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3478888889998888888999999999999999984333222222 22222122111 13455667778888999998
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
..+....+..|..| +++++..++.+....+|..+++.++..+..
T Consensus 316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 88988898999887 578999999999999999999998766543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=73.91 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=82.0
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh----cchhHH-HHHHHHHHHHHHHhh-----hhh--hHHHHH
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF----GRKASI-LVGGTAFLAGSALGG-----AAF--NIYMLI 73 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~~~~~-----~~~--~~~~~~ 73 (189)
.+++..|+++.+++.+..+..+..++..++.|+++||. ||||.. .++.+...+..++.. +.. .....+
T Consensus 34 y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (448)
T PRK09848 34 YYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAY 113 (448)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence 34566799999999999999999999999999999996 777755 555444443333321 111 122334
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCC-ccccchhHHHHHHH-----HHHHHHHHHHhhhh
Q 042942 74 FGRVLLGVGIGFANQSVPLYLSEMAP-PKNRGAFNIGFQVS-----VGIGVLSDNLLNYG 127 (189)
Q Consensus 74 ~~~~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~~~~~ 127 (189)
...++.+++.+...+...++..|..+ +++|.+..+....+ ..++..++|.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 114 LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788888888777777777765 46788776665443 23455566666543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-07 Score=69.09 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=93.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc-----chhHHHH-HHHHHHHHHHHhhhh-----h-------h
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG-----RKASILV-GGTAFLAGSALGGAA-----F-------N 68 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~ 68 (189)
+..|++++....+...+..++... ..+.+|+.+|+.+ ||..+++ |..+.+.+..+.++. . +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456788888888888888877754 6899999999988 7766555 555555555544432 2 1
Q ss_pred H--H--HHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 69 I--Y--MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 69 ~--~--~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
. + .......+.|++.+...+...++++|..|+++|++..++......+|.+++..+.+.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 1 23445667899999999999999999999999999999999999999999888855433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-07 Score=72.60 Aligned_cols=130 Identities=12% Similarity=0.004 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHH----hhhh-hcchhHH--HHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHhh
Q 042942 18 LTTFTSSLYIAGLIASLFASS----VTRA-FGRKASI--LVGGTAFLAGSALGGA---------AFNIYMLIFGRVLLGV 81 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~----l~d~-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~ 81 (189)
.+++.++..+..++.+++..+ +.+| .+++... .+|.++.+++....++ ..|++.++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 556777777777777766554 4443 2333333 6788888888777654 3588888999999999
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHH
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASI 150 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 150 (189)
+.....|....++.|..|++.||+.++++.....+|..+++.+....... .+|...|...++..++
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 459 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLL 459 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998886654322 2566555555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-07 Score=73.29 Aligned_cols=108 Identities=9% Similarity=0.007 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhhH----HHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHhhhhh
Q 042942 18 LTTFTSSLYIAGLIASLFA----SSVTRAFGRKASILVGGTAFLAGSALGGAAFN---------IYMLIFGRVLLGVGIG 84 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~----g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~~ 84 (189)
.+++.++..+...+..++. +++.+|++.++.+.+|+++.+++.+..+...+ .+.+...+++.|++..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 3455555555555555554 66666666778899999999999888766544 4577889999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLN 125 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 125 (189)
...|....++.+..|++.||+++|.+.....+|..++..+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888877776665
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=73.49 Aligned_cols=135 Identities=17% Similarity=0.076 Sum_probs=80.9
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHH--HHHh-hhh----hhHH-HHHHHHHHHh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAG--SALG-GAA----FNIY-MLIFGRVLLG 80 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~--~~~~-~~~----~~~~-~~~~~~~l~G 80 (189)
++.|++.+++|.+.++..+...+.+|+.|.++||+|.||.+++...+..+. .+.. .+. .|.+ ..+++-+..|
T Consensus 36 ~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~ 115 (412)
T PF01306_consen 36 QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLG 115 (412)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTT
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999887766554433322 2221 121 2222 2223333445
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHH
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPAS 149 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 149 (189)
+......++..++..++. ++.+.-.|-.-...++|..++..+++.+... +....|++....++
T Consensus 116 ~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~ 178 (412)
T PF01306_consen 116 LVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAI 178 (412)
T ss_dssp TTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHH
Confidence 555555565556555443 3334455666667777877777776655532 44556665544433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-09 Score=86.33 Aligned_cols=126 Identities=22% Similarity=0.152 Sum_probs=3.0
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh----hh------------
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA----AF------------ 67 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~------------ 67 (189)
.+.++++|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++ .+
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 36788999999999999999999999999999999999988889999999999999877754 00
Q ss_pred ----------------------------------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHH
Q 042942 68 ----------------------------------NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVS 113 (189)
Q Consensus 68 ----------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~ 113 (189)
.+..++++.++.|+|....++...+|+-|..++++-+..+|+.+..
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 0235677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcc
Q 042942 114 VGIGVLSDNLLNYGTE 129 (189)
Q Consensus 114 ~~~g~~~~~~~~~~~~ 129 (189)
..+|..+|.++++.+.
T Consensus 186 ~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 186 SILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------
T ss_pred hhccHHHHHHHHHHHH
Confidence 9999999988876544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9e-07 Score=67.56 Aligned_cols=146 Identities=16% Similarity=0.070 Sum_probs=109.8
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGI 83 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 83 (189)
|.+..|.|+|..+.++..+...+.....++....+++|. .+|+..+....++.++.+.+.+.+.-....- .++.|++.
T Consensus 232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~ 310 (395)
T COG2807 232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ 310 (395)
T ss_pred HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence 556678899999999999999999999999999999975 6777777777777777776666543222222 48899999
Q ss_pred hhhhhhhhHHHhhcCCcccc-chhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 84 GFANQSVPLYLSEMAPPKNR-GAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 84 ~~~~~~~~~~~~e~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
|..++.....+.+-.++.++ ++..+..|....+=..++|.+.+.+....+ +|+..+...+...+...+
T Consensus 311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLI 379 (395)
T ss_pred chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHH
Confidence 99999999888887765544 444555665555556677777776665554 898888877777776665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-07 Score=72.02 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=110.3
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchhH-HHHHHHHHHHHHHHhhhhhh------HHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKAS-ILVGGTAFLAGSALGGAAFN------IYMLIFGR 76 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 76 (189)
.+..|+++..++.+..+.=+.-++.-|+.|.++|| +||+|. ++++.+..++...++..+++ ..-.++..
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY 119 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTY 119 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHH
Confidence 35679999999999999999999999999999996 787554 66677777887777766552 33455677
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCC-ccccchhHHHHHHHHHHHHHHHHHhhhhccccc----CCcchHHHHHhhHHHHHHH
Q 042942 77 VLLGVGIGFANQSVPLYLSEMAP-PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN----GGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 77 ~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~ 151 (189)
.+.++++.....+..++.+|+.+ +++|.+..+.-+.+.++|.++...+...+.... ...||+....+.+++..+.
T Consensus 120 ~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 120 MLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 78899999988888899999885 788999999999888888666655543322221 1458888777777776555
Q ss_pred Hh
Q 042942 152 TI 153 (189)
Q Consensus 152 ~~ 153 (189)
.+
T Consensus 200 ~l 201 (467)
T COG2211 200 LL 201 (467)
T ss_pred HH
Confidence 54
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-10 Score=89.48 Aligned_cols=123 Identities=17% Similarity=0.035 Sum_probs=79.2
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh--h--hhhH-----HHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG--A--AFNI-----YMLIFG 75 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~ 75 (189)
|.+.+..+.++. -.......+...++.+...++.||+|||+.++.+..+.+++.+..+ . ..+. ...++.
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF 354 (451)
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 444555666655 2222334455566777777999999999999999888888877664 1 1111 111222
Q ss_pred HHHHhhhhh-hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 76 RVLLGVGIG-FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 76 ~~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
-.+.....+ ...+....+..|.+|++.|+++.++......++..+++.+...+.
