Citrus Sinensis ID: 042973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEccccEEEccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHcccccccccccEEEcccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHHcccccccEEccccccEEEEEEcccccEEEEEEEEEEcHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mspyarvtdidecldkekyhcegkckntigsctcdcpigmygdgkvdcrgfHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKAtknydeshflgeggfgsvykgvlpdntqiavkkpkesdkIRINQEFQKEMGIVL
Flexible Loop (DISEMBL)
mspyarvtdidecldkekyhcegkckntigsctCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQiavkkpkesdkirinqefqkemgivl
Low Complexity Region (SEG)
MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHittivavigaviFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL
Disordered region (IsUnstruct)
******VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQI*************************
Disordered Region (DISOPRED)
MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIG**********GFHITTIVAVIGAVIFSVIVGILIFIGCIERR*****L*KWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK*************QKEMGIVL
Disordered Region (DISEMBL)
MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL
Disordered Region (DISPRO)
*SPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q9LMP1	732	Wall-associated receptor	yes	no	0.842	0.174	0.312	9e-12
Q9LMN8	741	Wall-associated receptor	no	no	0.875	0.179	0.286	3e-11
C0LGT1	613	Probable LRR receptor-lik	no	no	0.552	0.137	0.352	8e-11
Q39191	735	Wall-associated receptor	no	no	0.888	0.183	0.295	6e-10
O04086	625	Probable receptor-like pr	no	no	0.375	0.091	0.517	4e-09
Q9LMN7	733	Wall-associated receptor	no	no	0.815	0.169	0.266	1e-08
Q9LMN6	738	Wall-associated receptor	no	no	0.914	0.188	0.267	1e-08
C0LGX1	607	Probable LRR receptor-lik	no	no	0.5	0.125	0.355	3e-08
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.381	0.052	0.423	4e-08
C0LGN2	1020	Probable leucine-rich rep	no	no	0.598	0.089	0.343	4e-08

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 45/173 (26%)

Query: 9   DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG------KVDCRGFHITTIVAVI 60
           DI+EC+   +++C     C+NT GS  C+CP G   D       KV    F  T I   +
Sbjct: 278 DINECI-SSRHNCSEHSTCENTKGSFNCNCPSGYRKDSLNSCTRKVRPEYFRWTQIF--L 334

Query: 61  GAVI-FSVIVGILIFIGCIERR---------KQKNF---------------------LKK 89
           G  I FSVI   ++ I C++++         +QK F                     +K 
Sbjct: 335 GTTIGFSVI---MLGISCLQQKIKHRKNTELRQKFFEQNGGGMLIQRVSGAGPSNVDVKI 391

Query: 90  WCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQ 142
           +    + +AT  Y ES  LG+GG G+VYKG+LPDN+ +A+KK +  ++ ++ Q
Sbjct: 392 FTEKGMKEATNGYHESRILGQGGQGTVYKGILPDNSIVAIKKARLGNRSQVEQ 444

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 31/164 (18%)

Query: 9   DIDECLDKEKYHCEG--KCKNTIGSCTCDCPIGMYGDGKVDCR--GFHITTIVAVIGAVI 64
           DIDEC+  + ++C     C+N  G   C CP G   +  + C    +  T I  VI   +
Sbjct: 293 DIDECI-SDTHNCSDPKTCRNRDGGFDCKCPSGYDLNSSMSCTRPEYKRTRIFLVIIIGV 351

Query: 65  FSVIVGILIFIGCIERRK----QKNFLKKWCAAKLVK----------------------A 98
             +++  +      ++RK    ++ F ++     L++                      A
Sbjct: 352 LVLLLAAICIQHATKQRKYTKLRRQFFEQNGGGMLIQRLSGAGLSNIDFKIFTEEGMKEA 411

Query: 99  TKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQ 142
           T  YDES  LG+GG G+VYKG+LPDNT +A+KK + +D  +++Q
Sbjct: 412 TNGYDESRILGQGGQGTVYKGILPDNTIVAIKKARLADSRQVDQ 455

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 18/102 (17%)

Query: 68  IVGILIFIGC------------------IERRKQKNFLKKWCAAKLVKATKNYDESHFLG 109
           + GIL+F+ C                  ++RR     LK++   +L  AT N+ E + LG
Sbjct: 238 LFGILLFLFCKDRHKGYRRDVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLG 297

Query: 110 EGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           +GGFG VYKGVLPDNT++AVK+  + +    +  FQ+E+ ++
Sbjct: 298 QGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMI 339

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 48/183 (26%)

Query: 2   SPY--ARVTDIDECLDKEKYH---CEG--KCKNTIGSCTCDCPIGMYGDGK-VDCR--GF 51
           +PY  A   D++EC      H   C     C+N +G   C C  G   D   + C+   F
Sbjct: 273 NPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQSGYRLDTTTMSCKRKEF 332

Query: 52  HITTI--VAVIGAVIFSVIVGILIFIGCIERR---------KQKNF-------------- 86
             TTI  V  IG ++      IL+ + CI++R         +++ F              
Sbjct: 333 AWTTILLVTTIGFLV------ILLGVACIQQRMKHLKDTKLREQFFEQNGGGMLTQRLSG 386

Query: 87  -------LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR 139
                  +K +    + KAT  Y ES  LG+GG G+VYKG+LPDN+ +A+KK +  D  +
Sbjct: 387 AGPSNVDVKIFTEDGMKKATNGYAESRILGQGGQGTVYKGILPDNSIVAIKKARLGDSSQ 446

Query: 140 INQ 142
           + Q
Sbjct: 447 VEQ 449

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O04086|Y1105_ARATH Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 94  KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           +L KAT N+ + +F+G GGFG VYKGVLPD + IAVKK  ES+  + + EF+ E+ I+
Sbjct: 287 ELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESE-FQGDAEFRNEVEII 343

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 56/180 (31%)

Query: 9   DIDECLDKEKYHCE--GKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAV------- 59
           DI+EC  +  ++C     C+NT+GS  C CP G            + TT+  +       
Sbjct: 279 DINECTTR-IHNCSDTSTCENTLGSFHCQCPSG---------SDLNTTTMSCIDTPKEEP 328

Query: 60  --IG--AVIFSVIVGILIFIGCIERRKQK-----------NFLKKWCAAKLVK------- 97
             +G   V+    +G LI +  I   +QK            F ++     L++       
Sbjct: 329 KYLGWTTVLLGTTIGFLIILLTISYIQQKMRHRKNTELRQQFFEQNGGGMLIQRLSGAGP 388

Query: 98  ---------------ATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQ 142
                          AT  Y+ES  LG+GG G+VYKG+L DN+ +A+KK +  D+ ++ Q
Sbjct: 389 SNVDVKIFTEEGMKEATDGYNESRILGQGGQGTVYKGILQDNSIVAIKKARLGDRSQVEQ 448

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 44/183 (24%)

Query: 2   SPYAR--VTDIDECLDK---EKYHCEG--KCKNTIGSCTCDCPIGMYGDGKVDC-----R 49
           +PY +    DI+EC       K++C G   C+N +G   C+C      +   +       
Sbjct: 270 NPYLQNGCQDINECTTANPIHKHNCSGDSTCENKLGHFRCNCRSRYELNTTTNTCKPKGN 329

Query: 50  GFHITTIVAVIGAVIFSVIVGILIFIGCIERR---------KQKNF-------------- 86
             ++     V+G  I  ++  IL+ I CIE +         +Q+ F              
Sbjct: 330 PEYVEWTTIVLGTTIGFLV--ILLAISCIEHKMKNTKDTELRQQFFEQNGGGMLMQRLSG 387

Query: 87  -------LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR 139
                  +K +    + +AT  YDE+  LG+GG G+VYKG+LPDN+ +A+KK +  D  +
Sbjct: 388 AGPSNVDVKIFTEEGMKEATDGYDENRILGQGGQGTVYKGILPDNSIVAIKKARLGDNSQ 447

Query: 140 INQ 142
           + Q
Sbjct: 448 VEQ 450

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|C0LGX1|Y5524_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g65240 OS=Arabidopsis thaliana GN=At5g65240 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 49/76 (64%)

Query: 76  GCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES 135
           G ++RR     L+++   +L  AT  + E + LG+GGFG VYKG+L D T++AVK+  + 
Sbjct: 258 GEVDRRIAFGQLRRFAWRELQLATDEFSEKNVLGQGGFGKVYKGLLSDGTKVAVKRLTDF 317

Query: 136 DKIRINQEFQKEMGIV 151
           ++   ++ FQ+E+ ++
Sbjct: 318 ERPGGDEAFQREVEMI 333

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 93  AKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           A ++KAT N+ E   +G GG+G+VY+GVLPD  ++AVKK  + +     +EF+ EM ++
Sbjct: 805 ADILKATSNFSEERVVGRGGYGTVYRGVLPDGREVAVKK-LQREGTEAEKEFRAEMEVL 862

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 11/102 (10%)

Query: 60  IGAVIFSVIV--GILIFIGCIERRKQ--KNF------LKKWCAAKLVKATKNYDESHFLG 109
           I + +F V++  GIL + GC+  + Q  K+F      +  +   ++  AT N+D ++ +G
Sbjct: 620 IASTVFLVLLIGGILWWRGCLRPKSQMEKDFKNLDFQISSFSLRQIKVATDNFDPANKIG 679

Query: 110 EGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           EGGFG V+KG++ D T IAVK+     K + N+EF  E+ ++
Sbjct: 680 EGGFGPVHKGIMTDGTVIAVKQLSAKSK-QGNREFLNEIAMI 720

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
255573259	771	serine-threonine protein kinase, plant-t	0.940	0.185	0.561	4e-42
255573255	739	kinase, putative [Ricinus communis] gi|2	0.940	0.193	0.587	9e-42
255565901	457	BRASSINOSTEROID INSENSITIVE 1-associated	0.940	0.312	0.535	7e-41
224132156	667	predicted protein [Populus trichocarpa]	0.986	0.224	0.506	4e-39
224132160	667	predicted protein [Populus trichocarpa]	0.986	0.224	0.506	4e-39
224102957	615	predicted protein [Populus trichocarpa]	0.940	0.232	0.516	1e-37
224145581	584	predicted protein [Populus trichocarpa]	0.986	0.256	0.496	2e-35
359491931	668	PREDICTED: wall-associated receptor kina	0.940	0.214	0.516	1e-33
224132144	646	predicted protein [Populus trichocarpa]	0.907	0.213	0.490	7e-30
224102953	633	predicted protein [Populus trichocarpa]	0.868	0.208	0.483	7e-29

>gi|255573259|ref|XP_002527558.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533050|gb|EEF34810.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/155 (56%), Positives = 110/155 (70%), Gaps = 12/155 (7%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC D  KY C+G CKNT G+ TC CP+GM GDGKV CRGF IT +  V+GA IF+ I
Sbjct: 338 DIDECNDPLKYPCQGTCKNTFGNYTCSCPLGMRGDGKVGCRGFRITALATVVGAFIFAAI 397

Query: 69  VGILIFIGCIERRKQKNFLKK------------WCAAKLVKATKNYDESHFLGEGGFGSV 116
           +G+L+ I   + +KQKNFL+             +  A+L KAT  Y  S+FLGEGGFG V
Sbjct: 398 IGLLVVIIWKKHKKQKNFLENGGVLLKHQRVRIFKEAELAKATNYYTTSNFLGEGGFGCV 457

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKGVL D TQ+AVK+PK+ +K+++NQEFQKE+GIV
Sbjct: 458 YKGVLADGTQVAVKRPKDIEKMKMNQEFQKEIGIV 492

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573255|ref|XP_002527556.1| kinase, putative [Ricinus communis] gi|223533048|gb|EEF34808.1| kinase, putative [Ricinus communis]

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 111/155 (71%), Gaps = 12/155 (7%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC + EKY C+G CKNTIG  TC CP+GM GDGKV CRGFHIT I A+IG+++  +I
Sbjct: 308 DIDECQEPEKYKCDGTCKNTIGGYTCQCPLGMRGDGKVGCRGFHITNIAAIIGSILSVII 367

Query: 69  VGILIFIGCIERRKQKNFLKK------------WCAAKLVKATKNYDESHFLGEGGFGSV 116
           + +L+ I    RRK++NFL+             +  A+L KATKNYD S  LGEGGFG V
Sbjct: 368 IAVLVIIIYKRRRKERNFLENGGMLLKHQRVRIFSEAELAKATKNYDPSQLLGEGGFGYV 427

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKGVL DNTQIAVKKPK+ DK +I QE+Q E+GIV
Sbjct: 428 YKGVLADNTQIAVKKPKDIDKAQIKQEYQHEIGIV 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565901|ref|XP_002523939.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223536786|gb|EEF38426.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 107/155 (69%), Gaps = 12/155 (7%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC + EKY C G C+NT+G+ TC CP+G + D K +C+GF ITTI  + GA++F  I
Sbjct: 23  DIDECKEPEKYPCGGTCQNTVGNYTCRCPLGTHRDDKNNCQGFRITTIATIAGALVFVGI 82

Query: 69  VGILIFIGCIERRKQKNFLKK------------WCAAKLVKATKNYDESHFLGEGGFGSV 116
           +  L+ I    RRK+KNFL+                A+L KAT+NY+ S FLGEGGFGSV
Sbjct: 83  ISFLMLIIWKRRRKEKNFLENGGMLLKHQRVRILSEAELTKATRNYETSQFLGEGGFGSV 142

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKG+L D TQ+AVKKPK+ D+ +INQEFQKE+ IV
Sbjct: 143 YKGILADGTQVAVKKPKDLDRTQINQEFQKELAIV 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132156|ref|XP_002328199.1| predicted protein [Populus trichocarpa] gi|222837714|gb|EEE76079.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 112/164 (68%), Gaps = 14/164 (8%)

Query: 2   SPYAR--VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAV 59
           +PY +    DIDEC + E Y C+G CKNT+G+  C CP+GMYGDGK  C+G  I T++A 
Sbjct: 276 NPYLQEGCQDIDECKNPESYPCQGTCKNTMGNYKCRCPLGMYGDGKKGCQGLGIITLIAA 335

Query: 60  IGAVIFSVIVGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESHF 107
           IGA I  VI+ +L+++ C +R+K +NF            ++ +  A+L KATKNYD+   
Sbjct: 336 IGAAILLVIICVLLYMMCKKRKKDRNFRENGGMVLKHQRVRIFSEAELEKATKNYDDDQK 395

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           LGEGGFGSVY+GVL DN Q+AVKK K  DK ++N+EFQ EMG+V
Sbjct: 396 LGEGGFGSVYRGVLADNAQVAVKKFKGVDKAQMNEEFQNEMGVV 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132160|ref|XP_002328200.1| predicted protein [Populus trichocarpa] gi|222837715|gb|EEE76080.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 112/164 (68%), Gaps = 14/164 (8%)

Query: 2   SPYAR--VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAV 59
           +PY +    DIDEC + E Y C+G CKNT+G+  C CP+GMYGDGK  C+G  I T++A 
Sbjct: 276 NPYLQEGCQDIDECKNPESYPCQGTCKNTMGNYKCRCPLGMYGDGKKGCQGLGIITLIAA 335

Query: 60  IGAVIFSVIVGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESHF 107
           IGA I  VI+ +L+++ C +R+K +NF            ++ +  A+L KATKNYD+   
Sbjct: 336 IGAAILLVIICVLLYMMCEKRKKDRNFRENGGMVLKHQRVRIFSEAELEKATKNYDDDQK 395

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           LGEGGFGSVY+GVL DN Q+AVKK K  DK ++N+EFQ EMG+V
Sbjct: 396 LGEGGFGSVYRGVLADNAQVAVKKFKGVDKAQMNEEFQNEMGVV 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102957|ref|XP_002312869.1| predicted protein [Populus trichocarpa] gi|222849277|gb|EEE86824.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 108/155 (69%), Gaps = 12/155 (7%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC D +KY C GKC NTIG   C C +GM+GDGK+ C+GF ITTI+AV+GA++  VI
Sbjct: 182 DIDECKDPKKYTCHGKCHNTIGDYECKCSLGMHGDGKIGCQGFAITTIIAVVGAIVSLVI 241

Query: 69  VGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESHFLGEGGFGSV 116
           + +L+F+   +RRK KNF            ++ +  A+L KAT NYD+   +GEGGFGSV
Sbjct: 242 ICLLLFMILSKRRKDKNFRENGGTVLKHQRVRIFSEAELTKATNNYDDDKKIGEGGFGSV 301

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKG+L DNT +AVKK K  DK ++N++FQ E+ +V
Sbjct: 302 YKGILADNTVVAVKKSKGVDKAQMNEDFQHEICVV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145581|ref|XP_002325694.1| predicted protein [Populus trichocarpa] gi|222862569|gb|EEF00076.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/165 (49%), Positives = 106/165 (64%), Gaps = 15/165 (9%)

Query: 2   SPYAR--VTDIDECLDKEKYHCE-GKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVA 58
           +PY +    D DEC D  K  CE G C+N IG   C CP+G YGDGK  C+G  I TI+A
Sbjct: 141 NPYLQDGCQDKDECKDPGKNPCEEGTCENVIGDYKCRCPLGKYGDGKTGCKGPGIVTIIA 200

Query: 59  VIGAVIFSVIVGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESH 106
            +GA IF V++ +L+++ C +R+K+KNF            ++ +  A+LVKAT NY +  
Sbjct: 201 AVGASIFLVVICLLLYMICTKRKKEKNFQENGGKFLKNQRVRIFSEAELVKATNNYADDR 260

Query: 107 FLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
            LGEG FGSVYKGVL DNT +AVKK K  DK ++N EFQKEM IV
Sbjct: 261 KLGEGSFGSVYKGVLTDNTVVAVKKSKGVDKAQMNAEFQKEMSIV 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491931|ref|XP_002273813.2| PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/155 (51%), Positives = 106/155 (68%), Gaps = 12/155 (7%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DI+EC D + Y C+G CKNT G+ TC CP+GM+G+GKV C+GF +TT  AVIGAV+ +V+
Sbjct: 228 DINECEDPKTYTCQGTCKNTAGNYTCSCPLGMHGNGKVACQGFRVTTFAAVIGAVVVAVV 287

Query: 69  VGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESHFLGEGGFGSV 116
             ILIFI   +  + KNF            +K +  A+L KAT NYD S  LG GG G V
Sbjct: 288 ACILIFIEWKKLARHKNFKKNGGLLLKRQRIKLFTEAELKKATNNYDRSRLLGRGGSGHV 347

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKG+L D+ Q+AVKKP E+DKI+IN++FQ E+ +V
Sbjct: 348 YKGILADDVQVAVKKPVEADKIQINEQFQHEIDVV 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132144|ref|XP_002328196.1| predicted protein [Populus trichocarpa] gi|222837711|gb|EEE76076.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 97/155 (62%), Gaps = 17/155 (10%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC   E+Y CEGKCKNTIGS  C CP G Y + +  C+ F    I++V     F +I
Sbjct: 249 DIDECKYPERYPCEGKCKNTIGSYKCHCPFGKYANSENGCQRFGGIIIISV-----FLLI 303

Query: 69  VGILIFIGCIERRKQKNFLKK------------WCAAKLVKATKNYDESHFLGEGGFGSV 116
           +  L+++ C +RR+ KNF K             +  A+L KAT NY +   LGEGGFG V
Sbjct: 304 ICFLLYVICTKRRRDKNFRKNGGMVLKHQRVRIFREAELEKATNNYVDDQKLGEGGFGYV 363

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKGVL DNT +AVKK K  DK ++N+EFQKE+GIV
Sbjct: 364 YKGVLADNTLVAVKKFKGVDKDQLNEEFQKEIGIV 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102953|ref|XP_002312868.1| predicted protein [Populus trichocarpa] gi|222849276|gb|EEE86823.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 23/155 (14%)

Query: 9   DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVI 68
           DIDEC   E Y C GKC NTIG   C C +GM+GDGKV   GF        +GA++  VI
Sbjct: 263 DIDECKYPETYTCYGKCHNTIGDYECKCSLGMHGDGKV---GF--------VGAIVSLVI 311

Query: 69  VGILIFIGCIERRKQKNF------------LKKWCAAKLVKATKNYDESHFLGEGGFGSV 116
           + +L+F+   +RRK KNF            ++ +  A+L KAT NYD+   LGEGGFGSV
Sbjct: 312 ICLLLFMILSKRRKDKNFRENGGMVLKHQRVRIFSEAELTKATNNYDDDKKLGEGGFGSV 371

Query: 117 YKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
           YKGVL DNT +AVKK K  DK ++N++FQ E+ +V
Sbjct: 372 YKGVLADNTVVAVKKSKGVDKAQMNEDFQHEICVV 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2014897	741	WAK3 "wall associated kinase 3	0.302	0.062	0.543	3.8e-14
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.355	0.073	0.482	1.6e-13
TAIR|locus:2014912	732	WAK2 "wall-associated kinase 2	0.355	0.073	0.464	3.4e-13
TAIR|locus:2145407	613	AT5G10290 [Arabidopsis thalian	0.5	0.123	0.421	1.5e-12
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.355	0.073	0.464	6e-12
TAIR|locus:2014902	735	WAK1 "cell wall-associated kin	0.355	0.073	0.5	7.4e-12
TAIR|locus:2199628	219	AT1G22720 [Arabidopsis thalian	0.355	0.246	0.454	6.8e-11
TAIR|locus:2019843	769	WAKL10 "WALL ASSOCIATED KINASE	0.375	0.074	0.465	5e-10
TAIR|locus:2203718	1035	AT1G53440 [Arabidopsis thalian	0.375	0.055	0.465	1.6e-09
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.348	0.064	0.438	2.4e-09

TAIR|locus:2014897 WAK3 "wall associated kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQ 142
             +AT  YDES  LG+GG G+VYKG+LPDNT +A+KK + +D  +++Q
Sbjct:   410 EATNGYDESRILGQGGQGTVYKGILPDNTIVAIKKARLADSRQVDQ 455

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
             +AT  YDE+  LG+GG G+VYKG+LPDN+ +A+KK +  D  ++ Q F  E+ +VL
Sbjct:   405 EATDGYDENRILGQGGQGTVYKGILPDNSIVAIKKARLGDNSQVEQ-FINEV-LVL 458

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2014912 WAK2 "wall-associated kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
             +AT  Y ES  LG+GG G+VYKG+LPDN+ +A+KK +  ++ ++ Q F  E+ +VL
Sbjct:   399 EATNGYHESRILGQGGQGTVYKGILPDNSIVAIKKARLGNRSQVEQ-FINEV-LVL 452

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0009311 "oligosaccharide metabolic process" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009992 "cellular water homeostasis" evidence=IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2145407 AT5G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query:    76 GCIERRKQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES 135
             G ++RR     LK++   +L  AT N+ E + LG+GGFG VYKGVLPDNT++AVK+  + 
Sbjct:   264 GEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDF 323

Query:   136 DKIRINQEFQKEMGIV 151
             +    +  FQ+E+ ++
Sbjct:   324 ESPGGDAAFQREVEMI 339

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
             +AT  Y+ES  LG+GG G+VYKG+L DN+ +A+KK +  D+ ++ Q F  E+ +VL
Sbjct:   403 EATDGYNESRILGQGGQGTVYKGILQDNSIVAIKKARLGDRSQVEQ-FINEV-LVL 456

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014902 WAK1 "cell wall-associated kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
             KAT  Y ES  LG+GG G+VYKG+LPDN+ +A+KK +  D  ++ Q F  E+ +VL
Sbjct:   404 KATNGYAESRILGQGGQGTVYKGILPDNSIVAIKKARLGDSSQVEQ-FINEV-LVL 457

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007166 "cell surface receptor signaling pathway" evidence=IPI

GO:0005773 "vacuole" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009615 "response to virus" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2199628 AT1G22720 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query:    97 KATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
             +AT +YDES  LG+GG G VYKG+L DN  +A+KK +  D  ++ + F  E+ I+
Sbjct:   131 EATNSYDESRILGQGGQGKVYKGILSDNFIVAIKKARLGDSSQV-EHFINEVLIL 184

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019843 WAKL10 "WALL ASSOCIATED KINASE (WAK)-LIKE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
 Identities = 27/58 (46%), Positives = 40/58 (68%)

Query:    94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
             +L KAT+N+  +  LGEGG G+VYKG+L D   +AVKK K  D+ ++ +EF  E+ I+
Sbjct:   425 ELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKL-EEFINEVVIL 481

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2203718 AT1G53440 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query:    94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
             ++ +AT N+D  + +GEGGFG VYKGVL D   IAVK+     K + N+EF  E+G++
Sbjct:   659 QIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSK-QGNREFVTEIGMI 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
 Identities = 25/57 (43%), Positives = 38/57 (66%)

Query:    95 LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
             L  AT N+     LG+GGFGSVY+G LPD +++AVKK +   + +  +EF+ E+ I+
Sbjct:   488 LQSATNNFSVK--LGQGGFGSVYEGTLPDGSRLAVKKLEGIGQGK--KEFRAEVSII 540

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.66.211.1 hypothetical protein (667 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	8e-06
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	9e-06
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-05
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-05
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	2e-05
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	6e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	9e-05
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-04
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	4e-04
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	8e-04
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	0.001
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	0.001
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	0.003
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	0.003
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	0.004
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	0.004
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	0.004

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 40.3 bits (95), Expect = 8e-06
 Identities = 16/35 (45%), Positives = 17/35 (48%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGD 43
          DIDEC         G C NT+GS  C CP G  G 
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 43.6 bits (104), Expect = 9e-06
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG VYKG L        T++AVK  KE       +EF +E  I
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASI 54

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 108 LGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEM 148
           LGEG FG VYKG L       T++AVK  KE       ++F KE 
Sbjct: 3   LGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEA 47

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL---PDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG VYKG L    D  ++  AVK  KE    +  +EF +E  I
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARI 54

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGK 45
          DIDEC         G C NT+GS  C+CP G Y DG+
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCECPPG-YTDGR 36

Length = 39

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL---PDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG VYKG L       ++  AVK  KE    +  +EF +E  I
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARI 54

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
           +G+G FG VYKGVL  NT++AVK  + +    + ++F +E  I+ 
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILK 47

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEM 148
           LGEGGFG+VY         ++A+K  K+ D   + +E  +E+
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREI 42

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 6/46 (13%)

Query: 108 LGEGGFGSVYKG--VLPDN----TQIAVKKPKESDKIRINQEFQKE 147
           LGEG FG VYKG    P+     T +A+K  KE+ + ++ QEF++E
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQE 58

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V++G+  +  ++A+K  K  D ++  Q+FQKE+  
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQ-QDFQKEVQA 55

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           Y+    LGEG FG VY          +A+K  K+    +  +   +E+ I
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKI 50

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 107 FLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV 151
            LG+G FG V+KG L D T +AVK  KE     +  +F  E  I+
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARIL 46

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKG---VLPDNT--QIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V       L DNT  Q+AVK    S + +   +F++E+ I
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEI 59

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           LG G FG+VYK         +AVK   K S+K + +Q  ++E+ I
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRI 51

Length = 260

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           LGEG +GSVYK +       +A+K  P E D     QE  KE+ I
Sbjct: 11  LGEGSYGSVYKAIHKETGQVVAIKVVPVEED----LQEIIKEISI 51

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV 151
           LG+G FG VY+G   D       T++AVK   ES  +R   EF  E  ++
Sbjct: 14  LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVM 63

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVK--KPKESDKIRINQEFQKEMGI 150
           +Y     LGEG FG VY     D   +A+K    K   K +  + F +E+ I
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQI 50

Length = 384

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDK 137
            Y++   LGEG +  VYK         +A+KK K  ++
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGER 38

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 108 LGEGGFGSVYK----GVLP--DNTQIAVKKPKESDKIRINQEFQKE 147
           +G+G FG V++    G+LP    T +AVK  KE     +  +FQ+E
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQRE 58

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.41
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.05
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.0
KOG3653	534	consensus Transforming growth factor beta/activin	98.91
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	98.82
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	98.7
KOG2052	513	consensus Activin A type IB receptor, serine/threo	98.58
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	98.54
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.31
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	98.21
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	98.21
KOG0192	362	consensus Tyrosine kinase specific for activated (	98.07
KOG1219	4289	consensus Uncharacterized conserved protein, conta	98.05
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.03
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	98.02
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	98.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	97.96
KOG0595	429	consensus Serine/threonine-protein kinase involved	97.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	97.9
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	97.9
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	97.9
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.83
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	97.83
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	97.81
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	97.81
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.8
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	97.79
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.78
PRK09188	365	serine/threonine protein kinase; Provisional	97.78
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	97.77
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	97.69
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	97.69
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	97.69
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	97.68
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	97.67
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	97.66
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	97.65
PLN00034	353	mitogen-activated protein kinase kinase; Provision	97.64
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	97.58
KOG0201	467	consensus Serine/threonine protein kinase [Signal	97.58
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	97.57
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	97.56
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	97.56
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	97.55
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	97.54
PTZ00284	467	protein kinase; Provisional	97.54
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	97.53
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.52
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	97.52
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	97.52
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	97.52
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	97.51
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	97.51
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	97.5
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	97.49
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	97.49
PHA02988	283	hypothetical protein; Provisional	97.48
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	97.48
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	97.47
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	97.44
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	97.43
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.43
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	97.43
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	97.43
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.43
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	97.42
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	97.41
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	97.41
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	97.41
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	97.4
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	97.39
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	97.38
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	97.35
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	97.35
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	97.34
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	97.34
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	97.34
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	97.33
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	97.32
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	97.32
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	97.31
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	97.31
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	97.3
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	97.3
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	97.3
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	97.3
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	97.29
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	97.29
KOG0581	364	consensus Mitogen-activated protein kinase kinase	97.29
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	97.28
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	97.28
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	97.27
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	97.26
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	97.26
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	97.26
PTZ00283	496	serine/threonine protein kinase; Provisional	97.26
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	97.25
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	97.25
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	97.25
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	97.23
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	97.23
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	97.22
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	97.22
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	97.22
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	97.21
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	97.21
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	97.2
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	97.2
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	97.2
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	97.19
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	97.19
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	97.19
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	97.19
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	97.19
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	97.19
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	97.19
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	97.18
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	97.18
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	97.18
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	97.17
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	97.17
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	97.17
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	97.17
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	97.17
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	97.17
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	97.16
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	97.16
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	97.15
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	97.15
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	97.15
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	97.15
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	97.15
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	97.15
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	97.15
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	97.14
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	97.14
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	97.14
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	97.13
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	97.13
KOG0577	948	consensus Serine/threonine protein kinase [Signal	97.13
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	97.12
PTZ00263	329	protein kinase A catalytic subunit; Provisional	97.12
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	97.12
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	97.11
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	97.11
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	97.11
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	97.1
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	97.1
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	97.1
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	97.1
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	97.09
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	97.09
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	97.08
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	97.08
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	97.08
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	97.07
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	97.07
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	97.06
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	97.06
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	97.04
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	97.04
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	97.03
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	97.03
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.03
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	97.02
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	97.02
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	97.02
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	97.01
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	97.01
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	97.01
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	97.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	97.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	96.99
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	96.98
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	96.98
PTZ00036	440	glycogen synthase kinase; Provisional	96.98
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	96.98
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	96.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	96.97
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	96.97
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	96.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	96.96
KOG0198	313	consensus MEKK and related serine/threonine protei	96.95
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	96.95
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	96.94
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	96.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	96.92
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	96.92
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	96.92
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	96.91
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	96.91
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	96.91
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	96.91
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	96.91
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	96.9
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	96.9
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	96.89
KOG0575	592	consensus Polo-like serine/threonine protein kinas	96.88
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	96.88
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	96.87
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	96.87
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	96.86
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	96.85
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.85
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	96.84
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	96.84
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	96.83
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	96.83
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	96.82
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.82
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	96.82
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	96.82
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	96.82
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	96.81
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	96.8
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	96.8
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	96.8
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	96.79
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	96.79
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	96.78
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	96.78
KOG1214	1289	consensus Nidogen and related basement membrane pr	96.78
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	96.77
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	96.77
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	96.76
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	96.76
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	96.75
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	96.74
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	96.73
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	96.72
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	96.72
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.71
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	96.7
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	96.7
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	96.69
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	96.67
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	96.67
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	96.66
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	96.66
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	96.66
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	96.66
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	96.65
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	96.65
KOG1989	738	consensus ARK protein kinase family [Signal transd	96.65
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	96.64
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	96.64
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	96.63
smart00090	237	RIO RIO-like kinase.	96.63
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	96.63
PLN00009	294	cyclin-dependent kinase A; Provisional	96.62
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	96.61
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	96.61
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	96.57
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	96.57
KOG0661	538	consensus MAPK related serine/threonine protein ki	96.56
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	96.56
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	96.56
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	96.56
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	96.54
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	96.53
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	96.53
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	96.53
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	96.53
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	96.52
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	96.52
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	96.52
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	96.52
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	96.5
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	96.47
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	96.44
KOG0605	550	consensus NDR and related serine/threonine kinases	96.43
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	96.41
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.41
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	96.41
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	96.39
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	96.39
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	96.39
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	96.36
PHA03212	391	serine/threonine kinase US3; Provisional	96.35
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	96.33
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	96.32
PRK10345	210	hypothetical protein; Provisional	96.31
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	96.31
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	96.31
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	96.3
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	96.29
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	96.29
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	96.26
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	96.23
PTZ00024	335	cyclin-dependent protein kinase; Provisional	96.23
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	96.19
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	96.17
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	96.16
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	96.16
KOG0582	516	consensus Ste20-like serine/threonine protein kina	96.1
PHA03211	461	serine/threonine kinase US3; Provisional	96.1
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	96.09
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	96.09
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	96.07
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	96.05
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	96.02
cd00053	36	EGF Epidermal growth factor domain, found in epide	95.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	95.96
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	95.95
KOG0694	694	consensus Serine/threonine protein kinase [Signal	95.89
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	95.84
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	95.81
PHA02882	294	putative serine/threonine kinase; Provisional	95.76
COG0661	517	AarF Predicted unusual protein kinase [General fun	95.73
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	95.72
PHA03209	357	serine/threonine kinase US3; Provisional	95.7
KOG0611	668	consensus Predicted serine/threonine protein kinas	95.68
PTZ00266	1021	NIMA-related protein kinase; Provisional	95.65
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	95.64
KOG0598	357	consensus Ribosomal protein S6 kinase and related	95.62
PF12662	24	cEGF: Complement Clr-like EGF-like	95.46
PTZ00267	478	NIMA-related protein kinase; Provisional	95.43
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	95.37
KOG4260	350	consensus Uncharacterized conserved protein [Funct	95.28
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	95.14
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	95.09
PRK09605	535	bifunctional UGMP family protein/serine/threonine	95.07
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	95.0
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	94.99
smart00181	35	EGF Epidermal growth factor-like domain.	94.98
KOG0583	370	consensus Serine/threonine protein kinase [Signal	94.86
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	94.65
KOG1167	418	consensus Serine/threonine protein kinase of the C	94.59
KOG1027	903	consensus Serine/threonine protein kinase and endo	94.57
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	94.49
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	94.44
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	94.44
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	94.29
KOG4721	904	consensus Serine/threonine protein kinase, contain	94.27
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	93.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	93.92
KOG0607	463	consensus MAP kinase-interacting kinase and relate	93.89
PHA03210	501	serine/threonine kinase US3; Provisional	93.82
KOG4258	1025	consensus Insulin/growth factor receptor (contains	93.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	93.76
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	93.61
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	93.56
KOG1219	4289	consensus Uncharacterized conserved protein, conta	93.52
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	93.38
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	93.19
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	93.08
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	93.05
KOG0578	550	consensus p21-activated serine/threonine protein k	93.03
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	92.9
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	92.79
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	92.78
KOG0586	596	consensus Serine/threonine protein kinase [General	92.76
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	92.4
KOG0596	677	consensus Dual specificity; serine/threonine and t	92.25
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	92.24
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	92.22
PF15102	146	TMEM154: TMEM154 protein family	92.05
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	91.96
PHA03207	392	serine/threonine kinase US3; Provisional	91.92
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	91.52
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	91.37
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	91.36
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.35
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.31
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	91.25
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	90.86
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	90.85
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	90.77
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	90.7
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	90.46
PHA02887	126	EGF-like protein; Provisional	90.42
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	90.41
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	90.18
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	90.09
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	90.01
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	89.73
KOG0589	426	consensus Serine/threonine protein kinase [General	89.41
KOG1235	538	consensus Predicted unusual protein kinase [Genera	88.74
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	88.63
PTZ00046	358	rifin; Provisional	88.57
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	88.4
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	88.11
KOG1290	590	consensus Serine/threonine protein kinase [Signal	87.75
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	87.35
KOG0610	459	consensus Putative serine/threonine protein kinase	86.52
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	86.33
KOG1214	1289	consensus Nidogen and related basement membrane pr	85.05
KOG0584	632	consensus Serine/threonine protein kinase [General	84.89
KOG0576	829	consensus Mitogen-activated protein kinase kinase	84.73
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	84.26
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	84.23
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	83.93
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	83.0
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	82.07
KOG0696	683	consensus Serine/threonine protein kinase [Signal	81.84
KOG1152	772	consensus Signal transduction serine/threonine kin	81.67
KOG0690	516	consensus Serine/threonine protein kinase [Signal	81.06
PF06667	75	PspB: Phage shock protein B; InterPro: IPR009554 T	81.0
KOG4289	2531	consensus Cadherin EGF LAG seven-pass G-type recep	80.92
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	80.69

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.41  E-value=3.4e-13  Score=99.03  Aligned_cols=65  Identities=45%  Similarity=0.745  Sum_probs=57.8

Q ss_pred             hHhhhHHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           87 LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.|+++++..+|++|+..++||+|+||.||+|.++++..||||++......+ ..+|.+|+++|+
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls  126 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILS  126 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHh
Confidence            56699999999999999999999999999999999999999999997766542 277999999875

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.05  E-value=1e-09  Score=86.22  Aligned_cols=48  Identities=31%  Similarity=0.511  Sum_probs=38.2

Q ss_pred             cCeecccCCceeeeEEc-CCC----CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVL-PDN----TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~----~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ..+||+|+||+||||.| |.|    .+||+|.+.+........+|+.|+-.|+
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~ma  753 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMA  753 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHh
Confidence            45799999999999998 554    3799999977666544489999987664

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.00  E-value=2.9e-10  Score=88.59  Aligned_cols=65  Identities=22%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             hHhhhHHHHHHhhhCCC---------ccCeecccCCceeeeEEcC--C--CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           87 LKKWCAAKLVKATKNYD---------ESHFLGEGGFGSVYKGVLP--D--NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~---------~~~~ig~g~~g~Vy~g~~~--~--~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...++|++-..+...|.         .+++||.|.||+|++|.+.  .  ...||||.|+......++.+|+.|+.+|
T Consensus       607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM  684 (996)
T KOG0196|consen  607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM  684 (996)
T ss_pred             cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence            34566766544444332         2468999999999999982  2  4589999999887776669999999987

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=98.91  E-value=3.8e-09  Score=78.34  Aligned_cols=43  Identities=44%  Similarity=0.630  Sum_probs=34.0

Q ss_pred             ccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...++|+|.||.||||.+ +++.||||++.....    +.|.+|-.+.
T Consensus       214 l~eli~~Grfg~V~KaqL-~~~~VAVKifp~~~k----qs~~~Ek~Iy  256 (534)
T KOG3653|consen  214 LLELIGRGRFGCVWKAQL-DNRLVAVKIFPEQEK----QSFQNEKNIY  256 (534)
T ss_pred             hHHHhhcCccceeehhhc-cCceeEEEecCHHHH----HHHHhHHHHH
Confidence            346789999999999999 569999999966444    6677776553

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=98.82  E-value=2.1e-08  Score=76.49  Aligned_cols=48  Identities=27%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|.||+|.......+..||||+|+..+....+.+|.+|+++|+
T Consensus       543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLs  590 (807)
T KOG1094|consen  543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILS  590 (807)
T ss_pred             hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHh
Confidence            456999999999999997779999999998877666699999999885

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=3.7e-09  Score=82.82  Aligned_cols=52  Identities=27%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             CCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++...+.||+|+||+||+|+..+      .+.||||.|++.+..+.+.||.+|+++|.
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla  544 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLA  544 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHH
Confidence            44445679999999999998733      45799999999888866699999999873

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.58  E-value=4e-08  Score=72.61  Aligned_cols=41  Identities=29%  Similarity=0.573  Sum_probs=33.3

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      .+.||+|.||+||+|.| .|..||||++...+.    ..+-+|.++
T Consensus       216 ~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srdE----~SWfrEtEI  256 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRDE----RSWFRETEI  256 (513)
T ss_pred             EEEecCccccceeeccc-cCCceEEEEecccch----hhhhhHHHH
Confidence            45799999999999999 689999999966554    556666655

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=98.54  E-value=4.9e-08  Score=74.50  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=44.6

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .+.++|+..-+.+.....||+|.||+||+|.|-  ..||||+|+....  .+. +.|.+||..+
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh--GdVAVK~Lnv~~pt~~ql-qaFKnEVa~l  442 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH--GDVAVKLLNVDDPTPEQL-QAFKNEVAVL  442 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeecccc--cceEEEEEecCCCCHHHH-HHHHHHHHHH
Confidence            444566655555666788999999999999994  3699999965544  334 8999999865

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.37  E-value=2.1e-07  Score=47.12  Aligned_cols=34  Identities=47%  Similarity=0.977  Sum_probs=28.8

Q ss_pred             ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCC
Q 042973            9 DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      |++||.... ..|  ++.|.|..|+|.|.|++||...
T Consensus         1 DidEC~~~~-~~C~~~~~C~N~~Gsy~C~C~~Gy~~~   36 (42)
T PF07645_consen    1 DIDECAEGP-HNCPENGTCVNTEGSYSCSCPPGYELN   36 (42)
T ss_dssp             ESSTTTTTS-SSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred             CccccCCCC-CcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence            689998754 567  6899999999999999999843

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.31  E-value=5.2e-06  Score=68.49  Aligned_cols=37  Identities=24%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD  136 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~  136 (152)
                      ..+...++||+|+||.||+|.. .++..||||+++...
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~  727 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN  727 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc
Confidence            3466678999999999999987 578899999996544

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.21  E-value=1.5e-06  Score=70.78  Aligned_cols=51  Identities=33%  Similarity=0.473  Sum_probs=41.6

Q ss_pred             CCccCeecccCCceeeeEEcCC--C----CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD--N----TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~--~----~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ....+.||+|.||.||+|.+.+  +    ..||||+|+...+.++..+|++|..+|+
T Consensus       694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~  750 (1025)
T KOG1095|consen  694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMS  750 (1025)
T ss_pred             eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHh
Confidence            3345679999999999999843  2    3499999988877777799999999885

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=98.21  E-value=8.3e-07  Score=67.13  Aligned_cols=65  Identities=34%  Similarity=0.441  Sum_probs=48.9

Q ss_pred             hHhhhHHHHHHhhhCCCccCeecccCCceeeeEEcCC--C---CEEEEEecCCc---chhHHHHHHHHHHhhhC
Q 042973           87 LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPD--N---TQIAVKKPKES---DKIRINQEFQKEMGIVL  152 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~--~---~~vavK~l~~~---~~~~~~~~f~~E~~~ls  152 (152)
                      ...+....|+...++......||+|+||+||+|.+..  +   ..||||..+..   ...+. .+|++|+++|.
T Consensus       144 ~~PI~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~-~e~m~EArvMr  216 (474)
T KOG0194|consen  144 KRPIPRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQI-KEFMKEARVMR  216 (474)
T ss_pred             cccccccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHH-HHHHHHHHHHH
Confidence            4456666777777777778899999999999999833  2   23899999752   23334 89999999873

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=98.07  E-value=3.9e-06  Score=61.97  Aligned_cols=47  Identities=34%  Similarity=0.566  Sum_probs=36.7

Q ss_pred             cCeecccCCceeeeEEcCCCCE-EEEEecCCcchhHH-HHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQ-IAVKKPKESDKIRI-NQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~-vavK~l~~~~~~~~-~~~f~~E~~~ls  152 (152)
                      .+.+|+|+||+||+|.| .|.. ||||.+........ .++|.+|+.+|+
T Consensus        46 ~~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~   94 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKW-RGTDVVAVKIISDPDFDDESRKAFRREASLLS   94 (362)
T ss_pred             hhhcccCCceeEEEEEe-CCceeEEEEEecchhcChHHHHHHHHHHHHHH
Confidence            45589999999999999 4566 99999976543322 379999998874

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=98.05  E-value=7e-06  Score=70.87  Aligned_cols=35  Identities=40%  Similarity=0.864  Sum_probs=27.8

Q ss_pred             Cc--ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VT--DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~--~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+  ++++|.   ..+|  +|+|.|..|+|+|.|..|+.+..
T Consensus      3937 Ce~~Gi~eCs---~n~C~~gg~C~n~~gsf~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3937 CEARGISECS---KNVCGTGGQCINIPGSFHCNCTPGILGRT 3975 (4289)
T ss_pred             eecccccccc---cccccCCceeeccCCceEeccChhHhccc
Confidence            66  366775   3467  88999999999999999988755

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.03  E-value=7.2e-06  Score=63.09  Aligned_cols=50  Identities=20%  Similarity=0.401  Sum_probs=36.4

Q ss_pred             hhhCCCccCeecccCCceeeeEEc-----------------CCCCEEEEEecCCcchhHHHHHHHHHH
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL-----------------PDNTQIAVKKPKESDKIRINQEFQKEM  148 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~-----------------~~~~~vavK~l~~~~~~~~~~~f~~E~  148 (152)
                      ..++|...+.||+|+||.||+|.+                 .++..||||+++....... ++|.+|.
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~-~~fl~e~  209 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVR-QDFLKTG  209 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhH-HHHHhhh
Confidence            456788889999999999999964                 2356799999965443333 5566543

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=98.02  E-value=8.2e-06  Score=57.36  Aligned_cols=57  Identities=25%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |++.+++++.....||+|+||.||+|... ++..||+|.+........ +.|.+|+.++
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~-~~~~~e~~~l   59 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYV-QPLHEEIALH   59 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHH-HHHHHHHHHH
Confidence            45667788888889999999999999864 567899999876655444 6788888765

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=98.00  E-value=6.2e-06  Score=64.73  Aligned_cols=46  Identities=33%  Similarity=0.577  Sum_probs=37.6

Q ss_pred             CeecccCCceeeeEEc--CCCC--EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVL--PDNT--QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~--~~~~--~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++||+|.||.|++|.|  ++|.  .||||.|+.......-.+|++|+.+|
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M  165 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHM  165 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHH
Confidence            4689999999999999  3344  68999998876664338999999887

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=97.96  E-value=1.4e-06  Score=65.36  Aligned_cols=46  Identities=35%  Similarity=0.488  Sum_probs=38.6

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|.||+||.|.|.....||+|.++..+...  ++|.+|+.+|.
T Consensus       211 ~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~--~~f~~Ea~iMk  256 (468)
T KOG0197|consen  211 IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSP--EAFLREAQIMK  256 (468)
T ss_pred             HHHhcCCccceEEEEEEcCCCcccceEEeccccCh--hHHHHHHHHHH
Confidence            46799999999999999766699999998764433  78999999873

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.96  E-value=1.1e-05  Score=59.36  Aligned_cols=51  Identities=29%  Similarity=0.479  Sum_probs=38.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc--chhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES--DKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~ls  152 (152)
                      +|.....||+|+|+.||+|+. .++..||||.+...  +.... +....|+.+|+
T Consensus        11 ~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~-e~L~~Ei~iLk   64 (429)
T KOG0595|consen   11 DYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLV-ELLLSEIKILK   64 (429)
T ss_pred             cceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHH-HHHHHHHHHHH
Confidence            455556699999999999987 44789999999554  33333 66778887763

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=97.90  E-value=8.7e-06  Score=59.30  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=38.5

Q ss_pred             hhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||++..      ..+..||+|.++..........|.+|+.+|
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   64 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKIL   64 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHH
Confidence            34555567899999999999974      234679999997644433336788888765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=97.90  E-value=1.4e-05  Score=59.36  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             hhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||++.+      ..+..||||.++........+.|.+|+.+|
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il   92 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVL   92 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHH
Confidence            34566678899999999999974      235589999997544333336788898765

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.90  E-value=7.3e-06  Score=63.75  Aligned_cols=58  Identities=34%  Similarity=0.490  Sum_probs=46.8

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++|+-...++.-.+.||-|.||.||.|.|.. ...||||.|++....-  ++|+.|+.+|
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMev--eEFLkEAAvM  317 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAVM  317 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhH--HHHHHHHHHH
Confidence            35666666667778899999999999999944 5689999998765543  8999999887

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.83  E-value=3.2e-05  Score=54.44  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEcC----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++...+.||+|+||.||+|.+.    .+..||+|.++..........|.+|+.+|
T Consensus         6 ~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l   60 (266)
T cd05064           6 SIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTL   60 (266)
T ss_pred             HeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            3455678999999999999862    35689999997654433336788998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=97.83  E-value=3.2e-05  Score=55.87  Aligned_cols=51  Identities=29%  Similarity=0.601  Sum_probs=37.6

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||+|.+. ++.    .||+|.++........++|.+|+.+|
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   63 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM   63 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHH
Confidence            4666788999999999999873 333    38999997554433337788888765

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=97.81  E-value=2.7e-05  Score=57.01  Aligned_cols=53  Identities=25%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             hhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||++..      ..+..||||.++..........+.+|+.+|
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   64 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL   64 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHH
Confidence            34455578899999999999973      346789999997544333226678887765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=97.81  E-value=4.4e-05  Score=53.58  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=39.2

Q ss_pred             hCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||+|.+..    ...||+|.++.........+|.+|+.++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l   59 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIM   59 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHH
Confidence            346667899999999999998843    3579999997654443337899898765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.80  E-value=2.6e-05  Score=54.57  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=38.6

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++...++..+|+|.+.......  .+|.+|+.+|
T Consensus         7 ~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~--~~~~~E~~~l   55 (260)
T cd05067           7 TLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSP--EAFLAEANLM   55 (260)
T ss_pred             HceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcH--HHHHHHHHHH
Confidence            344467899999999999999888999999997544332  6788888765

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=97.79  E-value=3e-05  Score=58.15  Aligned_cols=56  Identities=25%  Similarity=0.323  Sum_probs=40.7

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ....+.+...+.||+|+||.||+|+...      +..||||+++........+.|.+|+.+|
T Consensus        33 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l   94 (400)
T cd05105          33 EFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIM   94 (400)
T ss_pred             eccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHH
Confidence            3344556667889999999999998521      2469999997654444337899999876

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.78  E-value=5.1e-05  Score=54.43  Aligned_cols=51  Identities=27%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             CCCccCeecccCCceeeeEEcCC-----------------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-----------------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-----------------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+...+.||+|+||.||++.+++                 +..||+|.++.........+|.+|+.+|
T Consensus         6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   73 (304)
T cd05096           6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKIL   73 (304)
T ss_pred             hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence            34446789999999999997632                 2369999997654433337899998776

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.78  E-value=4.6e-05  Score=56.39  Aligned_cols=53  Identities=19%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             hhCCCccCeecccCCceeeeEEcC--CCCEEEEEecCCcc----hhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP--DNTQIAVKKPKESD----KIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~--~~~~vavK~l~~~~----~~~~~~~f~~E~~~l  151 (152)
                      ...|...+.||+|+||+||++...  +++.+|||++....    .......|.+|+++|
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL   75 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRAL   75 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHH
Confidence            355777889999999999999873  46778999875321    122226789999876

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=97.77  E-value=2.7e-05  Score=58.43  Aligned_cols=57  Identities=25%  Similarity=0.320  Sum_probs=40.8

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +..+.+++...+.||+|+||.||++.+.+      +..||+|+++........+.|.+|+.+|
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l   94 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIM   94 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHH
Confidence            33344455557789999999999998632      3579999997654433336788898776

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=97.69  E-value=5.1e-05  Score=53.04  Aligned_cols=51  Identities=29%  Similarity=0.444  Sum_probs=39.5

Q ss_pred             hhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||++...++..+|+|.++......  .+|.+|+.++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~--~~~~~e~~~l   55 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSP--EAFLQEAQIM   55 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCH--HHHHHHHHHH
Confidence            34566678899999999999998777889999997543322  6788887765

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=97.69  E-value=5.2e-05  Score=56.29  Aligned_cols=56  Identities=25%  Similarity=0.319  Sum_probs=40.2

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ....++|...+.||+|+||.||++..      .++..||+|.++..........+.+|+.+|
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il   95 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKIL   95 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHH
Confidence            33444566678899999999999874      234579999997654443336788888766

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=97.69  E-value=4.6e-05  Score=53.33  Aligned_cols=50  Identities=30%  Similarity=0.441  Sum_probs=39.0

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|++|.||++...++..||+|.++..... . ++|.+|+.+|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~-~-~~~~~e~~~l   55 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMD-P-KDFLAEAQIM   55 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCccc-H-HHHHHHHHHH
Confidence            445556889999999999999877788999999754432 2 6788888765

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=97.68  E-value=6.8e-05  Score=53.04  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=39.8

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...++||+|+||.||+|...+     +..|++|+++..........+.+|+.+|
T Consensus         6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l   62 (280)
T cd05043           6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLL   62 (280)
T ss_pred             hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            455667899999999999999855     6789999997654444337788887665

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=97.67  E-value=3.5e-05  Score=53.83  Aligned_cols=52  Identities=31%  Similarity=0.576  Sum_probs=40.4

Q ss_pred             hhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+|...+.||+|+||.||++...++..+|+|.++....... .++.+|+.+|
T Consensus         5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   56 (261)
T cd05148           5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQ-QDFQKEVQAL   56 (261)
T ss_pred             HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhH-HHHHHHHHHH
Confidence            344555678999999999999998889999999976655333 6788887654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=97.66  E-value=6e-05  Score=52.95  Aligned_cols=47  Identities=36%  Similarity=0.545  Sum_probs=36.9

Q ss_pred             cCeecccCCceeeeEEcC-----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||.|.||.||+|.+.     .+..|+||.++........++|.+|+..|
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l   55 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQIL   55 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccc
Confidence            467999999999999995     25689999997654443338899998765

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=97.65  E-value=3.6e-05  Score=59.95  Aligned_cols=50  Identities=36%  Similarity=0.553  Sum_probs=39.2

Q ss_pred             CCccCeecccCCceeeeEEcCC---C--CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD---N--TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~---~--~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...++||+|.||.||+|++.+   |  ..||||+-+.....+..+.|+.|+.+|
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iM  445 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIM  445 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHH
Confidence            3445679999999999999833   2  358999998766655558999999877

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=97.64  E-value=7.6e-05  Score=54.82  Aligned_cols=47  Identities=23%  Similarity=0.371  Sum_probs=36.3

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++.. .++..||+|.+...........|.+|+++|
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l  126 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEIL  126 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHH
Confidence            45799999999999986 458899999996544333337788888776

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=97.58  E-value=8.1e-05  Score=45.97  Aligned_cols=37  Identities=24%  Similarity=0.492  Sum_probs=27.4

Q ss_pred             cccccccCCCCCCC-CccceeCC--CCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTI--GSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~--g~~~C~C~~g~~~~~   44 (152)
                      .++..|+.....-| ||.|....  ..+.|.|..||.|..
T Consensus        40 ~~i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeR   79 (139)
T PHA03099         40 PAIRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIR   79 (139)
T ss_pred             cccccCChhhCCEeECCEEEeeccCCCceeECCCCccccc
Confidence            35666765444457 88998764  678899999999876

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.58  E-value=7.9e-05  Score=55.44  Aligned_cols=51  Identities=24%  Similarity=0.455  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|.||.||||.- ..+..||+|.+.......+-++..+|+.+|
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~L   65 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVL   65 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHH
Confidence            345557899999999999986 236789999996544433325666666655

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=97.57  E-value=0.0001  Score=52.50  Aligned_cols=54  Identities=33%  Similarity=0.511  Sum_probs=38.2

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++.|...+.||+|+||.||+|...      .+..||+|.++.........+|.+|+.+|
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l   63 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVM   63 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHH
Confidence            3445666788999999999999753      24579999986554333336688887654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=97.56  E-value=9.5e-05  Score=52.20  Aligned_cols=50  Identities=30%  Similarity=0.455  Sum_probs=38.0

Q ss_pred             CCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++...+      +..||+|.++........++|.+|+.+|
T Consensus         7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   62 (280)
T cd05049           7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELL   62 (280)
T ss_pred             hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHH
Confidence            4445789999999999998633      4689999997655543337899998765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=97.56  E-value=8.9e-05  Score=51.86  Aligned_cols=48  Identities=33%  Similarity=0.464  Sum_probs=37.4

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+.||+|+||.||++..+++..+|+|.++..... . ++|.+|+.+|
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~-~-~~~~~E~~~l   55 (260)
T cd05070           8 LQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMS-P-ESFLEEAQIM   55 (260)
T ss_pred             hhhhheeccccCceEEEEEecCCceeEEEEecCCCCC-H-HHHHHHHHHH
Confidence            3335679999999999999888889999999754332 2 6788888765

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.55  E-value=0.00017  Score=51.13  Aligned_cols=49  Identities=31%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             CCccCeecccCCceeeeEEcC-----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.....||+|+||.||++.+.     ++..||+|.++....... +.|.+|+.+|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~e~~~l   59 (284)
T cd05081           6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHL-RDFEREIEIL   59 (284)
T ss_pred             ceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHH-HHHHHHHHHH
Confidence            444567999999999999752     467899999976655544 7888898765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=97.54  E-value=0.00011  Score=51.96  Aligned_cols=54  Identities=33%  Similarity=0.572  Sum_probs=39.2

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+++|...+.||+|+||.||+|...      .+..||+|+++.........+|.+|+.++
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l   63 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM   63 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            4456777789999999999998752      24579999986544333336788888765

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00284 protein kinase; Provisional

Probab=97.54  E-value=8.5e-05  Score=56.72  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +...+..|...+.||+|+||.||++.. ..+..||||+++..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~  165 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNV  165 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecc
Confidence            333455676677899999999999986 34778999999653

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=97.53  E-value=9.4e-05  Score=54.11  Aligned_cols=53  Identities=25%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             hhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++...      .+..||+|+++........+.+.+|+.++
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~   64 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKIL   64 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHH
Confidence            344555788999999999999752      24689999997544333225677777654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.52  E-value=0.00012  Score=51.02  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=36.9

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.+.++..+|+|.++..... . .+|.+|+.+|
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~-~-~~~~~e~~~l   53 (256)
T cd05114           6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMS-E-EDFIEEAKVM   53 (256)
T ss_pred             cEEeeEecCCcCceEEEEEeccCceEEEEecccCCcc-H-HHHHHHHHHH
Confidence            4445679999999999999987789999998644322 2 6788888765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=97.52  E-value=0.00018  Score=51.03  Aligned_cols=50  Identities=32%  Similarity=0.456  Sum_probs=36.8

Q ss_pred             CCccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|.+     ..+..+|+|.++.........+|.+|+.+|
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l   61 (283)
T cd05090           7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLM   61 (283)
T ss_pred             ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHH
Confidence            44457899999999999985     345789999997544433336788888765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=97.52  E-value=0.00011  Score=51.37  Aligned_cols=50  Identities=26%  Similarity=0.456  Sum_probs=38.4

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.+...+.||+|+||.||++...++..+|+|.++.... .. +.|.+|+.+|
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~-~~-~~~~~e~~~l   55 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-SV-EAFLAEANVM   55 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCChh-HH-HHHHHHHHHH
Confidence            34555778999999999999987778899998865432 22 6788888765

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=5.9e-05  Score=52.17  Aligned_cols=52  Identities=25%  Similarity=0.430  Sum_probs=38.5

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|.||.||.|..+ ++-.||+|.+....  ..+..+++.+|+++-
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIq   76 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQ   76 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEee
Confidence            45666889999999999999874 46689999994322  222337888888764

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=97.51  E-value=9.1e-05  Score=51.99  Aligned_cols=48  Identities=27%  Similarity=0.420  Sum_probs=36.9

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |.....||+|+||.||++...+...||+|.++..... . .+|.+|+.++
T Consensus         8 ~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~-~-~~~~~E~~~l   55 (262)
T cd05071           8 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-P-EAFLQEAQVM   55 (262)
T ss_pred             eeEeeecCCCCCCcEEEEEecCCceEEEEecccCccC-H-HHHHHHHHHH
Confidence            4456789999999999999877778999999753332 2 6788888765

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=97.51  E-value=0.00016  Score=51.88  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=34.6

Q ss_pred             CeecccCCceeeeEEcCC-CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      -.+|+|+||.|||.+-.+ |+.||||++.+... ...++--++|+++|
T Consensus         8 gkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmL   55 (396)
T KOG0593|consen    8 GKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRML   55 (396)
T ss_pred             hccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHH
Confidence            468999999999998744 89999999965443 33346667777665

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=97.50  E-value=0.00012  Score=51.16  Aligned_cols=49  Identities=31%  Similarity=0.490  Sum_probs=37.9

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||+|...++..||+|.+...... . +.|.+|+.++
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~-~-~~~~~e~~~l   55 (261)
T cd05072           7 SIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS-V-QAFLEEANLM   55 (261)
T ss_pred             HeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchh-H-HHHHHHHHHH
Confidence            34456789999999999999888889999998654332 2 6788887665

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=97.49  E-value=0.0002  Score=50.69  Aligned_cols=51  Identities=33%  Similarity=0.640  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||+|.+ +++.    .||+|.++.........++.+|+.++
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l   63 (279)
T cd05109           8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVM   63 (279)
T ss_pred             heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence            455567899999999999986 3444    48999997554443336788887654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=97.49  E-value=0.0001  Score=56.52  Aligned_cols=46  Identities=28%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      +++||+|.||+||-|.- ..|+.||||.+....  ..++ ....+|+.+|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqe-sqlR~EVaIL  617 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQE-SQLRNEVAIL  617 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchH-HHHHHHHHHH
Confidence            57899999999999976 458999999995543  2233 7889999876

>PHA02988 hypothetical protein; Provisional

Probab=97.48  E-value=0.00019  Score=51.10  Aligned_cols=47  Identities=21%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhH--HHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR--INQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~--~~~~f~~E~~~ls  152 (152)
                      ...+++|+++.||+|.+ +|..||||.++......  ..+.|.+|+.+|+
T Consensus        25 ~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~   73 (283)
T PHA02988         25 SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLR   73 (283)
T ss_pred             CeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHH
Confidence            36789999999999999 78999999997543322  1267889987763

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=97.48  E-value=0.00011  Score=51.56  Aligned_cols=47  Identities=32%  Similarity=0.464  Sum_probs=33.5

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .+.+|+|.||.||+|.- ..|+.||||+++..... ..+..-++|+..|
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~L   55 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLL   55 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHH
Confidence            46789999999999974 45889999999654332 1124556666554

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=97.47  E-value=0.00017  Score=51.28  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||+|.++.....  .....+.+|+.+|
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il   54 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRIL   54 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHH
Confidence            34457899999999999986 46889999998543221  1125678888765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=97.44  E-value=0.00019  Score=51.46  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=37.5

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||+|.++..........+.+|+.+|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l   57 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLL   57 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHH
Confidence            34555678999999999999874 57899999986543322224567777665

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=97.43  E-value=0.00029  Score=49.47  Aligned_cols=52  Identities=27%  Similarity=0.523  Sum_probs=38.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-C---CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-N---TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.... +   ..+|+|.++........++|.+|++++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l   60 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIM   60 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            356667899999999999998742 2   379999997553333337788888765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=6.5e-05  Score=62.10  Aligned_cols=53  Identities=28%  Similarity=0.463  Sum_probs=39.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+|.+-.+||+|+||.|||.+- -||+..|||++.............+|+.+|+
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LA  532 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLA  532 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHh
Confidence            4555566899999999999962 2799999999976653333356777887764

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=97.43  E-value=6.5e-05  Score=52.92  Aligned_cols=46  Identities=24%  Similarity=0.363  Sum_probs=36.7

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      ...||.|+||+|+|-.. +.|..+|||+++......+.+.|+.|.++
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~  115 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDT  115 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHH
Confidence            34689999999999876 67899999999877664444778888754

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=97.43  E-value=0.00024  Score=50.47  Aligned_cols=52  Identities=31%  Similarity=0.534  Sum_probs=38.7

Q ss_pred             hCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|.....||+|+||.||++..+      .+..+|+|.++.........+|.+|+.++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l   62 (288)
T cd05050           5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM   62 (288)
T ss_pred             HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            45666778999999999999853      35689999997654433337788888765

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.43  E-value=0.00025  Score=34.72  Aligned_cols=31  Identities=52%  Similarity=1.118  Sum_probs=24.8

Q ss_pred             ccccccCCCCCCC--CccceeCCCCceeeCCCCCc
Q 042973            9 DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMY   41 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~   41 (152)
                      ++++|...  .+|  +++|.+..++|.|.|+.|+.
T Consensus         1 d~~~C~~~--~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        1 DIDECASG--NPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             CcccCcCC--CCcCCCCEeECCCCCeEeECCCCCc
Confidence            35778642  467  55999999999999999998

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=97.42  E-value=0.00019  Score=51.18  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++..........+.+|+.+|
T Consensus         6 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   57 (288)
T cd07871           6 TYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLL   57 (288)
T ss_pred             cceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHH
Confidence            3455678999999999999863 57899999986543322225677787665

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=97.41  E-value=0.00021  Score=50.52  Aligned_cols=53  Identities=32%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             hhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++|...+.||+|+||.||++.+.+      +..||+|.+..........+|.+|+.++
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l   63 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIM   63 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3456667889999999999998843      4678999987554433336789887665

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=97.41  E-value=0.00023  Score=49.51  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=36.9

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+.||+|+||.||++.+.++..+|+|.++......  .+|.+|+.++
T Consensus         6 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~--~~~~~e~~~l   53 (256)
T cd05112           6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSE--EDFIEEAQVM   53 (256)
T ss_pred             eEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCH--HHHHHHHHHH
Confidence            34457899999999999998778899999986543322  6788887765

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=97.41  E-value=0.00031  Score=48.94  Aligned_cols=48  Identities=27%  Similarity=0.426  Sum_probs=38.0

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .+..||+|.++.... .. +.|.+|+.++
T Consensus         7 ~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~-~~~~~e~~~l   54 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AA-QAFLAEASVM   54 (256)
T ss_pred             hccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HH-HHHHHHHHHH
Confidence            455567899999999999998 578999999976554 23 6788888665

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=97.40  E-value=0.00038  Score=51.51  Aligned_cols=49  Identities=20%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||+|++....  .... ..+.+|+++|
T Consensus         2 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~~E~~~l   53 (372)
T cd07853           2 VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSC-KRVFRELKML   53 (372)
T ss_pred             CcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHH-HHHHHHHHHH
Confidence            45567899999999999985 468899999986432  2222 5678888765

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=97.39  E-value=0.00031  Score=49.09  Aligned_cols=51  Identities=27%  Similarity=0.447  Sum_probs=38.0

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..+|+|.++..  ........+.+|++++
T Consensus         3 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l   56 (267)
T cd08224           3 NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLL   56 (267)
T ss_pred             ceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHH
Confidence            4566788999999999999985 6889999988532  2222226788888765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=97.38  E-value=0.00015  Score=50.92  Aligned_cols=52  Identities=21%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++..|...+.||+|+||.||+|... .+..+|+|.+...... . .++.+|+.+|
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~-~-~~~~~e~~~l   56 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE-E-EEIKQEINML   56 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCcc-H-HHHHHHHHHH
Confidence            4445555678999999999999874 4778999998644322 2 5666776554

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=97.35  E-value=0.00024  Score=49.75  Aligned_cols=48  Identities=29%  Similarity=0.458  Sum_probs=36.8

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.....||+|+||.||++...++..+|+|.++..... . +.|.+|+.++
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~-~-~~~~~E~~~l   55 (260)
T cd05069           8 LRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMM-P-EAFLQEAQIM   55 (260)
T ss_pred             eeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCcc-H-HHHHHHHHHH
Confidence            4445689999999999999877778999998654332 2 6788888765

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=97.35  E-value=0.00022  Score=51.29  Aligned_cols=50  Identities=22%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..||+|.++..........+.+|+.++
T Consensus         8 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   58 (309)
T cd07872           8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLL   58 (309)
T ss_pred             eEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHH
Confidence            445678999999999999864 46789999986543322225677777665

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=97.34  E-value=0.00046  Score=48.17  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||.|+||.||++.. .++..+|+|.++........+++.+|+..|
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l   53 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAM   53 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHH
Confidence            345567899999999999986 457789999986443222227788888765

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=97.34  E-value=0.00047  Score=48.84  Aligned_cols=50  Identities=24%  Similarity=0.337  Sum_probs=36.7

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.+..........+|.+|+.+|
T Consensus         3 ~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l   53 (279)
T cd06619           3 IQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEIL   53 (279)
T ss_pred             chheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHH
Confidence            33456899999999999975 457899999985443322226788888765

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=97.34  E-value=0.00028  Score=52.48  Aligned_cols=50  Identities=22%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |.....||+|+||.||++.. ..+..+|+|.++....  ......|.+|+.+|
T Consensus         3 f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il   55 (381)
T cd05626           3 FVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDIL   55 (381)
T ss_pred             ceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHH
Confidence            44567899999999999976 4578999999964321  11125688888765

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=97.33  E-value=0.00039  Score=48.76  Aligned_cols=50  Identities=28%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++.....||+|+||.||+|.. .++..||+|.++....... ..+.+|+.++
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~-~~~~~e~~~l   60 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDF-SLIQQEIFMV   60 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchH-HHHHHHHHHH
Confidence            345567899999999999986 5678999999865443333 5567777654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.32  E-value=0.00027  Score=52.01  Aligned_cols=51  Identities=22%  Similarity=0.316  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. ..+..||||.++....  ......+.+|+.+|
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il   55 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDIL   55 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            455567899999999999987 3578999999964321  11115577787765

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=97.32  E-value=0.00048  Score=48.68  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      +|...+.||+|+||.||++... +|..||+|.++.........++..|+.
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~   51 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLD   51 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHH
Confidence            3555678999999999999874 588999999865432222245555554

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=97.31  E-value=0.00023  Score=55.80  Aligned_cols=37  Identities=35%  Similarity=0.583  Sum_probs=30.8

Q ss_pred             hhhCCCccCeecccCCceeeeEEcCC-----CCEEEEEecCC
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLPD-----NTQIAVKKPKE  134 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~~-----~~~vavK~l~~  134 (152)
                      ..++|...+.||+|+||.||+|...+     +..||+|+++.
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~  171 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE  171 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence            45677778899999999999999844     57899999864

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=97.31  E-value=0.00026  Score=50.27  Aligned_cols=47  Identities=26%  Similarity=0.426  Sum_probs=35.2

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...||+|+||.||++.. ..+..+|+|.++..........|.+|+.++
T Consensus         9 ~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l   56 (288)
T cd06616           9 LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVV   56 (288)
T ss_pred             HHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHH
Confidence            45789999999999986 347899999986543333336788887654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=97.30  E-value=0.00053  Score=50.26  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=44.9

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ....++...+++|...+.||+|+||.||++.. .++..||+|+++..... ...+.+.+|+.++
T Consensus         7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l   70 (345)
T cd07877           7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL   70 (345)
T ss_pred             hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHH
Confidence            34456666778888888999999999999975 56889999998653221 1125677777654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=97.30  E-value=0.00046  Score=50.26  Aligned_cols=52  Identities=21%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|.....||+|+||.||++... .+..+|+|.++..........|.+|+.+|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l   57 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL   57 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHH
Confidence            45555678999999999999874 47789999987543333336788898776

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=97.30  E-value=0.00025  Score=50.24  Aligned_cols=47  Identities=34%  Similarity=0.499  Sum_probs=34.7

Q ss_pred             cCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||+|...+      +..||+|+++........+.|.+|+.++
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~   62 (283)
T cd05091          10 MEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMR   62 (283)
T ss_pred             HHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            4568999999999998632      4689999997554433336788887664

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=97.30  E-value=0.0004  Score=50.61  Aligned_cols=52  Identities=25%  Similarity=0.488  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++..........+.+|+.++
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   57 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKIL   57 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHH
Confidence            4566678899999999999975 458899999986433322225677777654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=97.29  E-value=0.00059  Score=47.79  Aligned_cols=51  Identities=25%  Similarity=0.476  Sum_probs=37.2

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++...  .......|.+|++++
T Consensus         3 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l   56 (267)
T cd08228           3 NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLL   56 (267)
T ss_pred             ceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHH
Confidence            455567899999999999986 467899999875322  222226788888765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=97.29  E-value=0.00057  Score=48.32  Aligned_cols=49  Identities=22%  Similarity=0.421  Sum_probs=35.8

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|.. .++..+|+|.+...........|.+|+.++
T Consensus         7 ~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l   56 (277)
T cd06641           7 TKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVL   56 (277)
T ss_pred             hhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHH
Confidence            3356799999999999986 457899999986443333336788887665

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=97.29  E-value=0.00069  Score=49.44  Aligned_cols=47  Identities=26%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|..|+|||... +.+..+|.|++........+++..+|++++
T Consensus        84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il  131 (364)
T KOG0581|consen   84 LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEIL  131 (364)
T ss_pred             hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHH
Confidence            46799999999999987 557889999996665555558899999876

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=97.28  E-value=0.00036  Score=48.80  Aligned_cols=46  Identities=30%  Similarity=0.354  Sum_probs=35.8

Q ss_pred             ccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ....||+|+||.||.+.+.++..+|+|.++..... . .+|.+|+.++
T Consensus         8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~-~-~~~~~e~~~l   53 (256)
T cd05113           8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-E-DEFIEEAKVM   53 (256)
T ss_pred             EeeEecCcccceEEEEEecCCCcEEEEEcCCCccc-H-HHHHHHHHHH
Confidence            35679999999999999877778999998754332 2 6788888765

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=97.28  E-value=0.0005  Score=50.16  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=38.8

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... .+..+|+|.++..........|.+|+.+|
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l   57 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL   57 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHH
Confidence            45556678999999999999874 47789999886543333336788888765

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=97.27  E-value=0.00048  Score=48.71  Aligned_cols=50  Identities=40%  Similarity=0.632  Sum_probs=36.6

Q ss_pred             CCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|....      ...||+|.++.........+|.+|+.+|
T Consensus         7 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l   62 (283)
T cd05048           7 VRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELM   62 (283)
T ss_pred             cchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHH
Confidence            4445789999999999998633      2479999997654443336788888765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=97.26  E-value=0.00024  Score=50.38  Aligned_cols=59  Identities=20%  Similarity=0.365  Sum_probs=42.5

Q ss_pred             hHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           91 CAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        91 ~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++.+..+.++|.....||+|+||.||++.. ..+..+|+|.++......  .++.+|+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~--~~~~~e~~~l   68 (286)
T cd06638           9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDID--EEIEAEYNIL   68 (286)
T ss_pred             EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchH--HHHHHHHHHH
Confidence            3455666777887788999999999999977 457889999886533222  5566666543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=97.26  E-value=0.00046  Score=49.12  Aligned_cols=48  Identities=23%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||+||++.. .++..+|+|.++.....  .....+.+|+.+|
T Consensus         4 ~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il   54 (285)
T cd05632           4 QYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQIL   54 (285)
T ss_pred             EEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHH
Confidence            346799999999999987 45789999998543221  1114577787765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=97.26  E-value=0.00019  Score=53.20  Aligned_cols=52  Identities=23%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             hCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+....++-+|.||.||+|.|++      .+.|-||+++...++-+..-|+.|..+|
T Consensus       284 ~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~ll  341 (563)
T KOG1024|consen  284 CRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLL  341 (563)
T ss_pred             hheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            344445567899999999997744      3457888887766655446777776543

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.26  E-value=0.00034  Score=53.97  Aligned_cols=56  Identities=25%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ......|...+.||+|+||.||++.. .++..||||.++.... ......+.+|+..|
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l   85 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCL   85 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence            34445677778999999999999975 5688999999854322 22225677777654

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=97.25  E-value=0.00039  Score=48.53  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|.||.||++.+.++..+|+|.++......  .+|.+|+.++
T Consensus         6 ~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~--~~~~~e~~~l   53 (256)
T cd05059           6 LTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSE--DDFIEEAKVM   53 (256)
T ss_pred             cchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCH--HHHHHHHHHH
Confidence            33457799999999999998777789999986543322  5788887665

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=97.25  E-value=0.00049  Score=52.34  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcch
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK  137 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~  137 (152)
                      .+.|+.|++|.||+|++.+|+.||||..+....
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~  154 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIE  154 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcH
Confidence            357999999999999999999999999976543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=97.25  E-value=0.00064  Score=47.69  Aligned_cols=48  Identities=35%  Similarity=0.463  Sum_probs=34.2

Q ss_pred             ccCeecccCCceeeeEEcCC----CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||+|.+..    +..||+|.++.... ......|.+|++.|
T Consensus         3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l   55 (273)
T cd05035           3 LGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACM   55 (273)
T ss_pred             cccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHH
Confidence            35789999999999998732    35799999864322 12226788887765

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=97.23  E-value=0.00032  Score=49.90  Aligned_cols=53  Identities=23%  Similarity=0.365  Sum_probs=37.7

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.+|...+.||+|+||.||++.. .++..+|+|.++..........+.+|+.+|
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l   57 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLL   57 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHH
Confidence            34566667899999999999976 458899999986543322224566776554

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.00033  Score=51.01  Aligned_cols=36  Identities=31%  Similarity=0.719  Sum_probs=28.7

Q ss_pred             CCccCeecccCCceeeeEEcCC-CCEEEEEecCCcch
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK  137 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~  137 (152)
                      +...+++|.|+||.||+|.+.. +..||||+......
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r   62 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR   62 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC
Confidence            4456789999999999999843 68999999855443

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=97.22  E-value=0.00066  Score=48.87  Aligned_cols=51  Identities=24%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. ..+..+|+|.++.........++.+|+++|
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l   53 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVL   53 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            355567899999999999986 347788999886543333336788888765

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.00019  Score=54.48  Aligned_cols=50  Identities=26%  Similarity=0.454  Sum_probs=35.9

Q ss_pred             CCccCeecccCCceeeeEE-cCCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|.||.|||+. +..|..||+|+++-... ........+|+.+|
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~IL  170 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKIL  170 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHH
Confidence            3334578999999999997 46688999999965442 22225567888776

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=97.22  E-value=0.00034  Score=49.65  Aligned_cols=47  Identities=30%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||+||++.. +++..+|+|.+...........|.+|++++
T Consensus        10 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l   57 (284)
T cd06620          10 ISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIM   57 (284)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHH
Confidence            46789999999999987 457889999886544333337888888765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=97.21  E-value=0.0005  Score=48.91  Aligned_cols=57  Identities=25%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +....+.|...+.||+|+||.||++...+      ...+|+|.++.........++.+|+.+|
T Consensus         7 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l   69 (293)
T cd05053           7 WELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMM   69 (293)
T ss_pred             cccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            33344556667889999999999998632      3579999987543333226788888655

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=97.21  E-value=0.00068  Score=47.60  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=36.0

Q ss_pred             CCccCeecccCCceeeeEEcC----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|...    .+..+|+|.++..........|.+|+.+|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l   59 (267)
T cd05066           6 IKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIM   59 (267)
T ss_pred             eEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            444678999999999999862    23379999997544333336888888765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=97.20  E-value=0.0009  Score=46.85  Aligned_cols=49  Identities=27%  Similarity=0.510  Sum_probs=35.6

Q ss_pred             CccCeecccCCceeeeEEcCCCCEEEEEecCCcch-----hHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-----IRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-----~~~~~~f~~E~~~l  151 (152)
                      ...+.||.|.||.||+|..+++..+|+|.++....     ......|.+|+++|
T Consensus         3 ~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l   56 (265)
T cd06631           3 TKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLL   56 (265)
T ss_pred             cccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHH
Confidence            34578999999999999988889999998854321     11114577787665

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=97.20  E-value=0.0004  Score=49.37  Aligned_cols=51  Identities=24%  Similarity=0.377  Sum_probs=36.7

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|.....||+|++|.||++... ++..||+|.++..........+.+|+.+|
T Consensus         6 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l   57 (291)
T cd07844           6 TYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLL   57 (291)
T ss_pred             ceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHH
Confidence            4555678999999999999874 57899999986543322224566777665

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=97.20  E-value=0.001  Score=46.16  Aligned_cols=47  Identities=43%  Similarity=0.655  Sum_probs=35.9

Q ss_pred             cCeecccCCceeeeEEcCC-----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||.|+||.||++...+     +..||+|.++........+.|.+|+..|
T Consensus         4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   55 (258)
T smart00219        4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIM   55 (258)
T ss_pred             cceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHH
Confidence            4678999999999999854     3789999997655432227888887765

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=97.19  E-value=0.00069  Score=48.04  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++... .+..+|+|.++..........|.+|+.++
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l   53 (286)
T cd06622           6 LDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDIL   53 (286)
T ss_pred             hhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHH
Confidence            467899999999999884 58899999886542222226788887665

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=97.19  E-value=0.0006  Score=48.69  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++....  ....+.+.+|+.+|
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l   55 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVL   55 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHH
Confidence            3445678999999999999874 578999999854321  11225677887765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.19  E-value=0.00048  Score=54.49  Aligned_cols=58  Identities=29%  Similarity=0.448  Sum_probs=43.6

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcC----C----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLP----D----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~----~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|+...+++...+.+|+|.||.|++|.+.    .    ...||||+++......+.++|..|+.+|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m  355 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVL  355 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHH
Confidence            34555555555568999999999999862    1    3579999998766655558999999876

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=97.19  E-value=0.00077  Score=47.36  Aligned_cols=46  Identities=35%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             cCeecccCCceeeeEEcC----CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP----DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++.+.    .+..||+|.++...  .... +++.+|+.+|
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~-~~~~~E~~~l   55 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDI-EEFLREAACM   55 (273)
T ss_pred             hhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHH-HHHHHHHHHH
Confidence            567999999999999863    25789999986432  2222 6788888765

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=97.19  E-value=0.00015  Score=56.83  Aligned_cols=48  Identities=29%  Similarity=0.536  Sum_probs=36.9

Q ss_pred             ccCeecccCCceeeeEE-cCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||+|+ -..|+.||||..+........+...+|+++|
T Consensus        17 ~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Eieil   65 (732)
T KOG4250|consen   17 MDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEIL   65 (732)
T ss_pred             ehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHH
Confidence            35679999999999998 4569999999997755433336677777765

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=97.19  E-value=0.00048  Score=48.99  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      +.++++..++++|...+.||+|.||.||++.. .++..+|+|.+.......  .++.+|+.+
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~--~~~~~e~~~   71 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVD--EEIEAEYNI   71 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHH--HHHHHHHHH
Confidence            55667777888888888999999999999987 457899999986543222  445555544

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=97.19  E-value=0.00052  Score=48.33  Aligned_cols=51  Identities=31%  Similarity=0.547  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++....      +..||+|.+..........+|.+|+.+|
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l   63 (277)
T cd05032           7 KITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVM   63 (277)
T ss_pred             HeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHH
Confidence            45556789999999999998732      3579999997554433336788888765

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=97.18  E-value=0.00082  Score=47.41  Aligned_cols=48  Identities=31%  Similarity=0.412  Sum_probs=36.2

Q ss_pred             ccCeecccCCceeeeEEcC-----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLP-----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||++.+.     .+..+|||.++.........+|.+|+.++
T Consensus         8 ~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l   60 (284)
T cd05038           8 FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEIL   60 (284)
T ss_pred             hheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHH
Confidence            3467999999999999873     25789999997655432227889988765

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=97.18  E-value=0.00063  Score=47.79  Aligned_cols=49  Identities=27%  Similarity=0.423  Sum_probs=35.8

Q ss_pred             CccCeecccCCceeeeEEcCC-C---CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLPD-N---TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|.... +   ..||+|.++.........+|..|+.++
T Consensus         7 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   59 (269)
T cd05065           7 KIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM   59 (269)
T ss_pred             EEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            336789999999999998743 2   369999997543333337899998765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=97.18  E-value=0.00096  Score=47.47  Aligned_cols=49  Identities=31%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             CccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|...      ....+|+|.++.........+|.+|+.+|
T Consensus         3 ~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l   57 (290)
T cd05045           3 VLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLL   57 (290)
T ss_pred             cccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            34578999999999999852      23568999887554433236788888765

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=97.17  E-value=0.00016  Score=45.06  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.1

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcch
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK  137 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~  137 (152)
                      .+-|+.++.|.||+|++.+|+.||||..+..-.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~   48 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRPGIE   48 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcchHHH
Confidence            357899999999999999999999999877554

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=97.17  E-value=0.0005  Score=49.38  Aligned_cols=54  Identities=24%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             hhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..++|...+.||+|+||.||++..      ..+..||+|.++........+.|.+|+.++
T Consensus        33 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   92 (302)
T cd05055          33 PRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIM   92 (302)
T ss_pred             cHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHH
Confidence            334566678999999999999974      124579999987654433336788888765

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=97.17  E-value=0.00069  Score=47.63  Aligned_cols=50  Identities=32%  Similarity=0.513  Sum_probs=36.8

Q ss_pred             CCccCeecccCCceeeeEEcCCC----CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~----~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+.||+|+||.||+|...+.    ..||+|...........+.|.+|+.++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l   61 (270)
T cd05056           8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIM   61 (270)
T ss_pred             ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHH
Confidence            45567899999999999987432    468999986655333337888888765

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=97.17  E-value=0.00054  Score=49.88  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..||+|.++.....  .....+.+|+.+|
T Consensus         3 y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   55 (333)
T cd05600           3 FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDIL   55 (333)
T ss_pred             cEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHH
Confidence            445678999999999999975 4789999999643221  1225677887665

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=97.17  E-value=0.00091  Score=46.44  Aligned_cols=49  Identities=31%  Similarity=0.568  Sum_probs=35.6

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcch----hHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK----IRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~----~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|... ++..|++|.+.....    ....+.|.+|+.+|
T Consensus         3 ~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l   56 (258)
T cd06632           3 RKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALL   56 (258)
T ss_pred             cccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHH
Confidence            34578999999999999985 688999998854321    11125688887665

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=97.17  E-value=0.00048  Score=48.27  Aligned_cols=49  Identities=37%  Similarity=0.584  Sum_probs=37.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..||+|.++..... . .+|.+|+.+|
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~-~-~~~~~e~~~l   56 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-V-EEFLKEAAVM   56 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchH-H-HHHHHHHHHH
Confidence            3555678999999999999974 3778999998754332 2 6788888765

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=97.16  E-value=0.001  Score=46.74  Aligned_cols=47  Identities=34%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             cCeecccCCceeeeEEcCCCC---EEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNT---QIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~---~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||+|.+.+..   .+|+|.++... .....++|.+|+.+|
T Consensus         4 ~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l   54 (272)
T cd05075           4 GKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCM   54 (272)
T ss_pred             ccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHH
Confidence            568999999999999985432   58999886532 222226788887665

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=97.16  E-value=0.00045  Score=48.85  Aligned_cols=50  Identities=26%  Similarity=0.387  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||.|+||.||++... ++..+|+|.++....... ++|.+|+.++
T Consensus         6 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~-~~~~~e~~~l   56 (280)
T cd06611           6 IWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEEL-EDFMVEIDIL   56 (280)
T ss_pred             HHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHH-HHHHHHHHHH
Confidence            3444567899999999999874 578999999876555444 7788888765

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=97.15  E-value=0.00077  Score=49.33  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||+|.. ..+..||+|.++.... ......+.+|+.++
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l   68 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLL   68 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHH
Confidence            4566678899999999999986 4588999999864321 11124577777655

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=97.15  E-value=0.00091  Score=47.31  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=42.5

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      .++.++..+...|.....+|.|+||.||++.. ..+..+|+|.+...... . .++..|+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~-~-~~~~~e~~~   65 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDE-E-EEIKLEINM   65 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHH-H-HHHHHHHHH
Confidence            45666666667777778999999999999987 45788999988543322 2 456666554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=97.15  E-value=0.00072  Score=48.11  Aligned_cols=50  Identities=30%  Similarity=0.466  Sum_probs=37.7

Q ss_pred             CCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.+|+|+||.||++..      .++..+|+|.++..+.... .+|.+|+++|
T Consensus         6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~e~~~l   61 (288)
T cd05093           6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR-KDFHREAELL   61 (288)
T ss_pred             HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHH-HHHHHHHHHH
Confidence            455577899999999999974      2245689999976655444 7888898765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=97.15  E-value=0.00037  Score=53.96  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=34.8

Q ss_pred             ccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHH-HHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRI-NQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~-~~~f~~E~~~l  151 (152)
                      .-+.||+|.||.||||+-. .++.||+|.+........ -+...+|++++
T Consensus         6 v~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~   55 (808)
T KOG0597|consen    6 VYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRIL   55 (808)
T ss_pred             HHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHH
Confidence            3457899999999999863 467899999855433321 16678888775

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=97.15  E-value=0.00089  Score=47.89  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CC--EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NT--QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~--~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|....+||+|+||.||++...+ +.  .+++|.++........++|.+|+.++
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l   56 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVL   56 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHH
Confidence            45556789999999999998743 32  47899887543332236788888765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=97.15  E-value=0.0011  Score=48.45  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .+.|.....||+|+||.||++.. ..+..||||.++..... .....+.+|+.+|
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   68 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLL   68 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHH
Confidence            34566677899999999999985 45779999998653221 1115577787665

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=97.15  E-value=0.00071  Score=48.15  Aligned_cols=49  Identities=24%  Similarity=0.293  Sum_probs=35.0

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++.. .++..||+|.+......  .....+.+|+.+|
T Consensus         3 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l   54 (285)
T cd05605           3 RHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL   54 (285)
T ss_pred             eEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHH
Confidence            3456899999999999986 45789999998643221  1125577787765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=97.14  E-value=0.00032  Score=50.66  Aligned_cols=46  Identities=26%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.+|+|.||+||+|.- ..|..||+|+++.... ......-.+|+.+|
T Consensus        17 eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisll   64 (323)
T KOG0594|consen   17 EKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLL   64 (323)
T ss_pred             HHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHH
Confidence            4589999999999986 5578999999965543 22224455565544

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=97.14  E-value=0.00088  Score=48.13  Aligned_cols=51  Identities=27%  Similarity=0.477  Sum_probs=36.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCC--EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNT--QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~--~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++.  .+|+|.++.........+|.+|+++|
T Consensus         8 ~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l   61 (303)
T cd05088           8 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL   61 (303)
T ss_pred             hceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHH
Confidence            4555678999999999999873 343  46888886544333336788888764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=97.14  E-value=0.00066  Score=48.50  Aligned_cols=52  Identities=31%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             hCCCccCeecccCCceeeeEEcC-----------------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-----------------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-----------------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++...                 +...+|+|.++.........+|.+|+.+|
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l   73 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIM   73 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            34555678999999999987532                 23468999997554333337888998765

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=97.13  E-value=0.0006  Score=50.63  Aligned_cols=50  Identities=22%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.+.....  ......+.+|+.+|
T Consensus         3 f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il   55 (382)
T cd05625           3 FVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDIL   55 (382)
T ss_pred             cEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH
Confidence            45567899999999999986 4577899999864322  11125677887765

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=97.13  E-value=0.00062  Score=48.29  Aligned_cols=50  Identities=24%  Similarity=0.441  Sum_probs=36.0

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..+|+|+++..... .....+.+|+.++
T Consensus         3 y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l   54 (287)
T cd07848           3 FEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKML   54 (287)
T ss_pred             ceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHH
Confidence            445678999999999999984 4778999998643221 1125677787665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.13  E-value=0.00039  Score=54.20  Aligned_cols=50  Identities=28%  Similarity=0.402  Sum_probs=37.5

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      |.+-+.||.|+||.||-+.- .+...||||++....+++  ..++.+.|+..|
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL   80 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFL   80 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHH
Confidence            34445689999999999874 457799999997665543  347788888765

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.12  E-value=0.00032  Score=46.83  Aligned_cols=48  Identities=21%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|.||+|||+.- ..++.||.|+.+..+. ......-++|+-+|
T Consensus         6 kmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicll   55 (292)
T KOG0662|consen    6 KMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLL   55 (292)
T ss_pred             HHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHH
Confidence            356789999999999985 4477899998854322 22224555665443

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=97.12  E-value=0.00051  Score=50.02  Aligned_cols=51  Identities=24%  Similarity=0.354  Sum_probs=36.8

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++.....  ...+.+.+|+.+|
T Consensus        19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l   72 (329)
T PTZ00263         19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSIL   72 (329)
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH
Confidence            4555678999999999999874 4789999998643211  1125688887765

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=97.12  E-value=0.00088  Score=47.85  Aligned_cols=51  Identities=20%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      +++...+.||+|+||.||++...+ +..||||.++.........++..|+.+
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~   66 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDV   66 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHH
Confidence            345556789999999999999855 889999999654332222556666543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=97.11  E-value=0.00067  Score=47.40  Aligned_cols=50  Identities=24%  Similarity=0.249  Sum_probs=37.1

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..+|+|.+..........+|.+|++++
T Consensus         3 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l   53 (265)
T cd06605           3 LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDIL   53 (265)
T ss_pred             chHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHH
Confidence            334567899999999999884 57899999986554333337788887654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=97.11  E-value=0.00074  Score=47.75  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=36.3

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|++|.||+|+.. ++..||+|.++..........+.+|+.++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l   52 (284)
T cd07836           2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLM   52 (284)
T ss_pred             ceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHH
Confidence            445678999999999999974 57899999986543322225667777654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=97.11  E-value=0.001  Score=47.30  Aligned_cols=51  Identities=27%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEcCC-----------------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-----------------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-----------------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++...+                 +..||+|.+..........+|.+|+.+|
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l   73 (296)
T cd05051           6 PLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKIL   73 (296)
T ss_pred             hCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHH
Confidence            34556789999999999987632                 2458999987554333337888888765

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=97.10  E-value=0.00079  Score=48.06  Aligned_cols=51  Identities=27%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             CCCccCeecccCCceeeeEEcCC---------------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD---------------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~---------------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||.+....               ...||+|.++..........|.+|+++|
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l   71 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIM   71 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            34446789999999999886532               1258999997643333336799998776

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=97.10  E-value=0.00076  Score=50.03  Aligned_cols=51  Identities=18%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.+.....  ....+.+.+|+.+|
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il   55 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVL   55 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHH
Confidence            344567899999999999976 4578999999854321  11125677787765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=97.10  E-value=0.00056  Score=48.69  Aligned_cols=51  Identities=25%  Similarity=0.421  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++..... .....+.+|+.++
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l   54 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLL   54 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHH
Confidence            4555678999999999999874 5789999988543221 1115677777654

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=97.10  E-value=0.00085  Score=47.30  Aligned_cols=49  Identities=22%  Similarity=0.462  Sum_probs=35.3

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|.. .++..+|+|.++.........++.+|+.++
T Consensus         4 ~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l   53 (277)
T cd06917           4 QRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALL   53 (277)
T ss_pred             hhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHH
Confidence            3456799999999999996 568899999986543322225677777654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=97.09  E-value=0.00077  Score=48.96  Aligned_cols=50  Identities=22%  Similarity=0.205  Sum_probs=34.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||+|.++.....  ...+.+..|..++
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   54 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVL   54 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            34467899999999999986 45789999998643211  1114566666543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=97.09  E-value=0.00079  Score=48.86  Aligned_cols=50  Identities=20%  Similarity=0.157  Sum_probs=34.1

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..||+|.++....  ....+.+..|..++
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l   54 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVL   54 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            344578999999999999874 367899999864321  11115566666554

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=97.08  E-value=0.00098  Score=47.11  Aligned_cols=50  Identities=32%  Similarity=0.550  Sum_probs=36.3

Q ss_pred             CCccCeecccCCceeeeEEcCC-CC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|.+.+ +.    .+|+|.++.........+|.+|+.+|
T Consensus         9 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l   63 (279)
T cd05057           9 LEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVM   63 (279)
T ss_pred             cEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence            3445789999999999998743 32    58999986654433337788888765

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=97.08  E-value=0.00054  Score=48.39  Aligned_cols=47  Identities=26%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|.||.||+|... ++..||+|.++........++|.+|+.++
T Consensus         9 ~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   56 (277)
T cd06642           9 LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVL   56 (277)
T ss_pred             HHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHH
Confidence            356899999999999863 46789999986443333336788888765

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=97.08  E-value=0.00081  Score=49.64  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=35.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. ..+..+|+|.++.....  .....+.+|+.+|
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il   55 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDIL   55 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHH
Confidence            455567899999999999976 45789999999653221  1114566776654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=97.07  E-value=0.00094  Score=48.15  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             cCeecccCCceeeeEEcC---CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...||+|+||.||++...   .+..+|+|.++.....   .++.+|+.+|
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~---~~~~~E~~~l   52 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGIS---MSACREIALL   52 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCc---HHHHHHHHHH
Confidence            457999999999999863   3578999998653321   4566677655

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=97.07  E-value=0.001  Score=47.14  Aligned_cols=50  Identities=34%  Similarity=0.472  Sum_probs=37.7

Q ss_pred             CCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++.....||+|+||.||++..+      ++..+|+|.++....... .+|.+|+.++
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   61 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR-QDFQREAELL   61 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHH-HHHHHHHHHH
Confidence            3444678999999999999642      355799999876665554 7899988765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=97.06  E-value=0.0012  Score=46.76  Aligned_cols=49  Identities=31%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             CccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||.+.+     .++..||+|.++..........|.+|+.+|
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l   60 (284)
T cd05079           7 KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL   60 (284)
T ss_pred             hhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHH
Confidence            3356799999999999875     346789999997654433336788888765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=97.06  E-value=0.0013  Score=46.59  Aligned_cols=48  Identities=29%  Similarity=0.369  Sum_probs=34.9

Q ss_pred             ccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||.+.+     .++..||+|.++..........|.+|+.+|
T Consensus         8 ~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   60 (283)
T cd05080           8 KIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINIL   60 (283)
T ss_pred             eceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHH
Confidence            356799999999987653     356789999997654322236788888765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=97.04  E-value=0.00092  Score=47.29  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..+|+|.+...... ...+.|.+|+++|
T Consensus         3 y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l   54 (286)
T cd07846           3 YENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRML   54 (286)
T ss_pred             eeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHH
Confidence            444578999999999999985 4789999988543222 1226677887765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=97.04  E-value=0.00094  Score=48.68  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.++....  ....+.|.+|..++
T Consensus         3 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (331)
T cd05597           3 FEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVL   55 (331)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH
Confidence            44467899999999999986 3478999999864221  11225577776554

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=97.03  E-value=0.00082  Score=48.13  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=35.3

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |.....||+|+||.||++... .+..||+|.++..........+.+|+.++
T Consensus         8 y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   58 (301)
T cd07873           8 YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLL   58 (301)
T ss_pred             eEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHH
Confidence            444577999999999999874 47889999986443322224566777654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=97.03  E-value=0.0007  Score=49.48  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++.....  .....|.+|+.+|
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDIL   55 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHH
Confidence            3445678999999999999874 5889999999643221  1125677777665

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.03  E-value=0.00038  Score=33.73  Aligned_cols=25  Identities=40%  Similarity=0.743  Sum_probs=20.8

Q ss_pred             CCCccceeCCCCceeeCCCCCcCCC
Q 042973           20 HCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        20 ~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .|...|.+.++++.|.|+.||...+
T Consensus         7 gC~h~C~~~~g~~~C~C~~Gy~L~~   31 (36)
T PF14670_consen    7 GCSHICVNTPGSYRCSCPPGYKLAE   31 (36)
T ss_dssp             GSSSEEEEETTSEEEE-STTEEE-T
T ss_pred             CcCCCCccCCCceEeECCCCCEECc
Confidence            5788999999999999999998765

...