T Consensus 355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred eeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222222222 223455578899999999999999988888888887777754433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=68.00 Aligned_cols=116 Identities=6% Similarity=-0.141 Sum_probs=86.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 042942 12 NFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+.+....+...+.+..+..+|.++.+++.||+++|+++.+...+.++..++..+.++... ...-++.|++.+..+|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~ 343 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY 343 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence 334444455666677888999999999999999999998888888888877777665443 4566677888889999999
Q ss_pred HHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 92 LYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
.+..+..+++.+.....+.. . .+|..+.|.+.+.+.+
T Consensus 344 sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 344 GIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHH
Confidence 99999998776533333333 2 2888888888766664
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=56.29 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=63.1
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYML 72 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (189)
-|.++++.++|.++.+++.+..++||.+|.+....+.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 488899999999999999999999999999999999999888899999999999999999988776654
|
Note that many members are hypothetical proteins. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=64.28 Aligned_cols=137 Identities=19% Similarity=0.127 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHH-HHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 17 LLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVG-GTAFLAGSALGGAA--FNIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
..++..++..+..++..|+.|-++|+-|+||.++.. ..+..+++....+. ++++...+..++..++++.......++
T Consensus 71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888899999999999999998877766655 44444555555553 344555556666677888888888899
Q ss_pred HhhcCCcccc--------------------------chhHHHHHHHHHHHHHHHHHhhhhcccccC-----CcchHHHHH
Q 042942 94 LSEMAPPKNR--------------------------GAFNIGFQVSVGIGVLSDNLLNYGTEKING-----GWGWRISLA 142 (189)
Q Consensus 94 ~~e~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~w~~~~~ 142 (189)
+.|+.+++.+ ++..+.-.....+|+++.-.+...+....+ ..+.|..+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~ 230 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL 230 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence 9999999998 888888777777887777666544322221 234677777
Q ss_pred hhHHHHHHHHh
Q 042942 143 MAAAPASILTI 153 (189)
Q Consensus 143 ~~~~~~~~~~~ 153 (189)
+.++..++..+
T Consensus 231 ~~a~ww~vfsi 241 (477)
T PF11700_consen 231 IVALWWLVFSI 241 (477)
T ss_pred HHHHHHHHHHH
Confidence 77666555544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.9e-07 Score=70.92 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=96.9
Q ss_pred cccc-ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc---------hhHHHHHHHHHHHHHHHhhhhhh--H-HH
Q 042942 5 TNIS-NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR---------KASILVGGTAFLAGSALGGAAFN--I-YM 71 (189)
Q Consensus 5 p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr---------r~~~~~~~~~~~~~~~~~~~~~~--~-~~ 71 (189)
|... +-+|++-.+.+++.++..+...+..+++|.++||.-+ |-.=.++....+++.+..++.++ . ..
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a 361 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA 361 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence 4443 4579999999999999999999999999999998744 22223344445555555555542 1 12
Q ss_pred HH---HHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 72 LI---FGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 72 ~~---~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
+. +...+.|+..++.... ..+. .+++-+..+++.+....++.+++|.+...+....+...|+..|.+.+.+.
T Consensus 362 ~~~l~~~~~~~g~~~~Gf~~~----~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~ 436 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISGFYKN----HQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGIL 436 (466)
T ss_pred HHHHHHHHHHcccchhhhHhh----hhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHH
Confidence 11 1222333333333321 1222 45667899999999999999999999777664223458999999998887
Q ss_pred HHHHh
Q 042942 149 SILTI 153 (189)
Q Consensus 149 ~~~~~ 153 (189)
++..+
T Consensus 437 ~~~~i 441 (466)
T KOG2532|consen 437 IVGNI 441 (466)
T ss_pred HHhch
Confidence 76655
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-06 Score=68.87 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=70.6
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhH------------HHHH--H
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNI------------YMLI--F 74 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--~ 74 (189)
+..|.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+..... +..+ .
T Consensus 323 ~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 323 KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 444554333 455556667777888888999999999999999999999999877653211 1111 1
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHH
Q 042942 75 GRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIG 117 (189)
Q Consensus 75 ~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 117 (189)
+-++..+.. +..+....+.+|.+|.+.|+++.++........
T Consensus 402 ~~~v~~f~~-g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 402 CLFIFSFAI-GWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLW 443 (513)
T ss_pred HHHHHHHhc-ccccchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence 222222222 223445578899999999999888855444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=61.94 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=120.3
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh-hhcchhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR-AFGRKASILVGGTAFLAGSALGGA---AFNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G 80 (189)
|.=-+-+|++..+.+.++.....|..++-...|++.. |.++++...+++...+++..+..+ ..+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4444568999999999999999999999999998877 678888888998888888766544 457788888999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc----c---CCcchHHHHHhhHHHHHHHHh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI----N---GGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---~~~~w~~~~~~~~~~~~~~~~ 153 (189)
++.|.+.......+-+..++++.|..+|.+.....++..++..+++.+... . ...+|-..|.+.++..++...
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999998889999999999999999999999999888888887754321 1 223677777777766665544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-07 Score=70.61 Aligned_cols=141 Identities=14% Similarity=0.040 Sum_probs=107.5
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG--RKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+.+..+..+.+...--..+.+.++..+.|.+.||++ |......+++...+......+.+++..+.+-++..+++.+..
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~ 378 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLA 378 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHH
Confidence 344444446666666677899999999999999999 655566667777777788888999999999888888888777
Q ss_pred hhhhhHHHhhcCCcc------ccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 87 NQSVPLYLSEMAPPK------NRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
.......+.+..+.+ ..|...++....+.+|..++|.+++.+.+.. |++|...+.++..++..
T Consensus 379 dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i---GF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 379 DASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI---GFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh---hHHHHHHHHHHHHHHHH
Confidence 766665555555433 4467888999999999999999998877654 78887777766665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-06 Score=67.77 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=93.4
Q ss_pred HHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--hhhhhhhhhhHHHhhcCCcccc
Q 042942 26 YIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGV--GIGFANQSVPLYLSEMAPPKNR 103 (189)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~~~~~~~~~~~~~e~~~~~~r 103 (189)
.+...+.++..|.++||+|||..+.+......+..++..+.. +|.++ +.++ +.+.......++++|....+.|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHH
Confidence 567788899999999999999999999888888887776654 33333 3333 3344456677899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 104 GAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 104 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
....++.+..+..+..++|.++....... +....|.+..+..++..+
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~ 193 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLL 193 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766543 666677777666655554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.2e-06 Score=66.74 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcchhH-------HHHHHHHHHHHHHHhh-----hh-----hhHHHHHHHHHHHhh
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGRKAS-------ILVGGTAFLAGSALGG-----AA-----FNIYMLIFGRVLLGV 81 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G~ 81 (189)
+++.+...+..++..++.+.+.||+++|+. +.+|+++.+++.+..+ .. .+.+.+....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 455556666777888889999999998873 6677777666654321 11 245667778889999
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGT 128 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (189)
+.+...+....++.+..|++.++.++++++....+|..++..++...
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888876543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-05 Score=63.16 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=76.4
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG-----AAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~G~~ 82 (189)
++.+|.++.+.++.......+..++..+.+.+.++..+++.+.....+..++..+.. ..+++...++..++.+++
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G 325 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFG 325 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 445689999999988778888888888887776554444443333223233322221 123333456677778888
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
.+...+......- .-.+..+|++.++.+.....+...++..+..+..
T Consensus 326 ~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~ 372 (413)
T PRK15403 326 IGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF 372 (413)
T ss_pred HHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776664221 2223347999998888777777777777665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=65.20 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc--C---------
Q 042942 65 AAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN--G--------- 133 (189)
Q Consensus 65 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~--------- 133 (189)
...+++.+++..++.|.|.+..++..+.++++..|++++.+.+++.+.++.+|..++|.++..+.... +
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999977554211 0
Q ss_pred --CcchHHHHHhhHHHHHH
Q 042942 134 --GWGWRISLAMAAAPASI 150 (189)
Q Consensus 134 --~~~w~~~~~~~~~~~~~ 150 (189)
...|++++++.+.+..+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 13789988866544333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=64.97 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHhhhhhhhhhhhhHHHhhcCC
Q 042942 23 SSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIY---MLIFGRVLLGVGIGFANQSVPLYLSEMAP 99 (189)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~~~~~~~~~~~~~e~~~ 99 (189)
+........+....+...|++|||.....+.++..++.+..++..... ...+...+...+.+..+.....+..|++|
T Consensus 357 ~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p 436 (521)
T KOG0255|consen 357 TLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIP 436 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333345556666678899999999999999999999998888765432 24444444455555666666889999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 100 PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 100 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
+..|..+.+.......+|.+++|.+......
T Consensus 437 t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 437 TVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999765544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-07 Score=74.26 Aligned_cols=136 Identities=16% Similarity=0.053 Sum_probs=91.9
Q ss_pred HHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhh-H---HHHHHHHHHHhh-hhhhhhhhhhHHHhhcCCccc
Q 042942 28 AGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFN-I---YMLIFGRVLLGV-GIGFANQSVPLYLSEMAPPKN 102 (189)
Q Consensus 28 ~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~l~G~-~~~~~~~~~~~~~~e~~~~~~ 102 (189)
++..|..+...++|++|||+..+.+++++++..+..+...+ . ..+++...+..+ +.-+.....-.+-+|.+|.+.
T Consensus 360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 33446667778899999999999999999999988877544 1 122222222222 111122334466799999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccc--ccCCcchHHHHHhhHHHHHHHHh------hcCCcccccc
Q 042942 103 RGAFNIGFQVSVGIGVLSDNLLNYGTEK--INGGWGWRISLAMAAAPASILTI------ETKNLPIEQM 163 (189)
Q Consensus 103 r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~------e~~~~~~~~~ 163 (189)
|++..++...+.-+|.+++...-..+.. .....+.+..+++.+.+.+.-.+ |+.++.+++.
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei 508 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEI 508 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCHHHh
Confidence 9999999999999999888777443332 11134778888888877776666 6655554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=67.16 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=102.9
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh---c--chhHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF---G--RKASILVGGTAFLAGSALGGAA----FNIYMLIF 74 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~---G--rr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 74 (189)
.|.+++++|+++.+...+.++..+.. ...++.|.++|.+ | ||+.++++.++..++....+.. .+.....+
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 91 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV 91 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence 46677899999999988887777764 4578889999986 3 5555666777765555544442 34556666
Q ss_pred HHHHHhhhhhhhhhhhhHHHhhcCC--ccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 75 GRVLLGVGIGFANQSVPLYLSEMAP--PKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 75 ~~~l~G~~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
..++..++........-++..|... ++.|+...+....+..+|.+++..+++.+... .+++..|.+.+++..+.
T Consensus 92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHH
Confidence 7778888999999999999999883 33367778888888888999888887665543 35666666555444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-08 Score=72.95 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGG---AAFNIYMLIFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~ 82 (189)
..++.+++.++..++.+++..-..+.++++|++.|| +|-|..-++-+....++.++++ ..+.+|++..+||+.|+|
T Consensus 70 fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIG 149 (459)
T KOG4686|consen 70 FKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIG 149 (459)
T ss_pred hhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccC
Confidence 344556667788899999999999999999999996 6888776666666677776665 468899999999999999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNY 126 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (189)
.-...+.-..|..-|+..|+-+...|+......+|+.+...+-.
T Consensus 150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~ 193 (459)
T KOG4686|consen 150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMP 193 (459)
T ss_pred chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecH
Confidence 88777788899999999999999999999899999876655533
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=51.43 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=45.4
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHH
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAF 56 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~ 56 (189)
|...++.|+++.+++.+.++..+...++++++|.++||+++++.++....+.
T Consensus 24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3445678999999999999999999999999999999999998887765543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-05 Score=59.89 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=108.8
Q ss_pred cccc-ccCCchhHH-HHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 7 ISNY-CNFDSQLLT-TFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 7 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
+.++ .+++.++.. -+.-+..=.+....++...++|..+.|++++++.+...+...+..+.++...+-+..+..|+..+
T Consensus 30 L~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a 109 (412)
T PF01770_consen 30 LTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA 109 (412)
T ss_pred HcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH
Confidence 3343 678877664 45566666777888899999999999999999999999999999899999999999999999886
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMA 144 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~ 144 (189)
. ..+..+|+-...|+++--++.+.......+|..++..++..+.... +.+++....+.
T Consensus 110 ~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~-~~sy~~L~~is 167 (412)
T PF01770_consen 110 A-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG-GVSYFQLNYIS 167 (412)
T ss_pred H-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHH
Confidence 6 5567788888888888888999988888899999999988776532 33555554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=58.74 Aligned_cols=133 Identities=13% Similarity=-0.020 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHHH
Q 042942 20 TFTSSLYIAGLIASLFASSVTRAFGR-KASILVGGTAFLAGSALGGAAFN---------------------IYMLIFGRV 77 (189)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 77 (189)
+...++.+...+.+++-.++.+|+|+ |++..++.++.+++.....+.++ .+..++...
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA 388 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence 34445555556777788889999985 67778888888888877765443 256677778
Q ss_pred HHhhhhhhhhhhhhHHHhhcCCcc--ccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 78 LLGVGIGFANQSVPLYLSEMAPPK--NRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 78 l~G~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+.|+..+.....-.+++++..+++ ..|..+|+.|.+..+.+++..+..+.+....+. +-...+.+.++..++..+
T Consensus 389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~ 465 (477)
T TIGR01301 389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGL 465 (477)
T ss_pred HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHH
Confidence 899999999988889999999954 458999999999999998888765554333321 234455555555544433
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-06 Score=70.47 Aligned_cols=126 Identities=21% Similarity=0.123 Sum_probs=109.8
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh------------------
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA------------------ 66 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------------------ 66 (189)
..+++.++++.++.|++.+.+-++..+...+..++.-|.-|-|.+-+|.++++++.++.++=
T Consensus 121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 56778999999999999999999999999999999999988899999999999998887650
Q ss_pred --h--------------------------------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHH
Q 042942 67 --F--------------------------------NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQV 112 (189)
Q Consensus 67 --~--------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~ 112 (189)
+ -+..++.+.++.|+|....++....|+-|....++-...+|+.+.
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~ 280 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYS 280 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHH
Confidence 0 012566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccc
Q 042942 113 SVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 113 ~~~~g~~~~~~~~~~~~~ 130 (189)
...+|.++|.+++.+...
T Consensus 281 ~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 281 MAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999888876543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.3e-05 Score=58.44 Aligned_cols=138 Identities=8% Similarity=0.045 Sum_probs=102.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
..|+++.+.....+.+..+.++|.++..++..|+...|.+.+..++..+.++...+.++...+. +-++.|+..+..+|.
T Consensus 266 ~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPT 344 (422)
T COG0738 266 LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPT 344 (422)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHH
Confidence 3788899999999999999999999999999999999999998888888888888888865544 455678899999999
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
......+..| ++ ....+..-....+|+.+.|.+-+.+... .+-...+....+++.+.++
T Consensus 345 Ifslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~---~g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 345 IFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADM---FGIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred HHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Confidence 9999999998 33 3333333334455666677775555533 3555555544445544444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=58.14 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=103.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHH-HhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFAS-SVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
...+++++.+.+.+.+.......+++.+.. .+...+|-|+++.+|++.-.+.....+++++.|+++...++.++. ...
T Consensus 269 ~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~ 347 (463)
T KOG2816|consen 269 KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIV 347 (463)
T ss_pred eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cch
Confidence 456899999999888888888888887766 677778999999999999999999999999999998888887665 466
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
.+...+.++.+.+++++|+..++....-.+..+++|.+-..
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 78888999999999999999999999999999888888443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00041 Score=54.41 Aligned_cols=138 Identities=12% Similarity=-0.030 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhH-HHHHHHHHHHHHHHhhhhhh--H-HHHHHHHHHHhhhhhhhhhhhh
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKAS-ILVGGTAFLAGSALGGAAFN--I-YMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+..+...++..+..++..|+-|.++|+.|+||. +-....+..++.+...+.++ + +..++...+..++.....+...
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 445667778888889999999999999987655 44455555666666666644 4 3444556677888888888888
Q ss_pred HHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc---------------cCCcchHHHHHhhHHHHHHHHh
Q 042942 92 LYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI---------------NGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+++.+..++++-++..+.-.....+|+.+.-++....... .+...-|..+.+.++-.++..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 9999999988878777765555555555544442111000 1234567777777666666555
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=59.84 Aligned_cols=131 Identities=11% Similarity=-0.001 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhcch--------hH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 042942 21 FTSSLYIAGLIASLFASSVTRAFGRK--------AS-ILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVP 91 (189)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~~Grr--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~ 91 (189)
+.++..++..+|.+..|.+....-+| .. +.+..+ +.++.++.++......+++..++.|++.|..++...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 78888899999999999887221111 22 333333 666666666554446889999999999999999999
Q ss_pred HHHhhcCCccccchhHHHHHHHHHHHHHHH-HHh-hhhccccc---C------CcchHHHHHhhHHHHHHHHh
Q 042942 92 LYLSEMAPPKNRGAFNIGFQVSVGIGVLSD-NLL-NYGTEKIN---G------GWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 92 ~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~-~~~-~~~~~~~~---~------~~~w~~~~~~~~~~~~~~~~ 153 (189)
..++|+|. |+-|+-..+......+|+.+- ..+ +.+..... + ..=++..|.+.+..+++..+
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~ 546 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI 546 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence 99999999 888887777777777776553 333 32221111 0 01256677777666665555
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=59.59 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=80.3
Q ss_pred ccccc-ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchhHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHH
Q 042942 6 NISNY-CNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKASILVGGTAFLAGS-ALGGAAFNIYMLIFGRVLL 79 (189)
Q Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 79 (189)
.+.++ .|++..+++.+.+.+.++.+++.+++|+++|| ..+|........+..+.. .......+.......-+..