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=97.02  E-value=0.0014  Score=45.85  Aligned_cols=51  Identities=24%  Similarity=0.394  Sum_probs=36.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc----hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD----KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++...    .....+.|.+|+.+|
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l   58 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLL   58 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHH
Confidence            456678899999999999986 447899999875321    111115677787655

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=97.02  E-value=0.001  Score=47.44  Aligned_cols=49  Identities=24%  Similarity=0.423  Sum_probs=37.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+.||.|+||.||++... ++..+++|.+...+.... ++|.+|+.++
T Consensus        14 y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   63 (292)
T cd06644          14 WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL-EDYMVEIEIL   63 (292)
T ss_pred             hhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHH-HHHHHHHHHH
Confidence            334567999999999999874 478999999976555444 7788887654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=97.02  E-value=0.00098  Score=48.44  Aligned_cols=51  Identities=25%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..+|+|.++....  ......|.+|+.++
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~   55 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIL   55 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            355567899999999999986 4578999999965432  11225677777654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=97.01  E-value=0.00084  Score=48.14  Aligned_cols=52  Identities=25%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             hCCCccCeecccCCceeeeEEc--------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~--------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++.....||+|+||.||++..        .++..||+|.++.........++.+|+.+|
T Consensus        15 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l   74 (304)
T cd05101          15 DKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM   74 (304)
T ss_pred             HHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHH
Confidence            4455568899999999999974        124479999987543333226788887765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=97.01  E-value=0.0012  Score=47.55  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             cCeecccCCceeeeEEcCC---CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD---NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~---~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...||+|+||.||++...+   +..+|+|.++.....   ..+.+|+.+|
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~---~~~~~E~~~l   52 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGIS---MSACREIALL   52 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCc---HHHHHHHHHH
Confidence            3579999999999998743   468999998654321   4566777655

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=97.01  E-value=0.001  Score=48.31  Aligned_cols=49  Identities=16%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++.- .++..||+|+++.... ......+.+|+.+|
T Consensus         3 ~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   53 (338)
T cd07859           3 KIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLL   53 (338)
T ss_pred             EEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHH
Confidence            3356899999999999985 4578999999864321 11125688888765

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.00021  Score=50.77  Aligned_cols=48  Identities=31%  Similarity=0.445  Sum_probs=36.4

Q ss_pred             cCeecccCCceeeeEE-cCCCCEEEEEecCCcc-hhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESD-KIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~ls  152 (152)
                      ...||+|.||+|||.. +.+|..||.|.++-.. ....+++...|+.+|+
T Consensus        24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLk   73 (375)
T KOG0591|consen   24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLK   73 (375)
T ss_pred             HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHH
Confidence            4578999999999995 5789999999996322 1222388889988774

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=97.00  E-value=0.0011  Score=47.38  Aligned_cols=54  Identities=24%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ..++|...+.||+|.||.||+|... ++..||+|.++..... .....+.+|+.++
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~   60 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKIL   60 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHH
Confidence            3455666788999999999999984 4789999999643321 1114566776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=96.99  E-value=0.0006  Score=50.58  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             HhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973           97 KATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus        97 ~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      ...++|...+.||+|+||.||++.. ..+..+|+|.++....  ......|.+|+.+|
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il   97 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIM   97 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH
Confidence            3445666678899999999999986 3578999999854221  11114577777665

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=96.98  E-value=0.0014  Score=46.17  Aligned_cols=52  Identities=27%  Similarity=0.489  Sum_probs=37.6

Q ss_pred             hCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|.....||+|+||.||++...      +...+++|.+..........+|.+|+.+|
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l   62 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMF   62 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHH
Confidence            34556678999999999999863      24579999986544432226788888765

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=96.98  E-value=0.001  Score=46.15  Aligned_cols=49  Identities=35%  Similarity=0.587  Sum_probs=38.1

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|.||.||++...+ +..+++|.++....  . ++|.+|++.+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~-~~~~~e~~~~   52 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--L-QEIIKEISIL   52 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--H-HHHHHHHHHH
Confidence            345566789999999999999855 78999999865433  3 7888887754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>PTZ00036 glycogen synthase kinase; Provisional

Probab=96.98  E-value=0.0008  Score=51.14  Aligned_cols=35  Identities=31%  Similarity=0.676  Sum_probs=28.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ..|...+.||+|+||.||+|.. ..+..||||++..
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~  101 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ  101 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence            4566678899999999999987 4578999998854

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=96.98  E-value=0.0015  Score=46.86  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||+|.+........ +.+.+|+.++
T Consensus        20 ~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l   70 (297)
T cd06656          20 KYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKK-ELIINEILVM   70 (297)
T ss_pred             hceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchH-HHHHHHHHHH
Confidence            455567899999999999985 5688999999965444333 6677777654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=96.97  E-value=0.0011  Score=47.88  Aligned_cols=54  Identities=24%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             hhhCCCccCeecccCCceeeeEEc--------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~--------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ....|...+.||+|+||.||++..        .....+|+|.++.........+|.+|+.+|
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l   71 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELM   71 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHH
Confidence            334555678899999999999864        124578999987544333236788888765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=96.97  E-value=0.00037  Score=50.63  Aligned_cols=51  Identities=20%  Similarity=0.360  Sum_probs=35.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +|..-+.|++|.||.||+|.- ..++.||.|+++.... ..-.-.-++|+.+|
T Consensus        77 efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniL  129 (419)
T KOG0663|consen   77 EFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINIL  129 (419)
T ss_pred             HHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHH
Confidence            344457799999999999985 4478999999965332 11113456777655

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=96.97  E-value=0.0015  Score=46.94  Aligned_cols=50  Identities=34%  Similarity=0.574  Sum_probs=35.0

Q ss_pred             CCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++.    .||+|.+..........+|.+|+.++
T Consensus         9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~   63 (303)
T cd05110           9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIM   63 (303)
T ss_pred             ceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHH
Confidence            444568999999999999863 333    47999886544333325788887654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=96.96  E-value=0.0017  Score=45.22  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|++|.||++.... +..+++|++..........+|.+|+..+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l   53 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTL   53 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHH
Confidence            34556789999999999998854 8899999987654422237788888654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=96.96  E-value=0.0012  Score=46.20  Aligned_cols=50  Identities=24%  Similarity=0.426  Sum_probs=36.5

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|||.+.....  .....+|.+|+.++
T Consensus         4 y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l   56 (267)
T cd08229           4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL   56 (267)
T ss_pred             hhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHH
Confidence            44457899999999999986 5688999998854322  22226788888765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=96.95  E-value=0.0012  Score=47.95  Aligned_cols=50  Identities=28%  Similarity=0.491  Sum_probs=38.1

Q ss_pred             CCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +...+.||+|.||.||.+...+ |...|||.....+.... +.+.+|+.+|+
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~-~~l~~Ei~iL~   69 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTS-ESLEREIRILS   69 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhH-HHHHHHHHHHH
Confidence            3446789999999999998744 88999999966543333 66788887764

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=96.95  E-value=0.0012  Score=48.87  Aligned_cols=50  Identities=22%  Similarity=0.305  Sum_probs=35.6

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. ..+..+|+|.+......  .....+.+|+.+|
T Consensus         3 y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il   55 (376)
T cd05598           3 FVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDIL   55 (376)
T ss_pred             ceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHH
Confidence            44567899999999999986 34789999998643221  1125677787765

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=96.94  E-value=0.001  Score=49.41  Aligned_cols=57  Identities=25%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      +.....+|...+.||+|+||.||++... .+..+|+|.++...  .......|.+|+.++
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~   97 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIM   97 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH
Confidence            3344456666788999999999999874 47789999985422  111124577777654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=96.93  E-value=0.00098  Score=46.41  Aligned_cols=46  Identities=30%  Similarity=0.500  Sum_probs=35.4

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .+..+|+|.++....  . +.|.+|+.++
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~~--~-~~~~~e~~~l   53 (254)
T cd05083           8 LTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDVT--A-QAFLEETAVM   53 (254)
T ss_pred             ceeeeeeccCCCCceEeccc-CCCceEEEeecCcch--H-HHHHHHHHHH
Confidence            44467899999999999986 678899999865332  2 5788887765

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=96.92  E-value=0.0013  Score=48.06  Aligned_cols=50  Identities=28%  Similarity=0.365  Sum_probs=37.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. ..+..||+|.+........ +.+.+|+++|
T Consensus         6 ~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~-~~~~~Ei~~l   56 (342)
T cd07854           6 RYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSV-KHALREIKII   56 (342)
T ss_pred             ceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchH-HHHHHHHHHH
Confidence            455567899999999999986 4578999999865544333 6677777665

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=96.92  E-value=0.0022  Score=44.14  Aligned_cols=48  Identities=29%  Similarity=0.477  Sum_probs=37.4

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|++|.||++... ++..+++|+++....... .++.+|++.+
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   51 (253)
T cd05122           3 EILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKK-EKIINEIQIL   51 (253)
T ss_pred             eeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHH-HHHHHHHHHH
Confidence            34578999999999999985 578999999976554333 7788888765

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=96.92  E-value=0.0013  Score=44.42  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~  134 (152)
                      +...+.||+|+||.||++..++|+.||||.++.
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~   49 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRL   49 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEec
Confidence            444678999999999999998899999998643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=96.91  E-value=0.0013  Score=46.32  Aligned_cols=49  Identities=24%  Similarity=0.399  Sum_probs=35.4

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .....||.|+||.||++... ++..+|+|.+..........+|.+|+.++
T Consensus         4 ~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l   53 (274)
T cd06609           4 TLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFL   53 (274)
T ss_pred             hhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHH
Confidence            33567899999999999874 57899999986543222226778887654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=96.91  E-value=0.0023  Score=44.91  Aligned_cols=51  Identities=22%  Similarity=0.390  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch----hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK----IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~----~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..+|+|.++....    ......+.+|+.+|
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l   58 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLL   58 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHH
Confidence            4666789999999999999863 478999998853211    11115677787665

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=96.91  E-value=0.0014  Score=46.32  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=35.6

Q ss_pred             ccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||+|... .+..||+|.++..........|.+|+.++
T Consensus         8 ~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   56 (277)
T cd06640           8 KLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVL   56 (277)
T ss_pred             hhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHH
Confidence            3467899999999999874 47889999986543333237788888765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=96.91  E-value=0.0014  Score=48.73  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=41.4

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      ..++....++|...+.||+|+||.||++... .+..+|+|.++....  ......|.+|+.++
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~   97 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM   97 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHH
Confidence            3445555577777889999999999999874 467899999854221  11114567776654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=96.91  E-value=0.0017  Score=46.16  Aligned_cols=51  Identities=27%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||.|.+|.||++... .+..+|+|.+...........|.+|+++|
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l   53 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEIN   53 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHH
Confidence            3555678999999999999974 47889999986543323337788898765

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=96.90  E-value=0.0015  Score=47.59  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=34.6

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..+|+|.+.....  ......|.+|..++
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVL   55 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHH
Confidence            3445678999999999999874 467899999864321  11114566666544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=96.90  E-value=0.0016  Score=47.90  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.- ..+..||+|.++... .......+.+|+.++
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   74 (359)
T cd07876          21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLL   74 (359)
T ss_pred             hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHH
Confidence            4565667899999999999976 347899999986432 222226677887665

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=96.89  E-value=0.0018  Score=45.17  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .+..+|+|.++....  . +.|.+|+.++
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~~~--~-~~~~~e~~~l   53 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDAT--A-QAFLAEASVM   53 (256)
T ss_pred             hCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCCch--H-HHHHHHHHHH
Confidence            344467899999999999988 478899999865332  2 5788888665

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.88  E-value=0.0014  Score=50.73  Aligned_cols=51  Identities=27%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .+...+.||+|+|.++|+++- ..|..||+|++....  +...++...+|+++-
T Consensus        19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIH   72 (592)
T KOG0575|consen   19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIH   72 (592)
T ss_pred             eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHH
Confidence            466678999999999999987 779999999995421  222236778888763

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=96.88  E-value=0.0022  Score=45.48  Aligned_cols=50  Identities=26%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             CCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|.+. ++.    .+++|.+..........+|..|+..+
T Consensus         9 ~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l   63 (279)
T cd05111           9 LRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAM   63 (279)
T ss_pred             ceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHH
Confidence            344578999999999999873 343    47888886543322225666666443

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=96.87  E-value=0.0018  Score=45.96  Aligned_cols=49  Identities=20%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             CCccCeecccCCceeeeEEc--CCCCEEEEEecCCcchh-HHHHHHHHHHhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL--PDNTQIAVKKPKESDKI-RINQEFQKEMGI  150 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~--~~~~~vavK~l~~~~~~-~~~~~f~~E~~~  150 (152)
                      |...+.||+|+||.||++..  .++..||+|.++..... .....+.+|+.+
T Consensus         3 Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~   54 (290)
T cd07862           3 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV   54 (290)
T ss_pred             cceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHH
Confidence            44457899999999999975  24678999988543221 111445555544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=96.87  E-value=0.0017  Score=47.32  Aligned_cols=51  Identities=20%  Similarity=0.325  Sum_probs=35.0

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.... +..+|+|.+.....  ......|.+|+.++
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL   55 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHH
Confidence            34456789999999999998744 67899999854221  11224577776554

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=96.86  E-value=0.0023  Score=44.24  Aligned_cols=49  Identities=29%  Similarity=0.525  Sum_probs=36.9

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|++|.||+|... ++..|++|.++....  ... +.+.+|+..+
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~-~~~~~e~~~l   53 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEEL-EALEREIRIL   53 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHH-HHHHHHHHHH
Confidence            445678999999999999985 588999999865442  222 6788887654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=96.85  E-value=0.0023  Score=44.64  Aligned_cols=49  Identities=29%  Similarity=0.446  Sum_probs=36.3

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++... ++..+++|.++..... ...+.+.+|+.++
T Consensus         3 ~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~   53 (264)
T cd06626           3 QRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVL   53 (264)
T ss_pred             eeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHH
Confidence            34578999999999999864 5789999998654432 1227788887665

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.85  E-value=0.00052  Score=33.29  Aligned_cols=23  Identities=52%  Similarity=0.972  Sum_probs=19.6

Q ss_pred             CccceeCCCCceeeCCCCCcCCC
Q 042973           22 EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        22 ~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +++|.+..+++.|.|.+||.+++
T Consensus        11 nA~C~~~~~~~~C~C~~Gy~GdG   33 (36)
T PF12947_consen   11 NATCTNTGGSYTCTCKPGYEGDG   33 (36)
T ss_dssp             TCEEEE-TTSEEEEE-CEEECCS
T ss_pred             CcEeecCCCCEEeECCCCCccCC
Confidence            78999999999999999999986

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=96.84  E-value=0.0013  Score=47.20  Aligned_cols=52  Identities=27%  Similarity=0.269  Sum_probs=36.1

Q ss_pred             hCCCccCeecccCCceeeeEEcC--------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP--------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.+...+.||+|+||.||++...        ....+|+|.++.........++.+|+.++
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l   77 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM   77 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHH
Confidence            34555678999999999998752        23469999997543322226688887655

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=96.84  E-value=0.001  Score=46.63  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=35.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.++....... ..+.+|+.++
T Consensus        11 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~e~~~~   60 (267)
T cd06645          11 FELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDF-AVVQQEIIMM   60 (267)
T ss_pred             HHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHH-HHHHHHHHHH
Confidence            33346789999999999986 4578999999865543333 5567776554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=96.83  E-value=0.0025  Score=44.21  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=36.5

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|++|.||++.. .++..+++|.+...  ..... .+|.+|++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~e~~~l   53 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRRER-EEAIDEARVL   53 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHH-HHHHHHHHHH
Confidence            44467899999999999987 45789999998543  22233 7788888765

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=96.83  E-value=0.0024  Score=45.55  Aligned_cols=50  Identities=30%  Similarity=0.463  Sum_probs=35.2

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh----HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI----RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~----~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|... ++..||+|.++.....    .....+..|++++
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l   56 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLL   56 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHH
Confidence            344567999999999999874 5789999999654332    1114566676654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=96.82  E-value=0.002  Score=45.25  Aligned_cols=31  Identities=26%  Similarity=0.528  Sum_probs=25.8

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ..+.||+|+||.||+|.. .++..+|+|.++.
T Consensus         5 ~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~   36 (272)
T cd06629           5 KGELIGKGTYGRVYLALNVTTGEMMAVKQVEL   36 (272)
T ss_pred             ecceecccCceEEEEEeecCCCceeeeeeeec
Confidence            356899999999999975 4588999998853

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.82  E-value=0.0021  Score=52.90  Aligned_cols=50  Identities=32%  Similarity=0.551  Sum_probs=37.1

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..||+|+++....  ....+.|.+|++++
T Consensus         4 YeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~IL   56 (932)
T PRK13184          4 YDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIA   56 (932)
T ss_pred             eEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHH
Confidence            445678999999999999864 478999999964321  12226789998765

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=96.82  E-value=0.0027  Score=45.39  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=36.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..+|+|.+........ +.|.+|+.++
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~e~~~l   70 (293)
T cd06647          20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKK-ELIINEILVM   70 (293)
T ss_pred             hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHH-HHHHHHHHHH
Confidence            444567899999999999975 4578899999865443333 6788887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=96.82  E-value=0.0027  Score=45.21  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..+|+|.+......  .....+.+|+.+|
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il   54 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQIL   54 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHH
Confidence            334578999999999999874 4789999998543221  1114577787665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=96.82  E-value=0.0021  Score=45.94  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             eecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          107 FLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       107 ~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .||+|+||.||++.. .++..||+|.+........ ..|.+|+.++
T Consensus        27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~e~~~l   71 (292)
T cd06657          27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRR-ELLFNEVVIM   71 (292)
T ss_pred             HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHH-HHHHHHHHHH
Confidence            589999999999987 4678999999865443333 6788887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=96.81  E-value=0.0018  Score=47.76  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..+|+|.++.....  .....+.+|+.+|
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDIL   55 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH
Confidence            3455678999999999999874 4789999999643221  1125566776654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=96.80  E-value=0.0025  Score=45.81  Aligned_cols=51  Identities=29%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|.||.||++... ++..||+|.+.....  ....+++.+|++++
T Consensus        16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l   69 (307)
T cd06607          16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFL   69 (307)
T ss_pred             hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHH
Confidence            3555678999999999999873 578999998854322  12225788888765

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=96.80  E-value=0.0024  Score=45.15  Aligned_cols=48  Identities=23%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||++.. .++..||+|.+..... ......|.+|+.++
T Consensus         4 ~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l   53 (286)
T cd07832           4 ILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKAL   53 (286)
T ss_pred             EEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHH
Confidence            356789999999999987 4588999999865432 12226788887664

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=96.80  E-value=0.0027  Score=46.51  Aligned_cols=53  Identities=17%  Similarity=0.338  Sum_probs=37.6

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++.. .++..||||.+..... ......+.+|+.+|
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   68 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLL   68 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHH
Confidence            34566667899999999999975 4688999999854221 11125677787665

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.79  E-value=0.00055  Score=32.29  Aligned_cols=24  Identities=42%  Similarity=1.045  Sum_probs=21.2

Q ss_pred             CC--CccceeCC-CCceeeCCCCCcCC
Q 042973           20 HC--EGKCKNTI-GSCTCDCPIGMYGD   43 (152)
Q Consensus        20 ~c--~~~C~~~~-g~~~C~C~~g~~~~   43 (152)
                      ||  +++|.+.. +.|.|.|+.||.+.
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            67  68999988 99999999999875

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=96.79  E-value=0.0024  Score=45.19  Aligned_cols=45  Identities=27%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..||+|+||.||++.... +..+++|.+........ +.|.+|+.++
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   56 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEEL-EDYMVEIDIL   56 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHH-HHHHHHHHHH
Confidence            468999999999998744 66889999866554444 7788888765

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=96.78  E-value=0.0024  Score=46.32  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=26.8

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~  134 (152)
                      |...+.||+|+||.||++... .+..||+|.++.
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~   35 (323)
T cd05616           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKK   35 (323)
T ss_pred             ceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEH
Confidence            444678999999999999874 467899999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=96.78  E-value=0.0023  Score=45.23  Aligned_cols=50  Identities=22%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||+|.++..... .....|.+|+++|
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l   53 (284)
T cd07860           2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL   53 (284)
T ss_pred             ceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHH
Confidence            44567899999999999987 35789999998643322 1225678888765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=96.78  E-value=0.0012  Score=52.89  Aligned_cols=39  Identities=46%  Similarity=0.911  Sum_probs=32.5

Q ss_pred             CC--CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC
Q 042973            5 AR--VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         5 ~~--C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|  |++.|+|. ++.++-..+|.|.+|++.|.|.+||.+++
T Consensus       820 DG~~c~dvDeC~-psrChp~A~CyntpgsfsC~C~pGy~GDG  860 (1289)
T KOG1214|consen  820 DGHQCTDVDECS-PSRCHPAATCYNTPGSFSCRCQPGYYGDG  860 (1289)
T ss_pred             CccccccccccC-ccccCCCceEecCCCcceeecccCccCCC
Confidence            55  99999996 44333388999999999999999999976

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=96.77  E-value=0.0025  Score=49.57  Aligned_cols=45  Identities=29%  Similarity=0.408  Sum_probs=32.7

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++||+|.||.|.|+.-. .++.||||+++..-..-  ++-..|+.+|
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~--~Q~~~Ei~iL  236 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFL--RQAQIEIRIL  236 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChHHH--HHHHHHHHHH
Confidence            467999999999999753 37899999997654332  3445566554

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=96.77  E-value=0.00035  Score=50.22  Aligned_cols=47  Identities=36%  Similarity=0.540  Sum_probs=36.6

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |..-..||+|+||.|||+.- ..|..||||.....+..   ++...|+.+|
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDL---QEIIKEISIM   82 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDL---QEIIKEISIM   82 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchH---HHHHHHHHHH
Confidence            33345689999999999976 55899999998665443   6788888876

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=96.76  E-value=0.0021  Score=46.84  Aligned_cols=51  Identities=25%  Similarity=0.287  Sum_probs=35.3

Q ss_pred             CCCccCeecccCCceeeeEEcCC--------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD--------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~--------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+...+.||+|+||.||++....        ...||+|.++........++|.+|+.++
T Consensus        13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   71 (334)
T cd05100          13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMM   71 (334)
T ss_pred             HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHH
Confidence            34446789999999999997421        2368999987543332226788888765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=96.76  E-value=0.0039  Score=43.62  Aligned_cols=50  Identities=24%  Similarity=0.386  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch---hH--HHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK---IR--INQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~---~~--~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.++....   .+  ..+.|.+|+..|
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l   57 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLM   57 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHH
Confidence            45567899999999999975 5678999999854321   11  126788888765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=96.75  E-value=0.0021  Score=45.01  Aligned_cols=52  Identities=25%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++++|...+.||+|+||.||++... ++..+++|.++......  ++|.+|+.++
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~e~~~l   56 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEE--EEIKEEYNIL   56 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhH--HHHHHHHHHH
Confidence            4566777788999999999999974 46789999986544332  6688887654

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=96.74  E-value=0.0037  Score=43.20  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=36.5

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ...+.||+|.+|.||++... ++..+++|.+...... .....|.+|++++
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   53 (254)
T cd06627           3 QLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLL   53 (254)
T ss_pred             eeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHH
Confidence            34578999999999999874 5779999999665431 1226788888765

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=96.73  E-value=0.0025  Score=44.99  Aligned_cols=47  Identities=26%  Similarity=0.378  Sum_probs=34.6

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++... ++..+|+|.++... ......+|.+|+.++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l   52 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLL   52 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHH
Confidence            457899999999999875 47899999997653 111225677887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=96.72  E-value=0.003  Score=44.63  Aligned_cols=31  Identities=39%  Similarity=0.574  Sum_probs=26.1

Q ss_pred             cCeecccCCceeeeEEcCC-CCEEEEEecCCc
Q 042973          105 SHFLGEGGFGSVYKGVLPD-NTQIAVKKPKES  135 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~  135 (152)
                      .+.||+|+||.||+|...+ +..|++|.+...
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~   35 (283)
T cd07830           4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKK   35 (283)
T ss_pred             heeeccCCceEEEEEEECCCCcEEEEEEehhh
Confidence            5679999999999999854 678999998654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=96.72  E-value=0.0032  Score=44.10  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc----hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD----KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~----~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..+|+|.+....    .......|.+|+.++
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l   58 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLL   58 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHH
Confidence            456678999999999999986 447899999874211    111225788887765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.71  E-value=0.0023  Score=30.80  Aligned_cols=32  Identities=50%  Similarity=1.077  Sum_probs=24.9

Q ss_pred             cccccCCCCCCC--CccceeCCCCceeeCCCCCcCC
Q 042973           10 IDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus        10 ~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      .++|...  .+|  ++.|.+..+.|.|.|+.|+.+.
T Consensus         2 ~~~C~~~--~~C~~~~~C~~~~~~~~C~C~~g~~g~   35 (38)
T cd00054           2 IDECASG--NPCQNGGTCVNTVGSYRCSCPPGYTGR   35 (38)
T ss_pred             cccCCCC--CCcCCCCEeECCCCCeEeECCCCCcCC
Confidence            4667532  357  6789999999999999998874

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=96.70  E-value=0.0025  Score=45.22  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++.|...+.+|+|.||.||++... ++..+++|.++.... .. ..|.+|+++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~-~~~~~e~~~l   69 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NK-ELIINEILIM   69 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hH-HHHHHHHHHH
Confidence            4455666678999999999999985 578999999976544 22 6788887765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=96.70  E-value=0.003  Score=45.70  Aligned_cols=50  Identities=30%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+|+|.++....  .....+|.+|+.+|
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l   79 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFL   79 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHH
Confidence            44467899999999999986 4578999999854322  11125688887665

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=96.69  E-value=0.0032  Score=46.46  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=36.6

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.- ..+..||||++..... ......+.+|+.++
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   77 (364)
T cd07875          24 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM   77 (364)
T ss_pred             cceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHH
Confidence            4566677899999999999975 3478899999964321 11125677777654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=96.67  E-value=0.0019  Score=47.09  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc-chhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES-DKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~-~~~~~~~~f~~E~~~l  151 (152)
                      +...+++|...+.||+|+||.||++.- .++..||+|++... ......+.+.+|+.++
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   63 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLL   63 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHH
Confidence            344566777778999999999999975 46889999988532 1111125677777655

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=96.67  E-value=0.0017  Score=47.59  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CCCccCeecccCCceeeeEEcCC--CCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD--NTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~--~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|.....||+|+||.||++...+  +..||+|.+.....  ....+.|.+|+.+|
T Consensus        31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l   85 (340)
T PTZ00426         31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKIL   85 (340)
T ss_pred             hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHH
Confidence            45556789999999999998643  35899999854321  11125677887765

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=96.66  E-value=0.0032  Score=44.47  Aligned_cols=47  Identities=23%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .+.||+|.+|.||++.. .+|..||+|++...... .....|.+|+..+
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l   52 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLL   52 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHH
Confidence            46799999999999986 46889999998643321 1115677787655

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=96.66  E-value=0.0025  Score=45.03  Aligned_cols=50  Identities=28%  Similarity=0.433  Sum_probs=35.5

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |.....||+|+||.||++... ++..||+|++..... ....+.|.+|+.++
T Consensus         3 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l   54 (286)
T cd07847           3 YEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRML   54 (286)
T ss_pred             eeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHH
Confidence            444567999999999999885 478999998854322 11125677887665

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=96.66  E-value=0.003  Score=43.86  Aligned_cols=50  Identities=22%  Similarity=0.393  Sum_probs=35.5

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..+|+|.+...... ...+.+.+|+.++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l   53 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILL   53 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHH
Confidence            444678999999999999984 4788999998543211 1125677887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=96.66  E-value=0.0038  Score=43.42  Aligned_cols=49  Identities=18%  Similarity=0.250  Sum_probs=34.6

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++... .+..+|+|.++........+.+.+|+.++
T Consensus         3 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l   52 (255)
T cd08219           3 NVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLL   52 (255)
T ss_pred             eEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHH
Confidence            33568999999999999863 57889999885433222226677776654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=96.65  E-value=0.0033  Score=44.77  Aligned_cols=49  Identities=31%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++...      +...+++|.++....... +.|.+|+.++
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~~~e~~~l   61 (291)
T cd05094           7 IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAAR-KDFQREAELL   61 (291)
T ss_pred             eEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHH-HHHHHHHHHH
Confidence            444678999999999999742      345689999876555444 6788888765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=96.65  E-value=0.003  Score=43.98  Aligned_cols=51  Identities=24%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.+|+|+||.||++... .+..+++|.+........ +.+.+|+.++
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~-~~~~~e~~~l   54 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDF-EIIQQEISML   54 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhH-HHHHHHHHHH
Confidence            34555678999999999999873 467899999865544433 7788887765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=96.65  E-value=0.0032  Score=50.39  Aligned_cols=46  Identities=26%  Similarity=0.442  Sum_probs=39.6

Q ss_pred             cCeecccCCceeeeEEcCCC-CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDN-TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~-~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|.+|+|+.||.+....+ ..+|+|++-..+..+. +...+|+.+|
T Consensus        42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L-~~v~~EI~~M   88 (738)
T KOG1989|consen   42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEAL-NAVKREIDIM   88 (738)
T ss_pred             EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHH-HHHHHHHHHH
Confidence            56799999999999998665 8999999977777776 8899999887

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=96.64  E-value=0.0053  Score=41.50  Aligned_cols=47  Identities=34%  Similarity=0.467  Sum_probs=36.1

Q ss_pred             ccCeecccCCceeeeEEcCC-CCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ..+.||+|++|.||++...+ +..+|+|.+...... .. +.+.+|++.+
T Consensus         3 ~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~-~~~~~e~~~~   51 (225)
T smart00221        3 LGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQR-EEFLREIRIL   51 (225)
T ss_pred             eeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHH-HHHHHHHHHH
Confidence            35678999999999999865 789999999765443 33 6777777654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=96.64  E-value=0.0023  Score=45.30  Aligned_cols=50  Identities=28%  Similarity=0.440  Sum_probs=36.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|.||.||++... ++..||+|.++.... ....+.|.+|+.+|
T Consensus         3 y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l   54 (288)
T cd07833           3 YEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVL   54 (288)
T ss_pred             eeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHH
Confidence            445678999999999999875 477999999864322 11226788888765

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=96.63  E-value=0.0038  Score=44.70  Aligned_cols=50  Identities=16%  Similarity=0.353  Sum_probs=36.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+...+.||+|+||.||++.. .++..+|+|.+........ ..|.+|+.++
T Consensus        21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~-~~~~~e~~~l   71 (296)
T cd06654          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK-ELIINEILVM   71 (296)
T ss_pred             ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchH-HHHHHHHHHH
Confidence            344456799999999999985 4578999999865444333 6677887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>smart00090 RIO RIO-like kinase

Probab=96.63  E-value=0.0059  Score=42.67  Aligned_cols=33  Identities=18%  Similarity=0.149  Sum_probs=27.9

Q ss_pred             CCccCeecccCCceeeeEE--cCCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGV--LPDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~--~~~~~~vavK~l~~  134 (152)
                      +...+.||+|+||.||++.  ..+|..||+|.++.
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~   64 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRT   64 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence            3445789999999999998  67899999999864

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=96.63  E-value=0.003  Score=45.87  Aligned_cols=46  Identities=26%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~  150 (152)
                      .+.||+|+||.||++.. .++..||||.++....  ....+.+.+|..+
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~   52 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRI   52 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHH
Confidence            46799999999999987 4578999999964321  1111455556543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=96.62  E-value=0.0026  Score=45.33  Aligned_cols=51  Identities=27%  Similarity=0.463  Sum_probs=36.5

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|.+|.||+|... ++..||+|.++..... .....|.+|+.++
T Consensus         3 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l   55 (294)
T PLN00009          3 QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLL   55 (294)
T ss_pred             ceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHH
Confidence            3555678999999999999874 5789999998543221 1125677787665

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=96.61  E-value=0.0036  Score=46.00  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ...|...+.||+|+||.||++.- ..+..||||.++.... ......+.+|+.+|
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   70 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM   70 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHH
Confidence            34566667899999999999975 3478899999964322 12125677777654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=96.61  E-value=0.0029  Score=44.82  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=26.3

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCC
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKE  134 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~  134 (152)
                      ...+.||+|+||.||++... ++..||+|.++.
T Consensus         3 ~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~   35 (288)
T cd07863           3 EPVAEIGVGAYGTVYKARDPHSGHFVALKSVRV   35 (288)
T ss_pred             eEeeEEeecCCeEEEEEEECCCCcEEEEEEecc
Confidence            34567999999999999864 578999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=96.57  E-value=0.0029  Score=45.33  Aligned_cols=45  Identities=27%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..||+|+||.||++.. .++..||+|.++....... ..+.+|+.++
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~e~~~l   72 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRR-ELLFNEVVIM   72 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchH-HHHHHHHHHH
Confidence            4689999999999986 4588999999865443333 6677777654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=96.57  E-value=0.0036  Score=44.95  Aligned_cols=48  Identities=27%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             CccCeecccCCceeeeEEcC---CCCEEEEEecCCcc---hhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP---DNTQIAVKKPKESD---KIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~---~~~~~~~f~~E~~~l  151 (152)
                      .....||+|+||.||++...   .+..+|+|.+....   .... ..+.+|+.++
T Consensus         3 ~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~-~~~~~e~~~l   56 (316)
T cd07842           3 EIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGIS-QSACREIALL   56 (316)
T ss_pred             eEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCcc-HHHHHHHHHH
Confidence            33567999999999999974   47899999996532   2112 5566676554

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.56  E-value=0.001  Score=50.27  Aligned_cols=30  Identities=40%  Similarity=0.589  Sum_probs=25.4

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +.||.|.||.||+|+- ..+..||||+++..
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~K   46 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKK   46 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhh
Confidence            4689999999999985 55888999999654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=96.56  E-value=0.0045  Score=48.30  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESD  136 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~  136 (152)
                      .|+. +.+|+|++|.||++++.+ |+.||||.++...
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i  156 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDI  156 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcch
Confidence            4554 578999999999999987 9999999997643

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=96.56  E-value=0.0027  Score=47.47  Aligned_cols=50  Identities=24%  Similarity=0.367  Sum_probs=38.0

Q ss_pred             CCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      +...+.||.|.||.||+..-+. |..+|+|.+.......  ...+..+|+.+|
T Consensus        37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il   89 (382)
T KOG0032|consen   37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAIL   89 (382)
T ss_pred             EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHH
Confidence            4445789999999999998766 8899999995433322  226888999887

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=96.56  E-value=0.0056  Score=42.53  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..+.||.|+||.||++.. .++..+|+|.++.... ....+.+.+|+.+|
T Consensus         4 ~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l   53 (265)
T cd08217           4 VLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNIL   53 (265)
T ss_pred             eeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence            356789999999999976 4578899999864322 22226688887665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=96.54  E-value=0.0038  Score=45.39  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CCccCeecccCCceeeeEEc----CCCCEEEEEecCCcch---hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDK---IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++..    ..+..+|+|.++....   ....+.+..|+.+|
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l   58 (332)
T cd05614           2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVL   58 (332)
T ss_pred             ceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHH
Confidence            34457899999999998865    3578999999854321   11114566676554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=96.53  E-value=0.0042  Score=43.79  Aligned_cols=46  Identities=24%  Similarity=0.164  Sum_probs=31.2

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      .+.||+|.||.||++.. .++..+|+|.++............+|+..
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~   50 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQA   50 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHH
Confidence            45789999999999986 45789999998653222111334455544

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=96.53  E-value=0.005  Score=43.19  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=26.5

Q ss_pred             CCccCeecccCCceeeeEEcCC--CCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD--NTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~--~~~vavK~l~~  134 (152)
                      |...+.||+|+||.||++....  +..+|+|.+..
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~   36 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINV   36 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeec
Confidence            3445679999999999999854  67899998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=96.53  E-value=0.0054  Score=43.06  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..+|+|.+....  .......+.+|+.++
T Consensus         3 y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~   55 (280)
T cd05581           3 FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVL   55 (280)
T ss_pred             ceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHH
Confidence            444678999999999999874 58899999985422  122225677777654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=96.53  E-value=0.0037  Score=44.80  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=37.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|.....||.|.||.||++.. .++..||+|.+........ +.+.+|+.++
T Consensus        20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~-~~~~~e~~~l   70 (296)
T cd06655          20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKK-ELIINEILVM   70 (296)
T ss_pred             eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchH-HHHHHHHHHH
Confidence            355556799999999999975 5688999999865444333 6778887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=96.52  E-value=0.0044  Score=44.31  Aligned_cols=45  Identities=29%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..||+|+||.||++.. ..+..||+|.+........ +.|.+|+..+
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l   73 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRR-ELLFNEVVIM   73 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHH-HHHHHHHHHH
Confidence            4689999999999976 4578999999865444333 6688887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=96.52  E-value=0.0051  Score=43.42  Aligned_cols=47  Identities=28%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             ccCeecccCCceeeeEEcCC-CCEEEEEecCCcchh-HHHHHHHHHHhh
Q 042973          104 ESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKI-RINQEFQKEMGI  150 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~-~~~~~f~~E~~~  150 (152)
                      ..+.||+|+||.||++.... +..+|+|.++..... .....+.+|+.+
T Consensus         3 ~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~   51 (287)
T cd07838           3 ELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIAL   51 (287)
T ss_pred             EEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHH
Confidence            35679999999999999854 889999999643221 111455566543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=96.52  E-value=0.0046  Score=43.68  Aligned_cols=49  Identities=24%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ...+.||+|++|.||+|... ++..||+|.++..... .....+.+|+.++
T Consensus         3 ~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   53 (285)
T cd07861           3 TKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLL   53 (285)
T ss_pred             eEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHH
Confidence            34567999999999999874 5889999998643221 1115677777654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=96.52  E-value=0.0045  Score=43.99  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=34.3

Q ss_pred             CccCeecccCCceeeeEEc----CCCCEEEEEecCCcchh---HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDKI---RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~~---~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||.+..    ++|..||+|.++.....   ...+.+.+|+.+|
T Consensus         3 ~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l   58 (290)
T cd05613           3 ELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVL   58 (290)
T ss_pred             eeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHH
Confidence            3456799999999999875    46889999998653221   1125567777654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=96.50  E-value=0.0032  Score=45.23  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=35.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. ..+..||+|.++..... .....+.+|+.++
T Consensus         7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   60 (309)
T cd07845           7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLL   60 (309)
T ss_pred             cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHH
Confidence            4566677899999999999987 45889999998643221 1113455666544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=96.47  E-value=0.0053  Score=44.23  Aligned_cols=51  Identities=22%  Similarity=0.363  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++...+ +..+|+|.+.......  ..+.+..|+++|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEIL   55 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHH
Confidence            34456789999999999998754 7899999996533221  225677777655

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=96.44  E-value=0.0062  Score=44.14  Aligned_cols=49  Identities=18%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             CccCeecccCCceeeeEEcCC-CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++.... +..+|+|.+..... ....+.|.+|++.+
T Consensus         3 ~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l   53 (330)
T cd07834           3 ELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLL   53 (330)
T ss_pred             eeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHH
Confidence            345689999999999999744 78999999865432 12226677777654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=96.43  E-value=0.0047  Score=47.36  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD  136 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~  136 (152)
                      ++|..-..||+|+||+||.+.-. .|..+|+|+|+...
T Consensus       141 ~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~  178 (550)
T KOG0605|consen  141 DDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE  178 (550)
T ss_pred             ccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence            45666678999999999998764 48899999997644

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=96.41  E-value=0.0067  Score=42.15  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=35.6

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.+|++.. .++..+|+|.+...  ..... .++.+|+.++
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~-~~~~~e~~~l   53 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKER-EESRKEVAVL   53 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHH-HHHHHHHHHH
Confidence            34467899999999999876 45789999998543  22222 6788887665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.41  E-value=0.005  Score=44.95  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .|.....||+|+||.||++.- ..+..||+|.++...  .... ..+.+|+.+|
T Consensus         6 ~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~-~~~~~E~~~l   58 (337)
T cd07858           6 KYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDA-KRTLREIKLL   58 (337)
T ss_pred             ceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchh-HHHHHHHHHH
Confidence            455567899999999999985 457899999986432  2222 4566676654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=96.41  E-value=0.0078  Score=41.72  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. ..+..+|+|.+..... ......|.+|+.+|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   53 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVL   53 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHH
Confidence            34457899999999999876 4577899999854321 12226788888765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=96.39  E-value=0.0049  Score=43.88  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=35.8

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..+|+|.++....  ......+.+|+++|
T Consensus         3 y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l   55 (290)
T cd05580           3 FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRIL   55 (290)
T ss_pred             eEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            444678999999999999874 578999999854321  11225677887665

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=96.39  E-value=0.0071  Score=43.01  Aligned_cols=49  Identities=29%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +..-+.||+|++|.||++.. .++..+++|.++....... +.+.+|+.++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~-~~~~~e~~~l   70 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRR-ELLFNEVVIM   70 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHH-HHHHHHHHHH
Confidence            33346899999999999985 4578899999865444333 6677887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=96.39  E-value=0.0078  Score=41.95  Aligned_cols=52  Identities=23%  Similarity=0.397  Sum_probs=37.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh----HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI----RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~----~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|++|.||++.. ..+..+|+|.++.....    .....+.+|+.++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l   58 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLL   58 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHH
Confidence            3566678999999999999986 45789999988543211    1115677787655

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=96.36  E-value=0.0041  Score=43.98  Aligned_cols=49  Identities=20%  Similarity=0.403  Sum_probs=34.0

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      ...+.||+|.||.||++.. .+|..+|+|.++..... .....+.+|+.+|
T Consensus         3 ~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l   53 (284)
T cd07839           3 EKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL   53 (284)
T ss_pred             eeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHH
Confidence            3356799999999999987 45889999998543221 1114566676654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03212 serine/threonine kinase US3; Provisional

Probab=96.35  E-value=0.0045  Score=46.38  Aligned_cols=45  Identities=11%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.- ..+..||+|....       ..+.+|+.+|
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-------~~~~~E~~il  137 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-------GGTATEAHIL  137 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-------hhhHHHHHHH
Confidence            3466677899999999999975 4578899997542       4456676655

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=96.33  E-value=0.0064  Score=44.27  Aligned_cols=52  Identities=19%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.. ..+..||+|++...... .....+.+|+.+|
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l   58 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKIL   58 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHH
Confidence            4566677899999999999986 35889999998653221 1125566777655

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=96.32  E-value=0.0041  Score=45.31  Aligned_cols=50  Identities=24%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||+|... ++..+|+|++...  +.... ..+.+|+.++
T Consensus         8 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~-~~~~~E~~~l   60 (337)
T cd07852           8 KYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDA-QRTFREIMFL   60 (337)
T ss_pred             HHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhh-hhhhHHHHHH
Confidence            4445678999999999999874 4788999988532  22222 4566777654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PRK10345 hypothetical protein; Provisional

Probab=96.31  E-value=0.0079  Score=41.30  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++....||+|+||.||.  .+.....+||++........ +++.+|+.+|
T Consensus         4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~-~~~~rEi~~l   50 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGD-KEIRRELKYY   50 (210)
T ss_pred             cCCcceecCCCceEEEE--CCCCcCeEEEEEeccccchH-HHHHHHHHHH
Confidence            34567899999999996  33333347998865433333 7788888765

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=96.31  E-value=0.0045  Score=44.06  Aligned_cols=51  Identities=24%  Similarity=0.380  Sum_probs=35.5

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      +|...+.||+|.||.||++... ++..+|+|.++...... ....+.+|+.+|
T Consensus         6 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   58 (293)
T cd07843           6 EYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINIL   58 (293)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHH
Confidence            3445678999999999999985 47889999996433221 114566776554

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=96.31  E-value=0.008  Score=44.17  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=37.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.- ..+..||+|.+.... .......+.+|+.++
T Consensus        16 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   69 (353)
T cd07850          16 KRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLM   69 (353)
T ss_pred             cceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHH
Confidence            4566667899999999999986 458899999985421 212125677777665

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=96.30  E-value=0.0078  Score=41.93  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=35.9

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||.|+||.||++... ++..+|+|.+.....  ....+.+.+|+..+
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l   54 (258)
T cd05578           2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRIL   54 (258)
T ss_pred             ceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHH
Confidence            344578999999999999874 478999999864321  11226788887654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=96.29  E-value=0.0041  Score=44.46  Aligned_cols=52  Identities=29%  Similarity=0.401  Sum_probs=35.8

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..+|+|.+......+ ....+.+|++++
T Consensus         8 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   61 (311)
T cd07866           8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKIL   61 (311)
T ss_pred             ccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHH
Confidence            45666778999999999999873 57889999885432211 114556666554

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=96.29  E-value=0.011  Score=41.12  Aligned_cols=46  Identities=35%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             cCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHH-HHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRIN-QEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~-~~f~~E~~~  150 (152)
                      .+.||+|+||.||++.... +..+|+|.++........ ....+|+.+
T Consensus         4 ~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~   51 (260)
T PF00069_consen    4 VKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKI   51 (260)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhc
Confidence            4679999999999999855 458999999765544321 233345543

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=96.26  E-value=0.0098  Score=41.08  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=35.6

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||.|+||.||++... ++..+++|.+...... ....++.+|++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   53 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKIL   53 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHH
Confidence            344567999999999999974 4789999999654331 2226677777654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=96.23  E-value=0.01  Score=42.91  Aligned_cols=47  Identities=36%  Similarity=0.435  Sum_probs=33.5

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||+|.. ..+..|++|.+......  ....++.+|++++
T Consensus        26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l   75 (313)
T cd06633          26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFL   75 (313)
T ss_pred             ceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHH
Confidence            46799999999999986 35788999998543221  1115677777654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=96.23  E-value=0.0062  Score=44.31  Aligned_cols=31  Identities=35%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      .+.||+|+||.||++.. ..+..||+|.++..
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~   45 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKII   45 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeecc
Confidence            45799999999999985 35889999998543

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=96.19  E-value=0.0072  Score=48.52  Aligned_cols=51  Identities=25%  Similarity=0.352  Sum_probs=35.8

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..||+|.++....  ......|..|+.+|
T Consensus         5 ~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l   58 (669)
T cd05610           5 EFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDAL   58 (669)
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHH
Confidence            4555678999999999999874 578999999864321  11125666776554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=96.17  E-value=0.007  Score=43.25  Aligned_cols=51  Identities=24%  Similarity=0.389  Sum_probs=35.0

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      +|.....||+|+||.||++.. .++..||+|.+...... .....+.+|+.++
T Consensus        13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l   65 (310)
T cd07865          13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKIL   65 (310)
T ss_pred             heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHH
Confidence            455567899999999999987 35789999988543221 1113455666654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=96.16  E-value=0.0089  Score=42.42  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             ccCeecccCCceeeeEEc----CCCCEEEEEecCCcch---hHHHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDK---IRINQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l  151 (152)
                      ..+.||+|+||.||++..    .++..+|||.++....   ....+.|.+|+.++
T Consensus         4 ~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l   58 (288)
T cd05583           4 LLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVL   58 (288)
T ss_pred             EEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHH
Confidence            356799999999999875    3467899999864322   11125677777654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=96.16  E-value=0.01  Score=42.62  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=36.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..||+|.+......  .....+.+|+.++
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l   55 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDIL   55 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHH
Confidence            3455678999999999999863 4678999998654321  1125677787654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.10  E-value=0.0086  Score=45.23  Aligned_cols=53  Identities=23%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ..+....+||.|.-+.||+|.- |-+..||||++.-..-+..-++..+|+..||
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~ms   79 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMS   79 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhh
Confidence            3455567899999999999975 6789999999965433332377888988775

>PHA03211 serine/threonine kinase US3; Provisional

Probab=96.10  E-value=0.0063  Score=46.69  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=26.9

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPK  133 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~  133 (152)
                      +|.....||+|+||.||++..+. +..||||...
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~  203 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW  203 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc
Confidence            56666789999999999998854 6789999643

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=96.09  E-value=0.0095  Score=41.91  Aligned_cols=47  Identities=28%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             cCeecccCCceeeeEEcCC-CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ...||+|.||.||++.... +..+|+|.++.... ......+..|+.++
T Consensus         4 ~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l   52 (282)
T cd07829           4 LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLL   52 (282)
T ss_pred             ehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHH
Confidence            4578999999999999854 88999999865431 11115666776654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=96.09  E-value=0.011  Score=43.31  Aligned_cols=52  Identities=19%  Similarity=0.364  Sum_probs=36.9

Q ss_pred             hhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .++|.....||+|+||.||++... ++..||+|.+....  .... ..+.+|+.++
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~-~~~~~E~~~l   68 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHA-KRTYRELRLL   68 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHH-HHHHHHHHHH
Confidence            345666678999999999999874 47889999986432  2222 5566777654

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=96.07  E-value=0.0078  Score=43.32  Aligned_cols=50  Identities=26%  Similarity=0.377  Sum_probs=34.7

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|.. .++..+|+|.+....  ......+|.+|+.++
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l   69 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL   69 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHH
Confidence            33356789999999999986 357789999885321  112225677887665

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=96.05  E-value=0.012  Score=42.78  Aligned_cols=50  Identities=20%  Similarity=0.340  Sum_probs=34.0