T Consensus 298 l~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 377 (495)
T KOG2533|consen 298 LYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIG 377 (495)
T ss_pred HHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhc
Confidence 33344 56888999999999999999999999999999 666666666655554444 3333333233333333333
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccc-hhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRG-AFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLA 142 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~ 142 (189)
..+.....+......++....+.|. ...+....+.+.+..++|.+-. ....+.+.|-..|.
T Consensus 378 ~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~--~~~ap~y~~~~~f~ 439 (495)
T KOG2533|consen 378 PYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR--SLDAPRYGWGAVFY 439 (495)
T ss_pred chhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc--cccCcchhhhhHHH
Confidence 4445555566667777766555543 3334444455555555544421 11223346666663
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00092 Score=53.45 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCcc
Q 042942 22 TSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPK 101 (189)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~ 101 (189)
.++.+....+.+++.+.+.|+.|.|..+.++..++........+ .|-+-++....+.|+|.+..+.....|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67788888999999999999999999999999999888776655 56677788889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 102 NRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 102 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+.+..++.......+.++|..+-..+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~ 162 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYF 162 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence 9999999977777777777766644433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=56.49 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=101.7
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhc--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 9 NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFG--RKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
+.+|.++.+.|-+.+...+...+.+....+..||.. -+-.+..+..+..-..++.........+..+..+..+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 568899999998888888888888888788888875 566666677777666677777777888888888889988888
Q ss_pred hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 87 NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+....++....|.++||..+|+......++..+||.+++.+.
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 8888899999999999999999999999999999999986544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00029 Score=55.06 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccc---cchhHHHHHHHH
Q 042942 47 ASILVGGTAFLAGSALGGAAF---------NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKN---RGAFNIGFQVSV 114 (189)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~ 114 (189)
|+++++.+++.+|.++..++. +...++++.++.++|.|+.-+....+..|.+++++ |.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 678888899999988854431 12467788888999999999999999999998763 455667789999
Q ss_pred HHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 115 GIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 115 ~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
++|..+++.+...+.+ +.+|.+.|.+.++..++.++
T Consensus 82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~ 117 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALI 117 (372)
T ss_dssp HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHH
Confidence 9999999888766663 35899999988877766655
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=56.31 Aligned_cols=108 Identities=16% Similarity=0.042 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 17 LLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVGGTAFLAGSALGGAA--FNIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
..++....+.++..++.++.|.+.-+++| |..++++..++.++.-+++.. +|....++.-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 56777778888889999999999988887 445566766666554444332 455566677888999998888877777
Q ss_pred HhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 94 LSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 94 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
..-..|++.-+.+.++....-.+|+.++..+
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7778899988999988777777776666554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0024 Score=51.91 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcc--hh-----HHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHhh
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRAFGR--KA-----SILVGGTAFLAGSALGGAA---------FNIYMLIFGRVLLGV 81 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~ 81 (189)
.+|+.++..+..++.+|+.+++=.|..| |. =+.+|+++.+++.+++.+. .+.++++...+++.+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5677777777777778777777555532 21 1667777777777655431 255667888999999
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHH-HHHHHHHHHhhhhc
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSV-GIGVLSDNLLNYGT 128 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~ 128 (189)
|.-...|...+++++..|++.||..+|.+.... .+|..++..++...
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999987643 67777776665544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0099 Score=48.03 Aligned_cols=116 Identities=9% Similarity=0.020 Sum_probs=82.3
Q ss_pred CchhHHHHHHHHHHHHHHH-HhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--h---h-------------------
Q 042942 14 DSQLLTTFTSSLYIAGLIA-SLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--F---N------------------- 68 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~---~------------------- 68 (189)
..+...++-+...+...+. .++.+++++|++|++.+.+....+.....++++. + .
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467888888777776666 8999999999999999888766666665554432 0 0
Q ss_pred -------HHHHHHHHHHHhhhhhhhhh-hhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 69 -------IYMLIFGRVLLGVGIGFANQ-SVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 69 -------~~~~~~~~~l~G~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.|...+..+...+-...... ....+.+|.+..++-.|..++...+.++|.++++.+...+.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333333333333 67789999999999999999999999999999998866554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=5.7e-05 Score=59.54 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=90.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh----hcchhHHHHH-HHHHHHHHHHhhhhhh-----------
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA----FGRKASILVG-GTAFLAGSALGGAAFN----------- 68 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~~~-~~~~~~~~~~~~~~~~----------- 68 (189)
|+...+.|++.+..+.+--+.-+...+.+|+.|..+|| |||||.++.. .+...++.++..++..
T Consensus 56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~ 135 (498)
T KOG0637|consen 56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK 135 (498)
T ss_pred cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence 34445678887777777777777788899999999996 8988876665 5555666666665432
Q ss_pred ------HHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccch-hHHHHHHHHHHHHHHHHHhhh
Q 042942 69 ------IYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGA-FNIGFQVSVGIGVLSDNLLNY 126 (189)
Q Consensus 69 ------~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~ 126 (189)
...++++..+.=++.-..+..+-+++.|.....++-+ +++.+..+..+|..++..++.
T Consensus 136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 2234445555556666777888899999998777777 999999999999999888875
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0045 Score=51.18 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhhh------------------
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAFN------------------ 68 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~------------------ 68 (189)
.++++.+...+.-.++.+.-......+.+++++|.| ||-+++.++.++..++.++..+...
T Consensus 65 t~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c 144 (571)
T KOG1237|consen 65 TLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVC 144 (571)
T ss_pred HHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcc
Confidence 355666666777777778888888889999999975 9999999999988888655543211
Q ss_pred -------HHHHHHHHHHHhhhhhhhhhhhhHHHhhcCC---ccc-c--chhHHHHHHHHHHHHHHHHHhhhhcccccCCc
Q 042942 69 -------IYMLIFGRVLLGVGIGFANQSVPLYLSEMAP---PKN-R--GAFNIGFQVSVGIGVLSDNLLNYGTEKINGGW 135 (189)
Q Consensus 69 -------~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~---~~~-r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 135 (189)
...++...-+..+|.|+.-+....+-+|-++ ++. + .....++.+..++|..++-.+..... ++.
T Consensus 145 ~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq---~~~ 221 (571)
T KOG1237|consen 145 ESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ---DNV 221 (571)
T ss_pred cCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh---hcc
Confidence 1244555556677888989999999999998 322 2 25566777788888888776654443 334
Q ss_pred chHHHHHhhHHHHHHHHh
Q 042942 136 GWRISLAMAAAPASILTI 153 (189)
Q Consensus 136 ~w~~~~~~~~~~~~~~~~ 153 (189)
+|.+.|.+..+...+.++
T Consensus 222 ~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 222 GWKLGFGIPTVLNALAIL 239 (571)
T ss_pred cceeeccHHHHHHHHHHH
Confidence 888877766655554444
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=49.36 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=67.7
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
-+++++.+.+++.+...-+...++...+.|-++||-|||+.-+.-++.++++++ .-.++.+..++++|.+-|+..+..+
T Consensus 64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF 142 (454)
T ss_pred ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence 356788888888877666666777778888899999999986666665555543 3356788889999999999998888
Q ss_pred hhhhHHH-hhc
Q 042942 88 QSVPLYL-SEM 97 (189)
Q Consensus 88 ~~~~~~~-~e~ 97 (189)
.....+. .|-
T Consensus 143 SaFEsWliaEH 153 (454)
T KOG4332|consen 143 SAFESWLIAEH 153 (454)
T ss_pred HHHHHHHHHHh
Confidence 8777654 444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=46.85 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHH--HHHHHHHHHH---hhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVG--GTAFLAGSAL---GGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
.++..+...++.+|-.++.--...+ |+ |+..+.. ..+..+..++ .-+.++.+..++..+..|+..|..++.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 5677788888888877776443322 33 3333332 2222222222 234578888888999999999999999
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
....+.|-.|+++|-.+++....+-++|..++.+++..+.