Q ss_pred             CCccCeecccCCceeeeEEcCC---CCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD---NTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~---~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++....   +..+|+|.++..... ...+.+.+|+.++
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l   55 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLL   55 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHH
Confidence            3345679999999999999743   668999998643211 1125677777654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=96.02  E-value=0.016  Score=40.24  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||.... .++..+++|.+....  .... .+|.+|+.+|
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~e~~~l   53 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKER-RDALNEIVIL   53 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHH-HHHHHHHHHH
Confidence            34457899999998887765 457889999875432  2233 6788888765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=95.97  E-value=0.011  Score=27.80  Aligned_cols=25  Identities=52%  Similarity=1.031  Sum_probs=21.3

Q ss_pred             CCC--CccceeCCCCceeeCCCCCcCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      .+|  ++.|.+..+.+.|.|+.|+.+.
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCccc
Confidence            356  4889999999999999999876

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=95.96  E-value=0.016  Score=40.14  Aligned_cols=50  Identities=28%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..+++|.+..... .....++.+|+.++
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   53 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRIL   53 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHH
Confidence            34457899999999999875 4578899999864322 12226777887654

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=95.95  E-value=0.016  Score=40.18  Aligned_cols=49  Identities=20%  Similarity=0.242  Sum_probs=34.2

Q ss_pred             CccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|++|.||++... ++..+|+|.+..... ....+.+.+|+.++
T Consensus         3 ~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l   53 (257)
T cd08223           3 CFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLL   53 (257)
T ss_pred             eEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHH
Confidence            34568999999999999863 467899999854322 12225677777654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.89  E-value=0.011  Score=46.66  Aligned_cols=52  Identities=27%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      ++|....+||+|.||.|+.+.+. .++..|||.|+...--+  +.+....|.+++
T Consensus       368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~  422 (694)
T KOG0694|consen  368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIF  422 (694)
T ss_pred             cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHH
Confidence            34555668999999999999983 46789999996543211  114455555543

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=95.84  E-value=0.02  Score=40.28  Aligned_cols=47  Identities=28%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .+.||+|++|.||++... ++..+++|.++..... .....+.+|+.+|
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l   52 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLL   52 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHH
Confidence            357899999999999874 5788999998654332 1125677777654

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=95.81  E-value=0.013  Score=35.27  Aligned_cols=32  Identities=22%  Similarity=0.618  Sum_probs=19.8

Q ss_pred             cccccCCCCCCC--CccceeCC-----CCceeeCCCCCcC
Q 042973           10 IDECLDKEKYHC--EGKCKNTI-----GSCTCDCPIGMYG   42 (152)
Q Consensus        10 ~~~C~~~~~~~c--~~~C~~~~-----g~~~C~C~~g~~~   42 (152)
                      .++|.+.. ..|  ||.|....     .-|.|.|......
T Consensus         5 ~~aC~~~T-n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~   43 (103)
T PF12955_consen    5 NDACENAT-NNCSGHGSCVKKYGSGGGDCFACKCKPTVVK   43 (103)
T ss_pred             HHHHHHhc-cCCCCCceEeeccCCCccceEEEEeeccccc
Confidence            45665432 346  88998762     4467999775443

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>PHA02882 putative serine/threonine kinase; Provisional

Probab=95.76  E-value=0.0092  Score=42.70  Aligned_cols=32  Identities=28%  Similarity=0.560  Sum_probs=23.5

Q ss_pred             CCCccCeecccCCceeeeEEcCCC----CEEEEEec
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDN----TQIAVKKP  132 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~----~~vavK~l  132 (152)
                      .|...+.||+|+||.||++...+.    ..+|+|..
T Consensus        13 ~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~   48 (294)
T PHA02882         13 EWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE   48 (294)
T ss_pred             ceEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence            455567899999999999997543    35566653

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=95.73  E-value=0.013  Score=45.50  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             CeecccCCceeeeEEcCCCCEEEEEecCCcchh
Q 042973          106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKI  138 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~  138 (152)
                      +-++.++.|.||+|++.+|+.||||..+..-..
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~  163 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRE  163 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHH
Confidence            568999999999999999999999999876543

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=95.72  E-value=0.013  Score=42.82  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      +...+.||+|+||.|.++.- ++|..||||++...  +.... +.-.+|+.+|
T Consensus        24 y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~a-kRtlRElklL   75 (359)
T KOG0660|consen   24 YVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDA-KRTLRELKLL   75 (359)
T ss_pred             ecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHH-HHHHHHHHHH
Confidence            33346799999999999976 56899999999632  22222 4455666554

>PHA03209 serine/threonine kinase US3; Provisional

Probab=95.70  E-value=0.013  Score=43.29  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-CCEEEEEecCC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKE  134 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~  134 (152)
                      .+|...+.||+|+||.||++.... +..||+|....
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~  101 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK  101 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc
Confidence            346667789999999999998743 56899997543

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=95.68  E-value=0.0054  Score=46.06  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCcchhHH--HHHHHHHHhhhC
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRI--NQEFQKEMGIVL  152 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~--~~~f~~E~~~ls  152 (152)
                      +.||+|.||.|-++.- ..|+.||||.++...-.+.  --...+|+++||
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMS  108 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMS  108 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHh
Confidence            4589999999998865 5689999999965432222  034678999886

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=95.65  E-value=0.015  Score=48.58  Aligned_cols=55  Identities=16%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             HhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973           97 KATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus        97 ~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .....|.....||+|+||.||++.. ..+..+|+|.+..... ......|..|+.+|
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL   66 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVM   66 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            3344566677899999999999986 3466889998854321 12226788888765

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=95.64  E-value=0.03  Score=39.14  Aligned_cols=48  Identities=25%  Similarity=0.498  Sum_probs=33.1

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH--------HHHHHHHHHhhh
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR--------INQEFQKEMGIV  151 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~--------~~~~f~~E~~~l  151 (152)
                      ....||+|+||.||+|.. .++..+|+|.+.......        ..+.|.+|+.++
T Consensus         4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l   60 (267)
T cd06628           4 KGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALL   60 (267)
T ss_pred             ccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            356899999999999986 357889999885432210        114577777654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=95.62  E-value=0.01  Score=43.44  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=35.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +.|...++||+|+||+||...- +.++..|+|.|+...-  ..+.+...+|..+|
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL   79 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNIL   79 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHH
Confidence            4577778999999999998865 3477899999954321  11114455555554

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=95.46  E-value=0.015  Score=25.36  Aligned_cols=20  Identities=35%  Similarity=0.688  Sum_probs=15.6

Q ss_pred             CceeeCCCCCcCCC-CCccCC
Q 042973           31 SCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        31 ~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      +|.|.|++||...+ +..|..
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            58999999998765 666753

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=95.43  E-value=0.027  Score=43.37  Aligned_cols=49  Identities=12%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             CCccCeecccCCceeeeEEcC-C-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-D-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.-. + +..||+|.+........ ..+.+|+.+|
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~-~~~~~E~~~l  119 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQA-AYARSELHCL  119 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHH-HHHHHHHHHH
Confidence            444668999999999999752 2 56788887755444433 6677888765

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=95.37  E-value=0.016  Score=34.73  Aligned_cols=10  Identities=30%  Similarity=0.617  Sum_probs=6.0

Q ss_pred             eCCCCCcCCC
Q 042973           35 DCPIGMYGDG   44 (152)
Q Consensus        35 ~C~~g~~~~~   44 (152)
                      .|..||..++
T Consensus        41 ~C~~GY~~~~   50 (96)
T PTZ00382         41 ECNSGFSLDN   50 (96)
T ss_pred             cCcCCcccCC
Confidence            5667766544

>KOG4260 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.28  E-value=0.01  Score=41.78  Aligned_cols=36  Identities=31%  Similarity=0.585  Sum_probs=30.8

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      |.|+|||... +.||  +..|.|..|+|.|.+.+||.+.
T Consensus       233 CvDvnEC~~e-p~~c~~~qfCvNteGSf~C~dk~Gy~~g  270 (350)
T KOG4260|consen  233 CVDVNECQNE-PAPCKAHQFCVNTEGSFKCEDKEGYKKG  270 (350)
T ss_pred             cccHHHHhcC-CCCCChhheeecCCCceEecccccccCC
Confidence            9999999864 3467  8889999999999999888773

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=95.14  E-value=0.028  Score=42.21  Aligned_cols=47  Identities=28%  Similarity=0.359  Sum_probs=33.0

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hh-H----HHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KI-R----INQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~-~----~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.|-.|.= ..|..||||.++..- .. .    ...+..+|+++|
T Consensus       177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieIL  230 (475)
T KOG0615|consen  177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEIL  230 (475)
T ss_pred             eeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHH
Confidence            56799999999998864 458899999994321 11 1    113356888887

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.09  E-value=0.005  Score=48.77  Aligned_cols=45  Identities=29%  Similarity=0.485  Sum_probs=34.4

Q ss_pred             eecccCCceeeeEEcCCC-CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          107 FLGEGGFGSVYKGVLPDN-TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       107 ~ig~g~~g~Vy~g~~~~~-~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .||.|+||.|||+.-.+- ..-|.|.+...+.... .+|+-|+++|+
T Consensus        39 ELGDGAFGKVyKA~nket~~lAAaKvIetkseEEL-EDylVEIeILa   84 (1187)
T KOG0579|consen   39 ELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEEL-EDYLVEIEILA   84 (1187)
T ss_pred             hhcCccchhhhhhhcccchhhhhhhhhcccchhHH-hhhhhhhhhhh
Confidence            469999999999987543 3446788866666555 89999999875

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=95.07  E-value=0.034  Score=43.51  Aligned_cols=48  Identities=15%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             CccCeecccCCceeeeEEcCCCCEEEEEec-C-Ccc-----hhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLPDNTQIAVKKP-K-ESD-----KIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l-~-~~~-----~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||+|.+.+. .+++|+. . ...     .....+.|.+|+.+|
T Consensus       336 ~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l  390 (535)
T PRK09605        336 IPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLL  390 (535)
T ss_pred             CccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHH
Confidence            3467899999999999998544 3443332 1 111     111125677887665

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=95.00  E-value=0.028  Score=39.58  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=26.7

Q ss_pred             ccCeecccCCceeeeEEc-CCCCEEEEEecCCcc
Q 042973          104 ESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD  136 (152)
Q Consensus       104 ~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~  136 (152)
                      .-+.||+|+||.+|.|.. .+|..||||.-+...
T Consensus        19 lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a   52 (341)
T KOG1163|consen   19 LVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA   52 (341)
T ss_pred             EEEeecCCchhheeeeeeccCCceEEEEeecccC
Confidence            346799999999999964 789999999865443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=94.99  E-value=0.014  Score=36.47  Aligned_cols=16  Identities=25%  Similarity=0.295  Sum_probs=7.9

Q ss_pred             eeeeehhhhHHHHHHH
Q 042973           53 ITTIVAVIGAVIFSVI   68 (152)
Q Consensus        53 ~~~ii~~~~~~~~~~~   68 (152)
                      +.+|++++.+++++++
T Consensus        66 i~~Ii~gv~aGvIg~I   81 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGII   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHHHH
Confidence            3455555555554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=94.98  E-value=0.037  Score=26.12  Aligned_cols=25  Identities=52%  Similarity=1.003  Sum_probs=20.8

Q ss_pred             CCCCc-cceeCCCCceeeCCCCCcCC
Q 042973           19 YHCEG-KCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus        19 ~~c~~-~C~~~~g~~~C~C~~g~~~~   43 (152)
                      .+|.. .|.+..+.+.|.|+.|+.++
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCccC
Confidence            36733 89999999999999999873

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.86  E-value=0.04  Score=41.17  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      .+...+.||+|.||.|+.|.. ..+..||+|.++.
T Consensus        18 ~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~   52 (370)
T KOG0583|consen   18 KYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR   52 (370)
T ss_pred             ceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence            455567899999999999965 4579999997644

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=94.65  E-value=0.07  Score=38.31  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             CeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          106 HFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      ..||.|..|.|++..+.+ |..+|||.++......+.+..+.++.+
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldv  143 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDV  143 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhH
Confidence            358999999999999855 788999999765543332444444443

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=94.59  E-value=0.024  Score=42.35  Aligned_cols=51  Identities=24%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             hhhCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..+.+...+.||+|.|+.||+++...    ...||+|.+...+..+   -..+|++.|
T Consensus        34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~---ri~~El~~L   88 (418)
T KOG1167|consen   34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPS---RILNELEML   88 (418)
T ss_pred             hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCch---HHHHHHHHH
Confidence            33455667889999999999998733    5679999997655542   355555543

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=94.57  E-value=0.013  Score=47.36  Aligned_cols=32  Identities=34%  Similarity=0.691  Sum_probs=25.6

Q ss_pred             CCccCeecccCCce-eeeEEcCCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGS-VYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~-Vy~g~~~~~~~vavK~l~~  134 (152)
                      |+..+++|.|.-|+ ||+|.+ +|+.||||++-.
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~  543 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE  543 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhh
Confidence            44456788888877 799999 789999999844

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.49  E-value=0.027  Score=40.30  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +.+++-||-|+||.||..+- ++|..||.|++...-.  .+. +.|-+|+.+|
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~-krvFre~kmL  106 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASC-KRVFREIKML  106 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHH-HHHHHHHHHH
Confidence            44567899999999998876 5688999999844221  122 4555565544

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=94.44  E-value=0.082  Score=35.52  Aligned_cols=42  Identities=24%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             CeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|++|.++.||.|.| .|..+|+|.-+..+..   ..+..|+++|
T Consensus        28 ~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~ds~r---~~l~kEakiL   69 (201)
T COG2112          28 KELAKGTTSVVYLGEW-RGGEVALKVRRRDSPR---RNLEKEAKIL   69 (201)
T ss_pred             hhhhcccccEEEEeec-cCceEEEEEecCCcch---hhHHHHHHHH
Confidence            4689999999999999 4568999887655443   5677777654

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=94.44  E-value=0.035  Score=38.19  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      ...||+|++|.|-+-+. ++|+.+|||.++..-..++....+.|+.+
T Consensus        51 i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi   97 (282)
T KOG0984|consen   51 IEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDI   97 (282)
T ss_pred             hhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhh
Confidence            34589999999876654 67999999999654443333667777654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.29  E-value=0.023  Score=47.20  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=28.4

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~  134 (152)
                      .|.....+|+|+||+||+|+-.+|..||+|.=+.
T Consensus       699 ~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P  732 (974)
T KOG1166|consen  699 KFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP  732 (974)
T ss_pred             eEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence            3444567999999999999998899999998654

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=94.27  E-value=0.015  Score=45.57  Aligned_cols=34  Identities=38%  Similarity=0.613  Sum_probs=28.2

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhH
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR  139 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~  139 (152)
                      .+-||+|+-|.||.|.+ .++.||||+.++....+
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~elkETd  162 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVRELKETD  162 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHhhhhhhh
Confidence            45689999999999999 56899999997765443

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=93.97  E-value=0.069  Score=25.90  Aligned_cols=27  Identities=11%  Similarity=0.388  Sum_probs=12.3

Q ss_pred             eeeehhhhHHHHHHHHHHHHHHHHHHH
Q 042973           54 TTIVAVIGAVIFSVIVGILIFIGCIER   80 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
                      ..+++++.++++++++.++....++||
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcykk   32 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYKK   32 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            445555554444444444443344443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=93.92  E-value=0.13  Score=37.41  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=30.6

Q ss_pred             cccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          109 GEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       109 g~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      |.|+|++||.+.. ..+..||+|.++..... ...+.|.+|+.++
T Consensus         9 g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~   53 (328)
T cd08226           9 GFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLS   53 (328)
T ss_pred             cccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            7889999999986 46899999998643322 2225677777554

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=93.89  E-value=0.032  Score=40.80  Aligned_cols=55  Identities=25%  Similarity=0.286  Sum_probs=38.2

Q ss_pred             hHHHHHHhhhCCCccCeecccCCceeeeEE-cCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           91 CAAKLVKATKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        91 ~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++++-+-|     .++||+|+|+.|-... +..|...|||++........ ....+|++++
T Consensus        74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR-~RvfREVe~f  129 (463)
T KOG0607|consen   74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSR-SRVFREVETF  129 (463)
T ss_pred             hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHH-HHHHHHHHHH
Confidence            345554444     4679999999998665 35688999999966543333 6677777764

>PHA03210 serine/threonine kinase US3; Provisional

Probab=93.82  E-value=0.029  Score=43.51  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=17.8

Q ss_pred             hCCCccCeecccCCceeeeEEc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL  121 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~  121 (152)
                      ..|...+.||+|+||+||++.+
T Consensus       148 ~~Y~ii~~LG~G~fG~Vyl~~~  169 (501)
T PHA03210        148 AHFRVIDDLPAGAFGKIFICAL  169 (501)
T ss_pred             hccEEEeEecCCCCcceEEEEE
Confidence            3455567899999999998875

>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]

Probab=93.79  E-value=0.0094  Score=48.18  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=26.7

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEcC
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVLP  122 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~  122 (152)
                      +..+||+...+ ....+.+|+|+||+||.|.-.
T Consensus       985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen  985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred             CChhHHHHHHH-HhhhhhhccCccceEEEecCC
Confidence            55678888777 777889999999999999863

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=93.76  E-value=0.095  Score=36.60  Aligned_cols=36  Identities=11%  Similarity=-0.173  Sum_probs=28.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESD  136 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~  136 (152)
                      ..+...+++|+|+||.||.... ++..+|+|.++...
T Consensus        31 ~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~   66 (232)
T PRK10359         31 YNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKV   66 (232)
T ss_pred             CceEEEEEecCCCceEEEEEec-CCCcEEEEEechhc
Confidence            4455567899999999998665 56789999996543

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=93.61  E-value=0.14  Score=35.59  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             CccCeecccCCceeeeEEcCC-CCEEEEEecC
Q 042973          103 DESHFLGEGGFGSVYKGVLPD-NTQIAVKKPK  133 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~  133 (152)
                      ...+.||+|+||.||++.... +..+++|.++
T Consensus         3 ~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~   34 (260)
T cd08222           3 ILQQRLGKGSFGTVYLVKDKKAVAEERLKVLK   34 (260)
T ss_pred             eeeeeecCCCCceEEEEEecCCCCcceEEEec
Confidence            345789999999999998633 3445555554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=93.56  E-value=0.12  Score=39.69  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             hhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ..+.|.....||+|.||.|-.+.- .++..+|||.|..
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K  132 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPK  132 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeech
Confidence            445566677899999999998874 4578999999944

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=93.52  E-value=0.15  Score=46.23  Aligned_cols=27  Identities=30%  Similarity=0.739  Sum_probs=23.3

Q ss_pred             CCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           18 KYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        18 ~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      ..||  +++|.-..++|.|.|+.||.|..
T Consensus      3908 snPC~~GgtCip~~n~f~CnC~~gyTG~~ 3936 (4289)
T KOG1219|consen 3908 SNPCLTGGTCIPFYNGFLCNCPNGYTGKR 3936 (4289)
T ss_pred             CCCCCCCCEEEecCCCeeEeCCCCccCce
Confidence            3578  88999999999999999998854

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=93.38  E-value=0.075  Score=38.79  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=26.2

Q ss_pred             CCCccCeecccCCceeeeEEcCCC--CEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDN--TQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~--~~vavK~l~~~  135 (152)
                      .+.....||+|+||.||.+.-...  ..+|+|.-...
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~   55 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKE   55 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEec
Confidence            455677899999999999986443  36788776543

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=93.19  E-value=0.13  Score=32.56  Aligned_cols=14  Identities=14%  Similarity=-0.005  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHh
Q 042973           68 IVGILIFIGCIERR   81 (152)
Q Consensus        68 ~~~~~~~~~~~~~~   81 (152)
                      +++++++-.+|+|+
T Consensus        16 ~~~~~~~~rRR~r~   29 (130)
T PF12273_consen   16 LFLFYCHNRRRRRR   29 (130)
T ss_pred             HHHHHHHHHHHhhc
Confidence            33344444556666

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=93.08  E-value=0.15  Score=37.62  Aligned_cols=33  Identities=33%  Similarity=0.615  Sum_probs=26.5

Q ss_pred             CCCccCeecccCCceeeeEE-cCCCCEEEEEecC
Q 042973          101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPK  133 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~  133 (152)
                      +|.-...||+|.||..+.|+ +-++++||||.-.
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEP   62 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEP   62 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEecc
Confidence            34446789999999999996 4578999999763

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=93.05  E-value=0.2  Score=36.40  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             cccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          109 GEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       109 g~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |.++|++||++.. ++|..||+|+++.... ......+.+|+.++
T Consensus         9 G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l   53 (327)
T cd08227           9 GFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVS   53 (327)
T ss_pred             cccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHH
Confidence            5558899999987 5688999999965432 22224566676654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=93.03  E-value=0.12  Score=40.21  Aligned_cols=50  Identities=18%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEE-cCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      |..-..||+|+-|.||.+. ...+..||||++........ +-..+|+.+|+
T Consensus       275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~k-eLilnEi~Vm~  325 (550)
T KOG0578|consen  275 YTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKK-ELLLNEILVMR  325 (550)
T ss_pred             hcchhhhccccccceeeeeeccCCceEEEEEEEeccCCch-hhhHHHHHHHH
Confidence            3444579999999999885 35678899999965443333 66778887763

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.90  E-value=0.14  Score=41.54  Aligned_cols=42  Identities=33%  Similarity=0.587  Sum_probs=29.9

Q ss_pred             eecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          107 FLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       107 ~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      ++|+|.||+||.|+-.+ ...+|||.+...++... +-...|+.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~-QPLhEEIa  624 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREV-QPLHEEIA  624 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhh-ccHHHHHH
Confidence            68999999999998533 45789999976655443 33444443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=92.79  E-value=0.15  Score=31.87  Aligned_cols=31  Identities=35%  Similarity=0.496  Sum_probs=14.7

Q ss_pred             eeeehhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 042973           54 TTIVAVIGAVIFSVIVGILIFIGCIERRKQK   84 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (152)
                      ..|+..++.+++.+++++++++++.+|++++
T Consensus        64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4443333334445555666665555555444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=92.78  E-value=0.23  Score=29.22  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=28.6

Q ss_pred             CCceeeCCCCCcCCCCCccCCcceeeeehhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhHHHHHHhh
Q 042973           30 GSCTCDCPIGMYGDGKVDCRGFHITTIVAVIGAVIFSVIVGILIFIGCIERRKQKNFLKKWCAAKLVKAT   99 (152)
Q Consensus        30 g~~~C~C~~g~~~~~~~~c~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (152)
                      |+.+|+-.....+.+..-+......+-.++.+.+++++++++.+++.++.|++ ....+.....|+..-+
T Consensus        17 g~vhcqa~~nsaGgdL~atS~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K-~~~~r~~~~reLval~   85 (98)
T PF07204_consen   17 GNVHCQASQNSAGGDLQATSSFVAYWPYLAAGGGLILILIIIALVCCCRAKHK-TSAARNTFHRELVALT   85 (98)
T ss_pred             cchheeccccCCCCCeEEeehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhh-hHhhhhHHHHHHHHHh
Confidence            55667655444444422222111122233333444444444444444444332 2223334445555433

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=92.76  E-value=0.19  Score=39.52  Aligned_cols=52  Identities=21%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHH-HHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRI-NQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~-~~~f~~E~~~l  151 (152)
                      ..+.....||+|.|+.|..+.. ..+..||+|.++....+.. .+.+.+|+.+|
T Consensus        56 g~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~im  109 (596)
T KOG0586|consen   56 GLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIM  109 (596)
T ss_pred             cceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHH
Confidence            3445566799999999999976 3488999999966544332 14588888776

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=92.40  E-value=0.13  Score=42.11  Aligned_cols=47  Identities=21%  Similarity=0.391  Sum_probs=34.7

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR  139 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~  139 (152)
                      +.+.-.++.|...++||.|.+|.||++.- .+++..|+|++......+
T Consensus        12 ~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~d   59 (953)
T KOG0587|consen   12 SSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEE   59 (953)
T ss_pred             hhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcccc
Confidence            33444555666677899999999999974 568889999986655544

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.25  E-value=0.076  Score=41.49  Aligned_cols=46  Identities=24%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCC--cchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKE--SDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~--~~~~~~~~~f~~E~~~l  151 (152)
                      ...||.|+...||+....+.+.+|+|+...  .+.... +.|.+|+.+|
T Consensus       366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl-~gy~nEI~lL  413 (677)
T KOG0596|consen  366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTL-DGYRNEIALL  413 (677)
T ss_pred             HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHH-HHHHHHHHHH
Confidence            345899999999999988888899988743  233333 8899999876

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=92.24  E-value=0.055  Score=33.62  Aligned_cols=13  Identities=15%  Similarity=-0.123  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHh
Q 042973           69 VGILIFIGCIERR   81 (152)
Q Consensus        69 ~~~~~~~~~~~~~   81 (152)
                      ++..++++++.|+
T Consensus        94 llsg~lv~rrcrr  106 (129)
T PF12191_consen   94 LLSGFLVWRRCRR  106 (129)
T ss_dssp             -------------
T ss_pred             HHHHHHHHhhhhc
Confidence            3333333333333

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=92.22  E-value=0.03  Score=30.55  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=0.4

Q ss_pred             eeeehhhhHHHHHHHHHHHHHHHHHHH
Q 042973           54 TTIVAVIGAVIFSVIVGILIFIGCIER   80 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
                      +.++.+.++++++.+++++++++++++
T Consensus        12 aavIaG~Vvgll~ailLIlf~iyR~rk   38 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLILFLIYRMRK   38 (64)
T ss_dssp             -------------------------S-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555454444444444444433

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF15102 TMEM154: TMEM154 protein family

Probab=92.05  E-value=0.066  Score=34.32  Aligned_cols=7  Identities=14%  Similarity=0.197  Sum_probs=2.8

Q ss_pred             eeeehhh
Q 042973           54 TTIVAVI   60 (152)
Q Consensus        54 ~~ii~~~   60 (152)
                      +.|++..
T Consensus        59 LmIlIP~   65 (146)
T PF15102_consen   59 LMILIPL   65 (146)
T ss_pred             EEEeHHH
Confidence            3344443

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=91.96  E-value=0.27  Score=22.99  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=16.5

Q ss_pred             CccceeCCCCceeeCCCCCcCCC
Q 042973           22 EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        22 ~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|+|...  ...|.|.+||.+..
T Consensus        11 ~G~C~~~--~g~C~C~~g~~G~~   31 (32)
T PF07974_consen   11 HGTCVSP--CGRCVCDSGYTGPD   31 (32)
T ss_pred             CCEEeCC--CCEEECCCCCcCCC
Confidence            7788866  34899999998864

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PHA03207 serine/threonine kinase US3; Provisional

Probab=91.92  E-value=0.3  Score=36.55  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             CCccCeecccCCceeeeEEcC---CCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP---DNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~  134 (152)
                      |.....||+|+||.||++...   .+..||+|.+..
T Consensus        94 y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~  129 (392)
T PHA03207         94 YNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG  129 (392)
T ss_pred             eEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence            445677999999999998753   246799998854

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=91.52  E-value=0.063  Score=30.57  Aligned_cols=14  Identities=7%  Similarity=0.109  Sum_probs=6.6

Q ss_pred             hhhHHHHHHhhhCC
Q 042973           89 KWCAAKLVKATKNY  102 (152)
Q Consensus        89 ~~~~~~l~~~~~~~  102 (152)
                      +.+|+|-..+...|
T Consensus        56 P~TYEDP~qAV~eF   69 (75)
T PF14575_consen   56 PHTYEDPNQAVREF   69 (75)
T ss_dssp             GGGSSSHHHHHHHC
T ss_pred             cccccCHHHHHHHH
Confidence            34455544444444

...

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=91.37  E-value=0.34  Score=34.77  Aligned_cols=44  Identities=23%  Similarity=0.116  Sum_probs=31.2

Q ss_pred             CeecccCCceeeeEEcCCCCEEEEEecCCc--chhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKES--DKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~--~~~~~~~~f~~E~~~l  151 (152)
                      +.+|.|+++.||++.. ++..||+|+++..  +.... ..+.+|+.+|
T Consensus         8 ~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~-~~~~~Ei~~l   53 (314)
T cd08216           8 KCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDL-KLLQQEIITS   53 (314)
T ss_pred             HhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHH-HHHHHHHHHH
Confidence            3456777777888876 7899999998643  22233 6788888765

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=91.36  E-value=0.17  Score=35.75  Aligned_cols=47  Identities=32%  Similarity=0.365  Sum_probs=33.8

Q ss_pred             CCccCeecccCCceeeeEE-cCCCCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      |...+.+|+|+|..||.+. +.++...|+|++.-.+..+. +.-++|++
T Consensus        23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~-e~~~rEid   70 (302)
T KOG2345|consen   23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDI-EEALREID   70 (302)
T ss_pred             EEEeeeecCCCceeeeeecccCcccchhhheeeccchHHH-HHHHHHHH
Confidence            4445689999999999876 45688999999965544433 55566654

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.35  E-value=0.073  Score=26.25  Aligned_cols=18  Identities=11%  Similarity=0.117  Sum_probs=7.6

Q ss_pred             eeeehhhhHHHHHHHHHH
Q 042973           54 TTIVAVIGAVIFSVIVGI   71 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~   71 (152)
                      ..|..++.+.+.++++++
T Consensus        11 vaIa~~VvVPV~vI~~vl   28 (40)
T PF08693_consen   11 VAIAVGVVVPVGVIIIVL   28 (40)
T ss_pred             EEEEEEEEechHHHHHHH
Confidence            334444444444443333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.31  E-value=0.062  Score=45.21  Aligned_cols=59  Identities=19%  Similarity=0.233  Sum_probs=40.6

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .+++...++|..-.+||+|+||.|......+ +...|.|+|..+.-  .....-|..|=.+|
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDim  129 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIM  129 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHH
Confidence            4555566777777899999999999888744 66789999965322  11114466665554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=91.25  E-value=0.11  Score=40.44  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             hhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecC
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPK  133 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~  133 (152)
                      ...+|...++||+|+|.+|++++- ..+..+|||+|.
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~  107 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD  107 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence            345566688999999999999975 447889999994

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=90.86  E-value=0.072  Score=40.73  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=31.2

Q ss_pred             hhHHHHHHhh-hCCCccCeecccCCceeeeEEcCC-CCEEEEEecC
Q 042973           90 WCAAKLVKAT-KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPK  133 (152)
Q Consensus        90 ~~~~~l~~~~-~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~  133 (152)
                      |.+-|++..+ +.|..-++||+|+||+||-....+ |.-.|.|+|.
T Consensus       174 WK~lE~qpvt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~  219 (591)
T KOG0986|consen  174 WKWLELQPVTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD  219 (591)
T ss_pred             HHHHHhhhccccceeeeEEEecccccceeEEEEecchhhHHHHHHH
Confidence            3344444444 346667899999999999887644 6678888883

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=90.85  E-value=0.78  Score=32.21  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             ecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          108 LGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       108 ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +|+|.||.||++.- .++..+|+|.++..
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~   52 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAK   52 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehh
Confidence            59999999999986 45778999988543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=90.77  E-value=0.3  Score=38.23  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             ecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          108 LGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       108 ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|+|-|++|.++.- ..|+.||||+++.+..-.  +.=+.|+++|
T Consensus       440 ~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~--KtGl~EleiL  482 (752)
T KOG0670|consen  440 TGKGVFSTVVRARDQARGQEVAIKIIRNNEVMH--KTGLKELEIL  482 (752)
T ss_pred             cccceeeeeeeccccCCCCeeEEEEeecchHHh--hhhhHHHHHH
Confidence            58999999999975 237799999997643322  3344555544

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=90.70  E-value=0.13  Score=37.68  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=23.4

Q ss_pred             cCeecccCCceeeeEEcCC-----CCEEEEEecCCc
Q 042973          105 SHFLGEGGFGSVYKGVLPD-----NTQIAVKKPKES  135 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-----~~~vavK~l~~~  135 (152)
                      ...||+|.||.|||+.-.+     ....|+|+++..
T Consensus        29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~   64 (438)
T KOG0666|consen   29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE   64 (438)
T ss_pred             cceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence            4568999999999996422     126899999654

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=90.46  E-value=0.2  Score=36.03  Aligned_cols=46  Identities=26%  Similarity=0.458  Sum_probs=33.8

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHH
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEM  148 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~  148 (152)
                      .|.....+|+|.||.+....- +..+.+++|-....-...  .+|.+|.
T Consensus        25 ~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~--~dF~rEf   71 (378)
T KOG1345|consen   25 VYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQ--ADFVREF   71 (378)
T ss_pred             hhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhH--HHHHHHh
Confidence            344456799999999998876 446789999886544433  7888875

>PHA02887 EGF-like protein; Provisional

Probab=90.42  E-value=0.24  Score=30.45  Aligned_cols=25  Identities=36%  Similarity=0.736  Sum_probs=20.1

Q ss_pred             CC-CccceeCC--CCceeeCCCCCcCCC
Q 042973           20 HC-EGKCKNTI--GSCTCDCPIGMYGDG   44 (152)
Q Consensus        20 ~c-~~~C~~~~--g~~~C~C~~g~~~~~   44 (152)
                      -| +|+|....  ....|.|+.||.|..
T Consensus        93 YCiHG~C~yI~dL~epsCrC~~GYtG~R  120 (126)
T PHA02887         93 FCINGECMNIIDLDEKFCICNKGYTGIR  120 (126)
T ss_pred             EeeCCEEEccccCCCceeECCCCcccCC
Confidence            36 88998754  567899999999876

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.41  E-value=0.016  Score=40.94  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=29.3

Q ss_pred             cCeecccCCceeeeEEcCC-CCEEEEEecC-CcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-NTQIAVKKPK-ESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~-~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+|+|.||+||+++-.+ |..||+|+.- ++.+..-..+-++|+.+|
T Consensus        22 ~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL   70 (376)
T KOG0669|consen   22 LAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKIL   70 (376)
T ss_pred             HHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHH
Confidence            3568999999999998755 5568887652 222222113445555443

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=90.18  E-value=0.059  Score=34.77  Aligned_cols=15  Identities=20%  Similarity=0.306  Sum_probs=7.8

Q ss_pred             eeeeehhhhHHHHHH
Q 042973           53 ITTIVAVIGAVIFSV   67 (152)
Q Consensus        53 ~~~ii~~~~~~~~~~   67 (152)
                      ++++++|++++++++
T Consensus        51 VIGvVVGVGg~ill~   65 (154)
T PF04478_consen   51 VIGVVVGVGGPILLG   65 (154)
T ss_pred             EEEEEecccHHHHHH
Confidence            355566655554443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=90.09  E-value=0.41  Score=34.76  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +|.....||.|+||.|...+. .+|.-.|+|+|+..
T Consensus        45 dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~   80 (355)
T KOG0616|consen   45 DFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ   80 (355)
T ss_pred             hhhheeeeccCccceEEEEEEccCCceeehhhcCHH
Confidence            344456899999999998876 34778899999653

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=90.01  E-value=0.15  Score=18.76  Aligned_cols=12  Identities=50%  Similarity=1.149  Sum_probs=8.6

Q ss_pred             eeeCCCCCcCCC
Q 042973           33 TCDCPIGMYGDG   44 (152)
Q Consensus        33 ~C~C~~g~~~~~   44 (152)
                      .|.|++||.|..
T Consensus         1 ~C~C~~G~~G~~   12 (13)
T PF12661_consen    1 TCQCPPGWTGPN   12 (13)
T ss_dssp             EEEE-TTEETTT
T ss_pred             CccCcCCCcCCC
Confidence            488999998864

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.73  E-value=0.12  Score=36.21  Aligned_cols=43  Identities=23%  Similarity=0.551  Sum_probs=33.1

Q ss_pred             cCeecccCCceeeeEE-cCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~-~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      -+.+|+|.+++||.|. +.+.+.+.||.|+.-..    +...+|+.+|
T Consensus        43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk----kKIkREikIL   86 (338)
T KOG0668|consen   43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK----KKIKREIKIL   86 (338)
T ss_pred             HHHHcCccHhhHhcccccCCCceEEEeeechHHH----HHHHHHHHHH
Confidence            4568999999999997 35678899999977554    5566676654

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=89.41  E-value=0.35  Score=36.81  Aligned_cols=50  Identities=20%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             CccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH-HHHHHHHHHhhhC
Q 042973          103 DESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR-INQEFQKEMGIVL  152 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~-~~~~f~~E~~~ls  152 (152)
                      ...+.+|+|+||.++.-.- .+...+++|++.-..... .++.-.+|+.+||
T Consensus         7 e~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis   58 (426)
T KOG0589|consen    7 EVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLS   58 (426)
T ss_pred             hhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHH
Confidence            3356799999999874432 246689999885433222 2257788887765

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=88.74  E-value=0.77  Score=36.13  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=27.4

Q ss_pred             CeecccCCceeeeEEcCCCCEEEEEecCCcc
Q 042973          106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESD  136 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~  136 (152)
                      .-|+.-+.|.||++++++|+.||||.-+..-
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l  197 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGL  197 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcCh
Confidence            4689999999999999999999999987643

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=88.63  E-value=0.22  Score=37.13  Aligned_cols=43  Identities=33%  Similarity=0.408  Sum_probs=30.1

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      -..+|+|.||.|.+..-. .+..||+|+++......  +.-+.|+.
T Consensus        94 ~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYr--eAa~iEi~  137 (415)
T KOG0671|consen   94 VDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYR--EAALIEIE  137 (415)
T ss_pred             hhhhcCCcccceEEEeecCCCceehHHHHHHHHHHh--hHHHHHHH
Confidence            456899999999987542 26789999998766544  33344443

>PTZ00046 rifin; Provisional

Probab=88.57  E-value=0.34  Score=35.84  Aligned_cols=13  Identities=23%  Similarity=0.281  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHh
Q 042973           69 VGILIFIGCIERR   81 (152)
Q Consensus        69 ~~~~~~~~~~~~~   81 (152)
                      ++++.+++|+||+
T Consensus       331 MvIIYLILRYRRK  343 (358)
T PTZ00046        331 MVIIYLILRYRRK  343 (358)
T ss_pred             HHHHHHHHHhhhc
Confidence            3344444444444

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=88.40  E-value=0.37  Score=35.61  Aligned_cols=12  Identities=25%  Similarity=0.260  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHh
Q 042973           70 GILIFIGCIERR   81 (152)
Q Consensus        70 ~~~~~~~~~~~~   81 (152)
                      +++.+++|+||+
T Consensus       327 vIIYLILRYRRK  338 (353)
T TIGR01477       327 VIIYLILRYRRK  338 (353)
T ss_pred             HHHHHHHHhhhc
Confidence            334444444444

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=88.11  E-value=0.48  Score=34.41  Aligned_cols=12  Identities=25%  Similarity=0.229  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q 042973           69 VGILIFIGCIER   80 (152)
Q Consensus        69 ~~~~~~~~~~~~   80 (152)
                      ++++.+++++||
T Consensus       272 MvIIYLILRYRR  283 (299)
T PF02009_consen  272 MVIIYLILRYRR  283 (299)
T ss_pred             HHHHHHHHHHHH
Confidence            333333444444

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.75  E-value=0.81  Score=35.51  Aligned_cols=45  Identities=20%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||=|.|.+||.+.- .+.+-||+|+.+......  +.-+.|+++|
T Consensus        83 ~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYt--EaAlDEIklL  128 (590)
T KOG1290|consen   83 QRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYT--EAALDEIKLL  128 (590)
T ss_pred             EEeccccccceeEEEeeccCCeEEEEEEEehhhHHH--HHHHHHHHHH
Confidence            46789999999998863 456789999987654433  5667777776

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=87.35  E-value=1.4  Score=32.11  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Q 042973           62 AVIFSVIVGILIFIGCIERRKQK   84 (152)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~   84 (152)
                      +++++++++++++++...|.+++
T Consensus       262 iiaIliIVLIMvIIYLILRYRRK  284 (299)
T PF02009_consen  262 IIAILIIVLIMVIIYLILRYRRK  284 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555566666676664

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=86.52  E-value=0.6  Score=35.35  Aligned_cols=31  Identities=32%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CeecccCCceeeeEEcCC-CCEEEEEecCCcc
Q 042973          106 HFLGEGGFGSVYKGVLPD-NTQIAVKKPKESD  136 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~  136 (152)
                      ..||.|..|+||..++.+ +...|+|.+....
T Consensus        83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~  114 (459)
T KOG0610|consen   83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKES  114 (459)
T ss_pred             HHcCCCCceeEEEEEecCCCceEEEEEecHHH
Confidence            468999999999999955 3688999996543

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=86.33  E-value=0.15  Score=39.18  Aligned_cols=27  Identities=44%  Similarity=0.757  Sum_probs=21.4

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEec
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKP  132 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l  132 (152)
                      ++||+|+|.+|||+.- ...+-||||+-
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIH  496 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIH  496 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeee
Confidence            5689999999999963 34567888875

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=85.05  E-value=0.77  Score=37.85  Aligned_cols=41  Identities=29%  Similarity=0.598  Sum_probs=31.3

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      |.|.++|.... .-|  +..|.|-++++.|.|..|+.-.+ ...|
T Consensus       731 c~d~~eca~~~-~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tC  774 (1289)
T KOG1214|consen  731 CVDENECATGF-HRCGPNSVCINLPGSYRCECRSGYEFADDRHTC  774 (1289)
T ss_pred             CCChhhhccCC-CCCCCCceeecCCCceeEEEeecceeccCCcce
Confidence            99999997532 346  88999999999999988875544 3444

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=84.89  E-value=0.34  Score=38.33  Aligned_cols=47  Identities=21%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEE--ecCCc--chhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVK--KPKES--DKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK--~l~~~--~~~~~~~~f~~E~~~ls  152 (152)
                      ..+||+|+|-+||||.-. .|..||=-  +++..  +..+. +.|..|+.+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~l-eR~~~Ev~lLK   96 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEEL-ERLYSEVHLLK   96 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHH-HHHHHHHHHHc
Confidence            568999999999999752 25566522  22211  12222 77999998873

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=84.73  E-value=0.17  Score=40.53  Aligned_cols=39  Identities=28%  Similarity=0.383  Sum_probs=29.3

Q ss_pred             hhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD  136 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~  136 (152)
                      +.+.|.....+|.|.+|.|||++- ..+...|+|.++...
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep   52 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEP   52 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccC
Confidence            334555566799999999999975 457888999886543

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=84.26  E-value=1.3  Score=35.28  Aligned_cols=28  Identities=21%  Similarity=0.222  Sum_probs=15.9

Q ss_pred             eeeehhhhHHHHHHHHHHHHHHHHHHHh
Q 042973           54 TTIVAVIGAVIFSVIVGILIFIGCIERR   81 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (152)
                      +||++++++.+++++++++++++...|+
T Consensus       269 lWII~gVlvPv~vV~~Iiiil~~~LCRk  296 (684)
T PF12877_consen  269 LWIIAGVLVPVLVVLLIIIILYWKLCRK  296 (684)
T ss_pred             eEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence            6677777666665555555544444433

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=84.23  E-value=0.75  Score=40.24  Aligned_cols=33  Identities=36%  Similarity=0.957  Sum_probs=26.9

Q ss_pred             ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .+|.|-+   .||  ++.|....|+|+|.|.+||.|..
T Consensus      1238 eiDlCYs---~pC~nng~C~srEggYtCeCrpg~tGeh 1272 (2531)
T KOG4289|consen 1238 EIDLCYS---GPCGNNGRCRSREGGYTCECRPGFTGEH 1272 (2531)
T ss_pred             hhHhhhc---CCCCCCCceEEecCceeEEecCCccccc
Confidence            4566643   367  89999999999999999999865

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=83.93  E-value=2  Score=27.60  Aligned_cols=28  Identities=21%  Similarity=0.106  Sum_probs=12.3

Q ss_pred             ceeeeehhhhHHHHHHHHHHHHHHHHHH
Q 042973           52 HITTIVAVIGAVIFSVIVGILIFIGCIE   79 (152)
Q Consensus        52 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~   79 (152)
                      .+++|+++++.++.++..+++-+.++++
T Consensus        62 AIaGIVfgiVfimgvva~i~icvCmc~k   89 (155)
T PF10873_consen   62 AIAGIVFGIVFIMGVVAGIAICVCMCMK   89 (155)
T ss_pred             eeeeeehhhHHHHHHHHHHHHHHhhhhh
Confidence            3445555554444444433343444443

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=83.00  E-value=1.2  Score=30.59  Aligned_cols=12  Identities=33%  Similarity=0.290  Sum_probs=4.9

Q ss_pred             eeeehhhhHHHH
Q 042973           54 TTIVAVIGAVIF   65 (152)
Q Consensus        54 ~~ii~~~~~~~~   65 (152)
                      ..|+++++++++
T Consensus        37 ~~I~iaiVAG~~   48 (221)
T PF08374_consen   37 VKIMIAIVAGIM   48 (221)
T ss_pred             eeeeeeeecchh
Confidence            334444444333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=82.07  E-value=0.43  Score=34.46  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             ehhhhHHHHHHHHHHHHHHHHHHHh
Q 042973           57 VAVIGAVIFSVIVGILIFIGCIERR   81 (152)
Q Consensus        57 i~~~~~~~~~~~~~~~~~~~~~~~~   81 (152)
                      +.+++++++++++++++.+.++|||
T Consensus       150 IpaVVI~~iLLIA~iIa~icyrrkR  174 (290)
T PF05454_consen  150 IPAVVIAAILLIAGIIACICYRRKR  174 (290)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3334444444444444444444444

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.84  E-value=0.65  Score=35.48  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             cCeecccCCceeeeEEcCC-CCEEEEEecCC
Q 042973          105 SHFLGEGGFGSVYKGVLPD-NTQIAVKKPKE  134 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~  134 (152)
                      -.+||+|+||.|..+.-.. .+..|||+|+.
T Consensus       354 l~VlGKGSFGKVlLaerkgtdELyAiKiLkK  384 (683)
T KOG0696|consen  354 LMVLGKGSFGKVLLAERKGTDELYAIKILKK  384 (683)
T ss_pred             EEEeccCccceeeeecccCcchhhhhhhhcc
Confidence            3479999999999887532 45789999964

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=81.67  E-value=1.5  Score=35.02  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=25.3

Q ss_pred             CCccCeecccCCceeeeEEcCC-CCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~  134 (152)
                      |+....+|+|+||.|+.+.... .-.|.||.+..
T Consensus       563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~K  596 (772)
T KOG1152|consen  563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFK  596 (772)
T ss_pred             ceeeeeccccccceEEEeeecccceEEEeeehhh
Confidence            4445579999999999998844 44788998844

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.06  E-value=0.64  Score=34.41  Aligned_cols=34  Identities=29%  Similarity=0.381  Sum_probs=26.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      +|....+||+|.||.|....= ..+...|+|+|+.
T Consensus       169 dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkK  203 (516)
T KOG0690|consen  169 DFDFLKVLGKGTFGKVILCREKATGKLYAIKILKK  203 (516)
T ss_pred             hhhHHHHhcCCccceEEEEeecccCceeehhhhhh
Confidence            455567899999999986543 3477899999965

>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences

Probab=81.00  E-value=3  Score=23.72  Aligned_cols=22  Identities=14%  Similarity=0.220  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q 042973           61 GAVIFSVIVGILIFIGCIERRK   82 (152)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~   82 (152)
                      .+++++++++.+|+++.|+.+.
T Consensus         9 plivf~ifVap~WL~lHY~sk~   30 (75)
T PF06667_consen    9 PLIVFMIFVAPIWLILHYRSKW   30 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3344445555666666665543

The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock

>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]

Probab=80.92  E-value=1.6  Score=38.38  Aligned_cols=36  Identities=33%  Similarity=0.841  Sum_probs=27.3

Q ss_pred             CCc-ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            6 RVT-DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         6 ~C~-~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      ||+ --+.|..   .+|  +++|.|..|.+.|.||.|+.+.+
T Consensus      1496 GC~ark~fCds---g~C~n~g~CvnrWg~~~C~CP~~fggk~ 1534 (2531)
T KOG4289|consen 1496 GCKARKNFCDS---GQCSNGGTCVNRWGGFSCECPLGFGGKG 1534 (2531)
T ss_pred             CchhhhcccCC---CccCCCCeeecccCcEeecCccccCCcc
Confidence            354 2345543   356  78999999999999999998866

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=80.69  E-value=1.6  Score=20.60  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=15.5

Q ss_pred             CCccceeCCCCceeeCCCCCcCCCC
Q 042973           21 CEGKCKNTIGSCTCDCPIGMYGDGK   45 (152)
Q Consensus        21 c~~~C~~~~g~~~C~C~~g~~~~~~   45 (152)
                      |-..|..... ..|.|+.||..+.+
T Consensus         8 CpA~CDpn~~-~~C~CPeGyIlde~   31 (34)
T PF09064_consen    8 CPADCDPNSP-GQCFCPEGYILDEG   31 (34)
T ss_pred             CCCccCCCCC-CceeCCCceEecCC
Confidence            3345543322 38999999988763

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-07
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		4e-06
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-04
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 87  LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQK 146
           LK++   +L  A+ N+   + LG GGFG VYKG L D T +AVK+ KE        +FQ 
Sbjct: 25  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQT 84
Query: 147 EMGIV 151
           E+ ++
Sbjct: 85  EVEMI 89

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 87  LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQK 146
           LK++   +L  A+ N+   + LG GGFG VYKG L D   +AVK+ KE        +FQ 
Sbjct: 17  LKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQT 76
Query: 147 EMGIV 151
           E+ ++
Sbjct: 77  EVEMI 81

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 95  LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK 131
           L +AT N+D    +G G FG VYKGVL D  ++A+K+
Sbjct: 34  LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 95  LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK 131
           L +AT N+D    +G G FG VYKGVL D  ++A+K+
Sbjct: 34  LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-18
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-16
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-14
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-07
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-07
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	9e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	9e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	5e-05
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	8e-04
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	4e-06
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	5e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	5e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	6e-06
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	6e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	7e-06
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-06
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	7e-06
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	3e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-06
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	7e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	7e-06
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	8e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	8e-06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	9e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	9e-06
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	9e-06
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	9e-06
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-05
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	1e-05
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-05
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-05
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-05
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-05
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	1e-05
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-05
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-05
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-05
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-05
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-05
2bou_A	143	EGF-like module containing mucin-like hormone rece	4e-05
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-05
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-05
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-05
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	6e-05
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-05
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	6e-05
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	6e-05
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-05
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-04
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-04
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	9e-04
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-04
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	2e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-04
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	3e-04
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-04
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-04
1nzi_A	159	Complement C1S component; calcium, innate immunity	3e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-04
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-04
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	5e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-04
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-04
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	6e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	8e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	8e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 78.8 bits (195), Expect = 2e-18
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 95  LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           L  A+ N+   + LG GGFG VYKG L D T +AVK+ KE        +FQ E+ +
Sbjct: 25  LQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEM 80

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 73.0 bits (180), Expect = 2e-16
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 95  LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           L +AT N+D    +G G FG VYKGVL D  ++A+K+       +  +EF+ E+  
Sbjct: 34  LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS-QGIEEFETEIET 88

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 10/65 (15%)

Query: 95  LVKATKNYDE------SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQ---EFQ 145
           L   T N+DE       + +GEGGFG VYKG + +NT +AVKK      I   +   +F 
Sbjct: 20  LKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFD 78

Query: 146 KEMGI 150
           +E+ +
Sbjct: 79  QEIKV 83

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGK 45
           D+DEC +       G+C NT GS  C+CP G    G 
Sbjct: 3  VDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGN 39

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDC 48
           D DEC         G CKN IG   C C  G      + C
Sbjct: 42 VDTDECSVGN-PCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 14/37 (37%), Positives = 15/37 (40%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          TDIDEC         G+C NT G   C C  G     
Sbjct: 1  TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
           DIDEC         G C NT GS  C+CP G     
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 17/37 (45%), Positives = 17/37 (45%)

Query: 8   TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
            DIDEC         G C NT GS  C CP GM  D 
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDA 141

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          DIDEC         G CKN+ GS  C+C      D 
Sbjct: 3  DIDECE--SSPCINGVCKNSPGSFICECSSESTLDP 36

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          TD++ECLD       G C NT GS  CDCP     + 
Sbjct: 1  TDVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNP 36

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 17/37 (45%), Positives = 19/37 (51%)

Query: 8   TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
            DIDEC +       GKC NT GS  C CP G Y + 
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 156

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 4/41 (9%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDC 48
           D          + + + +   G   C   IG+       C
Sbjct: 42 VDTRSGNC----YLDIRPRGDNGDTACSNEIGVGVSKASCC 78

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 3/44 (6%), Positives = 9/44 (20%), Gaps = 1/44 (2%)

Query: 1   MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
           +S  +    + +               +     C    G   + 
Sbjct: 72  VSKASCCCSLGKAWGTPC-EMCPAVNTSEYKILCPGGEGFRPNP 114

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V+ G    +T++AVK  K+         F  E  +
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP--DAFLAEANL 61

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G FG VY+GV          T++A+K   E+  +R   EF  E  +
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 81

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G FG V+ G     T++A+K  K        + F +E  +
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQV 315

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 95  LVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKE 147
           L   +           G FG V+K     N  +AVK     DK    Q +Q E
Sbjct: 19  LYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDK----QSWQNE 66

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL---PDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V         D T    AVK  K     +    +++E+ I
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDI 86

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G+G FG VY G   D      Q A+K      +++  + F +E  +
Sbjct: 29  IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLL 75

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G FG VY G L DN       AVK       I    +F  E  I
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGII 143

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG VY+G +      P   Q+AVK   E    +   +F  E  I
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALI 127

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V K            T +AVK  KE+      ++   E  +
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNV 79

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V +              +AVK  KE      ++    E+ I
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 83

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 108 LGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKE 147
           +G G FG V+ G L  DNT +AVK  +E+    +  +F +E
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQE 162

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 41.1 bits (97), Expect = 7e-06
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIG 39
          D+DEC  K        CKN  G   C+CP G
Sbjct: 2  DVDECSLKPSICGTAVCKNIPGDFECECPEG 32

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGS--CTCDCPIG--MYGDGK 45
           DIDEC +     C   C N  G   C CD   G  +  D K
Sbjct: 43 EDIDECSEN---MCAQLCVNYPGGYTCYCDGKKGFKLAQDQK 81

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 8/51 (15%)

Query: 108 LGEGGFGSVYKGVLPD--------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V                  +AVK  K+    +   +   EM +
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEM 93

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           +GEG FG V++   P        T +AVK  KE     +  +FQ+E  +
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 103

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG VY+G +      P   Q+AVK   E    +   +F  E  I
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALI 86

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG+VYKG+           +A+K+ +E+   + N+E   E  +
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 70

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 108 LGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V              +   +AVK  K+    +   +   EM +
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEM 139

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 98  ATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
              N      +G G +G+VYKG L D   +AVK    +++    Q F  E  I
Sbjct: 11  DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR----QNFINEKNI 58

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G FG VY G L DN       AVK       I    +F  E  I
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGII 79

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 108 LGEGGFGSVYKGVL---PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +GEG FG V K  +         A+K+ KE      +++F  E+ +
Sbjct: 33  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEV 78

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVLP-----DNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V              Q+AVK  K         + +KE+ I
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEI 76

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V+      +T++AVK  K        + F  E  +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSV--EAFLAEANV 236

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G FG V+ G     T++A+K  K        + F +E  +
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQV 232

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGE  FG VYKG L           +A+K  K+  +  + +EF+ E  +
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAML 65

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
             LG G FG V  G       +AVK  KE        EF +E   
Sbjct: 14  KELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE--DEFFQEAQT 56

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 8   TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDCR 49
           TDIDEC +     C G C N  G+  C C       G+    
Sbjct: 78  TDIDECENGG--FCSGVCHNLPGTFECICGPDSALAGQ-IGT 116

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
             LG G FG V  G       +A+K  KE        EF +E  +
Sbjct: 30  KELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKV 72

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVL----PDNTQIAVK--KPKESDKIRINQEFQKEMGI 150
           LG+G FG V +G           +AVK  KP    +     +F +E+  
Sbjct: 26  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 74

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 108 LGEGGFGSVYKGVLPD--------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LGEG FG V                T++AVK  K     +   +   EM +
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEM 127

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V             + Q+AVK  KE       +    E+ +
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVL--PDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           +GEG FG V++G+   P+N  +  A+K  K      + ++F +E   
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALT 444

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 106 HFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
             +G G FG V+ G   +  ++A+K  +E       ++F +E  +
Sbjct: 14  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEV 56

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVLPD-----NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG+VYKG+           +A+K+ +E+   + N+E   E  +
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 70

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V +              +AVK  K S  +   +    E+ +
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 108 LGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FGSV +GV         +A+K  K+  +    +E  +E  I
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQI 389

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVLPD-----NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG+V+KGV           + +K  ++    +  Q     M  
Sbjct: 21  LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA 68

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 9/50 (18%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKE-SDKIRINQEFQKEMGI 150
           LGEG FG V+           D   +AVK  KE S+  R  Q+FQ+E  +
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR--QDFQREAEL 96

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 108 LGEGGFGSVYKGVLPDN----TQIAVK--KPKESDKIRINQEFQKEMGI 150
           LG+G FGSV +  L        ++AVK  K        I +EF +E   
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDI-EEFLREAAC 78

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 108 LGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FG V +             ++AVK  K +      +    E+ I
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 10/50 (20%)

Query: 108 LGEGGFGSVYKGV---LPDNTQI--AVK--KPKESDKIRINQEFQKEMGI 150
           LG+G FGSV       L DNT    AVK  +    D+ R   +FQ+E+ I
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQR---DFQREIQI 77

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 8   TDIDECLDKEKY-HCEGKCKNTIGSCTCDCPIGMYGDG 44
            D+DEC   +        C NT+GS +C C  G     
Sbjct: 94  QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 8  TDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIG 39
           DI+EC    K  C     C NT GS  C C  G
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPG 75

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKK------PKESDKIRINQEFQKEMGI 150
           +G+GGFG V+KG  + D + +A+K         E++ I   QEFQ+E+ I
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G FG V K        +A+K+ +   +    + F  E+  
Sbjct: 16  VGRGAFGVVCKAKW-RAKDVAIKQIESESER---KAFIVELRQ 54

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK---PKESDKIRINQEFQKEMGIVL 152
           T  + E   +G G FGSV+K V   D    A+K+   P         Q   +E+    
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDE--QNALREVYAHA 65

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 108 LGEGGFGSVYKGVL------PDNTQIAVKKPKE-SDKIRINQEFQKEMGI 150
           LGEG FG V+           D   +AVK  K+ +   R  ++FQ+E  +
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAAR--KDFQREAEL 70

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKI-RINQEFQKEMGI 150
           L E   G ++KG       I VK  K  D   R +++F +E   
Sbjct: 18  LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPR 60

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 108 LGEGGFGSVYKGVL---PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G FGSV +GV         +A+K  K+  +    +E  +E  I
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQI 63

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGI 150
           +GEG FG V++G+          +A+K  K      + ++F +E   
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALT 69

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 108 LGEGGFGSVYKGV---LPDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           LG+G FGSV       L DNT    AVKK +        ++F++E+ I
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEI 64

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)

Query: 9  DIDECLD-------KEKYHCEGKCKNTIGSCTCDCPIG 39
          D+DEC           +  C+  C N +G   C C  G
Sbjct: 3  DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPG 40

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 108 LGEGGFGSVYKGV---LPDNTQI--AVKKPKESDKIRINQEFQKEMGI 150
           LG+G FGSV       L DNT    AVKK +        ++F++E+ I
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH-STEEHLRDFEREIEI 95

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 108 LGEGGFGSVYKGVL----PDNTQIAVKKPKESDKIRINQEFQKE 147
           LGEG FG VY+GV      +   +AVK  K+   +   ++F  E
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSE 63

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKK---PKESDKIRINQEFQKEMGI 150
           +G GGFG VY+       ++AVK      + D  +  +  ++E  +
Sbjct: 15  IGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKL 59

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKI-RINQEFQKEMGI 150
           +G G FG+V++      + +AVK   E D       EF +E+ I
Sbjct: 45  IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAI 87

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           + Y     +G GG   V++ +       A+K    E    +    ++ E+  
Sbjct: 28  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 79

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVLPD----NTQIAVKKPK-ESDKIRINQEFQKEMGI 150
           LGEG FGSV +G L      + ++AVK  K ++   R  +EF  E   
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAAC 89

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 108 LGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G +G VY+GV    +  +AVK  KE       +EF KE  +
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAV 62

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIG 39
           DIDEC D +   C   C N  G   C C  G
Sbjct: 67 EDIDECQDPDT--CSQLCVNLEGGYKCQCEEG 96

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 35.8 bits (83), Expect = 9e-04
 Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIG 39
             +ECLD     C   C +      C CP G
Sbjct: 27 MGTNECLD-NNGGCSYVCNDLKIGYECLCPDG 57

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G  G V  G L      +  +A+K  K     R  ++F  E  I
Sbjct: 57  IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASI 103

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           + Y     +G GG   V++ +       A+K    E    +    ++ E+  
Sbjct: 56  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 107

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 98  ATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
            T+       +GEG FG V++ +  D+T +A+K         +N   QK    +L
Sbjct: 18  PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEIL 71

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIR 139
            ++ E   +G GGFG V+K     D     +K+    ++K  
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAE 52

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
            +++    +G GGFG V++     D+   A+K+ +  ++    ++  +E+  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKA 57

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G+G FG V  G      ++AVK  K        Q F  E  +
Sbjct: 29  IGKGEFGDVMLGDY-RGNKVAVKCIKNDAT---AQAFLAEASV 67

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 108 LGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKE 147
           +G G FG V  G L         +A+K  K     +  ++F  E
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 108 LGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G FG VYKG+L          +A+K  K     +   +F  E GI
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 99

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           + Y     +G GG   V++ +       A+K    E    +    ++ E+  
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 60

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1   MSPYARVTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMY-GDGKVDCR 49
            + Y   TDI+EC D     C   C N IG   C CP   +  D   +C 
Sbjct: 108 FAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 5/53 (9%)

Query: 8  TDIDECLDK----EKYHCEGKCKNTIGSCTCD-CPIGMYGDGKVDCRGFHITT 55
           D+DEC              +C NT     C  CP    G+  V        T
Sbjct: 42 EDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPDN---TQIAVKKPKE-SDKIRINQEFQKEMGI 150
           LG G FG+V KG          +AVK  K  ++   +  E   E  +
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANV 71

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 107 FLGEGGFGSVYKGVLPDNTQ-IAVKKPKESDKIRINQEFQKEMGI 150
            LG+G +G VY G    N   IA+K+  E D     Q   +E+ +
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYS-QPLHEEIAL 72

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIG--MYGDGK 45
          T  + C       C  KC+   G+  C C  G  +  DG+
Sbjct: 1  TGEENCNVNNG-GCAQKCQMIRGAVQCTCHTGYRLTEDGR 39

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
            +++    LG GGFG V++     D+   A+K+ +  ++    ++  +E+  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKA 56

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
                    +G G FG V++        Q AVK      K+R+     +E+  
Sbjct: 57  VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVK------KVRLEVFRVEELVA 103

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G FG   K    +  ++ V K          + F KE+ +
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKV 60

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 108 LGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G +G VY+GV    +  +AVK  KE       +EF KE  +
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAV 269

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G+G FG V  G      ++AVK  K        Q F  E  +
Sbjct: 201 IGKGEFGDVMLGDY-RGNKVAVKCIKNDAT---AQAFLAEASV 239

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDC 48
          +ECLD     C   C +      C CP G     +  C
Sbjct: 1  NECLDN-NGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 37

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 108 LGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G F  ++KGV            T++ +K   +      ++ F +   +
Sbjct: 16  LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK-AHRNYSESFFEAASM 65

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQ--KEM 148
           Y     +G G FG V++  L ++ ++A+KK  + DK   N+E Q  + +
Sbjct: 42  YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQ-DKRFKNRELQIMRIV 89

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKI-RINQEFQKEMGI 150
           +G+G FG VY G    + ++A++            + F++E+  
Sbjct: 41  IGKGRFGQVYHGRW--HGEVAIRLIDIERDNEDQLKAFKREVMA 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.85
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.84
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.82
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.66
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	98.53
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.52
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.5
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	98.48
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	98.48
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	98.36
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.32
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	98.29
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	98.27
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.21
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.21
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.2
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.18
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	98.13
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	98.12
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.11
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	98.1
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	98.09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	98.07
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	98.07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.04
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	98.03
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	98.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	97.99
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	97.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	97.94
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.94
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.92
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	97.92
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	97.92
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	97.92
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.9
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	97.88
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.88
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	97.88
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	97.88
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	97.87
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.87
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	97.87
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.87
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	97.87
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.86
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	97.85
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.85
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	97.84
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.82
3soc_A	322	Activin receptor type-2A; structural genomics cons	97.81
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.81
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	97.81
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	97.8
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.8
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	97.8
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.78
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.77
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.77
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	97.77
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	97.77
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.77
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.76
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	97.76
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.75
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.74
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	97.74
3niz_A	311	Rhodanese family protein; structural genomics, str	97.74
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	97.73
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	97.73
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	97.73
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	97.73
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.73
3q4u_A	301	Activin receptor type-1; structural genomics conso	97.73
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	97.73
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	97.73
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	97.72
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.72
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	97.71
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.71
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.71
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	97.7
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.7
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	97.69
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	97.69
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	97.67
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	97.67
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.67
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	97.67
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	97.66
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	97.66
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.65
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	97.65
3o0g_A	292	Cell division protein kinase 5; kinase activator c	97.65
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	97.65
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	97.64
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	97.63
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	97.62
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.62
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.62
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	97.62
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	97.62
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	97.61
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	97.61
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	97.61
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	97.6
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	97.6
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	97.6
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	97.59
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	97.58
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	97.57
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	97.57
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.56
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	97.56
3uqc_A	286	Probable conserved transmembrane protein; structur	97.56
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.56
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	97.56
3rp9_A	458	Mitogen-activated protein kinase; structural genom	97.55
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.55
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	97.55
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.54
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.54
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.53
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.53
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.52
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.52
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.52
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	97.51
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.51
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	97.51
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.5
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.5
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	97.49
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	97.49
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.48
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	97.48
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.48
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.47
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	97.47
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	97.47
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.47
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	97.46
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	97.46
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.46
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	97.45
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	97.45
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	97.45
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.45
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	97.45
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.44
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.44
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	97.43
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.43
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	97.43
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	97.43
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	97.42
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	97.42
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	97.41
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	97.41
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	97.41
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.41
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	97.41
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.41
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.4
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.4
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.39
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	97.39
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	97.38
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.38
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.38
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	97.37
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	97.37
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	97.37
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	97.37
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	97.37
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.36
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	97.36
3fme_A	290	Dual specificity mitogen-activated protein kinase;	97.35
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.35
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	97.34
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.34
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	97.33
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	97.33
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	97.33
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.33
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.33
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.33
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	97.33
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.32
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	97.32
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	97.32
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	97.31
2bou_A	143	EGF-like module containing mucin-like hormone rece	97.31
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.31
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.3
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.3
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	97.3
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	97.29
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.29
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.29
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	97.29
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.29
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.29
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	97.28
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	97.28
2a19_B	284	Interferon-induced, double-stranded RNA-activated	97.27
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	97.27
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	97.26
3bhy_A	283	Death-associated protein kinase 3; death associate	97.26
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	97.25
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.25
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.24
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	97.24
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	97.24
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	97.24
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.24
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	97.24
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	97.24
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	97.22
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	97.22
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	97.22
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	97.22
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	97.21
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	97.21
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	97.2
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.2
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	97.19
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	97.19
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	97.19
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	97.16
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	97.16
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.16
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	97.16
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	97.14
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	97.14
2bou_A	143	EGF-like module containing mucin-like hormone rece	97.13
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.12
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	97.12
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	97.11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.11
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	97.11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	97.1
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	97.1
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	97.09
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	97.09
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	97.09
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	97.08
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	97.08
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.08
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	97.07
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	97.07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	97.07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	97.05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	97.05
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.04
1nzi_A	159	Complement C1S component; calcium, innate immunity	97.03
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	97.02
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.02
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	96.99
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	96.98
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.97
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	96.97
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	96.94
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	96.92
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.92
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	96.92
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	96.89
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	96.89
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	96.88
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	96.87
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	96.82
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	96.81
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	96.79
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.77
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	96.77
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	96.71
1szb_A	170	Mannose binding lectin-associated serine protease-	96.7
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.68
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.61
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	96.61
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	96.61
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.6
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	96.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.55
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	96.53
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	96.53
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	96.49
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	96.48
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.45
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	96.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.35
2vh0_B	134	Activated factor XA light chain; serine protease,	96.3
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	96.3
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	96.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.09
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.01
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.94
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.92
2vh0_B	134	Activated factor XA light chain; serine protease,	95.9
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	95.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.81
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	95.7
2wph_E	59	Coagulation factor IXA light chain; serine proteas	95.56
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.43
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.42
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.29
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	95.08
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	95.07
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	94.84
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	94.69
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	94.48
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	94.4
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	94.21
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	94.16
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	93.88
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	93.84
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	93.16
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	93.14
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	93.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.09
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	92.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.5
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	92.42
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	92.25
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	92.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	91.93
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	91.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	88.42
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	87.33
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	84.82
2rdd_B	37	UPF0092 membrane protein YAJC; drug resistance, mu	84.29
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	83.96
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	83.95
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	83.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	83.54
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	83.47
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	83.31
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	81.65
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	81.59
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.33
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	80.28

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.85  E-value=5.7e-10  Score=79.55  Aligned_cols=48  Identities=33%  Similarity=0.488  Sum_probs=36.9

Q ss_pred             cCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|+||+||+|.+.      +++.||||+++........++|.+|+.+|+
T Consensus        31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~   84 (308)
T 4gt4_A           31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRA   84 (308)
T ss_dssp             EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHH
T ss_pred             eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHH
Confidence            457999999999999973      357899999976554444488999998873

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.84  E-value=2.5e-09  Score=76.92  Aligned_cols=51  Identities=33%  Similarity=0.454  Sum_probs=41.0

Q ss_pred             CCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||+|.+.      ++..||||+++..+.... ++|.+|+++|+
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~-~~f~~E~~il~   98 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR-QDFQREAELLT   98 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHH-HHHHHHHHHHT
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHH-HHHHHHHHHHH
Confidence            3444678999999999999874      367899999987665555 88999999875

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.82  E-value=3.3e-09  Score=75.34  Aligned_cols=51  Identities=29%  Similarity=0.429  Sum_probs=39.1

Q ss_pred             CCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++...+.||+|+||+||+|.+.      ++..||||+++..+.... ++|.+|+++|+
T Consensus        14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~-~~f~~E~~il~   70 (299)
T 4asz_A           14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR-KDFHREAELLT   70 (299)
T ss_dssp             GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHH-HHHHHHHHHHT
T ss_pred             HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHH-HHHHHHHHHHH
Confidence            4445678999999999999874      367899999987665555 88999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.66  E-value=9.6e-09  Score=74.52  Aligned_cols=59  Identities=24%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|+...++|...+.||+|+||.||+|.+..      +..||||+++........++|.+|+.+|
T Consensus        57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il  121 (353)
T 4ase_A           57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL  121 (353)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHH
Confidence            4455556667777889999999999998632      3479999997765554447899999876

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=98.53  E-value=5.2e-08  Score=69.36  Aligned_cols=65  Identities=40%  Similarity=0.671  Sum_probs=51.5

Q ss_pred             hHhhhHHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           87 LKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+++.++...+++|...+.||+|+||.||++...++..||||.++..........|.+|+.+|
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l   81 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMI   81 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGG
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHH
Confidence            34578889999999999999999999999999998889999999997654433225788888765

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.52  E-value=6.8e-08  Score=68.79  Aligned_cols=55  Identities=31%  Similarity=0.395  Sum_probs=40.6

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      +...+.+...+.||+|+||+||+|.+.+  .||||.++.... ....++|.+|+.+|+
T Consensus        32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~   87 (307)
T 3omv_A           32 EIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLR   87 (307)
T ss_dssp             BCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHT
T ss_pred             EEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence            3334556667789999999999999853  699999964432 222378999999875

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.50  E-value=9.2e-08  Score=67.94  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=28.5

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcc
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESD  136 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~  136 (152)
                      +...+.||+|+||+||+|.+ .|+.||||+++...
T Consensus         5 i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~   38 (303)
T 3hmm_A            5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE   38 (303)
T ss_dssp             EEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG
T ss_pred             EEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc
Confidence            34467899999999999999 68999999996543

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=98.48  E-value=8.3e-08  Score=68.24  Aligned_cols=62  Identities=35%  Similarity=0.631  Sum_probs=50.3

Q ss_pred             hhhHHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           89 KWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        89 ~~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+++.++...+++|...+.||+|+||.||++...++..||||.+........ +.|.+|+.+|
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   89 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGI-EEFETEIETL   89 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHH-HHHHHHHHGG
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHH-HHHHHHHHHH
Confidence            3555667778888988899999999999999998899999999876655444 7899998876

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=98.48  E-value=8.8e-08  Score=67.96  Aligned_cols=51  Identities=22%  Similarity=0.459  Sum_probs=38.2

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      |...+.||+|+||.||++.. .++..||||+++..+.....+.|.+|+.+|+
T Consensus         7 y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~   58 (299)
T 4g31_A            7 FEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALA   58 (299)
T ss_dssp             EEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHH
Confidence            55567899999999999986 4688999999965444433378999998874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=98.36  E-value=9.3e-07  Score=62.24  Aligned_cols=64  Identities=38%  Similarity=0.660  Sum_probs=50.9

Q ss_pred             hHhhhHHHHHHhhhCCCcc------CeecccCCceeeeEEcCCCCEEEEEecCCcc---hhHHHHHHHHHHhhh
Q 042973           87 LKKWCAAKLVKATKNYDES------HFLGEGGFGSVYKGVLPDNTQIAVKKPKESD---KIRINQEFQKEMGIV  151 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~------~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~---~~~~~~~f~~E~~~l  151 (152)
                      ...+++.++..++.+|...      +.||+|+||.||++.. ++..||||.+....   .....+.|.+|+.+|
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l   84 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVM   84 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHH
Confidence            3457889999999999887      8899999999999998 68899999985432   122237788888765

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.32  E-value=5.4e-07  Score=64.21  Aligned_cols=64  Identities=22%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             HhhhHHHHHHhhhC----------CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           88 KKWCAAKLVKATKN----------YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        88 ~~~~~~~l~~~~~~----------~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ..++++++..+++.          |...+.||+|+||.||++... +|..||||.++....... +.|.+|+.+|.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~-~~~~~E~~~l~   97 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRR-ELLFNEVVIMR   97 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSH-HHHHHHHHHHT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHH-HHHHHHHHHHH
Confidence            45677777777764          333457999999999999875 689999999965444333 77889987763

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=98.29  E-value=4.1e-07  Score=47.62  Aligned_cols=42  Identities=29%  Similarity=0.744  Sum_probs=33.1

Q ss_pred             cccccccCCC-------CCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            8 TDIDECLDKE-------KYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         8 ~~~~~C~~~~-------~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|++||....       ..+|...|.|..|+|.|.|+.||.+.. ...|.
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccC
Confidence            5789997532       257988999999999999999998765 45553

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=98.27  E-value=3.9e-07  Score=65.91  Aligned_cols=50  Identities=26%  Similarity=0.274  Sum_probs=38.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .+|..||||+++....... +.|.+|+.+|
T Consensus        75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~-~~~~~Ei~il  125 (346)
T 4fih_A           75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRR-ELLFNEVVIM  125 (346)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSG-GGGHHHHHHH
T ss_pred             hcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHH-HHHHHHHHHH
Confidence            355566799999999999987 4589999999965443333 6788898876

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.21  E-value=1.3e-06  Score=61.76  Aligned_cols=48  Identities=23%  Similarity=0.384  Sum_probs=36.2

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~ls  152 (152)
                      ...||+|+||.||+|.. ..+..||+|.+.... .....+.|.+|+.+|+
T Consensus        31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~   80 (290)
T 3fpq_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK   80 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHH
T ss_pred             eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHH
Confidence            44699999999999987 447899999995432 2222378999998873

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.21  E-value=1.3e-06  Score=63.31  Aligned_cols=51  Identities=24%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .+|+.||||.++... .....+.|.+|+.+|
T Consensus        25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il   77 (350)
T 4b9d_A           25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVL   77 (350)
T ss_dssp             CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHH
Confidence            344556799999999999985 568999999995432 222237899999886

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.20  E-value=8.4e-07  Score=65.78  Aligned_cols=50  Identities=26%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. ..|..||||+++....... +.|.+|+.+|
T Consensus       152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~-~~~~~Ei~il  202 (423)
T 4fie_A          152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRR-ELLFNEVVIM  202 (423)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSG-GGHHHHHHHH
T ss_pred             hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHH-HHHHHHHHHH
Confidence            455567899999999999986 4589999999965443333 6788999876

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.18  E-value=5.2e-07  Score=67.35  Aligned_cols=58  Identities=22%  Similarity=0.342  Sum_probs=45.6

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++++...+.|...+.||+|+||.||+|.+.++..||||.++..... . ++|.+|+.+|+
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l~  238 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-V-EAFLAEANVMK  238 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBC-H-HHHHHHHHHHT
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCcc-H-HHHHHHHHHHh
Confidence            4455555666667889999999999999988889999999764432 2 78999998774

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=98.13  E-value=2.7e-06  Score=61.96  Aligned_cols=52  Identities=27%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             CCCccCeecccCCceeeeEEcC----CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||+|...    .+..||||.++........++|.+|+.+|+
T Consensus        46 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~  101 (373)
T 2qol_A           46 NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMG  101 (373)
T ss_dssp             GCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHT
T ss_pred             hceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHH
Confidence            4566778999999999999874    467899999976544333378999998764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=98.12  E-value=1.2e-06  Score=62.98  Aligned_cols=62  Identities=24%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+++...+.|...+.||+|+||.||++.+      .++..||||.++........+.|.+|+.+|
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   79 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL   79 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHH
Confidence            34455666677787788999999999999974      345789999997654444337799998775

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.11  E-value=2.1e-06  Score=60.90  Aligned_cols=52  Identities=19%  Similarity=0.464  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++... ++..||||+++........+.|.+|+.+|+
T Consensus         7 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~   59 (332)
T 3qd2_B            7 DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALA   59 (332)
T ss_dssp             HEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHT
T ss_pred             cCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHH
Confidence            3555678999999999999974 688999999965443333378999998764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=98.10  E-value=3.7e-06  Score=61.94  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=38.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.- ..|..||||+++.... ....+.+.+|+.+|
T Consensus        55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il  107 (398)
T 4b99_A           55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKIL  107 (398)
T ss_dssp             SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHH
Confidence            455567899999999999985 5689999999964322 22226788999876

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=98.09  E-value=2.2e-06  Score=60.07  Aligned_cols=52  Identities=23%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||+||++.- .+++.||||.++....  ......|.+|+.+|
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il   67 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL   67 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHH
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHH
Confidence            3566677899999999999986 4589999999954322  22226799999876

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=98.07  E-value=9.2e-07  Score=64.41  Aligned_cols=58  Identities=31%  Similarity=0.453  Sum_probs=43.3

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++...++|...+.||+|+||.||+|.+. ++..||||.++........++|.+|+.+|+
T Consensus       109 ~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~  167 (377)
T 3cbl_A          109 WVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILK  167 (377)
T ss_dssp             TBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHT
T ss_pred             cEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHH
Confidence            3334455666778999999999999985 688999999976544333367888988763

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=98.07  E-value=1.1e-06  Score=61.13  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++++...+.|...+.||+|+||.||++...++..||+|.++..... . +.|.+|+.+|
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l   62 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS-P-DAFLAEANLM   62 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSC-H-HHHHHHHHHH
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCccc-H-HHHHHHHHHH
Confidence            4455555666667889999999999999987889999999754432 2 6788888765

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.04  E-value=1.9e-06  Score=64.27  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=43.1

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++...+.|...+.||+|+||.||+|.+.++..||||.++..... . ++|.+|+.+|
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l  233 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-P-EAFLQEAQVM  233 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-H-HHHHHHHHHH
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCC-H-HHHHHHHHHH
Confidence            344444556666789999999999999987788999999764432 2 7899999876

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=98.03  E-value=2.4e-06  Score=60.87  Aligned_cols=52  Identities=17%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++.- .+++.||||.++....  ....+.+.+|+.+|+
T Consensus        33 dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~   87 (311)
T 4aw0_A           33 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS   87 (311)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHH
Confidence            465667899999999999985 5688999999954321  111267999998874

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=98.00  E-value=5.9e-06  Score=58.91  Aligned_cols=48  Identities=27%  Similarity=0.396  Sum_probs=37.2

Q ss_pred             cCeecccCCceeeeEEcC----CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLP----DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|+||.||+|...    .+..||||.++........++|.+|+.+|+
T Consensus        54 ~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~  105 (325)
T 3kul_A           54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMG  105 (325)
T ss_dssp             EEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred             eeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999973    344699999976544444478999998763

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.00  E-value=1.9e-06  Score=65.68  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=43.2

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++...+.|...+.||+|+||.||+|.+.++..||||+++..... . ++|.+|+.+|
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l  316 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-P-EAFLQEAQVM  316 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSC-H-HHHHHHHHHH
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCC-H-HHHHHHHHHH
Confidence            344444556667789999999999999987788999999764432 2 7899999876

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=97.99  E-value=7.8e-06  Score=57.64  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++.. .++..||+|.+...+.... +.|.+|+.+|.
T Consensus        11 ~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~-~~~~~E~~~l~   62 (310)
T 3s95_A           11 DLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQ-RTFLKEVKVMR   62 (310)
T ss_dssp             GEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHH-HHHHHHHHHHT
T ss_pred             HeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHH-HHHHHHHHHHH
Confidence            455567899999999999987 4588999999876655555 88999998763

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=97.97  E-value=5e-06  Score=61.90  Aligned_cols=60  Identities=17%  Similarity=0.324  Sum_probs=42.4

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      +.++...+++|...+.||+|+||.||++...+ +..||+|.++......  ....|.+|..+|
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il  128 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL  128 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHH
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHH
Confidence            44555566788888899999999999999854 6789999996432211  113377776654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=97.94  E-value=6.9e-06  Score=58.59  Aligned_cols=57  Identities=32%  Similarity=0.499  Sum_probs=43.0

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +....++|...+.||+|+||.||++...      .+..||+|.++........+.|.+|+.+|
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  104 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM  104 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHH
Confidence            3444566777788999999999999874      24789999997654444347899998776

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.94  E-value=2.1e-06  Score=60.78  Aligned_cols=61  Identities=31%  Similarity=0.491  Sum_probs=45.6

Q ss_pred             hHHHHHHhhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           91 CAAKLVKATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        91 ~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..++++...+.|...+.||+|+||.||++...      .+..||+|.++..........|.+|+.+|
T Consensus        16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   82 (322)
T 1p4o_A           16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM   82 (322)
T ss_dssp             CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHG
T ss_pred             ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHH
Confidence            34455556667777788999999999999763      25789999997654444337799998876

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.92  E-value=8.6e-06  Score=46.53  Aligned_cols=36  Identities=39%  Similarity=0.789  Sum_probs=25.0

Q ss_pred             CcccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+++++|...  .+| +++|.|..++|.|.|+.||.+++
T Consensus        41 C~dideC~~~--~~C~~~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           41 CVDTDECSVG--NPCGNGTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             EEECCGGGTC--CTTSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             cCCcccccCC--CCCCCCEeECCCCCEEeECCCCeEeCC
Confidence            7777777532  356 46777777777777777777655

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=97.92  E-value=9.9e-06  Score=58.34  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchh----------HHHHHHHHHHhhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKI----------RINQEFQKEMGIV  151 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~----------~~~~~f~~E~~~l  151 (152)
                      ....++......|...+.||+|+||.||++...++..||||++......          ...+.|.+|+.+|
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   83 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLL   83 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHH
Confidence            3456777788889888999999999999999878999999998542211          1126788888765

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.92  E-value=8.1e-06  Score=56.35  Aligned_cols=50  Identities=22%  Similarity=0.379  Sum_probs=39.4

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++...++..||+|+++......  ++|.+|+.+|
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~E~~~l   59 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEVM   59 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCH--HHHHHHHHHH
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCH--HHHHHHHHHH
Confidence            3455567899999999999999888899999997544332  6788888765

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=97.92  E-value=1e-05  Score=56.62  Aligned_cols=50  Identities=30%  Similarity=0.453  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.+     ..+..||||+++....... +.|.+|+.+|
T Consensus        11 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   65 (295)
T 3ugc_A           11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL-RDFEREIEIL   65 (295)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHH-HHHHHHHHHH
T ss_pred             HhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHH-HHHHHHHHHH
Confidence            344457899999999999985     3578999999987665554 7899998775

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.90  E-value=2.7e-06  Score=64.16  Aligned_cols=54  Identities=33%  Similarity=0.529  Sum_probs=41.1

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.....|...+.||+|+||.||+|.+.. +..||||.++..... . ++|.+|+.+|
T Consensus       216 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l  270 (495)
T 1opk_A          216 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-V-EEFLKEAAVM  270 (495)
T ss_dssp             BCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC-H-HHHHHHHHHH
T ss_pred             ccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc-h-HHHHHHHHHH
Confidence            3334455556789999999999999854 788999999764433 2 7899999876

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=97.88  E-value=7.4e-06  Score=57.66  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...+.|...+.||+|+||.||++..      ..+..||+|.++........+.|.+|+.+|
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   80 (313)
T 1t46_A           19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL   80 (313)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHH
Confidence            33445566677899999999999985      346789999997655444347888998765

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.88  E-value=1.2e-05  Score=61.90  Aligned_cols=50  Identities=24%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.- ..|..||+|.++....... +.+.+|+.+|
T Consensus       158 ~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~-~~~~~Ei~il  208 (573)
T 3uto_A          158 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDK-ETVRKEIQTM  208 (573)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHH-HHHHHHHHHH
T ss_pred             ccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhH-HHHHHHHHHH
Confidence            455567899999999999986 4588999999976554444 7788999876

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=97.88  E-value=7.7e-06  Score=57.64  Aligned_cols=60  Identities=25%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..++....+.|...+.||+|+||.||++..      .++..||||.++........+.|.+|+.+|
T Consensus        19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   84 (316)
T 2xir_A           19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL   84 (316)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHH
Confidence            334444556676778899999999999974      346789999997655444336788888765

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=97.88  E-value=1.3e-05  Score=58.30  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             HhhhCCCccCeecccCCceeeeEEc----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           97 KATKNYDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        97 ~~~~~~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.|...+.||+|+||.||+++-    ..+..||+|.+......   ..+.+|+.+|
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~---~~~~~E~~~l   73 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHP---IRIAAELQCL   73 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCH---HHHHHHHHHH
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCH---HHHHHHHHHH
Confidence            3445677778999999999999963    23568999998654332   5577787665

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=97.87  E-value=6.2e-06  Score=58.06  Aligned_cols=57  Identities=30%  Similarity=0.326  Sum_probs=41.6

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .....+|...+.||+|+||.||++..      .++..||+|.++........+.|.+|+.+|.
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~   81 (314)
T 2ivs_A           19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLK   81 (314)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHT
T ss_pred             ccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHh
Confidence            33445565667899999999999975      2357899999976544433378899988763

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.87  E-value=6.3e-06  Score=61.44  Aligned_cols=52  Identities=27%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +...++|...+.||+|+||.||+|.+ .+..||||.++...  .. ++|.+|+.+|
T Consensus       189 ~i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~-~~~~~E~~~l  240 (450)
T 1k9a_A          189 ALNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TA-QAFLAEASVM  240 (450)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TS-HHHHHHHHHH
T ss_pred             ccChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HH-HHHHHHHHHH
Confidence            33445566667899999999999998 47899999997644  22 7899999876

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=97.87  E-value=1.2e-05  Score=58.33  Aligned_cols=52  Identities=25%  Similarity=0.328  Sum_probs=38.7

Q ss_pred             hCCCccCeecccCCceeeeEEc--------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~--------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++..        ..+..||||.++........++|.+|+.+|
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  140 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM  140 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHH
Confidence            4455567899999999999975        234579999997654443337899998776

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.87  E-value=1.2e-05  Score=39.15  Aligned_cols=34  Identities=41%  Similarity=0.911  Sum_probs=27.9

Q ss_pred             cccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +++++|..   .||  +++|.+..++|.|.|+.||.+..
T Consensus         1 ~d~d~C~~---~pC~ngg~C~~~~~~~~C~C~~G~~G~~   36 (39)
T 1edm_B            1 VDGDQCES---NPCLNGGSCKDDINSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCCTTTT---CCCCTTCEEEEETTEEEEECCTTCCSTT
T ss_pred             CccccCCC---CCCCCCCEeEcCCCceEeECCCCCcCCc
Confidence            36788863   478  68999999999999999998764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=97.87  E-value=6.6e-06  Score=58.27  Aligned_cols=57  Identities=25%  Similarity=0.340  Sum_probs=41.1

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ++.....+|...+.||+|+||.||++.. .+..||||.+..... ....++|.+|+.+|
T Consensus        31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   88 (309)
T 3p86_A           31 DMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIM   88 (309)
T ss_dssp             -CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHH
T ss_pred             cccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            3333444555567899999999999998 688999999965432 22226789998775

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.86  E-value=4.5e-06  Score=61.53  Aligned_cols=52  Identities=10%  Similarity=0.091  Sum_probs=37.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHH--HHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRI--NQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~--~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .+|..||||+++.......  .+.|.+|+.++
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~  132 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL  132 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGG
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHH
Confidence            3455567899999999999994 5689999999874333221  26788887654

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=97.85  E-value=6.5e-06  Score=56.76  Aligned_cols=50  Identities=30%  Similarity=0.342  Sum_probs=39.2

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++...++..||+|.++......  ++|.+|+.+|
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~E~~~l   57 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSE--DEFFQEAQTM   57 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCH--HHHHHHHHHH
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcH--HHHHHHHHHH
Confidence            3455567899999999999999888899999997544332  6788888765

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.85  E-value=3.3e-05  Score=54.14  Aligned_cols=51  Identities=16%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchh-----------------HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKI-----------------RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~-----------------~~~~~f~~E~~~l  151 (152)
                      .+...+.||+|+||.||++..++|..||+|.++.....                 .....|.+|+.+|
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l  158 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRAL  158 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence            33345789999999999999977899999999643221                 1226788888776

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=97.84  E-value=1.1e-05  Score=56.07  Aligned_cols=50  Identities=30%  Similarity=0.382  Sum_probs=36.5

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++...++..||+|.++......  ++|.+|+.+|
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~E~~~l   73 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKVM   73 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCH--HHHHHHHHHH
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCH--HHHHHHHHHH
Confidence            4455567899999999999999888899999997644332  6788888765

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.82  E-value=1.5e-05  Score=57.86  Aligned_cols=51  Identities=33%  Similarity=0.406  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.+.      .+..||||+++.........+|.+|+.+|
T Consensus        72 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  128 (367)
T 3l9p_A           72 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII  128 (367)
T ss_dssp             GEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             HeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHH
Confidence            4445678999999999999963      35589999997654444337888998765

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=97.81  E-value=1.5e-05  Score=56.71  Aligned_cols=49  Identities=27%  Similarity=0.215  Sum_probs=36.6

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++... +..||||+++......  ..+..|+.+|
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~--~~~~~E~~~l   72 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQS--WQNEYEVYSL   72 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHH--HHHHHHHHTS
T ss_pred             hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHH--HHHHHHHHHH
Confidence            34555678999999999999984 7899999996544332  5566677655

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.81  E-value=1.4e-05  Score=56.63  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             CCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.... +..||||.++........+.+.+|+.+|
T Consensus        11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   61 (319)
T 4euu_A           11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL   61 (319)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH
Confidence            4456789999999999998744 8899999997544333236788888765

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=97.81  E-value=1.7e-05  Score=57.71  Aligned_cols=47  Identities=26%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|+||.||++.. .++..||+|.++....... ++|.+|+.+|.
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~-~~~~~E~~~l~  141 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDK-EEVKNEISVMN  141 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHH-HHHHHHHHHHT
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccH-HHHHHHHHHHH
Confidence            45799999999999986 4588999999976554444 78999998763

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=97.80  E-value=2.4e-05  Score=53.81  Aligned_cols=51  Identities=25%  Similarity=0.285  Sum_probs=39.0

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++.. .+..||||.++.... ....+.|.+|+.+|+
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~   62 (271)
T 3kmu_A           11 QLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLR   62 (271)
T ss_dssp             GCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGC
T ss_pred             HhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            455567899999999999998 588999999965432 222278999998764

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.80  E-value=2.6e-05  Score=40.65  Aligned_cols=36  Identities=33%  Similarity=0.714  Sum_probs=29.0

Q ss_pred             ccccccCCCCCCC--Cccce--eCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC--EGKCK--NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~--~~~g~~~C~C~~g~~~~~   44 (152)
                      ++++|......||  +++|.  +..++|.|.|+.||.+..
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   41 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDR   41 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCc
Confidence            6788875434589  58999  788999999999998865

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=97.80  E-value=1.4e-05  Score=56.94  Aligned_cols=52  Identities=25%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEcC--------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP--------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++...        ++..||+|.++........+.|.+|+.+|
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   94 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM   94 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHH
Confidence            44555678999999999999862        46789999997654433337788888765

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.78  E-value=2.6e-06  Score=51.26  Aligned_cols=34  Identities=29%  Similarity=0.624  Sum_probs=18.1

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      | ++++|..... +|..+|.+..++|.|.|+.||.+
T Consensus        27 C-d~neC~~~~~-~C~~~C~n~~g~y~C~C~~Gy~g   60 (107)
T 2w2n_E           27 M-GTNECLDNNG-GCSYVCNDLKIGYECLCPDGFQL   60 (107)
T ss_dssp             B-SCCGGGTGGG-GCSSEEECCSBSCEEECCTTCEE
T ss_pred             C-cCccCcCCCC-CCCCEeEeCCCCeEEECCCCccc
Confidence            5 4555654321 34455665555566666666554

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.77  E-value=8.4e-06  Score=46.98  Aligned_cols=41  Identities=41%  Similarity=0.815  Sum_probs=32.9

Q ss_pred             CcccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            7 VTDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         7 C~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      |++++||... ..+| +++|.|..++|.|.|+.||.+.. ...|
T Consensus        43 C~dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~C   85 (86)
T 1lmj_A           43 CMDIDECQRD-PLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC   85 (86)
T ss_dssp             EEECCHHHHC-SSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             cCCcccccCC-CCcCCCCEeEcCCCCEEEECcCCcccCCCCCcc
Confidence            9999999742 2347 58999999999999999999876 3444

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.77  E-value=2.8e-05  Score=56.89  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=38.4

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++....+..||||.++... .....+.|.+|+.+|
T Consensus        58 y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l  108 (390)
T 2zmd_A           58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL  108 (390)
T ss_dssp             EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHH
Confidence            55567899999999999998778999999985432 222227889998775

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=97.77  E-value=8.5e-06  Score=56.72  Aligned_cols=56  Identities=34%  Similarity=0.525  Sum_probs=42.1

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++...++|...+.||+|+||.||++.... +..||+|.++..... . +.|.+|+.+|
T Consensus         7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~-~~~~~E~~~l   63 (288)
T 3kfa_A            7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-V-EEFLKEAAVM   63 (288)
T ss_dssp             TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTH-H-HHHHHHHHHH
T ss_pred             cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHH-H-HHHHHHHHHH
Confidence            444455566667889999999999999854 778999999754433 2 6788888765

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=97.77  E-value=2.5e-05  Score=56.01  Aligned_cols=51  Identities=16%  Similarity=0.260  Sum_probs=38.8

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++...++..||||.++.... ....+.|.+|+.+|
T Consensus        10 ~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   61 (343)
T 3dbq_A           10 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL   61 (343)
T ss_dssp             EEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHH
Confidence            3555678999999999999988899999999854322 22227788888765

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.77  E-value=1.2e-05  Score=56.96  Aligned_cols=56  Identities=29%  Similarity=0.465  Sum_probs=35.7

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCCCC----EEEEEecCCc--chhHHHHHHHHHHhhhC
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPDNT----QIAVKKPKES--DKIRINQEFQKEMGIVL  152 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~----~vavK~l~~~--~~~~~~~~f~~E~~~ls  152 (152)
                      ......|...+.||+|+||.||++......    .||||.++..  ..... +.|.+|+.+|+
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~-~~~~~E~~~l~   80 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDI-EEFLREAACMK   80 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHH-HHHHHHHHHHT
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHH-HHHHHHHHHHH
Confidence            334456766788999999999999874432    7999999654  22233 78999988763

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.76  E-value=4.4e-05  Score=53.18  Aligned_cols=49  Identities=29%  Similarity=0.474  Sum_probs=36.3

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +....+||+|+||.||++.. .++..||+|.++....... +.|.+|+.++
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l   73 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYS-QPLHEEIALH   73 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC----HHHHHHHHHH
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHH-HHHHHHHHHH
Confidence            33345899999999999986 5578999999976554433 7788888765

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=97.76  E-value=1.9e-05  Score=56.04  Aligned_cols=53  Identities=21%  Similarity=0.382  Sum_probs=28.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +.|...+.||+|+||.||++.. .++..||+|.++........+.+.+|+.+|.
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~   58 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMK   58 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHT
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHH
Confidence            3455567899999999999987 3588999999865433322267888887763

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.75  E-value=3e-05  Score=55.52  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||||.++..........+.+|+.+|
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   63 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKIL   63 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHH
Confidence            45666778999999999999874 58899999997544433336788888765

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.74  E-value=2.5e-05  Score=39.45  Aligned_cols=36  Identities=25%  Similarity=0.629  Sum_probs=28.6

Q ss_pred             ccccccCCCCCCC-CccceeCC--CCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC-EGKCKNTI--GSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c-~~~C~~~~--g~~~C~C~~g~~~~~   44 (152)
                      ++++|......|| +|+|.+..  ++|.|.|+.||.|..
T Consensus         2 ~i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~GytG~~   40 (46)
T 1k36_A            2 SITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVR   40 (46)
T ss_dssp             CEECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTT
T ss_pred             ccccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCccCC
Confidence            5678875444689 88999754  689999999999876

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=97.74  E-value=3.1e-05  Score=54.90  Aligned_cols=49  Identities=27%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             CccCeecccCCceeeeEEcC-----CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          103 DESHFLGEGGFGSVYKGVLP-----DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       103 ~~~~~ig~g~~g~Vy~g~~~-----~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ...+.||+|+||.||++.+.     ++..||||.++........+.|.+|+.+|
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   87 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDIL   87 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHH
Confidence            34567999999999988762     57789999997654433337789998775

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=97.74  E-value=2.2e-05  Score=55.56  Aligned_cols=51  Identities=24%  Similarity=0.419  Sum_probs=36.8

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++...++..||+|+++...... ....+.+|+.+|
T Consensus        22 ~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   73 (311)
T 3niz_A           22 KYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLL   73 (311)
T ss_dssp             EEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHH
T ss_pred             hhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHH
Confidence            444567899999999999998889999999996443221 226788888765

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=97.73  E-value=2.4e-05  Score=54.60  Aligned_cols=50  Identities=28%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++....+..||+|+++...... ..+.+.+|+.+|
T Consensus         4 y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l   54 (288)
T 1ob3_A            4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISIL   54 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGG
T ss_pred             chhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHH
Confidence            44457899999999999998778999999986443221 126788898776