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9988999999999999999999999999999999876654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0042 Score=49.74 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=87.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh-h---------hhHHHHHHHHHHHhhh
Q 042942 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA-A---------FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~G~~ 82 (189)
+++...+.+..+..++..++..+...+.-++.-|+++.+..++.++..+.-.. . ++.+-.+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888888888888888888888887777778889988888777766543221 1 1112223344555666
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccc
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKI 131 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (189)
....+-+...+++|.+|+..-|+..++.....++|..++..++..+...
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~ 380 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL 380 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667778899999999999999999888998888888887665443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.046 Score=44.02 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhHHHhhhh---hcchhHHHHHHHHHHHHHHHhhhh------------------hhHHHHHHHHHHHhhh
Q 042942 24 SLYIAGLIASLFASSVTRA---FGRKASILVGGTAFLAGSALGGAA------------------FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~---~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~G~~ 82 (189)
...++..++....+.+.+| +||++.+.++..+..+..++.-.. +++...++.-+++|++
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~ 366 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFG 366 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhH
Confidence 3345566666777777654 799999999988888877665432 2355677788899999
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
-+........++.... +++|..+.+++-+-..++..++.+.
T Consensus 367 D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 367 DACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 5778888888777777777665544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.042 Score=44.29 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhhcch-------hHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHh
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRAFGRK-------ASILVGGTAFLAGSALGGAA----------FNIYMLIFGRVLLG 80 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G 80 (189)
..++.+...+..++.+++..++-.|.+++ .-+-+++.+...+.++.... .+.++++...++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 45666777777777888877777775443 22445556665555554432 24677888999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNY 126 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (189)
++.=...|....++....|++..+..++.+......|..++..++.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 9999999999999999999999999999999999998888877765
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.085 Score=42.27 Aligned_cols=120 Identities=17% Similarity=0.084 Sum_probs=90.1
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh------hh----hHHHHHHHHHHH
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA------AF----NIYMLIFGRVLL 79 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~l~ 79 (189)
..|+++..++.+-+.-.+..+.+.+...++.+|+|..|.=+++......+..+... .+ +...++.+-.+.
T Consensus 287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S 366 (432)
T PF06963_consen 287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS 366 (432)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence 34899999999999999999999999999999999988877776554443332221 11 334555555566
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
-+|.=.+.....-++.|..|+++||...+.-....++--++...++..+.
T Consensus 367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66666666777788999999999999999988888888777777755443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0023 Score=51.81 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=48.0
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHH-HHHHHHHHhhhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGT-AFLAGSALGGAA 66 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~-~~~~~~~~~~~~ 66 (189)
...+++|+++.+.+.+....-+..+++.|++|+++||+-+||.++++.. +.....++..+.
T Consensus 36 vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 36 VYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred HHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 3457899999999999999999999999999999999987766666544 444444555443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.007 Score=48.24 Aligned_cols=117 Identities=17% Similarity=0.088 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc-------hhHHHHHHHHHHHHH----HHhhhh-hhHHHHHHHHHHHh
Q 042942 13 FDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-------KASILVGGTAFLAGS----ALGGAA-FNIYMLIFGRVLLG 80 (189)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-------r~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~l~G 80 (189)
.+..+.-++..++..+..+|.+++|.++||+.| .+.-.+...+.+..+ ++.... .+...+....++.|
T Consensus 280 ~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g 359 (493)
T KOG1330|consen 280 FDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVG 359 (493)
T ss_pred CccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344455567788889999999999999999432 222222222222222 222222 22222233334445
Q ss_pred hhhh-hhhhhhhHHHhhcCCccccchhHHHHHH-HHHHHHHHHHHhhhhcc
Q 042942 81 VGIG-FANQSVPLYLSEMAPPKNRGAFNIGFQV-SVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 81 ~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~ 129 (189)
.... ..+.....+..|+.|+++|..+.++-.. ...+|..-+|.+-+++.
T Consensus 360 ~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGils 410 (493)
T KOG1330|consen 360 ETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILS 410 (493)
T ss_pred HHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHH
Confidence 4332 2344555778999999999999998544 44556677774544444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.035 Score=43.89 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCc
Q 042942 21 FTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPP 100 (189)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~ 100 (189)
+.-.-.+-..+..+.+.++.+|+..+.=+.....+.+++.++.+++++.+.-+++-.+.+++.|........+.. .+++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence 444445667777788889999886554456667788888888899899998888999999999888887777654 5553
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 101 KNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 101 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
...+.+..+.+.++++|...-..+.. . ..+.|..+.....+.
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~-~-g~s~~~tll~~~~lp 184 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGLTT-L-GLSPRTTLLIMLVLP 184 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHHHH-h-CcCHHHHHHHHHHHH
Confidence 24555666666667777665333332 1 134566666555444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.09 Score=41.36 Aligned_cols=118 Identities=16% Similarity=0.060 Sum_probs=71.6
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhh-----hhcchhHHHH-HHHHHHHHHHHhhh-----------hh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTR-----AFGRKASILV-GGTAFLAGSALGGA-----------AF 67 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~Grr~~~~~-~~~~~~~~~~~~~~-----------~~ 67 (189)
|.+.+.-+.|.++.+.+...+ .-.-..+.|.++.| |+||||.-++ +..+........+. .+
T Consensus 54 P~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p 131 (510)
T KOG3574|consen 54 PLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLP 131 (510)
T ss_pred HHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCc
Confidence 444455566665555543222 22345578889999 9999987443 22222222222221 12
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 68 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
+...+....++.-+..+.-....-.+.-.+..+++-|.+......+.+.|.+++..+
T Consensus 132 ~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 132 NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 333333345566666666666677888888889998888888777778887777555
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0089 Score=47.50 Aligned_cols=116 Identities=16% Similarity=0.048 Sum_probs=73.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcc-hhHHHHHHHHHHHHH-HHhhhh---hhHHHHHHHHHHHhhhhhh
Q 042942 11 CNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGR-KASILVGGTAFLAGS-ALGGAA---FNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~G~~~~~ 85 (189)
-|.++..+|++.....++.+++..+.|.+.||... |+++++......++. .+..+. ...+.++..-.+.|.+...
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG 375 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence 45566788999999999999999999999999754 555555555555543 122221 1223445556667888888
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHH-HHHHHHHHHhhh
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSV-GIGVLSDNLLNY 126 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~ 126 (189)
..|....+-.|..-|..-+...|+.+... ..+.....+.+.
T Consensus 376 ~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 376 YLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred CCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 88877777777765555555566544433 334444433343
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.36 Score=39.78 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=62.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHH---H-HHhh---hhhhH-HHHHHHHHHHhhh
Q 042942 11 CNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAG---S-ALGG---AAFNI-YMLIFGRVLLGVG 82 (189)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~---~-~~~~---~~~~~-~~~~~~~~l~G~~ 82 (189)
+|-+....+.+.++++.|..+|+.+.+.+.++.- ++...+-..+..++ . ++.. +.... ..++...++.++.
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~-~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAA-AGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788889999999999998888764322 22222221111111 1 1111 11111 1223344556777
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
.|...|....+..+... ++-++..|-.+....+|.++|.++..+
T Consensus 124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 78877776665554322 123455666666777777777776443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.9 Score=34.29 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=75.1
Q ss_pred CchhHHHHHHHHHH-HHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh--h-------h---------------
Q 042942 14 DSQLLTTFTSSLYI-AGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA--F-------N--------------- 68 (189)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~-------~--------------- 68 (189)
+++.+..+-....+ +..+...+...++++++|++++.+....+.....+.++. + +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45556666553333 445666788999999999998877666655555444431 1 0
Q ss_pred -------HHHHHHHHHHHhhhhhhh-hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 69 -------IYMLIFGRVLLGVGIGFA-NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 69 -------~~~~~~~~~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
.|......+..-+-.... ......+..|.++.++-.+..+++..+.++|.+++..+...+..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222222211222 22457889999999999999999999999999888888666555
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.63 Score=37.51 Aligned_cols=110 Identities=10% Similarity=0.005 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcch--hHHHH--HHHHHHHHHHHhh---------hhhhHHHHHHHHHHHhhhhhh
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGRK--ASILV--GGTAFLAGSALGG---------AAFNIYMLIFGRVLLGVGIGF 85 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~G~~~~~ 85 (189)
-....+++++-.+|..+..+.. .-++| ...+. .=+++....+++. +.++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3455666777777776554331 11222 22221 1222222222222 223556667778899999999
Q ss_pred hhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 86 ANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 86 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.......+..+..++++|..+..+..++..+|..+|..++..+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999998888899999999988888865543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.84 Score=36.22 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=72.5
Q ss_pred hHHHHHHH-HHHHHHHHHhhHHHhhhhhcchhHHHHHHH--HHHHHHHH------hhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 17 LLTTFTSS-LYIAGLIASLFASSVTRAFGRKASILVGGT--AFLAGSAL------GGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
..-.+..+ +++...+|.+.+.++-++ +||+..+...+ ++.-...+ ..+..+-+.++....+.|+..|-..