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=97.73  E-value=2.7e-05  Score=55.29  Aligned_cols=50  Identities=30%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.+     ..+..||||.++....... +.|.+|+.+|
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   78 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQ-RDFQREIQIL   78 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHH-HHHHHHHHHH
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHH-HHHHHHHHHH
Confidence            344466899999999999984     4577899999977655554 7799998775

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.73  E-value=4.3e-05  Score=53.21  Aligned_cols=46  Identities=33%  Similarity=0.453  Sum_probs=36.0

Q ss_pred             CeecccCCceeeeEEcC---CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..||+|+||.||++...   .+..||+|.++........+.|.+|+.+|
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   64 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIM   64 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHH
Confidence            37999999999999863   46789999997654443337899998775

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.73  E-value=1.3e-05  Score=55.13  Aligned_cols=50  Identities=22%  Similarity=0.379  Sum_probs=39.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++...++..||+|.++......  ++|.+|+.++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~--~~~~~e~~~l   57 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEVM   57 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCH--HHHHHHHHHH
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCH--HHHHHHHHHH
Confidence            3455567899999999999999888899999997644332  6788888765

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.73  E-value=2.3e-05  Score=60.67  Aligned_cols=46  Identities=33%  Similarity=0.455  Sum_probs=35.9

Q ss_pred             eecccCCceeeeEEcC---CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          107 FLGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       107 ~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .||+|+||.||+|.+.   .+..||||.++........++|.+|+.+|.
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~  391 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH  391 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHT
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHH
Confidence            5899999999999873   456799999976543333388999998874

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=97.73  E-value=2.8e-05  Score=54.36  Aligned_cols=45  Identities=22%  Similarity=0.466  Sum_probs=33.8

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      ++|...+.||+|+||.||++.. ++..||||.++....    ..+..|.+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~----~~~~~e~~   52 (301)
T 3q4u_A            8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE----KSWFRETE   52 (301)
T ss_dssp             GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGH----HHHHHHHH
T ss_pred             CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccc----hhhHHHHH
Confidence            4455677899999999999998 689999999865432    34444443

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=97.73  E-value=3.8e-05  Score=53.97  Aligned_cols=51  Identities=18%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .++..||+|.+........ +.+.+|+.+|
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~E~~~l   71 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK-ELIINEILVM   71 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCH-HHHHHHHHHH
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHH-HHHHHHHHHH
Confidence            4566677899999999999985 5688999999865444333 6788888765

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=97.73  E-value=9.5e-06  Score=57.52  Aligned_cols=61  Identities=20%  Similarity=0.361  Sum_probs=43.3

Q ss_pred             hhhHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           89 KWCAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        89 ~~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++..++......|...+.||+|+||.||++.. .++..||+|.++......  .++.+|+.+|
T Consensus        13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~e~~~l   74 (326)
T 2x7f_A           13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE--EEIKQEINML   74 (326)
T ss_dssp             ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTT--HHHHHHHHHH
T ss_pred             hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccH--HHHHHHHHHH
Confidence            344555555666777778999999999999987 468899999986443322  6777777654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=97.72  E-value=1.2e-05  Score=57.40  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++...++|...+.||+|+||.||++..      ..+..||+|.++........+.|.+|+.+|
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  102 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM  102 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHH
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHH
Confidence            344445666678899999999999985      235579999997544333337788888765

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.72  E-value=2.6e-05  Score=54.93  Aligned_cols=50  Identities=30%  Similarity=0.455  Sum_probs=34.5

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.... +..||+|.+...+.... ++|.+|+.+|
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l   62 (320)
T 2i6l_A           12 RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSV-KHALREIKII   62 (320)
T ss_dssp             TEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHH-HHHHHHHHHH
T ss_pred             ceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHH-HHHHHHHHHH
Confidence            45556789999999999998754 78999999976555444 7888998765

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=97.71  E-value=1.3e-05  Score=56.62  Aligned_cols=56  Identities=14%  Similarity=0.233  Sum_probs=40.8

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ......|...+.||+|+||.||++...++..||||.++... .....+.|.+|+.+|
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   80 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL   80 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHH
Confidence            33344565667899999999999998889999999985432 222227788888765

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.71  E-value=2.4e-05  Score=57.27  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.... +..||||.++........+.+.+|+.+|
T Consensus        10 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   61 (396)
T 4eut_A           10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL   61 (396)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred             ceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH
Confidence            34456789999999999998744 8899999997544333236778888765

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.71  E-value=2.3e-05  Score=54.45  Aligned_cols=53  Identities=23%  Similarity=0.403  Sum_probs=39.2

Q ss_pred             hhCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++....    +..||+|.++........+.|.+|+.+|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   70 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM   70 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHH
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            3445556789999999999998733    4469999997654444347788998765

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=97.70  E-value=1.8e-05  Score=57.60  Aligned_cols=52  Identities=27%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             hCCCccCeecccCCceeeeEEc--------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL--------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~--------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++..        ..+..||||+++..........|.+|+++|
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  128 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM  128 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHH
Confidence            3455567899999999999985        223579999997654443337788998775

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.70  E-value=3e-05  Score=56.46  Aligned_cols=48  Identities=33%  Similarity=0.460  Sum_probs=36.1

Q ss_pred             cCeecccCCceeeeEEcCC--C--CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPD--N--TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~--~--~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|+||.||+|.+.+  +  ..||||.++........++|.+|+.+|+
T Consensus        94 ~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~  145 (373)
T 3c1x_A           94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK  145 (373)
T ss_dssp             EEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTST
T ss_pred             CcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            4679999999999998732  2  3689999976544333388999998763

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=97.69  E-value=3.7e-05  Score=54.63  Aligned_cols=49  Identities=31%  Similarity=0.454  Sum_probs=38.5

Q ss_pred             CCccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.+     .++..||+|.++....... +.|.+|+.+|
T Consensus        43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   96 (326)
T 2w1i_A           43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL-RDFEREIEIL   96 (326)
T ss_dssp             EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHH-HHHHHHHHHH
T ss_pred             ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHH-HHHHHHHHHH
Confidence            44456799999999999985     3578999999977655444 7899998765

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=97.69  E-value=3.9e-05  Score=54.14  Aligned_cols=46  Identities=22%  Similarity=0.405  Sum_probs=36.3

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.+ .+..||+|.++....  . +.|.+|+.+|
T Consensus        10 ~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~--~-~~~~~E~~~l   55 (307)
T 2eva_A           10 IEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESE--R-KAFIVELRQL   55 (307)
T ss_dssp             EEEEEEEECCSSSEEEEEEE-TTEEEEEEECSSTTH--H-HHHHHHHHHH
T ss_pred             eeeeeEeecCCCceEEEEEE-CCeeEEEEEecChhH--H-HHHHHHHHHH
Confidence            44467899999999999998 578999999965332  2 6788888765

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=97.67  E-value=1.8e-05  Score=56.99  Aligned_cols=60  Identities=20%  Similarity=0.208  Sum_probs=41.4

Q ss_pred             hhHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           90 WCAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +++++.....+.|...+.||+|+||.||++.. .++..||||.++......  +.+..|+.+|
T Consensus        25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~e~~~l   85 (360)
T 3llt_A           25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYT--RSAKIEADIL   85 (360)
T ss_dssp             CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHH--HHHHHHHHHH
T ss_pred             eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhh--hhhHHHHHHH
Confidence            34444444455676678899999999999987 457899999997533222  4556666543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.67  E-value=4.6e-05  Score=55.05  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=39.7

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .++..||+|+++........+.|.+|+.+|
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   79 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKIL   79 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHH
Confidence            4566667899999999999985 457789999997544433337788998775

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=97.67  E-value=6.5e-06  Score=58.49  Aligned_cols=52  Identities=23%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCCccCeecccCCceeeeEEc----CCCCEEEEEecCCcchh-HHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDKI-RINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~~-~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||+||++.-    ..++.||||.++..... .....|.+|+.+|+
T Consensus        25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~   81 (304)
T 3ubd_A           25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILV   81 (304)
T ss_dssp             GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCC
T ss_pred             ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHH
Confidence            455567899999999999974    23678999999643221 11156888987764

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=97.66  E-value=2.4e-05  Score=55.68  Aligned_cols=52  Identities=27%  Similarity=0.398  Sum_probs=35.6

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||+|.++........+.+.+|+.++
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   59 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN   59 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHH
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHH
Confidence            34555678999999999999864 68899999986544333225677787664

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=97.66  E-value=1.7e-05  Score=56.68  Aligned_cols=49  Identities=27%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-------hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-------IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .+..||||.++....       ....+.+.+|+.+|
T Consensus        22 y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l   77 (336)
T 2vuw_A           22 LQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIIS   77 (336)
T ss_dssp             HHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHH
T ss_pred             chheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHH
Confidence            44467899999999999998 689999999964321       11115677777664

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.65  E-value=3.4e-05  Score=55.99  Aligned_cols=49  Identities=12%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc---chhHHHHHHHHHHhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES---DKIRINQEFQKEMGI  150 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~---~~~~~~~~f~~E~~~  150 (152)
                      .|...+.||+|+||.||++.. .++..||||.++..   ..... +.|.+|+.+
T Consensus        74 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~-~~~~~E~~~  126 (377)
T 3byv_A           74 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAI-KQMKEEVLR  126 (377)
T ss_dssp             EEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHH-HHHHHHHHG
T ss_pred             eEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHH-HHHHHHHHH
Confidence            344457899999999999996 55899999999632   22233 789999843

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=97.65  E-value=5.4e-05  Score=54.47  Aligned_cols=51  Identities=22%  Similarity=0.268  Sum_probs=39.7

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++........+.|.+|+.+|
T Consensus        34 ~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l   85 (360)
T 3eqc_A           34 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL   85 (360)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred             cceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            4555678999999999999874 57899999997654433337899999876

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=97.65  E-value=6.1e-05  Score=52.56  Aligned_cols=51  Identities=22%  Similarity=0.429  Sum_probs=37.5

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      |...+.||+|+||+||++... ++..||+|.++.... ......+.+|+.+|.
T Consensus         4 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~   56 (292)
T 3o0g_A            4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK   56 (292)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHT
T ss_pred             ceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHh
Confidence            445678999999999999874 578999999954332 222267888887763

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=97.65  E-value=5.9e-05  Score=52.31  Aligned_cols=53  Identities=32%  Similarity=0.501  Sum_probs=38.9

Q ss_pred             hhCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||++...+    +..||+|.++........+.|.+|+.+|
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   67 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM   67 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHH
Confidence            3456667789999999999998633    2359999997654433337888998765

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=97.64  E-value=3.8e-05  Score=54.56  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=41.7

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++...++|...+.||+|+||.||++....      ...||+|.++........+.|.+|+.+|
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  103 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM  103 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHH
Confidence            34444566667789999999999998632      2479999997655444447788998775

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=97.63  E-value=5.7e-05  Score=52.51  Aligned_cols=53  Identities=36%  Similarity=0.473  Sum_probs=38.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHH------HHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRI------NQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~------~~~f~~E~~~ls  152 (152)
                      +.|...+.||+|+||.||++.. .++..||+|.+........      .+.|.+|+.+|+
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~   78 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS   78 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHT
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHH
Confidence            3455567899999999999987 4688999999854332211      157888887763

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=97.62  E-value=6.8e-05  Score=53.23  Aligned_cols=52  Identities=37%  Similarity=0.464  Sum_probs=36.4

Q ss_pred             hCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.+      .++..||||.++.........+|.+|+.+|
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   87 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII   87 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHH
Confidence            4555567899999999999985      246689999997554433337888898765

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.62  E-value=4.2e-05  Score=53.38  Aligned_cols=47  Identities=28%  Similarity=0.463  Sum_probs=35.5

Q ss_pred             cCeecccCCceeeeEEcCC-C---CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-N---TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++...+ +   ..+|+|.++........+.|.+|+.+|
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l   76 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLM   76 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHH
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHH
Confidence            4679999999999998632 2   269999997655544337888998765

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.62  E-value=3.1e-05  Score=44.14  Aligned_cols=34  Identities=44%  Similarity=0.959  Sum_probs=29.3

Q ss_pred             CcccccccCCCCCCC-CccceeCCCCceeeCCCCCcC
Q 042973            7 VTDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus         7 C~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      |+|+++|..  ..|| +++|.+..++|.|.|+.||.+
T Consensus         2 C~dideC~~--~~~C~~g~C~n~~g~y~C~C~~Gy~~   36 (82)
T 1emn_A            2 AVDMDECKE--PDVCKHGQCINTDGSYRCECPFGYIL   36 (82)
T ss_dssp             CCCCCSSSS--TTSCSSSEECCCSSCCCEECCTTEEE
T ss_pred             CCccccCCC--CCCcCCCEEEecCCCEEEECCCCeEC
Confidence            789999975  2478 789999999999999999974

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=97.62  E-value=3.9e-05  Score=54.10  Aligned_cols=51  Identities=29%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||+|.+........ +.|.+|+.++
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   80 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDR-EEAQREADMH   80 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHH-HHHHHHHHHH
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHH-HHHHHHHHHH
Confidence            3455567899999999999986 5688999999865544444 7888888765

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=97.62  E-value=1.4e-05  Score=57.67  Aligned_cols=47  Identities=28%  Similarity=0.433  Sum_probs=33.2

Q ss_pred             hCCCccCeecccCCceeeeEE------cCCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGV------LPDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~------~~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      +.|...+.||+|+||.||++.      ...+..||+|.++....    .+|..|+.+
T Consensus        65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~----~~~~~e~~~  117 (365)
T 3e7e_A           65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP----WEFYIGTQL  117 (365)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH----HHHHHHHHH
T ss_pred             EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh----hHHHHHHHH
Confidence            345555679999999999994      45578999999976543    455555544

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.61  E-value=5.4e-05  Score=54.04  Aligned_cols=47  Identities=34%  Similarity=0.611  Sum_probs=35.4

Q ss_pred             cCeecccCCceeeeEEcCC-----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD-----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~-----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||+|....     +..||+|.++.........+|.+|+.+|
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l  100 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIM  100 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5689999999999998732     2359999997654443337899998765

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=97.61  E-value=4.8e-05  Score=53.90  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||+|++........ +.+.+|+.+|
T Consensus        29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~e~~~l   79 (337)
T 3ll6_A           29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKN-RAIIQEVCFM   79 (337)
T ss_dssp             EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHH-HHHHHHHHHH
T ss_pred             eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHH-HHHHHHHHHH
Confidence            455567899999999999986 4688999999865544444 6788887654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=97.61  E-value=6.3e-05  Score=53.02  Aligned_cols=45  Identities=20%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.||+|+||.||++.. .++..||||.++....... +.+.+|+.+|
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~E~~~l   64 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIR-SRVFREVEML   64 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCH-HHHHHHHHHH
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhH-HHHHHHHHHH
Confidence            5789999999999985 4688999999965443333 6788888765

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=97.60  E-value=3.7e-05  Score=53.78  Aligned_cols=50  Identities=30%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             CCccCeecccCCceeeeEEc-----CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-----PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-----~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.+     ..+..||+|.++........+.|.+|+.+|
T Consensus        23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   77 (302)
T 4e5w_A           23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL   77 (302)
T ss_dssp             EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHH
T ss_pred             hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHH
Confidence            34456799999999999984     357899999997544333236788888765

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=97.60  E-value=6.4e-05  Score=52.69  Aligned_cols=52  Identities=21%  Similarity=0.418  Sum_probs=38.5

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||+|.++........+.|.+|+.+|
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   74 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVL   74 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHH
Confidence            3455567899999999999985 458899999996543322237788888765

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=97.60  E-value=6.7e-05  Score=54.92  Aligned_cols=51  Identities=24%  Similarity=0.264  Sum_probs=39.9

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .|...+.||+|+||.||++... ++..||+|.+........ ..+.+|+.+|.
T Consensus        52 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~E~~il~  103 (387)
T 1kob_A           52 YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK-YTVKNEISIMN  103 (387)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHH-HHHHHHHHHHT
T ss_pred             ceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhH-HHHHHHHHHHH
Confidence            4555678999999999999873 578999999976554444 78899998763

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=97.59  E-value=6.5e-05  Score=53.27  Aligned_cols=47  Identities=26%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++....    +.+.+|+.+|
T Consensus        37 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~E~~~l   84 (330)
T 3nsz_A           37 DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK----KKIKREIKIL   84 (330)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCH----HHHHHHHHHH
T ss_pred             ceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccch----HHHHHHHHHH
Confidence            355567899999999999975 5688999999975443    5677777665

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=97.58  E-value=3.1e-05  Score=55.78  Aligned_cols=33  Identities=30%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      |...+.||+|+||.||++.. ..|..||||+++.
T Consensus        60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~   93 (336)
T 4g3f_A           60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL   93 (336)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred             eEeCcEeccCCCeEEEEEEECCCCCEEEEEEECH
Confidence            44455799999999999986 4588999999964

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=97.57  E-value=2.5e-05  Score=57.71  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=42.8

Q ss_pred             hHHHHHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973           91 CAAKLVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus        91 ~~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .++++....++|...+.||+|+||.||++.. .++..||+|.++.....  ...+.|.+|..+|
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il  115 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVL  115 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHH
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH
Confidence            3455555667788788999999999999987 45889999999643211  1113466666554

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=97.57  E-value=7.9e-05  Score=53.25  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.. ..|..||||++..... ....+.+.+|+.+|
T Consensus        15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   68 (328)
T 3fe3_A           15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIM   68 (328)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHH
Confidence            4566667899999999999986 5789999999954322 22226788888765

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.56  E-value=7.3e-05  Score=52.28  Aligned_cols=51  Identities=24%  Similarity=0.399  Sum_probs=37.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++... ++..||+|.+...+.... +.|.+|+.+|
T Consensus        19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~e~~~l   70 (302)
T 2j7t_A           19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL-EDYIVEIEIL   70 (302)
T ss_dssp             GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCH-HHHHHHHHHH
T ss_pred             cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHH-HHHHHHHHHH
Confidence            34555677999999999999985 478999999876544433 7788888765

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=97.56  E-value=5.7e-05  Score=52.12  Aligned_cols=51  Identities=27%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++........+.+.+|+.++
T Consensus         8 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l   59 (276)
T 2yex_A            8 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN   59 (276)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHH
T ss_pred             ceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHH
Confidence            3555678999999999999874 58899999986443333236788888664

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.56  E-value=0.0001  Score=51.57  Aligned_cols=51  Identities=14%  Similarity=0.012  Sum_probs=37.7

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.... +..||+|.++....  ....+.|.+|+..+
T Consensus        32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l   85 (286)
T 3uqc_A           32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRL   85 (286)
T ss_dssp             TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHH
Confidence            45556789999999999998744 78999999965432  22226788887654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.56  E-value=3.4e-05  Score=53.47  Aligned_cols=49  Identities=29%  Similarity=0.415  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++|...+.||+|+||.||++.. .+..||+|.++....  . +.|.+|+.+|.
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~--~-~~~~~E~~~l~   69 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDAT--A-QAFLAEASVMT   69 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-----HHHHHTHHHHT
T ss_pred             hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchhH--H-HHHHHHHHHHH
Confidence            4455567899999999999998 588999999975432  2 67888887763

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=97.56  E-value=6.9e-05  Score=54.35  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||||.++..... . +.+.+|+.+|
T Consensus        38 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l   87 (397)
T 1wak_A           38 RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHY-T-ETALDEIRLL   87 (397)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH-H-HHHHHHHHHH
T ss_pred             eEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcc-h-HHHHHHHHHH
Confidence            344456799999999999975 45789999999754322 2 6778887665

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=97.55  E-value=8.4e-05  Score=55.33  Aligned_cols=52  Identities=21%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. ..+..||||++..... ....+.|.+|+.+|
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l  106 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAIL  106 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHH
Confidence            4566678899999999999975 3588999999854322 22227788998876

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.55  E-value=7.8e-05  Score=52.08  Aligned_cols=50  Identities=34%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CCccCeecccCCceeeeEEcCCC----CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~----~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|...+.    ..+|+|.++........+.|.+|+.+|
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l   80 (298)
T 3f66_A           27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM   80 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHH
T ss_pred             hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHH
Confidence            34457899999999999987332    258999997655444347888998765

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=97.55  E-value=7.1e-05  Score=55.43  Aligned_cols=48  Identities=23%  Similarity=0.463  Sum_probs=35.0

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... .+..||||.++......  .++.+|+.+|
T Consensus        99 y~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~--~~~~~E~~~l  147 (429)
T 3kvw_A           99 YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFH--RQAAEEIRIL  147 (429)
T ss_dssp             EEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHH--HHHHHHHHHH
T ss_pred             EEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchH--HHHHHHHHHH
Confidence            444568999999999999763 47899999997543222  5666676554

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.54  E-value=1.7e-05  Score=42.58  Aligned_cols=35  Identities=29%  Similarity=0.583  Sum_probs=29.2

Q ss_pred             CcccccccCCCCCCC--C--ccceeCCCCceeeCCCCCc-CCC
Q 042973            7 VTDIDECLDKEKYHC--E--GKCKNTIGSCTCDCPIGMY-GDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~--~~C~~~~g~~~C~C~~g~~-~~~   44 (152)
                      |.++++|..   .||  +  ++|.+..++|.|.|+.||. +..
T Consensus         8 ~~~~d~C~s---nPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~   47 (61)
T 2k2s_B            8 SETPAACSS---NPCGPEAAGTCKETNSGYICRCNQGYRISLD   47 (61)
T ss_dssp             TTSCCHHHH---CSSCSSSCCEEEECSSEEEEECCTTEEEEEC
T ss_pred             cCCCCcCcC---CCCcCCCccccccCCCceEeECCCCCccCCC
Confidence            678889963   478  3  6999999999999999998 754

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.54  E-value=7.5e-05  Score=52.74  Aligned_cols=49  Identities=24%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMG  149 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~  149 (152)
                      +|...+.||+|+||+||++... ++..||||++...... .....+..|+.
T Consensus        58 ~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~  108 (311)
T 3p1a_A           58 SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVG  108 (311)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHH
T ss_pred             heeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHH
Confidence            3555678999999999999885 6889999998543221 22244555553

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.53  E-value=4.7e-05  Score=53.05  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..+|+|.+.........+.|.+|+.+|
T Consensus        23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l   74 (285)
T 3is5_A           23 LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVL   74 (285)
T ss_dssp             HEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHH
T ss_pred             heeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHH
Confidence            355567899999999999986 457899999986544332227788888765

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.53  E-value=5.9e-05  Score=54.31  Aligned_cols=50  Identities=28%  Similarity=0.398  Sum_probs=37.7

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||||+++....  ....++|.+|+.+|
T Consensus        56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l  108 (348)
T 1u5q_A           56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL  108 (348)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHH
T ss_pred             eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHH
Confidence            55567899999999999985 5688999999964322  22226788998775

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.52  E-value=5.2e-05  Score=42.02  Aligned_cols=27  Identities=41%  Similarity=0.791  Sum_probs=21.5

Q ss_pred             cccccccCCCCCCC--CccceeCCCCceee
Q 042973            8 TDIDECLDKEKYHC--EGKCKNTIGSCTCD   35 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~~~~g~~~C~   35 (152)
                      +|++||... ..+|  +++|.|..|+|.|.
T Consensus         1 ~DidEC~~~-~~~C~~~~~C~Nt~Gsy~C~   29 (71)
T 2kl7_A            1 SDVNECLTI-PEACKGEMKCINHYGGYLCL   29 (71)
T ss_dssp             CCSCCTTCC-CCSCTTEEEEEETTCCEEEE
T ss_pred             CccccccCC-CCCCCCCCEeECCCCCeEec
Confidence            478999753 3468  46899999999998

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.52  E-value=4.6e-05  Score=54.24  Aligned_cols=51  Identities=29%  Similarity=0.601  Sum_probs=32.6

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||+|... ++.    .||+|.++........++|.+|+.+|
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l   71 (327)
T 3poz_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM   71 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHH
T ss_pred             HcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHH
Confidence            4555678999999999999863 333    36999986544433337899998775

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.52  E-value=4.3e-05  Score=53.38  Aligned_cols=53  Identities=19%  Similarity=0.317  Sum_probs=25.8

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++.. .++..||||.+.........++|.+|+.+|
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l   67 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAM   67 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CC
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHH
Confidence            35566678899999999999986 457899999996543332236788888765

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=97.51  E-value=0.00013  Score=51.24  Aligned_cols=51  Identities=27%  Similarity=0.414  Sum_probs=37.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|++...... ...+.+.+|+.+|
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   56 (311)
T 4agu_A            4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRML   56 (311)
T ss_dssp             CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHH
T ss_pred             cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHH
Confidence            3445678999999999999874 4889999988544332 2236788888765

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=97.51  E-value=6.3e-05  Score=52.44  Aligned_cols=50  Identities=26%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++... ... +.|.+|+.+|.
T Consensus         7 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~-~~~~~E~~~l~   57 (303)
T 1zy4_A            7 DFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKL-STILSEVMLLA   57 (303)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHH-HHHHHHHHHHT
T ss_pred             cchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHH-HHHHHHHHHHH
Confidence            455567899999999999986 468899999996432 222 77888987763

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.50  E-value=3.6e-05  Score=46.22  Aligned_cols=40  Identities=38%  Similarity=0.734  Sum_probs=2.9

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      |+++++|..  ..+|.++|.|..++|.|.|+.||.++. ...|
T Consensus        66 C~dideC~~--~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C  106 (107)
T 2w2n_E           66 CEDIDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC  106 (107)
T ss_dssp             EEC----------------------------------------
T ss_pred             cccccccCC--CCCcCCeeecCCCCEEEECCCCceECCCCCcc
Confidence            999999974  358999999999999999999999876 4444

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.50  E-value=0.00013  Score=51.80  Aligned_cols=50  Identities=22%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMG  149 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~  149 (152)
                      ++|...+.||+|+||.||++.. .++..||||.++.........++..|+.
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~   72 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLD   72 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHH
Confidence            4555567899999999999987 4588999999965443332256666654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=97.49  E-value=8.7e-05  Score=53.96  Aligned_cols=51  Identities=24%  Similarity=0.439  Sum_probs=36.2

Q ss_pred             hhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++... ++..||||.++..... . .++..|+.++
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~-~~~~~e~~~l  104 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAF-L-NQAQIEVRLL  104 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHH-H-HHHHHHHHHH
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHH-H-HHHHHHHHHH
Confidence            345666678999999999999864 5778999999754322 2 5566665543

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=97.49  E-value=6.7e-05  Score=52.66  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++....... +.|.+|+.+|
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~e~~~l   60 (304)
T 2jam_A           10 TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRD-SSLENEIAVL   60 (304)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHH
T ss_pred             cceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccch-HHHHHHHHHH
Confidence            4555678999999999999863 688999999975443333 6788888765

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.48  E-value=0.00011  Score=53.80  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             cCeecccCCceeeeEEcC---CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++...   .+..||+|.++.....   ..+.+|+.+|
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~E~~~l   72 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS---MSACREIALL   72 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC---HHHHHHHHHH
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC---HHHHHHHHHH
Confidence            457999999999999974   4678999999654322   5677888765

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=97.48  E-value=8.5e-05  Score=52.86  Aligned_cols=47  Identities=23%  Similarity=0.436  Sum_probs=36.0

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .+..||||.++....    ..+.+|.+++
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~----~~~~~e~~~~   88 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE----RSWFREAEIY   88 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGGH----HHHHHHHHHH
T ss_pred             ccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchhH----HHHHHHHHHH
Confidence            4566678899999999999998 589999999965332    5566666543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.48  E-value=7.2e-05  Score=53.36  Aligned_cols=55  Identities=16%  Similarity=0.332  Sum_probs=39.9

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-----hhHHHHHHHHHHhhh
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-----KIRINQEFQKEMGIV  151 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-----~~~~~~~f~~E~~~l  151 (152)
                      ....+.|...+.||+|+||.||++.. .++..||+|.++...     .... +.|.+|+.+|
T Consensus        22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~-~~~~~E~~~l   82 (345)
T 3hko_A           22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDV-ERIKTEVRLM   82 (345)
T ss_dssp             HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHH-HHHHHHHHHH
T ss_pred             hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHH-HHHHHHHHHH
Confidence            33445566678899999999999987 457789999985432     1222 6788888765

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.47  E-value=8.9e-05  Score=51.03  Aligned_cols=51  Identities=22%  Similarity=0.422  Sum_probs=35.1

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhH---HHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR---INQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~---~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.. .+..||||.++......   ..+.|.+|+.++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l   60 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLF   60 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHH
T ss_pred             hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHH
Confidence            3455567899999999999998 58899999986543221   126688887664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.47  E-value=0.0001  Score=57.74  Aligned_cols=52  Identities=15%  Similarity=0.260  Sum_probs=39.9

Q ss_pred             hCCCccCeecccCCceeeeEEcC--CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP--DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~--~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++...  ++..||||.+...........|.+|+.+|
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l  133 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFL  133 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGG
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHH
Confidence            34555678999999999999874  57899999996544333337789998876

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=97.47  E-value=9.9e-05  Score=52.25  Aligned_cols=50  Identities=28%  Similarity=0.469  Sum_probs=36.9

Q ss_pred             hCCCccCeecccCCceeeeEEc--CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL--PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~--~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++..  .++..||||.++..... . +.+.+|+.+|
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~-~-~~~~~e~~~l   65 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRY-C-EAARSEIQVL   65 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHH-H-HHHHHHHHHH
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCch-h-HHHHHHHHHH
Confidence            3455567899999999999975  46789999999754332 2 5677777654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=97.47  E-value=0.00011  Score=54.37  Aligned_cols=52  Identities=25%  Similarity=0.417  Sum_probs=38.6

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. ..+..||||+++.... ....+.+.+|+.+|
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l   79 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITIL   79 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHH
Confidence            4566677899999999999986 4477899999965322 22226788898775

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.47  E-value=0.00014  Score=51.33  Aligned_cols=51  Identities=24%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||||.++.....  .....|.+|+.++
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l   66 (311)
T 3ork_A           13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNA   66 (311)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTC
T ss_pred             cEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            455567899999999999985 56889999999654222  2226788998765

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=97.46  E-value=8.6e-05  Score=52.75  Aligned_cols=36  Identities=36%  Similarity=0.610  Sum_probs=29.5

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESD  136 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~  136 (152)
                      ++|...+.||+|+||.||++.. ++..||||.++...
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~   48 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN   48 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG
T ss_pred             HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc
Confidence            3455567899999999999988 68999999996543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=97.46  E-value=6.2e-05  Score=52.05  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=38.2

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.... +..||+|++........ +.|.+|+.+|
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~-~~~~~E~~~l   60 (277)
T 3f3z_A           10 YYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDV-DRFKQEIEIM   60 (277)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCH-HHHHHHHHHH
T ss_pred             hEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchH-HHHHHHHHHH
Confidence            35556789999999999998744 66899999865444333 7788888765

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.46  E-value=0.00014  Score=52.76  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. ..|..||||++.... .....+.+.+|+.+|
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   78 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL   78 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH
Confidence            3455567899999999999986 458899999995432 222226788888765

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=97.45  E-value=0.00014  Score=50.69  Aligned_cols=51  Identities=29%  Similarity=0.477  Sum_probs=37.5

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      ..|...+.||+|+||.||++...  ..||+|.++.... ....+.|.+|+.+|.
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~   75 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLR   75 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHT
T ss_pred             cceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHH
Confidence            45555678999999999999874  3699999864432 222277999988763

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=97.45  E-value=0.00015  Score=50.98  Aligned_cols=51  Identities=25%  Similarity=0.460  Sum_probs=36.0

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++...  ......+|.+|+.+|
T Consensus        33 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l   86 (310)
T 2wqm_A           33 NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL   86 (310)
T ss_dssp             GEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHH
Confidence            455567899999999999986 568899999986422  222237788888765

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=97.45  E-value=4.5e-05  Score=53.24  Aligned_cols=51  Identities=27%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             CCCccC-eecccCCceeeeEEc---CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESH-FLGEGGFGSVYKGVL---PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~-~ig~g~~g~Vy~g~~---~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .|...+ .||+|+||.||++.+   ..+..||||.++..... ...++|.+|+.+|
T Consensus        17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l   72 (291)
T 1xbb_A           17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM   72 (291)
T ss_dssp             GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHH
T ss_pred             hhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHH
Confidence            343344 899999999999965   23578999999654322 2237788898765

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.45  E-value=0.00021  Score=50.02  Aligned_cols=53  Identities=25%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh---HHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI---RINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~---~~~~~f~~E~~~ls  152 (152)
                      .+|...+.||+|+||.||++.. .++..||+|.++.....   .....|.+|+.+|.
T Consensus         5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~   61 (305)
T 2wtk_C            5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLR   61 (305)
T ss_dssp             CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHT
T ss_pred             cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHH
Confidence            4566678999999999999987 45789999999654321   12277889987763

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=97.45  E-value=1.6e-05  Score=56.55  Aligned_cols=50  Identities=24%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..||+|.++..........+.+|+.+|
T Consensus         4 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   54 (324)
T 3mtl_A            4 YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLL   54 (324)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHH
T ss_pred             eEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHH
Confidence            444678999999999999874 58899999996544322212444565544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.44  E-value=7.3e-05  Score=54.95  Aligned_cols=42  Identities=36%  Similarity=0.725  Sum_probs=35.5

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      |++++||..+  .+|...|.|..|+|.|.|..||.++. ...|..
T Consensus        37 C~dideC~~~--~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~   79 (400)
T 3p5b_L           37 CEDIDECQDP--DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA   79 (400)
T ss_dssp             EEECCCCSTT--SSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCC
T ss_pred             ccCchhhhcc--CCCCCccCCCccceeeeccccccccccccceee
Confidence            9999999843  47978999999999999999998876 566753

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.44  E-value=3.8e-05  Score=40.37  Aligned_cols=38  Identities=21%  Similarity=0.454  Sum_probs=28.7

Q ss_pred             ccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        11 ~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |||... ..+|...|.|..|+|.|.|+.||.... +..|.
T Consensus         2 dEC~~~-~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~   40 (55)
T 2jkh_L            2 KLCSLD-NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI   40 (55)
T ss_dssp             CCTTTG-GGGCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             ccccCC-CCCcCcEeEcCCCCeEEeCCCCCEECCCCCeec
Confidence            678642 346877999999999999999997543 44454

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=97.43  E-value=0.00013  Score=52.82  Aligned_cols=48  Identities=10%  Similarity=-0.094  Sum_probs=35.1

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMG  149 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~  149 (152)
                      |...+.||+|+||.||++.. .++..||||.++....  ....+.+.+|+.
T Consensus        64 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~  114 (371)
T 3q60_A           64 LKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATF  114 (371)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHH
T ss_pred             eeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHH
Confidence            44556799999999999996 4688999999966442  222266777754

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.43  E-value=4.4e-05  Score=48.35  Aligned_cols=41  Identities=46%  Similarity=0.777  Sum_probs=33.2

Q ss_pred             CcccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            7 VTDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         7 C~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      |++++||... ..+| +++|.|..++|.|.|+.||.++. ...|
T Consensus       104 C~dideC~~~-~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C  146 (147)
T 2w86_A          104 CEDIDECEVF-PGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC  146 (147)
T ss_dssp             EEECCHHHHS-TTCSSSSEEEEETTEEEEECCTTCCBCTTSSCB
T ss_pred             cCccccccCC-CCCCCCCEEECCCCCEEeeCCCCCccCCCCCee
Confidence            9999999742 2357 57999999999999999999876 4444

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=97.43  E-value=7.8e-05  Score=52.18  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +.|...+.||+|+||.||++.. .++..||||.++..
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~   49 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKK   49 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence            3455567899999999999986 45789999998543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=97.43  E-value=6.1e-05  Score=52.37  Aligned_cols=50  Identities=20%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             CCCccCeecccCCceeeeEEcCC-C-------CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-N-------TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~-------~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.... +       ..||+|.++....... +.|.+|+.+|
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~-~~~~~E~~~l   66 (289)
T 4fvq_A            9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMM   66 (289)
T ss_dssp             GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGH-HHHHHHHHHH
T ss_pred             HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHH-HHHHHHHHHH
Confidence            34556789999999999998633 2       4699999976554444 7899998765

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=97.42  E-value=0.00014  Score=50.71  Aligned_cols=51  Identities=24%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++...... ..+.+.+|+.++
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l   56 (299)
T 2r3i_A            4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL   56 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHH
T ss_pred             hhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHH
Confidence            4555678999999999999874 58899999996543221 126788888765

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=97.42  E-value=0.00015  Score=51.49  Aligned_cols=50  Identities=26%  Similarity=0.263  Sum_probs=37.8

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++... ++..+|+|.++..... . ..+.+|+.+|
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-~-~~~~~E~~~l   55 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-Q-VLVKKEISIL   55 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-H-HHHHHHHHHH
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCccc-H-HHHHHHHHHH
Confidence            34555678999999999999874 4778999998754332 2 6788888765

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=97.41  E-value=4e-05  Score=55.79  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             HHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973           96 VKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus        96 ~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +.....|...+.||+|+||.||++.. .++..||+|++...
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~   43 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD   43 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC
Confidence            34455677778999999999999975 56889999998543

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=97.41  E-value=0.00021  Score=51.75  Aligned_cols=52  Identities=21%  Similarity=0.314  Sum_probs=37.3

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch----h---HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK----I---RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~----~---~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++... +|..||||.++....    .   ...+.|.+|+.+|
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l  153 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHIL  153 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHH
Confidence            44666688999999999999984 689999999854321    1   1125577777654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=97.41  E-value=0.00019  Score=51.05  Aligned_cols=50  Identities=28%  Similarity=0.430  Sum_probs=36.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..||+|++..... ....+.+.+|+.+|
T Consensus        27 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   78 (331)
T 4aaa_A           27 YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLL   78 (331)
T ss_dssp             EEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred             heeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHH
Confidence            444568999999999999874 488999999854332 22226678888765

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.41  E-value=0.00013  Score=52.86  Aligned_cols=53  Identities=26%  Similarity=0.282  Sum_probs=39.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-----HHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-----INQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-----~~~~f~~E~~~ls  152 (152)
                      +.|...+.||+|+||.||++... +|..||+|.++......     ..+.|.+|+.+|.
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~   70 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR   70 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHT
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHH
Confidence            44556678999999999999873 58899999985433211     1267889988763

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=97.41  E-value=9.4e-05  Score=38.79  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=26.1

Q ss_pred             cccccccCCCCCCC--Cccce-----eCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC--EGKCK-----NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~-----~~~g~~~C~C~~g~~~~~   44 (152)
                      .+++||.+   .||  +|+|.     +..+.|.|.|+.||.|..
T Consensus         6 ~~~~eC~s---~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~   46 (55)
T 3u7u_G            6 VKCAEKEK---TFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDR   46 (55)
T ss_dssp             EECCSTTT---TTSCTTCEEEEECCC--CCCEEEEECTTEESTT
T ss_pred             ccCCCCcC---CCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCC
Confidence            36788863   589  88995     456889999999999876

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.41  E-value=0.00016  Score=52.49  Aligned_cols=52  Identities=23%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .+|..||||++.... .....+.+.+|+.+|
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   82 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL   82 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH
Confidence            4555567899999999999974 568899999996532 222226788888765

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.40  E-value=8.2e-05  Score=53.52  Aligned_cols=50  Identities=20%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             hhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++... .+..||||.++....  . +.|.+|+.+|
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~-~~~~~E~~~l  102 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVD--K-KIVRTEIGVL  102 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHH
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchh--H-HHHHHHHHHH
Confidence            345666778999999999999985 477899999965432  2 5677787665

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.40  E-value=6e-05  Score=41.51  Aligned_cols=41  Identities=27%  Similarity=0.560  Sum_probs=31.9

Q ss_pred             cccccccCCCCCCCCccceeCCC-CceeeCCCCCcCCC-CCccC
Q 042973            8 TDIDECLDKEKYHCEGKCKNTIG-SCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         8 ~~~~~C~~~~~~~c~~~C~~~~g-~~~C~C~~g~~~~~-~~~c~   49 (152)
                      .|+++|.... ..|...|.|..| +|.|.|+.||.... +..|.
T Consensus         3 ~d~~eC~~~n-ggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~   45 (69)
T 1kli_L            3 DDQLICVNEN-GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT   45 (69)
T ss_dssp             SCCCCTTSGG-GGCSSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred             cccccccCCC-CCcCCEeEcCCCCCEEEeCCCCCeECCCCCccc
Confidence            5788996432 368889999998 79999999997654 55665

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.39  E-value=0.0002  Score=49.50  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++.... ....+.|.+|+.+|
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l   59 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL   59 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence            3455567899999999999987 4588999999964322 22237788888765

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=97.39  E-value=4.7e-05  Score=56.21  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=41.5

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      ..++....++|...+.||+|+||.||++... .+..||+|.++......  ....|.+|+.+|
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il  123 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM  123 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHH
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHH
Confidence            3445555667877889999999999999874 47899999985422111  113466776654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=97.38  E-value=0.00012  Score=57.16  Aligned_cols=47  Identities=26%  Similarity=0.456  Sum_probs=36.0

Q ss_pred             cCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||+|.+..    +..||+|.++........+.|.+|+.+|
T Consensus       395 ~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l  445 (656)
T 2j0j_A          395 GRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM  445 (656)
T ss_dssp             EEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHH
T ss_pred             eeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence            4569999999999998733    4579999997655444447899998775

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.38  E-value=0.00017  Score=53.95  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.- ..+..||||++..... ....+.+.+|+.+|
T Consensus        62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l  115 (464)
T 3ttj_A           62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM  115 (464)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHH
Confidence            4455567899999999999975 4578999999965322 22226788888765

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.38  E-value=0.0002  Score=51.39  Aligned_cols=52  Identities=21%  Similarity=0.359  Sum_probs=38.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .+|..||||.++.... ....+.|.+|+.+|
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   77 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL   77 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHH
Confidence            3455667899999999999986 4588999999965322 22226788888765

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=97.37  E-value=0.0002  Score=50.98  Aligned_cols=43  Identities=33%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++... ++..||||.++....    ..+.+|+.+|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~e~~~l   59 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRME----ANTQKEITAL   59 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGH----HHHHHHHHHH
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhhh----hhHHHHHHHH
Confidence            467999999999999874 578999999864322    4566666544

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=97.37  E-value=6.1e-05  Score=53.81  Aligned_cols=52  Identities=25%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHH----------------HHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRI----------------NQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~----------------~~~f~~E~~~ls  152 (152)
                      .+|...+.||+|+||.||++.. ++..||+|.++.......                .+.|.+|+.+|.
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   98 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT   98 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHT
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHH
Confidence            3455567899999999999999 899999999854322110                167888887763

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=97.37  E-value=0.00021  Score=49.50  Aligned_cols=52  Identities=29%  Similarity=0.360  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++.... ....+.+.+|+.++
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l   59 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC   59 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHH
Confidence            4455567899999999999986 4588999999854332 22226788888765

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=97.37  E-value=0.00012  Score=52.52  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=37.0

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||+|++...... .....+.+|+.+|
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   70 (351)
T 3mi9_A           18 KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL   70 (351)
T ss_dssp             GEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHH
Confidence            345567899999999999987 56889999998543322 1125777888765

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=97.37  E-value=0.00015  Score=52.45  Aligned_cols=50  Identities=24%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++... .+..||+|.++......  +.+.+|+.++
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~E~~~l   70 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID--ENVQREIINH   70 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSC--HHHHHHHHHH
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcccc--HHHHHHHHHH
Confidence            34555678999999999999874 58899999996543322  5677777654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.36  E-value=0.00021  Score=51.77  Aligned_cols=52  Identities=21%  Similarity=0.359  Sum_probs=37.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||||.++.... ......+.+|+.+|
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   95 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL   95 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHH
Confidence            3455567899999999999986 4588999999965322 22226788888765

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=97.36  E-value=0.00013  Score=52.30  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      .....++|...+.||+|+||.||++.. .++..||||++...
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   59 (360)
T 3e3p_A           18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD   59 (360)
T ss_dssp             HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC
T ss_pred             chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC
Confidence            344556777788999999999999987 45889999988543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=97.35  E-value=0.00018  Score=49.91  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD  136 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~  136 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++...
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   44 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV   44 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeeccc
Confidence            4455567899999999999986 568899999997543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.35  E-value=0.00016  Score=56.32  Aligned_cols=46  Identities=30%  Similarity=0.426  Sum_probs=34.6

Q ss_pred             CeecccCCceeeeEEcC---CCCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLP---DNTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      +.||+|+||.||+|.+.   .+..||||+++..... ...++|.+|+.+|
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il  424 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM  424 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHH
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHH
Confidence            36999999999999763   3568999999754332 2237899999876

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.34  E-value=6.2e-05  Score=53.00  Aligned_cols=52  Identities=35%  Similarity=0.438  Sum_probs=34.0

Q ss_pred             hCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++....    +..||+|.++.... ....+.|.+|+.+|
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l   90 (313)
T 3brb_A           34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM   90 (313)
T ss_dssp             GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHH
T ss_pred             HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHH
Confidence            345556679999999999998732    34799999964422 22226788888765

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=97.33  E-value=0.00019  Score=49.57  Aligned_cols=52  Identities=29%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++... ++..||+|.++.... .....++.+|+..+
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~   64 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH   64 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHH
Confidence            34555678999999999999874 688999999864322 12226777777554

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=97.33  E-value=0.0002  Score=51.59  Aligned_cols=49  Identities=22%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. .++..||||.++.... .. ..+.+|+.+|
T Consensus        20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~-~~~~~e~~~l   69 (373)
T 1q8y_A           20 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YT-EAAEDEIKLL   69 (373)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HH-HHHHHHHHHH
T ss_pred             eEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCcc-ch-hhhhHHHHHH
Confidence            455567899999999999985 5688999999975332 22 5677776554

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=97.33  E-value=0.00016  Score=50.02  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||+|.+......  .....+.+|+.++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l   63 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ   63 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHH
Confidence            44555678999999999999864 4678999998543221  1126788888765

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.33  E-value=4.6e-05  Score=46.54  Aligned_cols=36  Identities=39%  Similarity=0.689  Sum_probs=31.6

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+++++|...  .+|+++|.|..++|.|.|+.||.+.+
T Consensus        77 C~dideC~~~--~~C~~~C~n~~g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           77 CTDIDECENG--GFCSGVCHNLPGTFECICGPDSALAG  112 (118)
T ss_dssp             EEECCHHHHC--SSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             cccccccCCC--CCCcCeEEeCCCCEEEECCCCCccCC
Confidence            9999999753  47899999999999999999998754

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.33  E-value=0.00013  Score=52.00  Aligned_cols=53  Identities=28%  Similarity=0.571  Sum_probs=37.3

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .+|...+.||+|+||.||++... ++.    .||+|.++........+.|.+|+.+|+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~   72 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMA   72 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHT
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHH
Confidence            34555678999999999999863 344    368888865443333378999987763

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.33  E-value=2.8e-05  Score=54.28  Aligned_cols=40  Identities=20%  Similarity=0.665  Sum_probs=28.6

Q ss_pred             cccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCCCCccC
Q 042973            8 TDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDGKVDCR   49 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~~~~c~   49 (152)
                      +|+|||... .++|  ++.|.|..|+|.|.|..||.+++ ..|.
T Consensus         3 ~DiDEC~~~-~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG-~~C~   44 (285)
T 1gl4_A            3 LAQQTCANN-RHQCSVHAECRDYATGFCCRCVANYTGNG-RQCV   44 (285)
T ss_dssp             ----CHHHH-GGGSCTTEEEEECSSCEEEEECTTEEECS-SSEE
T ss_pred             ccchhccCC-CCCCCCCCEeEcCCCCeEEEcCCCCCCCC-CcCC
Confidence            478999753 3568  57899999999999999999865 3353

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=97.33  E-value=0.00013  Score=52.02  Aligned_cols=52  Identities=21%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             hCCCccCeecccCCceeeeEEc----CCCCEEEEEecCCcch---hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDK---IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++..    ..+..||+|.++....   ......+.+|+.+|
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l   75 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNIL   75 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHH
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHH
Confidence            3455567899999999999986    4688999999965421   11115567777654

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.32  E-value=0.00013  Score=51.99  Aligned_cols=52  Identities=25%  Similarity=0.462  Sum_probs=35.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||||.++...... ....+.+|+.+|
T Consensus        34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l   87 (329)
T 3gbz_A           34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLL   87 (329)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHG
T ss_pred             hhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHH
Confidence            4455567899999999999975 468899999996543322 125677888765

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=97.32  E-value=0.00021  Score=51.14  Aligned_cols=53  Identities=36%  Similarity=0.583  Sum_probs=33.9

Q ss_pred             hhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH----HHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR----INQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~----~~~~f~~E~~~l  151 (152)
                      ...|...+.||+|+||.||++... ++..||||.++......    ..+.+.+|+.+|
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l   66 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLL   66 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHH
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHH
Confidence            345666788999999999999874 48899999996432211    114677888765

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=97.32  E-value=0.00012  Score=52.60  Aligned_cols=51  Identities=20%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++....  ......+.+|+.+|
T Consensus         6 ~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l   59 (337)
T 1o6l_A            6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL   59 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHH
Confidence            4555678999999999999863 588999999964321  11125677787665

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=97.31  E-value=0.00022  Score=49.15  Aligned_cols=30  Identities=20%  Similarity=0.139  Sum_probs=25.9

Q ss_pred             cCeecccCCceeeeEEc-CCCCE--EEEEecCC
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQ--IAVKKPKE  134 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~--vavK~l~~  134 (152)
                      ...||+|+||.||++.. ++|..  ||||.++.
T Consensus        52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~   84 (258)
T 1zth_A           52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRI   84 (258)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence            46799999999999998 67888  99998643