T Consensus 283 y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt 361 (406)
T KOG1479|consen 283 YALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT 361 (406)
T ss_pred hHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence 33445555 788888888777777654 34443333222 11111111 1223556677788888999998888
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhh
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNY 126 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 126 (189)
.....+..+-.|++++-.+..+...+...|...|..+++
T Consensus 362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888889999898887777788788888888777754
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.14 Score=43.22 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=43.1
Q ss_pred ccccccCCchhHHHHHHHHHH-HHHHHHhhHHHhhhhhc--chhHHHHHHHHHHHHHHH
Q 042942 7 ISNYCNFDSQLLTTFTSSLYI-AGLIASLFASSVTRAFG--RKASILVGGTAFLAGSAL 62 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~ 62 (189)
+++++|+++.+++++.....+ +.+++.+++|++.||++ .|+.+.++..+..++.++
T Consensus 357 l~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 357 LENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 345789999999999887765 67899999999999998 456666666666555433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.1 Score=31.68 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcc--hhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHhhhhhhhhhh
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGR--KASILVGGTAFLAGSALGGAA-------FNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Gr--r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
|.+.+.+++..++|+-+...+..|-.. ...+.+..++.++...+.... .+...-+++..+.-.+.|..+|.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 778888999999999888777665433 344555555444443332221 12333355666667788999999
Q ss_pred hhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 90 VPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
..-+=+++.|++.|++.+.++..-.++-..++-.. +....-..+-|..|-++.+...+..
T Consensus 365 imkmRsqyIPEearstimNfFRvPLnifvClvLyn---lh~~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN---LHVDAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee---cccccCccccchhhhhhHHHHHHHH
Confidence 99999999999999887776655444333222111 0000001245566666665555543
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.89 Score=34.98 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 042942 53 GTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE 129 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (189)
.+++.+......+.++++..++..+.-|+-.|..++...--+.+-.++++|-.+++.....-.+|..++.+++..+.
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 34444445566678899998899999999888888877766666677889999999999999999988888875443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=91.86 E-value=5.8 Score=32.04 Aligned_cols=127 Identities=12% Similarity=-0.071 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh------hh--h----hHH---HHHHHHHHHhhhhhhhhh
Q 042942 24 SLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG------AA--F----NIY---MLIFGRVLLGVGIGFANQ 88 (189)
Q Consensus 24 ~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~------~~--~----~~~---~~~~~~~l~G~~~~~~~~ 88 (189)
+..+..++.++..|...||..|.+++..+.+..-++..+.+ +. . +.+ .+++.-.+.|...-....
T Consensus 46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~ 125 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI 125 (432)
T ss_pred HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677778888899999998887777555544432221 11 1 011 122222222221111111
Q ss_pred hh-hHHHhhc----C--CccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 89 SV-PLYLSEM----A--PPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 89 ~~-~~~~~e~----~--~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.. .+.=.|| . +++.+.+.++...-.--+..+++|++.+.+.... +.+....+.+...++...
T Consensus 126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~---s~~~~~~~i~~~N~~S~~ 194 (432)
T PF06963_consen 126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA---SPVIAAIFIAGWNLASVF 194 (432)
T ss_pred hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHHHHHHHH
Confidence 11 1111233 2 3344455666666666678899999977665432 566655555555544443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.5 Score=35.88 Aligned_cols=97 Identities=13% Similarity=-0.006 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHhhhhhcch--hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 042942 17 LLTTFTSSLYIAGLIASLFASSVTRAFGRK--ASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYL 94 (189)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 94 (189)
.-|..-++..+..++..+..|++-.++.+- ..+-+..++.+...+++..++|.+..+++.++.+..+....+....-+
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i 378 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI 378 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888999999987666542 333333445555566777889999999999999999999888888888
Q ss_pred hhcCCccccchhHHHHHHH
Q 042942 95 SEMAPPKNRGAFNIGFQVS 113 (189)
Q Consensus 95 ~e~~~~~~r~~~~~~~~~~ 113 (189)
+.....+.-+...|+..+.
T Consensus 379 A~~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 379 ASSLSKELCALVFGINTFV 397 (511)
T ss_pred HHHhcccceEEEEecHHHH
Confidence 8877777667777765543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.6 Score=30.78 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHH----HHHHHHHHHHHhhh-h----hhHHHHHHHHHHHhhhhhhhh
Q 042942 18 LTTFTSSLYIAGLIASLFASSVTRA-FGRKASILV----GGTAFLAGSALGGA-A----FNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~----~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~G~~~~~~~ 87 (189)
......++..++.+|.+..|..... +-||+.+.. +.+...+..++... . .+...+++.-|+.|++.=+.+
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566677777888888888763 556665542 23333333333211 1 134567777777777654444
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~ 121 (189)
++...+-.| ++...+-+..-.+...+++|.++-
T Consensus 223 ~ViL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 223 GVILNLPHE-YKGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHHhcChhh-hcCCCcceehhHHHHHHHHHHHHH
Confidence 433322223 333333333333555666665443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.10 E-value=3.3 Score=33.15 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 042942 16 QLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVG--GTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLY 93 (189)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 93 (189)
..-|.+-++..+...++.+..|++..++.+..-+.++ .++.+...++++..++.+..+++.++.+..+....+....-
T Consensus 285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~q 364 (412)
T PF01770_consen 285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQ 364 (412)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777788888888999999996677664444443 44445555667778899999999998888887777777766
Q ss_pred HhhcCCccccchhHHHHHH
Q 042942 94 LSEMAPPKNRGAFNIGFQV 112 (189)
Q Consensus 94 ~~e~~~~~~r~~~~~~~~~ 112 (189)
++.-...+.-+...|+..+
T Consensus 365 IA~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 365 IAKNLSEERYALVFGINTF 383 (412)
T ss_pred HHHhccccceeeeeeeHHH
Confidence 7766666665665555433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.54 E-value=8.6 Score=31.56 Aligned_cols=117 Identities=10% Similarity=0.036 Sum_probs=79.1
Q ss_pred CchhHHHHHHHHHH-HHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh---------hh---------------
Q 042942 14 DSQLLTTFTSSLYI-AGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA---------FN--------------- 68 (189)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------- 68 (189)
+++.++++-+...+ +..+..++..++.+++.|++++.+.+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 45666777777766 667888899999999999999888777666666665542 01
Q ss_pred --------HHHHHHHHHHHhhhhhhh-hhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 69 --------IYMLIFGRVLLGVGIGFA-NQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 69 --------~~~~~~~~~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
.|..-...+..-+=.... .-.......|.+..++-.|..++++.+.+++..++..+...+..
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011112222222211222 22455778899999999999999999999999888887665554
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.5 Score=34.08 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=54.6
Q ss_pred HHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCC
Q 042942 26 YIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAP 99 (189)
Q Consensus 26 ~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~ 99 (189)
++.-+..+++.+.+..++|-|.++.++...+......- +-+.+..+...-...|++.+..+..--.|+++...
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 34455666777789999999999998887766554333 23677888888899999999888877677766553
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.75 E-value=2.9 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHH
Q 042942 22 TSSLYIAGLIASLFASSVTRAF-GRKASILVGGT 54 (189)
Q Consensus 22 ~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~ 54 (189)
.+.=+++..+.....||+.||| |.++.-++.++
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3445566777777889999996 66655444433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.2 Score=38.32 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHH--HHHHHHHHHHh----------hhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 21 FTSSLYIAGLIASLFASSVTRA-FGRKASILVG--GTAFLAGSALG----------GAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
...+++++-.+|....++.--+ -.+|+..... =+++....+++ ...++-+..++..++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4556778888888877764221 1234433321 12222212222 112344566777888999999988
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhh
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYG 127 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 127 (189)
.....+..+..++++|..+..+..++..+|..+|..++..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999888888888888888888777543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.4 Score=39.01 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=52.9
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPA 148 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 148 (189)
-++.|++.........++-+|...+++++.+.++++.....+..++|++....... .|.|+.+.+.....