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=97.31  E-value=0.00011  Score=46.32  Aligned_cols=43  Identities=30%  Similarity=0.605  Sum_probs=34.9

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      |+++++|... ..+|  +++|.|..++|.|.|+.||.+.. ...|.+
T Consensus        93 C~dideC~~~-~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~  138 (143)
T 2bou_A           93 CQDVDECSSG-QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK  138 (143)
T ss_dssp             EEECCHHHHT-CCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBT
T ss_pred             cCCccCccCc-CCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCcc
Confidence            8999999752 2478  58999999999999999999976 555653

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.31  E-value=0.00018  Score=56.37  Aligned_cols=52  Identities=23%  Similarity=0.395  Sum_probs=39.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .++..||||.++........+.|.+|+.+|
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL   66 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIM   66 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHH
Confidence            4566678999999999999987 458899999997643333337799998775

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.30  E-value=0.00033  Score=49.04  Aligned_cols=51  Identities=25%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. ..+..||+|.+....  .....+.|.+|+.++
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   65 (294)
T 4eqm_A           12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNS   65 (294)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHH
Confidence            355567899999999999985 458899999984322  222226788888765

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.30  E-value=0.00021  Score=51.68  Aligned_cols=52  Identities=29%  Similarity=0.360  Sum_probs=38.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||+|.++.... ....+.|.+|+.+|
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il   82 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC   82 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred             cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence            4456677899999999999986 4588999999954322 12226788888765

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=97.30  E-value=8.4e-05  Score=52.85  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.. .++..||||.+......   +.|.+|+.+|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~E~~~l   58 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA---PQLHLEYRFY   58 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSS---CCHHHHHHHH
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccch---HHHHHHHHHH
Confidence            4566677899999999999985 56889999998643321   3466666554

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=97.29  E-value=0.00029  Score=49.63  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++... ++..||+|.++.....  ...+.|.+|+.++
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   88 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTA   88 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHH
Confidence            45666778999999999999864 5789999999654322  2226788888765

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.29  E-value=0.00031  Score=48.88  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=35.4

Q ss_pred             cCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      ...||+|+||.||++.. ..+..||+|.+..... ....+.|.+|+.+|+
T Consensus        31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~   80 (290)
T 1t4h_A           31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK   80 (290)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHT
T ss_pred             eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHH
Confidence            44699999999999987 4477899999864322 222377889987763

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.29  E-value=0.00016  Score=50.02  Aligned_cols=52  Identities=23%  Similarity=0.453  Sum_probs=38.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++......  ..+.|.+|+.++
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l   65 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH   65 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHH
Confidence            3455567899999999999986 568899999996433211  126688888765

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=97.29  E-value=0.00022  Score=50.85  Aligned_cols=50  Identities=26%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             hCCCccCeecccCCceeeeEEcC-C-CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-D-NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~-~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++... . +..||+|.++..... . +.+.+|+.+|
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~-~-~~~~~E~~~l   70 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKY-R-EAARLEINVL   70 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHH-H-HHHHHHHHHH
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccc-h-hHHHHHHHHH
Confidence            34555678999999999999863 3 368999999754322 2 5677777654

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.29  E-value=0.00021  Score=50.77  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             Cc-ccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC
Q 042973            7 VT-DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~-~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+ ++++|......+|..+|.|..++|.|.|+.|+.+..
T Consensus        39 C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~   77 (317)
T 3h5c_B           39 CELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGE   77 (317)
T ss_dssp             SCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCT
T ss_pred             cccCcccCCCCCCCCCcCccccCCCeeEEeccccccccc
Confidence            88 999997532358966999999999999999998864

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.29  E-value=0.00018  Score=44.88  Aligned_cols=37  Identities=43%  Similarity=0.850  Sum_probs=30.1

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+|+++|... ..||  +++|.+..++|.|.|++||.+..
T Consensus         2 c~dideC~~~-~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~   40 (135)
T 2vj3_A            2 AQDVDECSLG-ANPCEHAGKCINTLGSFECQCLQGYTGPR   40 (135)
T ss_dssp             -CCCCTTTSS-SCSSSTTCEEEECSSSEEEECCTTEESTT
T ss_pred             CcccccccCC-CCCCCCCCEeECCCCCEEEECCCCCcCCc
Confidence            6899999753 3578  67999999999999999998864

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=97.28  E-value=0.00017  Score=51.28  Aligned_cols=51  Identities=27%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-----HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-----INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-----~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++......     ..++|.+|+.+|
T Consensus        12 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l   68 (326)
T 2y0a_A           12 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL   68 (326)
T ss_dssp             HEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHH
T ss_pred             ceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHH
Confidence            3555678999999999999873 58899999985432211     126788888765

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=97.28  E-value=0.00013  Score=50.84  Aligned_cols=49  Identities=24%  Similarity=0.408  Sum_probs=36.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.+......   ++|.+|+.++
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~l   58 (296)
T 3uzp_A            9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKIY   58 (296)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC---CHHHHHHHHH
T ss_pred             cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch---hHHHHHHHHH
Confidence            4566678899999999999985 56889999998543322   3566666554

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=97.27  E-value=0.00012  Score=50.70  Aligned_cols=46  Identities=26%  Similarity=0.593  Sum_probs=34.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++...     ..+.+|+.+|
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l   58 (284)
T 2a19_B           12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKAL   58 (284)
T ss_dssp             HEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHH
T ss_pred             ccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHH
Confidence            4555678999999999999984 68899999996543     2344555443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=97.27  E-value=0.00028  Score=49.22  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--------hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--------IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--------~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||||.++....        ....+.+.+|+.+|
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l   77 (298)
T 1phk_A           17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL   77 (298)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHH
Confidence            45555678999999999999874 578999999854321        11125677887765

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=97.26  E-value=0.00017  Score=51.76  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=37.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++.. ..+..||+|.++......  ....+.+|+.+|
T Consensus        10 ~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l   63 (336)
T 3h4j_B           10 PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL   63 (336)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHH
T ss_pred             CEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHH
Confidence            455567899999999999986 568899999985432211  125788888765

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.26  E-value=0.00017  Score=49.86  Aligned_cols=50  Identities=26%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh-----HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI-----RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~-----~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..||+|.++.....     ...+.|.+|+.+|
T Consensus         7 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l   62 (283)
T 3bhy_A            7 YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNIL   62 (283)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH
T ss_pred             hhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHH
Confidence            445678999999999999874 5889999998543221     1126788888765

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=97.25  E-value=0.00025  Score=51.04  Aligned_cols=51  Identities=20%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++...  .....+.+.+|..+|
T Consensus        10 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l   63 (345)
T 3a8x_A           10 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVF   63 (345)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHH
T ss_pred             heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHH
Confidence            4555678999999999999874 47889999996432  122225577777654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.25  E-value=0.00018  Score=53.02  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=36.9

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-------hHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-------IRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++.. ..+..||||.+.....       ......|.+|+.+|
T Consensus       134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l  194 (419)
T 3i6u_A          134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEIL  194 (419)
T ss_dssp             HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHH
T ss_pred             hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHH
Confidence            34566678899999999999986 4478999999854321       11113477888765

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=97.24  E-value=0.00015  Score=46.68  Aligned_cols=40  Identities=48%  Similarity=0.978  Sum_probs=31.5

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|++||..+  .|| +++|.|..++|.|.|++||.+.. +..|.
T Consensus         1 ~dideC~~~--~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~   42 (162)
T 1uzk_A            1 TDVNECLDP--TTCISGNCVNTPGSYICDCPPDFELNPTRVGCV   42 (162)
T ss_dssp             CCCCGGGST--TSSBTSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred             CccccCCCC--CCCCCCEeECCCCCEEEeCCCCCeECCCCCccc
Confidence            478999753  478 79999999999999999998643 34453

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=97.24  E-value=0.00017  Score=52.10  Aligned_cols=52  Identities=25%  Similarity=0.233  Sum_probs=36.7

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||+|.++....  ......+.+|..+|
T Consensus        23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il   77 (353)
T 3txo_A           23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRIL   77 (353)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHH
T ss_pred             hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHH
Confidence            4566677899999999999986 4588999999964321  11125566666554

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=97.24  E-value=0.0002  Score=51.68  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=37.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++..||+|.++.....  ...+.+.+|+.+|
T Consensus        42 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l   95 (350)
T 1rdq_E           42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL   95 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHH
Confidence            4555678999999999999874 5889999998543221  1126788888766

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=97.24  E-value=0.00023  Score=50.03  Aligned_cols=50  Identities=34%  Similarity=0.565  Sum_probs=33.2

Q ss_pred             hhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||++... ++..||+|.++....  . ++|.+|+.+|
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~-~~~~~e~~~l   78 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD--L-QEIIKEISIM   78 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC--C-HHHHHHHHHH
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH--H-HHHHHHHHHH
Confidence            345666678999999999999874 488999999965432  2 6678887665

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=97.24  E-value=0.00035  Score=50.59  Aligned_cols=52  Identities=19%  Similarity=0.212  Sum_probs=37.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. .++..||||+++... .....+.+.+|+.+|
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   78 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM   78 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHH
Confidence            3455567899999999999975 457899999996432 222226788888765

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=97.22  E-value=0.00018  Score=50.97  Aligned_cols=51  Identities=27%  Similarity=0.299  Sum_probs=37.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-----HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-----INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-----~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++......     ..++|.+|+.+|
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l   69 (321)
T 2a2a_A           13 FYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSIL   69 (321)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHH
T ss_pred             cEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHH
Confidence            3555678999999999999874 58899999985432211     126788888765

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=97.22  E-value=0.00037  Score=50.67  Aligned_cols=52  Identities=27%  Similarity=0.372  Sum_probs=29.8

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      ..|...+.||+|+||.||++.. ..+..||||++..... ......+.+|+.+|
T Consensus         9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l   62 (388)
T 3oz6_A            9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMIL   62 (388)
T ss_dssp             TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHH
Confidence            4566667899999999999975 4588999999854321 12226677777654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=97.22  E-value=0.0002  Score=50.82  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=29.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES  135 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~  135 (152)
                      +.|...+.||+|+||.||++... +..||||.+...
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~   71 (337)
T 3mdy_A           37 KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT   71 (337)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG
T ss_pred             cceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc
Confidence            45666788999999999999984 899999998543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=97.22  E-value=0.00019  Score=51.57  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=36.5

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh----HHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI----RINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~----~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++.. .++..||||.++.....    ...+.|.+|+.+|
T Consensus        26 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l   80 (351)
T 3c0i_A           26 YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC   80 (351)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             eEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHH
Confidence            44567899999999999986 45889999998532211    1126788888765

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=97.21  E-value=0.00019  Score=54.06  Aligned_cols=49  Identities=24%  Similarity=0.425  Sum_probs=35.4

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .++..||||.++.....   .++..|+.++
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~E~~il   56 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH---PQLLYESKIY   56 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS---CCHHHHHHHH
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc---HHHHHHHHHH
Confidence            4566678999999999999985 56889999987543322   3455555443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=97.21  E-value=0.00018  Score=51.77  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=37.0

Q ss_pred             hhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      ..++|...+.||+|+||.||++... ++..||+|.++....  ......+..|..+|
T Consensus        15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il   71 (345)
T 1xjd_A           15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL   71 (345)
T ss_dssp             -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHH
Confidence            3456766788999999999999974 578999999964321  11114566666543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=97.20  E-value=0.00015  Score=51.36  Aligned_cols=51  Identities=27%  Similarity=0.477  Sum_probs=34.2

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCC--EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNT--QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~--~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... ++.  .||+|.++........+.|.+|+.+|
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l   79 (327)
T 1fvr_A           26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL   79 (327)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHH
T ss_pred             HccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHH
Confidence            3444678999999999999873 344  35999986544333336788888776

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.20  E-value=0.00032  Score=49.32  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK  137 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~  137 (152)
                      ++|...+.||+|+||.||++... ++..||||.++....
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~   63 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN   63 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc
Confidence            34555678999999999999874 588999999965433

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=97.19  E-value=0.00036  Score=51.70  Aligned_cols=43  Identities=21%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++||+|+||+||.....+|..||||++.....    +.+.+|+.+|
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~----~~~~~E~~~l   62 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC----DIALMEIKLL   62 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGH----HHHHHHHHHH
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHH----HHHHHHHHHH
Confidence            467999999999755555799999999854322    4566777654

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=97.19  E-value=0.00025  Score=48.90  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=37.1

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++.....  ...+.+.+|+.+|
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   65 (276)
T 2h6d_A           12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNL   65 (276)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             cEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHH
Confidence            4555678999999999999874 6889999998643221  1125678887654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=97.19  E-value=0.0002  Score=51.61  Aligned_cols=36  Identities=22%  Similarity=0.484  Sum_probs=27.8

Q ss_pred             CCCccCeecccCCceeeeEEcCC------CCEEEEEecCCcc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKESD  136 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~------~~~vavK~l~~~~  136 (152)
                      .|...+.||+|+||.||++....      +..||||.+....
T Consensus        36 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~   77 (364)
T 3op5_A           36 AWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN   77 (364)
T ss_dssp             EEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC
T ss_pred             eEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccc
Confidence            45556789999999999998754      3689999986544

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=97.16  E-value=0.00034  Score=49.10  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      .+.|...+.||+|+||.||++.. .++..||+|.++.
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   44 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRV   44 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEec
Confidence            45676678899999999999985 4688999999853

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=97.16  E-value=0.00028  Score=53.12  Aligned_cols=51  Identities=24%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... .|..||||.++......  ....+.+|+.+|
T Consensus        17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l   70 (476)
T 2y94_A           17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL   70 (476)
T ss_dssp             TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHH
T ss_pred             CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH
Confidence            4455678999999999999863 68899999996432211  125788888776

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.16  E-value=0.0004  Score=34.71  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=24.5

Q ss_pred             cccCCCCCCC--Cccce--eCCCCceeeCCCCCcCCC
Q 042973           12 ECLDKEKYHC--EGKCK--NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        12 ~C~~~~~~~c--~~~C~--~~~g~~~C~C~~g~~~~~   44 (152)
                      +|......||  +++|.  +..++|.|.|+.||.+..
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   38 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDR   38 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTT
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCc
Confidence            4543223478  67998  667899999999998865

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=97.16  E-value=0.00018  Score=50.10  Aligned_cols=48  Identities=25%  Similarity=0.493  Sum_probs=34.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      ..|...+.||+|+||.||++.. .++..||+|.++.....   +++.+|+.+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~   58 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA---PQLRDEYRT   58 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTS---CCHHHHHHH
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCcc---HHHHHHHHH
Confidence            3455667899999999999984 56889999998543322   335555543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=97.14  E-value=0.00031  Score=49.91  Aligned_cols=46  Identities=22%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             CeecccCCceeeeEEcC-CCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      +.||+|+||.||++... ++..||+|.++...... ...++.+|+.+|
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l   82 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVL   82 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHH
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH
Confidence            67999999999999874 58899999986533221 126788887654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=97.14  E-value=8.4e-05  Score=52.53  Aligned_cols=38  Identities=26%  Similarity=0.494  Sum_probs=31.1

Q ss_pred             HhhhCCCccCeecccCCceeeeEEc--CCCCEEEEEecCC
Q 042973           97 KATKNYDESHFLGEGGFGSVYKGVL--PDNTQIAVKKPKE  134 (152)
Q Consensus        97 ~~~~~~~~~~~ig~g~~g~Vy~g~~--~~~~~vavK~l~~  134 (152)
                      .....|...+.||+|+||.||++..  .++..||+|.++.
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~   47 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRV   47 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEecc
Confidence            3456677778999999999999987  4578899999854

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=97.13  E-value=0.00017  Score=45.36  Aligned_cols=38  Identities=37%  Similarity=0.621  Sum_probs=30.7

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+++++|......+|  +++|.+..++|.|.|+.||.+..
T Consensus        41 C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~   80 (143)
T 2bou_A           41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS   80 (143)
T ss_dssp             CEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETT
T ss_pred             CCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCc
Confidence            999999986443478  58999999999999999998864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.12  E-value=0.00012  Score=53.96  Aligned_cols=33  Identities=33%  Similarity=0.677  Sum_probs=27.6

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~  134 (152)
                      |...+.||+|+||.||++... .+..||||++..
T Consensus        56 y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~   89 (420)
T 1j1b_A           56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ   89 (420)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence            444678999999999999984 588999999854

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=97.12  E-value=0.00015  Score=53.91  Aligned_cols=52  Identities=19%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++.. .++..||||.++...  .......+.+|+.+|
T Consensus       148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l  202 (446)
T 4ejn_A          148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVL  202 (446)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CC
T ss_pred             HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHH
Confidence            3455567899999999999985 458899999996432  111125677787665

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=97.11  E-value=0.00028  Score=51.59  Aligned_cols=51  Identities=20%  Similarity=0.271  Sum_probs=36.7

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... .+..||+|.++.....  ...+.+.+|+.+|
T Consensus        16 ~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il   69 (384)
T 4fr4_A           16 HFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIM   69 (384)
T ss_dssp             GEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHH
Confidence            4555678999999999999864 4788999998543211  1126788888765

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.11  E-value=0.00032  Score=44.39  Aligned_cols=35  Identities=37%  Similarity=0.789  Sum_probs=25.4

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.++++|..   .||  +++|.+..++|.|.|+.||.+..
T Consensus        45 c~dideC~~---~pC~n~g~C~~~~~~y~C~C~~G~~G~~   81 (146)
T 1x7a_L           45 YVDGDQCEP---NPCLNGGLCKDDINSYECWCQVGFEGKN   81 (146)
T ss_dssp             -----CCSS---CSSCTTCEEEECSSCEEEECCSSEESTT
T ss_pred             CCCcCcCCC---CCCCCCCEeECCCCCEEEecCCCCcCCc
Confidence            889999963   478  57999999999999999998754

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=97.11  E-value=0.0002  Score=49.75  Aligned_cols=49  Identities=24%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      .+.|...+.||+|+||.||++.. .++..||||.+......   .++.+|+.+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~e~~~   57 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKI   57 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C---CCHHHHHHH
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc---hHHHHHHHH
Confidence            35677778999999999999985 56889999986443221   335555543

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=97.10  E-value=0.0003  Score=48.77  Aligned_cols=51  Identities=25%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             CCCccCeecccCCceeeeEEcC--CCC--EEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP--DNT--QIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~--~~~--~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.+.  ++.  .||+|.++....  ....+.|.+|+.+|
T Consensus        19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l   75 (291)
T 1u46_A           19 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM   75 (291)
T ss_dssp             GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHH
T ss_pred             HeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHH
Confidence            4555678999999999999862  233  689999965422  12227788888765

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=97.10  E-value=0.00019  Score=51.80  Aligned_cols=52  Identities=23%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             hCCCccCeecccCCceeeeEEcCC-CCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~-~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++.... +..||+|.++.....  ...+.+..|..+|
T Consensus        20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l   74 (353)
T 2i0e_A           20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL   74 (353)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHH
Confidence            456667789999999999998744 678999999653211  1125677777655

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=97.09  E-value=0.00042  Score=48.29  Aligned_cols=51  Identities=25%  Similarity=0.342  Sum_probs=36.9

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... .+..+|+|.+....  .....+.|.+|+.++
T Consensus        16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l   69 (294)
T 2rku_A           16 RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH   69 (294)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHH
Confidence            3455678999999999999874 47789999985432  222236788888765

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=97.09  E-value=0.00051  Score=49.91  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             CCCccCeeccc--CCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEG--GFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g--~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|  +||.||++... ++..||||.++.... ....+.+.+|+.+|
T Consensus        26 ~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   80 (389)
T 3gni_B           26 CYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVS   80 (389)
T ss_dssp             GEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred             cEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHH
Confidence            45556789999  99999999974 588999999964332 22226788888765

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=97.09  E-value=0.00045  Score=51.49  Aligned_cols=52  Identities=23%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.- .++..+|+|.+..... ....+.+.+|+.+|
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il   64 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARIC   64 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence            3455567899999999999975 4688999999854332 22226788998775

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=97.08  E-value=7e-05  Score=53.98  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             CCCccCeecccCCceeeeEEc----CCCCEEEEEecCC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKE  134 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~  134 (152)
                      +|...+.||+|+||.||++..    ..+..||||.++.
T Consensus        55 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~   92 (355)
T 1vzo_A           55 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK   92 (355)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred             ceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence            455567899999999999987    3688999999864

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=97.08  E-value=0.00032  Score=53.62  Aligned_cols=51  Identities=25%  Similarity=0.301  Sum_probs=36.8

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      .|...++||+|+||.||++... +|..||+|+++.....  .....+.+|+.+|
T Consensus       186 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL  239 (543)
T 3c4z_A          186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKIL  239 (543)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             heEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHH
Confidence            4555567999999999999874 5889999999543221  1125678887765

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.08  E-value=0.00033  Score=52.50  Aligned_cols=51  Identities=22%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~ls  152 (152)
                      |...+.||+|+||.||++... .+..||||.+.....  ......+.+|+.+|.
T Consensus        28 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~   81 (484)
T 3nyv_A           28 YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLK   81 (484)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHT
T ss_pred             eEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHH
Confidence            444678999999999999874 688999999843221  112277889988763

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=97.07  E-value=0.00017  Score=50.69  Aligned_cols=37  Identities=35%  Similarity=0.646  Sum_probs=28.9

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      .+.|...+.||+|+||.||++.. .++..||+|.++..
T Consensus        30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~   67 (312)
T 2iwi_A           30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRN   67 (312)
T ss_dssp             ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCST
T ss_pred             hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecc
Confidence            34566678899999999999976 45789999999654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=97.07  E-value=0.00036  Score=49.62  Aligned_cols=51  Identities=20%  Similarity=0.191  Sum_probs=36.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .++..||+|.++.....  ...+.+.+|..+|
T Consensus         7 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l   60 (318)
T 1fot_A            7 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML   60 (318)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence            455567899999999999987 45889999999643221  1125667777654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=97.07  E-value=0.00044  Score=52.16  Aligned_cols=52  Identities=23%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh------------HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI------------RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~------------~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++... .+..||+|.++.....            ...+.+.+|+.+|
T Consensus        36 ~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l  100 (504)
T 3q5i_A           36 ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLL  100 (504)
T ss_dssp             GTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHH
T ss_pred             cceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHH
Confidence            44555678999999999999874 4789999998543211            1126788888765

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.06  E-value=0.00031  Score=48.82  Aligned_cols=51  Identities=24%  Similarity=0.360  Sum_probs=37.6

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||+|.++.... ....+.|.+|+.+|
T Consensus        23 ~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l   75 (287)
T 2wei_A           23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL   75 (287)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHH
T ss_pred             cceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHH
Confidence            4555678999999999999874 588999999854322 11126788888765

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=97.05  E-value=0.00047  Score=49.13  Aligned_cols=51  Identities=25%  Similarity=0.342  Sum_probs=36.9

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcc--hhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD--KIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~--~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..+|+|.+....  .....+.|.+|+.++
T Consensus        42 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l   95 (335)
T 2owb_A           42 RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH   95 (335)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHH
Confidence            3445678999999999999874 46789999985432  222237788888765

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=97.05  E-value=0.00026  Score=52.02  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=34.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhH--HHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIR--INQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~--~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++... .+..+|+|.++......  ..+.+..|..+|
T Consensus        53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il  106 (396)
T 4dc2_A           53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVF  106 (396)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHH
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH
Confidence            4555678999999999999874 46789999996432211  113456666543

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.04  E-value=0.00033  Score=49.57  Aligned_cols=51  Identities=22%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-------hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-------IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-------~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||++... ++..||||.++....       ......|.+|+.+|
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l   69 (322)
T 2ycf_A           11 EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEIL   69 (322)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHH
T ss_pred             ceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHH
Confidence            4555678999999999999863 478999999854321       11114577887765

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=97.03  E-value=0.00025  Score=45.35  Aligned_cols=43  Identities=35%  Similarity=0.718  Sum_probs=33.7

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |.+.++|..+...+|+..|.|..+++.|.|..||.... +..|.
T Consensus       114 ~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG  157 (159)
T ss_dssp             EEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             cccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCccc
Confidence            67889998654457888999999999999999998654 45564

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=97.02  E-value=0.00039  Score=48.19  Aligned_cols=52  Identities=25%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchh--HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKI--RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~--~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||.||++... ++..||+|.+......  ...+.|.+|+.++
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l   68 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQ   68 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHH
Confidence            34555678999999999999874 4678999998543221  1126788888765

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.02  E-value=0.00032  Score=40.22  Aligned_cols=35  Identities=43%  Similarity=0.798  Sum_probs=28.3

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      +|+++|... ..+| +++|.+..++|.|.|++||.+.
T Consensus         1 ~dideC~~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~~   36 (86)
T 1lmj_A            1 TDIDECRIS-PDLCGRGQCVNTPGDFECKCDEGYESG   36 (86)
T ss_dssp             CCCCTTTTC-SSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CccccccCC-CCCCCCCEEECCCCCEEeeCCCCcCcc
Confidence            478999753 2458 6799999999999999999853

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.00  E-value=0.0004  Score=54.41  Aligned_cols=52  Identities=21%  Similarity=0.170  Sum_probs=36.0

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .+|...+.||+|+||.||++... .+..||||.++....  ....+.+..|..+|
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l  395 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL  395 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHH
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHH
Confidence            34555678999999999999874 477899999964321  11115667776654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=96.99  E-value=0.00038  Score=53.58  Aligned_cols=52  Identities=23%  Similarity=0.324  Sum_probs=37.7

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||.||++.. .+|..||+|.++....  ......+.+|+.+|
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL  238 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL  238 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHH
Confidence            3455567899999999999987 4588999999954321  11125678888765

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=96.98  E-value=0.00041  Score=52.18  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      |...+.||+|+||.||++... .+..||+|.++.... ......+.+|+.+|+
T Consensus        39 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~   91 (494)
T 3lij_A           39 YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLK   91 (494)
T ss_dssp             EEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHT
T ss_pred             eEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHH
Confidence            444568999999999999874 578999999864332 111277889988763

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.97  E-value=0.0003  Score=40.41  Aligned_cols=40  Identities=35%  Similarity=0.690  Sum_probs=30.7

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCC--CCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCP--IGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~--~g~~~~~-~~~c~   49 (152)
                      |+++++|..   .+|.++|.|..++|.|.|+  .|+.... ...|.
T Consensus        42 C~dideC~~---~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~   84 (87)
T 1z6c_A           42 CEDIDECSE---NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCE   84 (87)
T ss_dssp             EECCCHHHH---SCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCB
T ss_pred             CCCcCeeCC---CCCCCEEEccCCCEEEECCCCcCCcccCCCCcce
Confidence            999999963   4788899999999999995  5655443 44454

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.97  E-value=0.00029  Score=40.53  Aligned_cols=36  Identities=39%  Similarity=0.748  Sum_probs=28.6

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +++++|... ..+| +++|.+..++|.|.|++||.++.
T Consensus         1 ~dideC~~~-~~~C~~~~C~n~~g~y~C~C~~G~~~~~   37 (87)
T 1z6c_A            1 KDVDECSLK-PSICGTAVCKNIPGDFECECPEGYRYNL   37 (87)
T ss_dssp             CCSCSSSSS-SSSBTTSSCCCBTTBCCCSSSTTCEEET
T ss_pred             CccccccCC-CCCCCCCEeECCCCCEEEECCCCceECC
Confidence            478899753 2347 78999999999999999998543

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=96.97  E-value=0.00024  Score=51.00  Aligned_cols=35  Identities=11%  Similarity=0.263  Sum_probs=26.7

Q ss_pred             CCCccCeecccCCceeeeEEcCC---------CCEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD---------NTQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~---------~~~vavK~l~~~  135 (152)
                      +|...+.||+|+||.||++....         +..||+|.++..
T Consensus        43 ~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~   86 (352)
T 2jii_A           43 QWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD   86 (352)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT
T ss_pred             eEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc
Confidence            45556789999999999998753         789999998653

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=96.94  E-value=0.00035  Score=44.17  Aligned_cols=34  Identities=44%  Similarity=0.831  Sum_probs=29.2

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|+++|..   .|| +++|.+..++|.|.|++||.++.
T Consensus         2 ~dideC~~---~pC~ng~C~n~~g~y~C~C~~G~~g~~   36 (147)
T 2w86_A            2 ADIDECES---SPCINGVCKNSPGSFICECSSESTLDP   36 (147)
T ss_dssp             CCCCGGGG---CCSBTSEEEEETTEEEEECCTTEEECT
T ss_pred             CcCccCcC---CCCCCCEeECCCCCEEeECCCCcccCC
Confidence            47899974   478 78999999999999999998865

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=96.92  E-value=0.00085  Score=52.60  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=28.9

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ++|...++||+|+||.||++.. ..|..||+|.++.
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K  224 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK  224 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeH
Confidence            4566667899999999999986 4588999999953

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.92  E-value=0.00022  Score=52.10  Aligned_cols=41  Identities=27%  Similarity=0.664  Sum_probs=20.2

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++++||..  ..+|...|.|..|+|.|.|+.||.... +..|.
T Consensus        41 C~d~~eC~~--~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           41 CQDVNECAE--EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCK   82 (386)
T ss_dssp             -------------CCTTEEC-----CCEECCTTEEECTTSSCEE
T ss_pred             cCccceeCC--cCcccCcCCCCCCCCeEEECCCceEcCCCCeEC
Confidence            999999973  347977799999999999999998654 55675

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=96.92  E-value=0.00016  Score=51.30  Aligned_cols=50  Identities=24%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCE----EEEEecCCcchhHHHHHHHHHHhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQ----IAVKKPKESDKIRINQEFQKEMGI  150 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~----vavK~l~~~~~~~~~~~f~~E~~~  150 (152)
                      .|...+.||+|+||.||++... ++..    ||+|.+...........|.+|+.+
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~   68 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA   68 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHH
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHH
Confidence            3444578999999999999863 3443    888887543322211345555544

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=96.89  E-value=0.0011  Score=47.34  Aligned_cols=31  Identities=26%  Similarity=0.245  Sum_probs=26.1

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCc
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKES  135 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~  135 (152)
                      .++||+|+||.||++... ++..||+|.+...
T Consensus        34 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~   65 (336)
T 3fhr_A           34 KQVLGLGVNGKVLECFHRRTGQKCALKLLYDS   65 (336)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEESS
T ss_pred             ceeeeeCCCeEEEEEEECCCCCEEEEEEecCc
Confidence            346999999999999874 5889999999653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=96.89  E-value=0.00044  Score=51.90  Aligned_cols=50  Identities=24%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||++... ++..||||.++.... ......+.+|+.+|
T Consensus        24 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l   75 (486)
T 3mwu_A           24 YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL   75 (486)
T ss_dssp             EEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHH
T ss_pred             eEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHH
Confidence            444678999999999999863 588999999853221 11126788888765

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=96.88  E-value=0.00011  Score=52.57  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=29.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      ..|...+.||+|+||.||++.. .++..||||.++..
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~   60 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKE   60 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEEST
T ss_pred             cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehh
Confidence            3455567899999999999985 56789999998543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=96.87  E-value=9.4e-05  Score=52.44  Aligned_cols=38  Identities=39%  Similarity=0.764  Sum_probs=30.4

Q ss_pred             hhhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      ....|...+.||+|+||.||++.. .++..||||.++..
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~   79 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKD   79 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGG
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecc
Confidence            345566678899999999999985 56789999998543

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=96.82  E-value=0.0012  Score=48.44  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=28.2

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~  134 (152)
                      +.....||.|+||.||+|.-++|..||||.++.
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             EEecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            344567999999999999988999999998753

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=96.81  E-value=0.00048  Score=43.61  Aligned_cols=42  Identities=19%  Similarity=0.392  Sum_probs=32.8

Q ss_pred             CcccccccCCCCCCCCccc-eeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKC-KNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C-~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |+++++|... ..+|..+| .+..++|.|.|+.||.+.+ +..|.
T Consensus        82 C~~~deC~~~-~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~  125 (146)
T 1x7a_L           82 CELDATCNIK-NGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCK  125 (146)
T ss_dssp             TCEECCTTSG-GGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEE
T ss_pred             CCCCccccCC-CCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCC
Confidence            9999999742 34786699 9999999999999998544 34454

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=96.79  E-value=0.00033  Score=51.93  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~  135 (152)
                      .|...++||+|+||+||.....+++.||||++...
T Consensus        25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~   59 (432)
T 3p23_A           25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE   59 (432)
T ss_dssp             EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT
T ss_pred             EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH
Confidence            46666789999999955443447899999998653

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.77  E-value=0.00054  Score=41.42  Aligned_cols=38  Identities=39%  Similarity=0.733  Sum_probs=25.1

Q ss_pred             CcccccccCCC-C----CCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKE-K----YHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~-~----~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.|+++|.... .    ..|  +++|.+..++|.|.|+.||.+..
T Consensus         3 ~~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~   47 (114)
T 1aut_L            3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF   47 (114)
T ss_dssp             -----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTT
T ss_pred             ceecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCC
Confidence            56788886421 0    115  77899999999999999998865

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=96.77  E-value=0.00032  Score=50.37  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             hCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCc
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKES  135 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~  135 (152)
                      +.|...+.||+|+||.||++... ++..||+|.++..
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~   58 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS   58 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred             ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc
Confidence            34555678999999999999874 4789999999543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=96.71  E-value=0.00086  Score=48.79  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcch--hHHHHHHHHHHhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDK--IRINQEFQKEMGI  150 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~--~~~~~~f~~E~~~  150 (152)
                      +|...+.||+|+||.||++... ++..+|+|.++....  ......+..|..+
T Consensus        39 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~   91 (373)
T 2r5t_A           39 DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNV   91 (373)
T ss_dssp             GEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------C
T ss_pred             heEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHH
Confidence            4555678999999999999874 477899999954332  1111455666543

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.70  E-value=0.00064  Score=43.98  Aligned_cols=43  Identities=33%  Similarity=0.692  Sum_probs=33.2

Q ss_pred             CcccccccCCCC--CCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEK--YHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~--~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |.++++|..+..  .+|...|.|..|+|.|.|+.||.... ...|.
T Consensus       121 ~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             EEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             ccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccc
Confidence            678899975432  24877999999999999999998554 55565

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.68  E-value=0.00058  Score=42.97  Aligned_cols=35  Identities=31%  Similarity=0.683  Sum_probs=29.8

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.++++|..   .||  +++|.+..++|.|.|+.||.+..
T Consensus        44 c~did~C~~---~pC~n~g~C~~~~g~y~C~C~~G~~G~~   80 (142)
T 2c4f_L           44 YSDGDQCAS---SPCQNGGSCKDQLQSYICFCLPAFEGRN   80 (142)
T ss_dssp             HTTCCGGGG---CCCCTTCEEEEETTEEEEECCTTEESTT
T ss_pred             CCccCcCcC---CCcCCCCEEeCCCCCEEeeCCCCccCCc
Confidence            778999973   478  57999999999999999998755

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.61  E-value=0.00032  Score=46.54  Aligned_cols=35  Identities=40%  Similarity=0.882  Sum_probs=0.0

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.++++|..   .||  +++|.+..++|.|.|+.||.+..
T Consensus        39 c~dideC~~---~pC~ngg~C~n~~g~y~C~C~~Gf~G~~   75 (195)
T 1nfu_B           39 YKDGDQCET---SPCQNQGKCKDGLGEYTCTCLEGFEGKN   75 (195)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCcccCC---CCCCCCCEeECCCCCeeEeCCCCceecc
Confidence            889999973   478  57899999999999999998754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=96.61  E-value=0.0016  Score=47.73  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=25.0

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ++||+|+||.||++.. ..+..||||.++.
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~   97 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   97 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence            5799999999999986 4578999999964

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=96.61  E-value=0.00023  Score=50.14  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=38.8

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhH-HHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIR-INQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~-~~~~f~~E~~~l  151 (152)
                      .+++....++|...+.||+|+||.||++....  .+|+|.++...... ..+.|.+|+.++
T Consensus        25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l   83 (319)
T 2y4i_B           25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAY   83 (319)
T ss_dssp             GGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGG
T ss_pred             cccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHH
Confidence            34444455667777899999999999999743  59999986432211 114566676654

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.60  E-value=0.00075  Score=34.70  Aligned_cols=31  Identities=19%  Similarity=0.523  Sum_probs=24.7

Q ss_pred             CCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           19 YHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        19 ~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      .+|...|.|..|+|.|.|+.||.... ...|.
T Consensus         6 g~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~   37 (51)
T 1kig_L            6 GGCDQFCREERSEVRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             TSSSSCCCEETTEECCCCCTTEEECTTSSCEE
T ss_pred             CCcCCEeEcCCCCeEEeCCCCcEECCCCCccc
Confidence            36877899999999999999997543 45564

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=96.60  E-value=0.0014  Score=41.06  Aligned_cols=35  Identities=29%  Similarity=0.793  Sum_probs=30.4

Q ss_pred             Cc-ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VT-DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~-~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+ ++++|..   .+|  +++|.+..++|.|.|+.||.++.
T Consensus        93 C~~~i~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A           93 CQHNINECEV---EPCKNGGICTDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             SCEECCTTTT---CCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred             cccCCCcCCC---CCCCCCCEeECCCCCeEeECCCCCccCC
Confidence            87 9999963   356  78999999999999999999987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.55  E-value=0.0017  Score=51.13  Aligned_cols=41  Identities=37%  Similarity=0.738  Sum_probs=34.7

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++++||..+  .+|..+|.|..|+|.|.|+.||.+.. ...|.
T Consensus       331 C~dideC~~~--~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~  372 (699)
T 1n7d_A          331 CEDIDECQDP--DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK  372 (699)
T ss_dssp             CCCCCCCSSS--SSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCB
T ss_pred             ccCccccCCC--CccccccccCCCCeeeeeecccccCCCCCccc
Confidence            9999999743  47888999999999999999999865 45565

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=96.53  E-value=0.0024  Score=44.60  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ++||+|+||.||++.. .++..||+|.++.
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   53 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   53 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence            5799999999999986 4588999999964

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=96.53  E-value=0.0009  Score=34.71  Aligned_cols=34  Identities=26%  Similarity=0.769  Sum_probs=25.5

Q ss_pred             ccccCCCCCCC--Cccce--eCCCCceeeCCCCCcCCC
Q 042973           11 DECLDKEKYHC--EGKCK--NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        11 ~~C~~~~~~~c--~~~C~--~~~g~~~C~C~~g~~~~~   44 (152)
                      ..|......||  +++|.  +..++|.|.|+.||.|..
T Consensus         4 ~~C~~~~~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~   41 (53)
T 1nql_B            4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGER   41 (53)
T ss_dssp             EECCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTT
T ss_pred             cccCCCCCCCCCCCeEEeeecCCCCEEEecCCCCcCCC
Confidence            34554334678  58998  566789999999999876

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=96.49  E-value=0.0013  Score=39.95  Aligned_cols=34  Identities=26%  Similarity=0.581  Sum_probs=28.6

Q ss_pred             cccccccCCCCCCCCccceeC-CCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHCEGKCKNT-IGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c~~~C~~~-~g~~~C~C~~g~~~~~   44 (152)
                      +++++|.   ..||..+|.+. .++|.|.|++||.+..
T Consensus         2 ~dideC~---~~pC~~~C~~~~~g~y~C~C~~Gy~g~~   36 (118)
T 1dx5_I            2 EPVDPCF---RANCEYQCQPLDQTSYLCVCAEGFAPIP   36 (118)
T ss_dssp             CCCCGGG---GCCCSSEEEECSSSCEEEECCTTEEEET
T ss_pred             CccccCC---CCCCCCCCCCCCCCCEEeECCCCccccC
Confidence            5789995   35787799999 8999999999998764

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=96.48  E-value=0.00061  Score=49.81  Aligned_cols=33  Identities=30%  Similarity=0.692  Sum_probs=27.3

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~  134 (152)
                      |...+.||+|+||.||++....+..||+|++..
T Consensus        42 Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~   74 (394)
T 4e7w_A           42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQ   74 (394)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTEEEEEEEEEC
T ss_pred             EEEeEEEeeCCCeEEEEEEECCCCeEEEEEEec
Confidence            444568999999999999987777799998854

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.45  E-value=0.00083  Score=44.57  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             Ccc-c-ccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTD-I-DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~-~-~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++ + ++|... ..+|..+|.+..++|.|.|+.||...+ +..|.
T Consensus        76 Ce~~i~deC~~~-~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~  120 (195)
T 1nfu_B           76 CELFTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI  120 (195)
T ss_dssp             -----CCGGGTG-GGGCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             ccccccccccCC-CCCCCCEeECCCCCeEEECCCCceeCCCCCccc
Confidence            886 4 789742 347867999999999999999998443 44464

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=96.44  E-value=0.0024  Score=36.92  Aligned_cols=35  Identities=26%  Similarity=0.850  Sum_probs=28.4

Q ss_pred             Cc--ccccccCCCCCCC--CccceeCC--CCceeeCCCCCcCCC
Q 042973            7 VT--DIDECLDKEKYHC--EGKCKNTI--GSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~--~~~~C~~~~~~~c--~~~C~~~~--g~~~C~C~~g~~~~~   44 (152)
                      |+  ++++|..   .||  +++|.+..  ++|.|.|+.||.+..
T Consensus        43 C~~~~~~~C~~---~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   83 (91)
T 1tpg_A           43 CHSVPVKSCSE---PRCFNGGTCQQALYFSDFVCQCPEGFAGKS   83 (91)
T ss_dssp             CCEECEEECSS---CCSCTTCEEEEESSSSCEEEECCTTCBSSS
T ss_pred             cccCcCCcccC---CCCCCCCEeecCCCCCCeEeECCCCCcCCc
Confidence            64  6788863   478  68999987  899999999998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.35  E-value=0.0016  Score=51.97  Aligned_cols=41  Identities=37%  Similarity=0.738  Sum_probs=34.6

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++++||..+  .+|...|.|..|+|.|.|+.||.... ...|.
T Consensus       349 C~dideC~~~--~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~  390 (791)
T 3m0c_C          349 CEDIDECQDP--DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK  390 (791)
T ss_dssp             EECCCCCSSS--SSCTTTCCBCSSCBCCCCCSSEECCSSCCCCE
T ss_pred             cccCcccCCC--CCCCCeeecCCCCceeecCCCCEeCCCCceee
Confidence            9999999843  47888999999999999999998765 55564

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.30  E-value=0.00065  Score=42.32  Aligned_cols=35  Identities=40%  Similarity=0.882  Sum_probs=0.0

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.++++|..   .||  +++|.+..++|.|.|+.||.+..
T Consensus        39 c~d~d~C~~---~pC~n~g~C~~~~~~y~C~C~~G~~G~~   75 (134)
T 2vh0_B           39 YKDGDQCET---SPCQNQGKCKDGLGEYTCTCLEGFEGKN   75 (134)
T ss_dssp             ----------------------------------------
T ss_pred             CCCcCcCCC---CCCCCcCCcccCCCCEEeeCCCCccCCc
Confidence            889999973   468  57999999999999999998754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=96.30  E-value=0.0012  Score=47.24  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=22.2

Q ss_pred             CCCccCeecccCCceeeeEEcC----CCCEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP----DNTQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~----~~~~vavK~l~~~  135 (152)
                      +|...+.||+|+||.||++...    .+..+|+|.+...
T Consensus        38 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~   76 (345)
T 2v62_A           38 QWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE   76 (345)
T ss_dssp             EEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred             eEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence            3555678999999999999985    4678999998654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=96.25  E-value=0.0033  Score=48.02  Aligned_cols=46  Identities=11%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcch--h-----HHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDK--I-----RINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~--~-----~~~~~f~~E~~~l  151 (152)
                      .+.||+|+||.||++.+ .+..+++|+......  .     ...+.|.+|+.+|
T Consensus       341 ~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il  393 (540)
T 3en9_A          341 EHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYL  393 (540)
T ss_dssp             -------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHH
Confidence            45799999999999976 578899988633211  1     1125588998776

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.09  E-value=0.0024  Score=46.81  Aligned_cols=31  Identities=32%  Similarity=0.668  Sum_probs=25.3

Q ss_pred             ccccCCCCCCCCccceeCCCCceeeCCCCCcC
Q 042973           11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus        11 ~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      +||... .+.|++.|.|..++|.|.|+.||..
T Consensus         1 ~eC~~~-~~~c~~~C~~~~~~y~C~C~~G~~~   31 (400)
T 3p5b_L            1 NECLDN-NGGCSHVCNDLKIGYECLCPDGFQL   31 (400)
T ss_dssp             CCTTTT-GGGCSSEEEECSSSEEEECCTTEEE
T ss_pred             CcccCC-CCCCCCEeECCCCCeEEECCCCCCc
Confidence            578643 3467889999999999999999974

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.01  E-value=0.0032  Score=37.95  Aligned_cols=42  Identities=19%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             Ccccc---cccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTDID---ECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~~~---~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++..   +|... ..+|..+|.+..++|.|.|+.||.+.. +..|.
T Consensus        48 C~~~~~~~~C~~~-~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~   93 (114)
T 1aut_L           48 CQREVSFLNCSLD-NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCH   93 (114)
T ss_dssp             SCEECCSSSSSSG-GGGCSSEEEECSSSEEEECCTTEEECTTSSCEE
T ss_pred             cCcCCcCCcCcCC-CCCCCCEeECCCCCEEeECCCCeeECCCCCccC
Confidence            87654   47532 235766999999999999999998754 44454

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.98  E-value=0.0077  Score=29.76  Aligned_cols=20  Identities=15%  Similarity=0.150  Sum_probs=9.6

Q ss_pred             eeeehhhhHHHHHHHHHHHH
Q 042973           54 TTIVAVIGAVIFSVIVGILI   73 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~~~   73 (152)
                      ..|+.+++.++++++++++.
T Consensus        11 ~~IA~gVVgGv~~~~ii~~~   30 (44)
T 2ks1_B           11 PSIATGMVGALLLLLVVALG   30 (44)
T ss_dssp             SSSTHHHHHHHHHHHHHHHH
T ss_pred             ceEEeehhHHHHHHHHHHHH
Confidence            34556665545444433333

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.94  E-value=0.0022  Score=46.09  Aligned_cols=38  Identities=26%  Similarity=0.675  Sum_probs=22.9

Q ss_pred             cccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           10 IDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        10 ~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      ++||..  ..+|...|.|..|+|.|.|+.||...+ ...|.
T Consensus         1 i~ec~~--~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~   39 (349)
T 3v64_C            1 VNECAE--EGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCK   39 (349)
T ss_dssp             ----------CCSSEECCC---CCEECCTTEEECTTSSCEE
T ss_pred             CcccCC--CCCCcCeeecCCCCeEEECCCCccCCCCCCccc
Confidence            478873  347988999999999999999998654 56675

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.92  E-value=0.0013  Score=43.09  Aligned_cols=38  Identities=21%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CcccccccCCC-CCCC--CccceeCC-----CCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKE-KYHC--EGKCKNTI-----GSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~-~~~c--~~~C~~~~-----g~~~C~C~~g~~~~~   44 (152)
                      |+++++|.... ..||  +++|.+..     ++|.|.|++||.+..
T Consensus        41 C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A           41 CEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             EEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             cCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            88999997421 3578  58999998     899999999998864

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=95.90  E-value=0.0024  Score=39.69  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=28.6

Q ss_pred             Ccc-c-ccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            7 VTD-I-DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~-~-~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++ + ++|... ..+|..+|.+..++|.|.|+.||...+ +..|.
T Consensus        76 C~~~i~d~C~~~-~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~  120 (134)
T 2vh0_B           76 CELFTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGYTLADNGKACI  120 (134)
T ss_dssp             -----CCGGGTG-GGGCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cccCCCCccccC-CCCCCCEeECCCCCEEEECCCCcEECCCCCccC
Confidence            887 5 789742 246866999999999999999998543 34453

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=95.89  E-value=0.0065  Score=32.49  Aligned_cols=26  Identities=27%  Similarity=0.655  Sum_probs=21.7

Q ss_pred             CCC--Ccccee-----CCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKN-----TIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~-----~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|.+     ..++|.|.|+.||.|..
T Consensus        12 ~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~   44 (63)
T 1hae_A           12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR   44 (63)
T ss_dssp             TTSCTTCEEEEEESSSSSCCEEEECCTTEESTT
T ss_pred             CcCCCCcEEecCCccCCCCCEEEECCCCCcCCc
Confidence            478  689986     56889999999999865

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.81  E-value=0.0015  Score=47.64  Aligned_cols=34  Identities=26%  Similarity=0.550  Sum_probs=0.0

Q ss_pred             cccccccCCCCCCCCccceeCCCCceeeCCCCCcC
Q 042973            8 TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus         8 ~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      +++++|... .++|..+|.+..|+|.|.|++||..
T Consensus         1 ~~~~~C~~~-~~~c~~~C~~~~g~~~C~C~~G~~l   34 (386)
T 3v65_B            1 TGEENCNVN-NGGCAQKCQMIRGAVQCTCHTGYRL   34 (386)
T ss_dssp             -----------------------------------
T ss_pred             CCcCcccCC-CCCCCCCCcCCCCCcEeECCCCceE
Confidence            468899643 3468779998899999999999974

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=95.70  E-value=0.0049  Score=43.06  Aligned_cols=41  Identities=24%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             ccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            9 DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         9 ~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +.|||......+|...|.+..++|.|.|..|+.... ...|.
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~   42 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCV   42 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEE
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccc
Confidence            357897542357999999999999999999987654 44454

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=95.56  E-value=0.0064  Score=32.16  Aligned_cols=30  Identities=30%  Similarity=0.703  Sum_probs=23.9