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~---~g~~~v~~~~~~~~ 464 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL---SGPRPVWIILLCLL 464 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh---cCccHHHHHHHHHH
Confidence 33567777766777788899999999999999999999999999999997655433 25665555444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=84.69 E-value=0.29 Score=40.52 Aligned_cols=121 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred cccccccCCchhHHHHHHHHHH-HHHHHHhhHHHhhhhhc--chhHHHHHHHHHHHHHHHh---hh-----------hhh
Q 042942 6 NISNYCNFDSQLLTTFTSSLYI-AGLIASLFASSVTRAFG--RKASILVGGTAFLAGSALG---GA-----------AFN 68 (189)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~---~~-----------~~~ 68 (189)
.++.+|++++++++.+..+..+ +.++|.+++|++..|+. .|+.+.+..+...++.+.. .+ ...
T Consensus 331 ylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~ 410 (539)
T PF03137_consen 331 YLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVP 410 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCc
Confidence 4567899999999998866654 67889999999999873 4555555544444444331 01 000
Q ss_pred ----------------------------------------HHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHH
Q 042942 69 ----------------------------------------IYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNI 108 (189)
Q Consensus 69 ----------------------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~ 108 (189)
+..+++..++.-+..+...+......-...|+++|+.++|
T Consensus 411 y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlG 490 (539)
T PF03137_consen 411 YHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALG 490 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhh
Confidence 1122333333333333444444445556778888888888
Q ss_pred HHHHHHH-HHHHHHHHhhh
Q 042942 109 GFQVSVG-IGVLSDNLLNY 126 (189)
Q Consensus 109 ~~~~~~~-~g~~~~~~~~~ 126 (189)
+...... +|.+=+|++-+
T Consensus 491 v~~~~~rllg~IPgPIifG 509 (539)
T PF03137_consen 491 VQWLIIRLLGFIPGPIIFG 509 (539)
T ss_dssp -------------------
T ss_pred HHHHHHHhhcCcchHHHHh
Confidence 8665554 46666776633
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.03 E-value=7.9 Score=26.41 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHH
Q 042942 67 FNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSD 121 (189)
Q Consensus 67 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~ 121 (189)
+++..++...++.|++. ..+.+.+++--+++++-|..+|+-++--+++.+.-
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHH
Confidence 34455555555555443 23455666767888888999999888888776543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=83.11 E-value=4.5 Score=33.26 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=61.2
Q ss_pred cccccc--ccCCchhHHHHHHHHHHHHHHHHhhHHHhhh-----hhcchhHHHHH-HHHHHHHHHHhhhhh---------
Q 042942 5 TNISNY--CNFDSQLLTTFTSSLYIAGLIASLFASSVTR-----AFGRKASILVG-GTAFLAGSALGGAAF--------- 67 (189)
Q Consensus 5 p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~Grr~~~~~~-~~~~~~~~~~~~~~~--------- 67 (189)
|.+.++ -+.+.++.+.++-+.. - .-..++|.++.| |+||||.-++- -.+.++..+..+...
T Consensus 24 PflL~~~~~~~sy~q~~~fSla~~-P-fSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~ 101 (544)
T PF13000_consen 24 PFLLQSMAKKVSYSQQAIFSLASY-P-FSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSYNISQWLLFDGV 101 (544)
T ss_pred hhhhccccCCCChhHheeeeeeec-h-hHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHhccchhhccccc
Confidence 555555 5677777665432211 0 112345555544 79999986653 222222222222111
Q ss_pred -------------h--HHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 68 -------------N--IYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 68 -------------~--~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
+ ...+....+++-+..+.-..+.-.+.-.+.++++++.+......+.+.|.+++..+
T Consensus 102 ~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 102 DDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred chhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 0 11122233233333333334455677777888888888777777777777666554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.3 Score=34.74 Aligned_cols=108 Identities=7% Similarity=-0.040 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccc
Q 042942 23 SSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKN 102 (189)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~ 102 (189)
-+..=.+.+.-.+.-.+.|..--|+++++-.+.......+.-+.++.+.+=+.-+..|...+. ...-++++-+..++++
T Consensus 49 PvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~ 127 (433)
T KOG3810|consen 49 PVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEM 127 (433)
T ss_pred cchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHH
Confidence 344445566667777899988888888888888888888888888888887788888877644 4556788888899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcccc
Q 042942 103 RGAFNIGFQVSVGIGVLSDNLLNYGTEKI 131 (189)
Q Consensus 103 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (189)
+-+..+......-.|...+..++..+...
T Consensus 128 Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 128 YKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred HHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 99999988888888888888887766543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.28 E-value=3.9 Score=34.27 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 68 NIYMLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 68 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
|..+++.-.++.|++.........-+.-+-+|++.|+.+.+++....++|..++..+......
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999998888999999999999999999999999999888888654443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.08 E-value=6.2 Score=31.13 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcchh--HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHhh
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGRKA--SILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYLSE 96 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e 96 (189)
|..=++..+..+++.+..|.+.-.+.|.. .+.++.+..+-..+++..+++.|..+++.++....+....+....-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 33445666777889999999977776653 3444455555555666777888998888888888887777777777777
Q ss_pred cCCccccchhHHHHHHH
Q 042942 97 MAPPKNRGAFNIGFQVS 113 (189)
Q Consensus 97 ~~~~~~r~~~~~~~~~~ 113 (189)
-...+.-|...|+..+.
T Consensus 354 nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFV 370 (433)
T ss_pred hhhhhhheeeeehHHHH
Confidence 77777777776665443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.67 E-value=4.1 Score=33.10 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 19 TTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
.|-..++.+...+.+...-++.||+|-|+.+..+...+.++..+.+..++.+....-+-..|+-.+..
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~ 402 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL 402 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecch
Confidence 45556677778888999999999999777666666667777777776666666666666666443333
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.38 E-value=22 Score=29.53 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHh
Q 042942 71 MLIFGRVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLL 124 (189)
Q Consensus 71 ~~~~~~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 124 (189)
.+++..++..+.....++...++-+.+.+|..=|+.+.+.+...++|+---..+
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~ 460 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF 460 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence 344567777788888888899999999999999999999999999886444433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 189 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 189 | |||
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 4e-04 |
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 22 TSSLYIAGL-IASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLG 80
Y+ ++ LF ++ GR+ ILVG + F+ + + ++ +LI + G
Sbjct: 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99
Query: 81 VGIG 84
+G G
Sbjct: 100 MGTG 103
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 189 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.92 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.89 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.86 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.85 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.81 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.55 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.5 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.39 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.05 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.85 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=170.05 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=138.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh------------------hhhhHHHHHHH
Q 042942 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG------------------AAFNIYMLIFG 75 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 75 (189)
+..+.+++.+++.+|.++|++++|+++||+|||++++++.+++.++.++.+ +++++++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 345678899999999999999999999999999999999999999998887 46899999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-----CCcchHHHHHhhHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-----GGWGWRISLAMAAAPASI 150 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~ 150 (189)
|+++|++.|...+..+.+++|+.|+++|++..+..+.+..+|.++++.++....... +...||+.+....+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999988876554322 234788888877776666
Q ss_pred HHh------hcCCccccccchHHHHHHHHHH
Q 042942 151 LTI------ETKNLPIEQMDKLWGEQTVGRA 175 (189)
Q Consensus 151 ~~~------e~~~~~~~~~~~~~~~~~~~~~ 175 (189)
..+ |+|+|...+++.+++++..++.
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 554 8999988887777666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=156.51 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=132.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G 80 (189)
.|.+.+++|+++.+.+++.+++.+++.++.++.|+++||+|||++++++.++.+++.++. .++++++.++++|++.|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc-cccCC----------------------cch
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE-KINGG----------------------WGW 137 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----------------------~~w 137 (189)
++.+...+....++.|++|+++|++++++.+.+..+|..++|.++..+. ...+. .+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999987765 33221 019
Q ss_pred HHHHHhhHHHHHHHH
Q 042942 138 RISLAMAAAPASILT 152 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (189)
|+.|++.+++..+..
T Consensus 209 ~~~~~~~~~~~~~~~ 223 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVA 223 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877665555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=151.52 Aligned_cols=146 Identities=15% Similarity=0.264 Sum_probs=134.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.+++|.++++.+++.+.+.+++.+++++.|+++||+|||+++.++..+..++.++..+.++++.+++.|++.|++.+
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 103 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG 103 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+....++.|++|+++|+++++..+....+|..++|.++..+... .+||+.+.+.+++..+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776643 4899999988877766554
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-22 Score=156.18 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=130.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA----AFNIYMLIFGRVLL 79 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 79 (189)
.|.+.+++ .++.+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.++ +++++.++++|++.
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 36677888 99999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASIL 151 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~ 151 (189)
|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++..+... .+ ||+.|++.+++.++.
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILV 199 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765433 36 999888877665543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=147.41 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=128.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
++++|+++.+.+++.+++.+++.++++++|+++|| +|||+++.++.++..++.++.+++++++.++++|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34599999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 87 NQSVPLYLSEMAPPKN--RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
.+....++.|++|+++ |+++.+.++...++|..++|.++..+... .+||+.|++.++..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Confidence 9999999999999988 67778889999999999999998776643 489999988766555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-19 Score=140.35 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=127.7
Q ss_pred cccccc------CCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Q 042942 7 ISNYCN------FDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 78 (189)
+.+++| +++.+.+++.+++.+++.++.++.|+++||+ |||+++.++.++.+++.++.++++ +++.+++.|++
T Consensus 39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (524)
T 2xut_A 39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118 (524)
T ss_dssp HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345667 9999999999999999999999999999999 999999999999999999999888 99999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHH---HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIG---FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|++.+...+....++.|++|+++|++..+. .+.+.++|..++|.++..+... .+|++.|++.+++.++..+
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877666 8889999999999998766533 4899999888776655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=106.72 Aligned_cols=143 Identities=14% Similarity=0.054 Sum_probs=120.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASILVGGTAFL-AGSALGGAA--FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~~ 82 (189)
++.+|.++.+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999 99999888877776 666666655 3667777788889998
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHH-HHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGI-GVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+... .+|+..|++.+++.++..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999 999999997766543 3788888877766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=108.46 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=109.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 042942 15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYL 94 (189)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 94 (189)
....++..++..++..++.++.++++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777888889999999999999999999999888888877777777777777777778887777777778899
Q ss_pred hhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 95 SEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 95 ~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|.+|++.|+++.+. ++....+|..++|.+++.+... .++...|.+.+++.++..+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 999999999999998 5888889999999998766532 3677777776666554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=105.89 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=101.3
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH--HHh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF----NIYMLIFGRV--LLG 80 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--l~G 80 (189)
+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +....++..+ ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 303 VFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4445566666666777777888999999999999999999999999888887776654321 1122222222 222
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc---CCcchHHHHHhhHHHHHHHHh----
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN---GGWGWRISLAMAAAPASILTI---- 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~---- 153 (189)
++. ...+....+.+|.+|++.|+++.++......++..+++.+...+.... ...++.+.|++.+.++++..+
T Consensus 383 ~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 383 FAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 222 233566789999999999999999999888888888877644332110 011233344444444433322
Q ss_pred ---hcCCcccccc
Q 042942 154 ---ETKNLPIEQM 163 (189)
Q Consensus 154 ---e~~~~~~~~~ 163 (189)
||+.+.+|+-
T Consensus 462 ~~PETkg~tLeei 474 (491)
T 4gc0_A 462 FVPETKGKTLEEL 474 (491)
T ss_dssp HCCCCTTCCHHHH
T ss_pred eecCCCCCCHHHH
Confidence 8877766553
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=100.40 Aligned_cols=139 Identities=8% Similarity=-0.088 Sum_probs=110.7
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++.+|.++.+.+++.+...++..++.++.++++||+|||+.+.++.++..++.++..+.++...+.. .++.|++.+...
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 365 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQY 365 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999888888877777665444 477889999889
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASILT 152 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~ 152 (189)
+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.... + ++..|.+.++..++..
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---GNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---TSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHH
Confidence 99999999999976 788887766 55688899998877665443 4 6666665544444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-14 Score=110.35 Aligned_cols=141 Identities=10% Similarity=-0.015 Sum_probs=96.4
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHH---hhhhhhHH-HHHHHHHHHhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSAL---GGAAFNIY-MLIFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~G~~ 82 (189)
+++++|+++.+.+++.+++.+++.++++++|+++||+|||++++++..+.++.... ..+.+... .++..+++.+++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999988776553211 12222111 123445555555
Q ss_pred hhhhhhhhhHHHhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPP--KNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.+..++.......++.++ ++|+...+..+....+|..++|.++..+.. .+|+..|++.++..++.
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTH
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHH
Confidence 554444334444444432 355666777777778888888888776553 26899888776654433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=100.77 Aligned_cols=138 Identities=12% Similarity=-0.049 Sum_probs=105.9
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHHH
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASIL-----VGGTAFLAGSALGGAAF---------NIYMLIFG 75 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~ 75 (189)
..+.+....+++.+...++..++.++.+++.||+|||+... .+..+.+++.++..+.. +.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS 392 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence 34555556777788888899999999999999999986655 67777777776665533 56677778
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+...+... ++...|...+.++++.
T Consensus 393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVL 464 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHH
Confidence 88899999888888999999999999999999999999999999999997766532 3444555554444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-11 Score=90.22 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=101.0
Q ss_pred cccc-ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHH-HHHHHHH--hhh--hhhHHHHHHHHHH
Q 042942 5 TNIS-NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTA-FLAGSAL--GGA--AFNIYMLIFGRVL 78 (189)
Q Consensus 5 p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~~~~l 78 (189)
|.+. +++|.++.+.+++.+...++..++.++.+++.||++++ +..+..+ ...+..+ ... .++.+.+++..++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4443 44788999999999999999999999999999999873 3333333 2222222 122 2366667778888
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAA 145 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 145 (189)
.|++.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+... .++...+.+.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHHHH
Confidence 999999999999999999998 8999999999999999999888886655432 25666665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=82.39 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhh----hhhcc----hhHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHh
Q 042942 18 LTTFTSSLYIAGLIASLFASSVT----RAFGR----KASILVGGTAFLAGSALGGAA---------FNIYMLIFGRVLLG 80 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G 80 (189)
.+++.....++..+..++.+.+. ||.|+ ++.+.++.++.+++.++.++. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 34444444455566666666554 44443 356677888888877776653 25666777888999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
++.+...+....++.|..|+++|++++++.+....+|..++|.+...+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 189 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.87 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.58 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.38 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.3e-22 Score=156.48 Aligned_cols=146 Identities=17% Similarity=0.059 Sum_probs=125.5
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAA----FNIYMLIFGRVLLG 80 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G 80 (189)
|.++ ++|+|+++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.++. ++++.+++.|++.|
T Consensus 49 p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 127 (447)
T d1pw4a_ 49 PYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 127 (447)
T ss_dssp HHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Confidence 5454 589999999999999999999999999999999999999999999999998888765 36778999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
++.+...+....++.|++|+++|++++++.+.+..+|..+++.++....... .+||+.+++.+++..+..+
T Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 128 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999998876544332 2688777766655554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1e-14 Score=109.81 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=120.4
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQS 89 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 89 (189)
+.+.+....+...+...++..++..+.+++.||+|+|+.+.++..+.+++.+...+.++.+.+++..++.|++.+...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 34445566777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCccccchhHHHH-HHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 90 VPLYLSEMAPPKNRGAFNIGF-QVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 90 ~~~~~~e~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...++.|.+|++.|++..++. +....+|..++|.+.+.+.+. .|++..+++.+++.++..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~ 394 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999974 567789999999887766543 4788888877766655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.2e-14 Score=106.99 Aligned_cols=135 Identities=10% Similarity=-0.015 Sum_probs=95.3
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYML----IFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~G~~ 82 (189)
+++++|+|+++.+++.+++.+++.+++++.|+++||+||||+++++..+..++..+..+..+.... +..+++.+..
T Consensus 34 l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T d1pv7a_ 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999999999999999999998888887776554433 3444444444
Q ss_pred hhhhhhhhhHHHhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhH
Q 042942 83 IGFANQSVPLYLSEMAPP--KNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAA 145 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 145 (189)
.+...........+..++ +++....+........+..+++.++..+... +|+..+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~ 174 (417)
T d1pv7a_ 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGS 174 (417)
T ss_dssp GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHH
T ss_pred ccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchh
Confidence 444444333333333322 3345566677777788888888887766543 3444444333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=6.3e-12 Score=95.93 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=106.5
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHH---HHHHHHhh--hhhhHHHHHHHHHHHhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAF---LAGSALGG--AAFNIYMLIFGRVLLGV 81 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~l~G~ 81 (189)
+.+..+.+..+.++..+...++..++.++.|++.||++||+......... .++..+.. ...+.+...+..++.|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (447)
T d1pw4a_ 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355 (447)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999875443332222 22222222 23466777777788898
Q ss_pred hhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHH-HHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 82 GIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGI-GVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 82 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
+.+...+....+..|.+|++.|+++.++.+....+ |.+++|.+.+.+... .||+..+++.+...++..+
T Consensus 356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999998877766 567788876655533 4788777766555544433
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