Q ss_pred             CCCccceeCC-CCceeeCCCCCcCCC-CCccC
Q 042973           20 HCEGKCKNTI-GSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        20 ~c~~~C~~~~-g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|...|.|.+ |+|.|.|+.||...+ ...|.
T Consensus         8 gC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~   39 (59)
T 2wph_E            8 RCEQFCKNSADNKVVCSCTEGYRLAENQKSCE   39 (59)
T ss_dssp             GCSSEEEECSTTCEEEECCTTEEECTTSSCEE
T ss_pred             CcCCEeEeCCCCCEEeeCCCCcEECCCCCccc
Confidence            5777899998 699999999997654 45564

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.43  E-value=0.0048  Score=31.86  Aligned_cols=30  Identities=30%  Similarity=0.657  Sum_probs=23.9

Q ss_pred             CCCccceeCCC-CceeeCCCCCcCCC-CCccC
Q 042973           20 HCEGKCKNTIG-SCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        20 ~c~~~C~~~~g-~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|...|.|..+ +|.|.|+.||.... +..|.
T Consensus         8 gC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~   39 (53)
T 2bz6_L            8 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT   39 (53)
T ss_dssp             GCSSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCEeEcCCCCCEEeeCCCCCEECCCCCccc
Confidence            57778999998 79999999997654 55564

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.42  E-value=0.012  Score=28.96  Aligned_cols=18  Identities=17%  Similarity=0.113  Sum_probs=8.4

Q ss_pred             eeeehhhhHHHHHHHHHH
Q 042973           54 TTIVAVIGAVIFSVIVGI   71 (152)
Q Consensus        54 ~~ii~~~~~~~~~~~~~~   71 (152)
                      ..|+.+++.+++++++++
T Consensus        10 ~aIA~gVVgGv~~v~ii~   27 (44)
T 2l2t_A           10 PLIAAGVIGGLFILVIVG   27 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeehHHHHHHHHHH
Confidence            335555555444443333

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.29  E-value=0.0063  Score=47.29  Aligned_cols=37  Identities=30%  Similarity=0.667  Sum_probs=30.8

Q ss_pred             CcccccccCCCCCCC--CccceeCC----CCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTI----GSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~----g~~~C~C~~g~~~~~   44 (152)
                      |+++++|... ..+|  +++|.+..    ++|.|.|+.||.+++
T Consensus        99 C~dideC~~~-~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG  141 (634)
T 1yo8_A           99 CEPENPCKDK-THNCHKHAECIYLGHFSDPMYKCECQTGYAGDG  141 (634)
T ss_dssp             EEECCTTTTT-CCCCCTTEEEEECCTTCSSSEEEEECTTEEESS
T ss_pred             ccccccccCC-CcccccCccccccccccccceeeeccCCccccC
Confidence            8899999753 2578  58999988    999999999998854

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=95.08  E-value=0.012  Score=41.63  Aligned_cols=34  Identities=29%  Similarity=0.764  Sum_probs=25.6

Q ss_pred             cccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .|.++|..   .||  +++|.+..++|.|.|++||.+..
T Consensus         3 ~d~~~C~~---~pC~~~g~C~~~~~~~~C~C~~g~~g~~   38 (317)
T 3h5c_B            3 KGGSPCIS---QPCLHNGSCQDSIWGYTCTCSPGYEGSN   38 (317)
T ss_dssp             ---CCTTS---CCCTTTCCCCCCSSSCCCCCSSSCCSSS
T ss_pred             ccCCcCCC---CCCCCCCEeECCCCCeEEECCCCCcCCc
Confidence            46788863   468  67999999999999999998753

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=95.07  E-value=0.017  Score=35.75  Aligned_cols=22  Identities=36%  Similarity=1.085  Sum_probs=13.1

Q ss_pred             CccceeCCCCceeeCCCCCcCC
Q 042973           22 EGKCKNTIGSCTCDCPIGMYGD   43 (152)
Q Consensus        22 ~~~C~~~~g~~~C~C~~g~~~~   43 (152)
                      +++|.+..++|.|.|+.||.+.
T Consensus        94 ~g~C~~~~g~~~C~C~~G~~G~  115 (135)
T 2vj3_A           94 NGRCLDKINEFQCECPTGFTGH  115 (135)
T ss_dssp             TCEEEECSSCEEEECCTTEESS
T ss_pred             CCEeECCCCCeEEECCCCCcCC
Confidence            4556666666666666666554

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=94.84  E-value=0.013  Score=44.88  Aligned_cols=35  Identities=31%  Similarity=0.879  Sum_probs=28.7

Q ss_pred             cccccCCCCCCC--Ccccee-CCCCceeeCC-CCCcCCCCCccCC
Q 042973           10 IDECLDKEKYHC--EGKCKN-TIGSCTCDCP-IGMYGDGKVDCRG   50 (152)
Q Consensus        10 ~~~C~~~~~~~c--~~~C~~-~~g~~~C~C~-~g~~~~~~~~c~~   50 (152)
                      .++|..   +||  +|+|.+ ..++|.|.|+ .||.|..   |+.
T Consensus         2 ~d~C~~---~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~---Ce~   40 (553)
T 1q4g_A            2 VNPCCY---YPCQHQGICVRFGLDRYQCDCTRTGYSGPN---CTI   40 (553)
T ss_dssp             CCGGGG---CCCCTTCEEEEETTTEEEEECTTSSEETTT---TCE
T ss_pred             CCcCCC---CCCCCCCCcCCCCCCceEeeCCCCCcCCCC---CCC
Confidence            467863   578  789999 8899999999 9999876   763

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=94.69  E-value=0.02  Score=44.54  Aligned_cols=37  Identities=32%  Similarity=0.628  Sum_probs=30.3

Q ss_pred             CcccccccCCCCCCC--Cc---cceeCCCCceee-CCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EG---KCKNTIGSCTCD-CPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~---~C~~~~g~~~C~-C~~g~~~~~   44 (152)
                      |+++++|.. ....|  ++   +|.+..++|.|. |+.||.+..
T Consensus        41 CeDiDEC~~-~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~   83 (634)
T 1yo8_A           41 CEDLDECAL-VPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ   83 (634)
T ss_dssp             CCBCCTTTT-SCCCSCCCSSSCCEEECSSSEEECCCCTTEEECC
T ss_pred             ccccccccC-CCCcccCCccccceeeccCceecccCCCCcccCc
Confidence            999999964 22348  45   899999999998 999998765

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=94.40  E-value=0.024  Score=35.48  Aligned_cols=43  Identities=28%  Similarity=0.464  Sum_probs=28.7

Q ss_pred             Ccc-cccccCC--CCCCCCccceeCCC-CceeeCCCCCcCCC-CCccC
Q 042973            7 VTD-IDECLDK--EKYHCEGKCKNTIG-SCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         7 C~~-~~~C~~~--~~~~c~~~C~~~~g-~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |++ +++|...  ...+|..+|.+..+ +|.|.|+.||...+ +..|.
T Consensus        81 C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~  128 (142)
T 2c4f_L           81 CETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT  128 (142)
T ss_dssp             SCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEE
T ss_pred             cccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCC
Confidence            876 4665321  12345558999998 99999999998543 34454

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=94.21  E-value=0.016  Score=29.63  Aligned_cols=26  Identities=27%  Similarity=0.907  Sum_probs=20.6

Q ss_pred             CCC--Ccccee----CCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKN----TIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~----~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|.+    ..+.|.|.|+.||.+..
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~   45 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQR   45 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTT
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCC
Confidence            367  679986    34678999999999875

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=94.16  E-value=0.011  Score=38.66  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=28.9

Q ss_pred             Cccc--ccccCCCCCCC---CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDI--DECLDKEKYHC---EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~--~~C~~~~~~~c---~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+++  ++|..    +|   +++|.+..++|.|.|+.||.++.
T Consensus       134 C~~~~~~~C~~----~C~~~~~~C~n~~g~y~C~C~~G~~g~~  172 (186)
T 1z1y_A          134 CTXTGETACQL----XCNTDNEVCXNVEGVYXCQCMEGFTFDX  172 (186)
T ss_dssp             EEEEECCCCCC----CCCTTTEEEEEETTEEEEEECTTCEEET
T ss_pred             ceEcCCCcccc----cccccCcceecCCCCeeeECCCCCccCc
Confidence            8775  77863    56   78999999999999999999876

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=93.88  E-value=0.055  Score=27.47  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=20.9

Q ss_pred             CCC-CccceeC--CCCceeeCCCCCcCCC
Q 042973           19 YHC-EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c-~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      ..| +|+|...  .+.+.|.|+.||.|..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~R   42 (50)
T 3e50_C           14 QFCFHGTCRFLVQEDKPACVCHSGYVGAR   42 (50)
T ss_pred             CcccCCEEeeccCCCCeEEECCCCCcccC
Confidence            457 7899864  3678999999999876

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=93.84  E-value=0.031  Score=34.72  Aligned_cols=33  Identities=30%  Similarity=0.753  Sum_probs=24.2

Q ss_pred             ccccccCCCCCCC--Cccce-------eCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC--EGKCK-------NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~-------~~~g~~~C~C~~g~~~~~   44 (152)
                      +.++|.   ..||  +++|.       +..++|.|.|+.||.+..
T Consensus        51 ~~~~C~---~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~   92 (143)
T 4d90_A           51 SAGPCT---PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH   92 (143)
T ss_dssp             CCCTTS---SCCCCTTCEEEECCCEETTEECCEEEECCTTEESTT
T ss_pred             cCCcCC---CCCCCCCCEecCCCccccCCCCCeEeECcCCCcCCC
Confidence            455564   2357  67898       566899999999998754

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=93.16  E-value=0.043  Score=42.39  Aligned_cols=34  Identities=32%  Similarity=1.008  Sum_probs=26.5

Q ss_pred             ccccCCCCCCC--Ccccee-CCCCceeeCC-CCCcCCCCCccCC
Q 042973           11 DECLDKEKYHC--EGKCKN-TIGSCTCDCP-IGMYGDGKVDCRG   50 (152)
Q Consensus        11 ~~C~~~~~~~c--~~~C~~-~~g~~~C~C~-~g~~~~~~~~c~~   50 (152)
                      ++|.   ..||  +|+|.+ ..++|.|.|+ .||.|..   |+.
T Consensus         2 d~C~---s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~---Ce~   39 (587)
T 3nt1_A            2 NPCC---SNPCQNRGECMSTGFDQYKCDCTRTGFYGEN---CTT   39 (587)
T ss_dssp             CTTT---TCCCCTTCEEEEEETTEEEEECTTSSEETTT---TCE
T ss_pred             CCCC---CCCCCCCCEeeCCCCCCeEEecCCCCccCCC---CCC
Confidence            5775   3578  789996 4588999999 9999876   653

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=93.14  E-value=0.038  Score=35.04  Aligned_cols=26  Identities=46%  Similarity=1.099  Sum_probs=23.1

Q ss_pred             CCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|.+..++|.|.|++||.|..
T Consensus       125 ~~C~~~g~C~~~~~~~~c~C~~g~~G~~  152 (162)
T 1g1s_A          125 MSCSKQGECLETIGNYTCSCYPGFYGPE  152 (162)
T ss_dssp             TGGGGSEEEEECSSSEEEEECTTEESTT
T ss_pred             CCCCCCCEEecCCCCceEeCCCCCcCcc
Confidence            467  78999999999999999999875

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=93.13  E-value=0.29  Score=27.32  Aligned_cols=19  Identities=11%  Similarity=0.191  Sum_probs=8.9

Q ss_pred             ceeeeehhhhHHHHHHHHH
Q 042973           52 HITTIVAVIGAVIFSVIVG   70 (152)
Q Consensus        52 ~~~~ii~~~~~~~~~~~~~   70 (152)
                      ..+.|+++++++++++-++
T Consensus         9 n~~~Iv~gvi~gilliGll   27 (79)
T 2knc_B            9 DILVVLLSVMGAILLIGLA   27 (79)
T ss_dssp             CSHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHH
Confidence            4445555555544443333

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.09  E-value=0.073  Score=41.92  Aligned_cols=32  Identities=31%  Similarity=0.641  Sum_probs=24.7

Q ss_pred             cccccCCCCCCCCccceeCCCCceeeCCCCCcC
Q 042973           10 IDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus        10 ~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      +++|... ..+|...|.+..++|.|.|++||..
T Consensus       294 ~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~~  325 (699)
T 1n7d_A          294 TNECLDN-NGGCSHVCNDLKIGYECLCPDGFQL  325 (699)
T ss_dssp             CCCTTSS-TTTSCTTCCCCTTCCCCCCCSSSCC
T ss_pred             ccccccc-ccCcCCCcccCCCCcEEeCCCCeEc
Confidence            4566532 2357779999999999999999985

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=92.90  E-value=0.098  Score=26.53  Aligned_cols=35  Identities=26%  Similarity=0.732  Sum_probs=23.4

Q ss_pred             cccccCCCCCCC-CccceeC--CCCceeeCCCCCcCCC
Q 042973           10 IDECLDKEKYHC-EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        10 ~~~C~~~~~~~c-~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      .+.|.......| +|+|...  .+.+.|.|+.||.|..
T Consensus         9 ~~~C~~~~~~yC~nG~C~~i~~~~~~~C~C~~gy~G~R   46 (50)
T 2rnl_A            9 KNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGER   46 (50)
T ss_dssp             CCTTTTTGGGTCSSSEEEEETTTTEEEEECCSSCCSSS
T ss_pred             CcccCchhhCcCCCCEEEEecCCCCeeEECCCCccccc
Confidence            345543222346 7899843  4567899999999875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.50  E-value=0.066  Score=41.68  Aligned_cols=41  Identities=24%  Similarity=0.603  Sum_probs=31.4

Q ss_pred             ccccccCCCCCCCCccceeCC-CCceeeCCCCCcCCC-CCccCC
Q 042973            9 DIDECLDKEKYHCEGKCKNTI-GSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus         9 ~~~~C~~~~~~~c~~~C~~~~-g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      +.++|.... ..|...|.+.+ ++|.|.|+.|+.... +..|..
T Consensus       264 ~~n~C~~~n-g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~  306 (628)
T 4a0p_A          264 GWNECASSN-GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA  306 (628)
T ss_dssp             CCCTTTTTG-GGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred             cceEeccCC-CCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence            567886432 36888999988 999999999997654 667864

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=92.42  E-value=0.063  Score=30.02  Aligned_cols=34  Identities=38%  Similarity=0.809  Sum_probs=22.9

Q ss_pred             ccccCCCCCCC-CccceeC--CCCceeeCCCCCcCCC
Q 042973           11 DECLDKEKYHC-EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        11 ~~C~~~~~~~c-~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      +.|.......| +|+|...  .+.+.|.|..||.|..
T Consensus        38 ~pC~~~~~~yClnG~C~~i~~~~~~~C~C~~GYtG~R   74 (79)
T 1xdt_R           38 DPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGER   74 (79)
T ss_dssp             -CTTTTTTTCCSSEEECCBGGGTBCCEEECTTEESTT
T ss_pred             CCCCccccCcCCCCEeeeecCCCCeEEEcCCCccccc
Confidence            45543223467 8899533  3567899999999876

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=92.25  E-value=0.14  Score=35.50  Aligned_cols=46  Identities=20%  Similarity=0.067  Sum_probs=33.7

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      -..+|.|..+.||+-++.||+.+.+|+-........ ..|..|+..|
T Consensus        20 v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~-~~~~~Ea~~L   65 (288)
T 3f7w_A           20 VAERGHSHRWHLYRVELADGTPLFVKALPDDAPALD-GLFRAEALGL   65 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCT-THHHHHHHHH
T ss_pred             EEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchh-hHHHHHHHHH
Confidence            455799999999999999999999998754433222 4566676544

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=92.18  E-value=0.04  Score=28.92  Aligned_cols=25  Identities=28%  Similarity=0.889  Sum_probs=19.4

Q ss_pred             CC--Ccccee----CCCCceeeCCCCCcCCC
Q 042973           20 HC--EGKCKN----TIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        20 ~c--~~~C~~----~~g~~~C~C~~g~~~~~   44 (152)
                      +|  +|+|..    ..+.+.|.|+.||.|..
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~   45 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQR   45 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSS
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCC
Confidence            56  679983    34578999999999876

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=91.93  E-value=0.06  Score=41.83  Aligned_cols=41  Identities=22%  Similarity=0.452  Sum_probs=30.6

Q ss_pred             ccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973            9 DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus         9 ~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      ..++|.... ..|...|.+.++++.|.|+.|+.... +..|.+
T Consensus       577 ~~~~C~~~n-g~C~~~C~~~~~~~~C~C~~g~~l~~d~~~C~~  618 (619)
T 3s94_A          577 GSNPCAEEN-GGCSHLCLYRPQGLRCACPIGFELISDMKTCIV  618 (619)
T ss_dssp             CCCGGGSGG-GGCSSEEEEETTEEEEECCTTCEECSSTTCEEC
T ss_pred             ccccCCCCC-CChhHhhccCCCCeEEECCCCCEECCCCCcCCC
Confidence            456775432 36888999999999999999997654 566753

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=91.35  E-value=0.11  Score=26.37  Aligned_cols=26  Identities=27%  Similarity=0.682  Sum_probs=19.9

Q ss_pred             CCC-Ccccee--CCCCceeeCCCCCcCCC
Q 042973           19 YHC-EGKCKN--TIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c-~~~C~~--~~g~~~C~C~~g~~~~~   44 (152)
                      ..| +|+|..  ..+.+.|.|+.||.|..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~R   42 (50)
T 1iox_A           14 HYCIKGRCRFVVAEQTPSCVCDEGYIGAR   42 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTT
T ss_pred             CcccCCEEEeEcCCCCeEEECCCCcccCC
Confidence            356 788963  34667899999999876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.40  E-value=0.23  Score=35.14  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=26.7

Q ss_pred             cccccCCCCCCCCccceeCCC--CceeeCCCCCcCCC-CCccC
Q 042973           10 IDECLDKEKYHCEGKCKNTIG--SCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        10 ~~~C~~~~~~~c~~~C~~~~g--~~~C~C~~g~~~~~-~~~c~   49 (152)
                      .+.|... ...|...|...++  .+.|.|+.|+.... +..|.
T Consensus       267 ~n~C~~~-ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~  308 (318)
T 3sov_A          267 TNPCGID-NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK  308 (318)
T ss_dssp             CCTTTTT-GGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBC
T ss_pred             ccccccC-CCCcceEEecCCCCCCeEEECCCCCEECCCCCCCC
Confidence            4556432 2357778887765  68999999987654 66675

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=88.42  E-value=0.15  Score=40.89  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             CCCccceeCCCCceeeCCCCCcC
Q 042973           20 HCEGKCKNTIGSCTCDCPIGMYG   42 (152)
Q Consensus        20 ~c~~~C~~~~g~~~C~C~~g~~~   42 (152)
                      .|...|.+..++|.|.|+.||..
T Consensus       321 ~C~~~C~~~~~~y~C~C~~Gy~l  343 (791)
T 3m0c_C          321 GCSHVCNDLKIGYECLCPDGFQL  343 (791)
T ss_dssp             GCSSEEEECSBSEEEECCTTCEE
T ss_pred             CccccccCCCCCcccCCCCCCcc
Confidence            35568999999999999999963

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=87.33  E-value=0.36  Score=33.88  Aligned_cols=36  Identities=25%  Similarity=0.468  Sum_probs=24.5

Q ss_pred             ccccccCCC--CCCCCccceeCC------CCceeeCCCCCcCCC
Q 042973            9 DIDECLDKE--KYHCEGKCKNTI------GSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~--~~~c~~~C~~~~------g~~~C~C~~g~~~~~   44 (152)
                      +.+.|....  ...|...|.+.+      ++|.|.|+.|+....
T Consensus       266 ~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~  309 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR  309 (316)
T ss_dssp             CCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             ccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECC
Confidence            456675320  235877898764      579999999987643

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=84.82  E-value=0.42  Score=30.14  Aligned_cols=26  Identities=38%  Similarity=1.123  Sum_probs=22.7

Q ss_pred             CCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .+|  +++|.+..+++.|.|.+|+.++.
T Consensus       125 ~~C~~~g~C~~~~~~~~c~C~~g~~g~~  152 (164)
T 3cfw_A          125 WSCSGHGECVEIINNYTCNCDVGYYGPQ  152 (164)
T ss_dssp             TSSCSSEEEEEETTEEEEEECTTCBSSS
T ss_pred             CcCCCCCeecccCCCceeeeCCCccccc
Confidence            356  88999999999999999999875

>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}

Probab=84.29  E-value=1.6  Score=20.37  Aligned_cols=7  Identities=14%  Similarity=0.036  Sum_probs=2.6

Q ss_pred             HHHHHHh
Q 042973           75 IGCIERR   81 (152)
Q Consensus        75 ~~~~~~~   81 (152)
                      ..+.+++
T Consensus        20 ~iRPQ~K   26 (37)
T 2rdd_B           20 ILRPQQK   26 (37)
T ss_dssp             THHHHHH
T ss_pred             HhhhHHH
Confidence            3333333

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=83.96  E-value=0.84  Score=27.60  Aligned_cols=25  Identities=28%  Similarity=0.759  Sum_probs=19.0

Q ss_pred             CC--CccceeCC--CCc-eeeCCCCCcCCC
Q 042973           20 HC--EGKCKNTI--GSC-TCDCPIGMYGDG   44 (152)
Q Consensus        20 ~c--~~~C~~~~--g~~-~C~C~~g~~~~~   44 (152)
                      ||  +++|.+..  .++ .|.|+.|+.+..
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~   31 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQH   31 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTT
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCcc
Confidence            56  57898863  455 899999998765

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=83.95  E-value=0.11  Score=24.99  Aligned_cols=14  Identities=0%  Similarity=0.145  Sum_probs=5.9

Q ss_pred             eeeehhhhHHHHHH
Q 042973           54 TTIVAVIGAVIFSV   67 (152)
Q Consensus        54 ~~ii~~~~~~~~~~   67 (152)
                      ..|+.++..+++++
T Consensus        13 ~~I~~~vv~Gv~ll   26 (41)
T 2k9y_A           13 LAVIGGVAVGVVLL   26 (41)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             EEEEeehhHHHHHH
Confidence            33444444444443

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=83.80  E-value=0.18  Score=23.41  Aligned_cols=6  Identities=17%  Similarity=0.324  Sum_probs=2.2

Q ss_pred             ehhhhH
Q 042973           57 VAVIGA   62 (152)
Q Consensus        57 i~~~~~   62 (152)
                      ++++..
T Consensus        11 aagVvg   16 (35)
T 1iij_A           11 IATVVG   16 (35)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=83.54  E-value=1.3  Score=34.40  Aligned_cols=41  Identities=20%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             ccccccCCCCCCCCccceeCC--CCceeeCCCCCcCCC-CCccCC
Q 042973            9 DIDECLDKEKYHCEGKCKNTI--GSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus         9 ~~~~C~~~~~~~c~~~C~~~~--g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      ..+.|.... .+|...|...+  ..|.|.|+.|+...+ +..|..
T Consensus       271 ~~n~C~~~n-g~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~  314 (619)
T 3s94_A          271 ATNPCGIDN-GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD  314 (619)
T ss_dssp             CCCTTTTTG-GGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS
T ss_pred             ccccccCCC-CcccceEECCCCCCCceEeCCchheecccCcccCC
Confidence            345564322 35777888765  469999999997765 677865

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=83.47  E-value=0.6  Score=36.87  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=17.7

Q ss_pred             Cc-ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VT-DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~-~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+ +.++|......+|  +|+|.+    +.|.|+.||.|..
T Consensus       521 Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~  557 (690)
T 3fcs_B          521 CECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYY  557 (690)
T ss_dssp             SCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSS
T ss_pred             cCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCC
Confidence            54 4455653222345  556654    4666666666543

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=83.31  E-value=0.86  Score=29.82  Aligned_cols=14  Identities=36%  Similarity=0.880  Sum_probs=12.0

Q ss_pred             CceeeCCCCCcCCC
Q 042973           31 SCTCDCPIGMYGDG   44 (152)
Q Consensus        31 ~~~C~C~~g~~~~~   44 (152)
                      ...|.|+.||.|..
T Consensus       164 P~~C~C~~Gw~G~~  177 (188)
T 2ygo_A          164 RRICECPDGFHGPH  177 (188)
T ss_dssp             TSCEECCTTCBTTT
T ss_pred             CCcccCcCCCCCCC
Confidence            45899999999877

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=81.65  E-value=1.7  Score=29.18  Aligned_cols=50  Identities=18%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++.....++.++.+.||+... ++..+++|.......... ..+.+|+.+|
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~-~~~~~E~~~l   63 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTT-YDVEREKDMM   63 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTST-TCHHHHHHHH
T ss_pred             ccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCH-HHHHHHHHHH
Confidence            3443344567777889999986 468999999864321111 3466666544

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=81.59  E-value=0.083  Score=36.65  Aligned_cols=35  Identities=14%  Similarity=0.137  Sum_probs=29.1

Q ss_pred             CcccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+..++|.+   .||  +++|.+...+|+|.|+.||.+..
T Consensus        96 c~~~~eC~s---~pC~ngG~C~~~~~sy~C~C~~Gf~G~~  132 (267)
T 4fbr_A           96 DKQNIVAVS---IKSNDGGKTLTGTTTYNGEGPIGFKSEV  132 (267)
T ss_dssp             SSCCEEEEE---EECSSTTSEEEEEEEETTSCCEEEEEEE
T ss_pred             cccccccCC---CCCCCCCEEecCCccEEeeCCCCccccC
Confidence            777778863   367  78999999999999999998854

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.33  E-value=0.49  Score=33.78  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=23.1

Q ss_pred             CCCccceeCCCCceeeCCCCCcCCCCCccCC
Q 042973           20 HCEGKCKNTIGSCTCDCPIGMYGDGKVDCRG   50 (152)
Q Consensus        20 ~c~~~C~~~~g~~~C~C~~g~~~~~~~~c~~   50 (152)
                      .|...|...++.+.|.|+.|+...++..|.+
T Consensus       313 ~C~~lCl~~~~~~~C~C~~g~~~~d~~~C~~  343 (349)
T 3v64_C          313 GCTHLCLPSGQNYTCACPTGFRKINSHACAL  343 (349)
T ss_dssp             GCSSEEECCTTSCEEECCTTEEEETTTEEEE
T ss_pred             CcccEeecCCCCCeeECCCCCcCCCCCcccc
Confidence            3666777778899999999998333677754

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=80.28  E-value=1.4  Score=32.13  Aligned_cols=26  Identities=27%  Similarity=0.728  Sum_probs=21.9

Q ss_pred             CCC--CccceeCCCCceeeCCC-CCcCCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPI-GMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~-g~~~~~   44 (152)
                      .||  +++|....+.|.|.|+. +|.+..
T Consensus       191 ~pC~n~g~C~~~~~~~~C~C~~~~~~G~~  219 (410)
T 3asi_A          191 DSCSNQGVCLQQWDGFSCDCSMTSFSGPL  219 (410)
T ss_dssp             TSSSTTCEEEECSSSEEEECTTTSEESTT
T ss_pred             ccCCCCCEecCCCCCceEeccCCcccCCC
Confidence            477  78999999999999995 887755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-09
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-08
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-08
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-08
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-08
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	7e-08
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	8e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-07
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-07
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-07
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	4e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-07
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	6e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	7e-07
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	9e-07
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	1e-06
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	1e-06
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-06
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-06
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-06
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	2e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-06
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-06
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-06
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-06
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-06
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-06
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	8e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-05
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-05
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-05
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-05
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-05
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-05
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-05
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-05
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-05
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	2e-05
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-05
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	2e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-05
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-05
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-05
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-05
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-05
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-05
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	5e-05
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	8e-05
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-05
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	9e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-04
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	1e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-04
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-04
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-04
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-04
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-04
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-04
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-04
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-04
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-04
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-04
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	0.002
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.003
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.003

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +       LG G FG V+ G    +T++AVK  K+         F  E  +
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP--DAFLAEANL 61

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           ++      LG+G FG V+ G     T++A+K  K        + F +E  +
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSP--EAFLQEAQV 65

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           K+      LG G FG V  G       +A+K  KE        EF +E  +
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKV 52

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-08
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 94  KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQ-----IAVKKPKESDKIRINQEFQKEM 148
           +++K T  + +   LG G FG+VYKG+     +     +A+K+ +E+   + N+E   E 
Sbjct: 4   RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 149 GI 150
            +
Sbjct: 63  YV 64

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 5e-08
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
                   +G G FG V+ G   +  ++A+K  +E       ++F +E  +
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEV 53

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 7e-08
 Identities = 14/37 (37%), Positives = 15/37 (40%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          TDIDEC         G+C NT G   C C  G     
Sbjct: 1  TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 8e-08
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGK 45
           D+DEC +       G+C NT GS  C+CP G    G 
Sbjct: 3  VDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGN 39

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 100 KNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +    S  LG+G FG VY+GV          T++A+K   E+  +R   EF  E  +
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 76

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           ++++   LG G  G V+K    P    +A K      K  I  +  +E+ +
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQV 57

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPDNTQ-----IAVKKPKESDKIRINQEFQKEMGI 150
                  +G G FG VYKG+L  ++      +A+K  K     +   +F  E GI
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 62

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 13/69 (18%)

Query: 95  LVKATKNYDES---------HFLGEGGFGSVYKGVLPDNTQ----IAVKKPKESDKIRIN 141
             +A + + +            +G G FG V  G L    +    +A+K  K     +  
Sbjct: 12  PNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR 71

Query: 142 QEFQKEMGI 150
           ++F  E  I
Sbjct: 72  RDFLSEASI 80

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 106 HF---LGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGI 150
           HF   +G G FG VY G L DN       AVK       I    +F  E  I
Sbjct: 30  HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGII 81

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 101 NYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGI 150
           N +    +GEG FG V++   P        T +AVK  KE     +  +FQ+E  +
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 69

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 6e-07
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 8  TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          TD++ECLD       G C NT GS  CDCP     + 
Sbjct: 1  TDVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNP 36

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQKEMGI 150
            +    H LG G +G VY+GV    +  +AVK  KE       +EF KE  +
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV--EEFLKEAAV 66

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.5 bits (104), Expect = 9e-07
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
            Y     +GEG +G VYK         A+KK   E +   I     +E+ I
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISI 53

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          DIDEC +       GKC NT GS  C CP G Y + 
Sbjct: 2  DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 37

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 1e-06
 Identities = 15/36 (41%), Positives = 16/36 (44%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          DIDEC         G C NT GS  C+CP G     
Sbjct: 1  DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 94  KLVKATKNYDESHF-LGEGGFGSVYKGVL---PDNTQIAVKKPKESDKIRINQEFQKEMG 149
           KL     N   +   LG G FGSV +GV         +A+K  K+  +    +E  +E  
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 150 I 150
           I
Sbjct: 62  I 62

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +++D    LGEG +G V   V       +AVK       +   +  +KE+ I
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICI 56

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
              Y    ++GEG +G V       +  ++A+KK    +     Q   +E+ I
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKI 59

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKKPKESDKIRINQEFQ 145
           +Y ++  +G G FG VY+  L D    +A+KK  + DK   N+E Q
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ-DKRFKNRELQ 65

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG 44
          DIDEC +     C G C N  G+  C C       G
Sbjct: 1  DIDECENGG--FCSGVCHNLPGTFECICGPDSALAG 34

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQ---IAVKKPKESDKIRINQEFQKEMGI 150
            +      +GEG FG V K  +  +      A+K+ KE      +++F  E+ +
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEV 63

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 101 NYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGI 150
                  LG G FG V +              +AVK  K S  +   +    E+ +
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPDNTQ----IAVKKPKESDKIRINQEFQKEMGI 150
             +    +GEG FG V++G+          +A+K  K      + ++F +E   
Sbjct: 8   RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALT 61

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRIN--QEFQKEMGI 150
            K + +   +G G FG+VY    + ++  +A+KK   S K      Q+  KE+  
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRF 68

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
                  +G G FG+VYKG    +  + +         ++ Q F+ E+G+
Sbjct: 9   QITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQL-QAFKNEVGV 57

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 101 NYDESHFLGEGGFGSVYKGV------LPDNTQIAVKKPKESDKIRINQEFQKEMGIVL 152
                  LG G FG V +              +AVK  KE      ++    E+ I++
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILI 71

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           N+ +   +GEG +G VYK         +A+KK   +++   +     +E+ +
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISL 54

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVK---KPKESDKIRINQEFQ 145
           +YD    LG G FG V++          A K    P ESDK  + +E Q
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQ 75

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           K       +G+G FG V  G      ++AVK  K        Q F  E  +
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA---QAFLAEASV 53

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (98), Expect = 8e-06
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 81  RKQKNFLKKWCAAKLVKAT-KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVK--KPKESD 136
           + +++FLKKW       A    +D    LG G FG V            A+K    ++  
Sbjct: 21  KAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVV 80

Query: 137 KIRINQEFQKEMGI 150
           K++  +    E  I
Sbjct: 81  KLKQIEHTLNEKRI 94

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
            Y++   +G+G FG V+K        ++A+KK   E++K        +E+ I
Sbjct: 11  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKI 62

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 108 LGEGGFGSVYKGVLPD---NTQIAVKK-PKESDKIRINQEFQKEMGI 150
           LG G FG+V KG          +AVK    E++   +  E   E  +
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANV 61

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQ 145
           +Y     LG G +  V++ + + +N ++ VK  K   K +I +E +
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIK 81

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 82  KQKNFLKKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPD------NTQIAVKKPKES 135
           ++  +  KW   +     +N +    LG G FG V             + Q+AVK  KE 
Sbjct: 24  REYEYDLKWEFPR-----ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEK 78

Query: 136 DKIRINQEFQKEMGI 150
                 +    E+ +
Sbjct: 79  ADSSEREALMSELKM 93

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
            + Y     +G G +GSV          ++AVKK  +    I   +   +E+ +
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRL 70

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           +Y+  + +G G +G   K     D   +  K+    S      Q    E+ +
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNL 56

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 88  KKWCAAKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQI-AVK--KPKESDKIRINQEF 144
           ++W         ++++    LG+G FG+VY      +  I A+K     + +K  +  + 
Sbjct: 1   RQWA-------LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 53

Query: 145 QKEMGI 150
           ++E+ I
Sbjct: 54  RREVEI 59

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQ 145
            +Y     +GEG FG +++G  L +N Q+A+K  P+ SD  ++  E++
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYR 52

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
              YD    LG G F  V           +A+K   +          + E+ +
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAV 60

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMY--GDGKVDCR 49
          +EC D     C   C N IG   C CP   +   D K +C 
Sbjct: 1  NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK-NCG 40

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
            K Y     +G+G  G+VY  + +    ++A+++     + +  +    E+ +
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK-ELIINEILV 70

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 9  DIDECL-------DKEKYHCEGKCKNTIGSCTCDCPIG--MYGDGK 45
          D+DEC        +  +  C+  C N +G   C C  G  +  D  
Sbjct: 3  DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH 48

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           + Y++   +GEG +G+V+K      +  +A+K+   + D   +     +E+ +
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICL 54

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
             Y +   +G G +G+V   V      ++A+KK  +        +   +E+ +
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRL 70

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 101 NYDESHFLGEGGFGSVYKGVLPD-NTQIAVKK-PKESDKIRINQEFQKEMGIVL 152
           ++     +G GGFG VY     D     A+K   K+  K++  +       I+L
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 58

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVK--KPKESDKIRINQEFQKEMGI 150
           +++     LG G FG V+      +    A+K  K +   +++  +    E  +
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLM 57

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 100 KNYDESHFLGEGGFGSVYKGVLPDNT----QIAVK--KPKESDKIRINQEFQKEMGI 150
           K+      LG+G FG V +G     +     +AVK  KP    +     +F +E+  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA 64

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEM 148
           NY+    LG G    V + +  P   + AVK    +     + E  +E+
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQEL 52

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQE 143
           +G+G FG V++G      ++AVK     ++    +E
Sbjct: 11  IGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFRE 45

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 99  TKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVK--KPKESDKIRINQEFQKEMGI 150
           +  Y+    LG GG   V+    L  +  +AVK  +   +        F++E   
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQN 60

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 5e-05
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 97  KATKNYDESHFLGEGGFGSVYKGV-LPDNTQIAVK--KPKESDKIRINQEFQKEMGI 150
           K  +++     LGEG F +V     L  + + A+K  + +   K        +E  +
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDV 61

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVK---KPKESDKIRINQEFQ 145
            YD    LG G FG V++ V          K    P   DK  +  E  
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEIS 78

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 107 FLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEM 148
           FLGEG F +VYK      N  +A+KK K   +        +  
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTA 47

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 108 LGEGGFGSVYKGVLPDNTQ-IAVKKPKESDKIRIN-QEFQKEMGI 150
           +G G F +VYKG+  + T  +A  + ++    +   Q F++E  +
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEM 61

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 95  LVKATKNYDESHFLGEGGFGSVYKG--VLPDNTQIAVKK-PKESDKIRINQEFQKEMGIV 151
           L +A + Y+    +GEG +G V+K   +      +A+K+   ++ +  +     +E+ ++
Sbjct: 2   LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 61

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVK--KPKESDKIRINQEFQ 145
           LG G FG V++ V          K  K K +D++ + +E  
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEIS 53

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 9e-05
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 10 IDECLDK--EKYHCEGKCKNTIGSCTCDCPIGMY--GDGK 45
          IDEC     E   C+  C N +G   C C  G     + +
Sbjct: 1  IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR 40

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKK-PKESDKIRINQEFQKEMGI 150
           K Y     +G G  G V        +  +A+KK  +        +   +E+ +
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVL 69

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 10 IDECLDKEKYHCEGKCKNTIGSCTCDCPIGMY--GDGK 45
          IDEC D +   C   C N  G   C C  G       K
Sbjct: 1  IDECQDPD--TCSQLCVNLEGGYKCQCEEGFQLDPHTK 36

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 8/42 (19%), Positives = 16/42 (38%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMG 149
           +GEG   +V+        +  VK  K         + +++ G
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYG 49

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 101 NYDESHFLGEGGFGSVYKGVLP--------DNTQIAVKKPKESDKIRINQEFQKEMGIV 151
                  LGEG FG V                T++AVK  K     +   +   EM ++
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 108 LGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG+G FG VYK    + + +A  K  ++      +++  E+ I
Sbjct: 20  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDI 62

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 10 IDECLDK--EKYHCEGKCKNTIGSCTCDCPIG--MYGDGKVDCRG 50
          +DEC     +   C+  C N +G   C C +G  ++ +    C  
Sbjct: 1  VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKH-TCSA 44

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 100 KNYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRIN--QEFQKEMGI 150
            ++D    LG+G FG V            A+K  ++   I  +       E  +
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRV 58

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 2e-04
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 9  DIDECLDKEKY-HCEGKCKNTIGSCTCDCPIGMYGD 43
          D+DEC          GKC NT+GS  C C  G  G 
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 101 NYDESHFLGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEM 148
           ++     LG+G FG V+       N   A+K  K+ D + ++ + +  M
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKK-DVVLMDDDVECTM 50

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           +G G FG +Y G  +    ++A+K      K   + +   E  I
Sbjct: 15  IGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKI 55

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVK-----KPKESDKIRINQEFQKEMGI 150
           YD    LG G F  V K        Q A K     + K S +    ++ ++E+ I
Sbjct: 12  YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 66

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 100 KNYDESHFLGEGGFGSVYKGVL----PDNTQIAVK---KPKESDKIRINQEFQKEMGI 150
           +N++    LG G +G V+              A+K   K     K +  +  + E  +
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQV 81

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 102 YDESHFLGEGGFGSVYKGV-LPDNTQIAVK-----KPKESDKIRINQEFQKEMGI 150
           Y     LG GGFGSVY G+ + DN  +A+K     +  +  ++        E+ +
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVL 60

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIR 139
           LG G  G V +        + A+K  ++  K R
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKAR 52

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 108 LGEGGFGSVYKGV-LPDNTQIAVKKPKESDKIRINQEFQKEMGI 150
           LG G F +V+    + +NT +A+K  +        +  + E+ +
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYT--EAAEDEIKL 62

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.1 bits (73), Expect = 0.002
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 25 CKNTIGSCTCDCPIGMYGDGKV 46
          C++      C C     G+G+ 
Sbjct: 15 CRDYATGFCCRCVANYTGNGRQ 36

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.003
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGD 43
          D D+C      +  G CK+ I S  C CP G  G 
Sbjct: 2  DGDQCESNPCLN-GGSCKDDINSYECWCPFGFEGK 35

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 31.6 bits (72), Expect = 0.003
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 9  DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGD 43
          D D+C      +  G CK+ + S  C C     G 
Sbjct: 1  DGDQCASSPCQN-GGSCKDQLQSYICFCLPAFEGR 34

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.6 bits (72), Expect = 0.003
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDC 48
          +ECLD     C   C +      C CP G     +  C
Sbjct: 3  NECLD-NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.88
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.87
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.85
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.82
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.72
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.7
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.69
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.68
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	98.66
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.65
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.63
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.6
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.57
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.53
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.53
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.5
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.47
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	98.47
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	98.46
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	98.45
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.43
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.43
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	98.39
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.38
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.36
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	98.35
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.33
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.32
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.32
d1nt0a3	45	Mannose-binding protein associated serine protease	98.29
d1szba2	45	Mannose-binding protein associated serine protease	98.29
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	98.27
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	98.25
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.25
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.25
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	98.24
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.24
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.23
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.22
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	98.19
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	98.18
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	98.17
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.16
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.16
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.16
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	98.15
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.14
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	98.14
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.12
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.1
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	98.09
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	98.07
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	98.05
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.03
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	98.02
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	98.0
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	97.99
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	97.97
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	97.96
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	97.88
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	97.86
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.85
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	97.85
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.84
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	97.77
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	97.76
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.75
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	97.67
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.63
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.61
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.54
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.5
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.48
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.35
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.31
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.61
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	96.59
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	96.35
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.27
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.26
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.22
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	96.21
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.16
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	96.04
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	95.6
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	95.59
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.08
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	93.55
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	90.98
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	90.6
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	88.74
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	85.42
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	84.84
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	81.24

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=4.4e-10  Score=78.08  Aligned_cols=61  Identities=30%  Similarity=0.447  Sum_probs=48.4

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +.+|+.++++|...+.||+|+||.||+|++.      ++..||||+++.....+..++|.+|+++|+
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~   71 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMA   71 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHH
Confidence            4567777788888899999999999999863      346899999976555444478999998873

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.7e-10  Score=79.20  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++|+...++|...+.||+|+||+||+|.+.++..||||+++......  ++|.+|+.+|+
T Consensus         6 ~~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~--~~~~~E~~~l~   63 (272)
T d1qpca_           6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSP--DAFLAEANLMK   63 (272)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCH--HHHHHHHHHHH
T ss_pred             CCeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCH--HHHHHHHHHHH
Confidence            34544556666677899999999999999888899999997644332  78999998763

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=9.7e-10  Score=76.33  Aligned_cols=66  Identities=21%  Similarity=0.358  Sum_probs=48.1

Q ss_pred             hHhhhHHHHHHhhhCCCc---------cCeecccCCceeeeEEcCC-C---CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           87 LKKWCAAKLVKATKNYDE---------SHFLGEGGFGSVYKGVLPD-N---TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~---------~~~ig~g~~g~Vy~g~~~~-~---~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ...++++++..++.+|+.         .++||+|+||+||+|.+.. +   ..||||.+.........++|.+|+.+|+
T Consensus         4 ~d~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~   82 (299)
T d1jpaa_           4 IDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMG   82 (299)
T ss_dssp             CCGGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHH
Confidence            345677777777766643         3579999999999998743 2   2689999876544444478999998874

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.2e-09  Score=74.30  Aligned_cols=50  Identities=30%  Similarity=0.382  Sum_probs=41.5

Q ss_pred             hCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ++|...+.||+|+||+||+|+++++..||||+++......  ++|.+|+.+|
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~--~~~~~Ev~~~   53 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSE--DEFIEEAKVM   53 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCH--HHHHHHHHHH
Confidence            4566678899999999999999888899999997644332  7899999876

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.6e-09  Score=53.08  Aligned_cols=37  Identities=41%  Similarity=0.855  Sum_probs=31.7

Q ss_pred             CcccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC
Q 042973            7 VTDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         7 C~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.|+|||..+. ..|++.|.|.+|+|.|.|++||..++
T Consensus         2 CvDidEC~~~~-~~~~~~C~Nt~Gsy~C~C~~Gy~~~g   38 (43)
T d1emoa1           2 AVDMDECKEPD-VCKHGQCINTDGSYRCECPFGYILAG   38 (43)
T ss_dssp             CCCCCSSSSTT-SCSSSCCCCCSSCCCCCCCTTEEESS
T ss_pred             CcceeccCCcC-CCCCCEeECCCCCeEeECCCCcccCC
Confidence            78999998654 34688999999999999999998754

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-09  Score=53.30  Aligned_cols=40  Identities=48%  Similarity=0.948  Sum_probs=32.0

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      +|+|||.... .+| ++.|.|.+|+|.|.|+.||..+. ...|
T Consensus         1 qDinEC~~~~-~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~C   42 (43)
T d1uzka2           1 EDIDECQELP-GLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC   42 (43)
T ss_dssp             EECCHHHHCG-GGGBTSEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred             CCcccccCCC-CCcCCCEEECCCCCeEeECCCCCeECcCCCcc
Confidence            5899998543 345 78999999999999999998766 4445

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.5e-09  Score=71.57  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=40.0

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||+|.+.++..||||+++......  ++|.+|+.+|
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~--~~~~~E~~~l   54 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSE--EDFIEEAEVM   54 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCH--HHHHHHHHHH
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcH--HHHHHHHHHH
Confidence            455567899999999999999888899999997644332  7899999876

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.9e-09  Score=51.72  Aligned_cols=40  Identities=45%  Similarity=0.880  Sum_probs=32.7

Q ss_pred             cccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            8 TDIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         8 ~~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      +|+|||..+. ..|++.|.|..|+|.|.|++||..+. +..|
T Consensus         1 TDidEC~~~~-~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C   41 (43)
T d1uzka1           1 TDVNECLDPT-TCISGNCVNTPGSYICDCPPDFELNPTRVGC   41 (43)
T ss_dssp             CCCCGGGSTT-SSBTSEEEEETTEEEEECCTTCEECTTSSBE
T ss_pred             CCccccCCCC-cCcCCEeECCCCCEEEecCCCCEECCCCCcc
Confidence            5899998654 34699999999999999999998776 4445

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.5e-09  Score=51.91  Aligned_cols=36  Identities=42%  Similarity=0.729  Sum_probs=30.1

Q ss_pred             cccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|+|||.... .+| ++.|.|..|+|.|.|+.||.++.
T Consensus         1 TDidEC~~~~-~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           1 TDIDECRISP-DLCGRGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CCCCTTTTCS-STTTTSCEEEETTEEEECCCSSEEECT
T ss_pred             CcccccCCCC-CCCCCCEeEcCCCCeEEeCCCCCccCC
Confidence            5899997643 456 77999999999999999998864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.2e-09  Score=75.47  Aligned_cols=58  Identities=33%  Similarity=0.475  Sum_probs=44.1

Q ss_pred             HHHHHhhhCCCccCeecccCCceeeeEEcC-CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           93 AKLVKATKNYDESHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        93 ~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++|+...++|...+.||+|+||+||+|.+. .++.||||+++..... . ++|.+|+.+|+
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~-~-~~~~~E~~il~   68 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-V-EEFLKEAAVMK   68 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSC-H-HHHHHHHHHHH
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccch-H-HHHHHHHHHHH
Confidence            445544556666788999999999999884 4788999999754433 2 78999998763

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.2e-09  Score=71.98  Aligned_cols=51  Identities=31%  Similarity=0.547  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEcCCC-----CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDN-----TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~-----~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...++||+|+||+||+|.+...     ..||||+++.........+|.+|+.+|
T Consensus         8 ~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il   63 (283)
T d1mqba_           8 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIM   63 (283)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHH
Confidence            466678999999999999998442     369999997654444437899999876

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.4e-09  Score=73.80  Aligned_cols=51  Identities=25%  Similarity=0.408  Sum_probs=41.3

Q ss_pred             hhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+++...+.||+|+||+||+|.++++..||||+++..... . ++|.+|+.+|
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~-~-~~~~~E~~~l   66 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-P-EAFLQEAQVM   66 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC-H-HHHHHHHHHH
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCC-H-HHHHHHHHHH
Confidence            3456667789999999999999988889999999754433 2 7899999876

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-09  Score=74.13  Aligned_cols=59  Identities=32%  Similarity=0.496  Sum_probs=43.5

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|+...+.|...+.||+|+||+||+|.+.      .++.||||+++..........|.+|+.+|+
T Consensus        14 ~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~   78 (308)
T d1p4oa_          14 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMK   78 (308)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGG
T ss_pred             ceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHH
Confidence            34444456666778999999999999873      256899999976544444478999998874

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.8e-09  Score=50.96  Aligned_cols=34  Identities=38%  Similarity=0.705  Sum_probs=29.7

Q ss_pred             ccccccCCCCCCCCccceeCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+|||..+  .+|...|.|..|+|.|.|++||...+
T Consensus         1 DidEC~~~--~~C~~~C~N~~Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           1 DIDECENG--GFCSGVCHNLPGTFECICGPDSALAG   34 (40)
T ss_dssp             ECCHHHHC--SSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             CccccCCC--cCccCEeeCCCCCeEeECCCCCeeCC
Confidence            68999754  57999999999999999999998764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.1e-09  Score=72.63  Aligned_cols=52  Identities=31%  Similarity=0.425  Sum_probs=38.6

Q ss_pred             CCCccCe-ecccCCceeeeEEcC---CCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHF-LGEGGFGSVYKGVLP---DNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~-ig~g~~g~Vy~g~~~---~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      ++...++ ||+|+||.||+|.+.   ++..||||.++........++|.+|+.+|+
T Consensus         9 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~   64 (285)
T d1u59a_           9 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH   64 (285)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             CeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHH
Confidence            3444454 999999999999873   345799999976554443488999998873

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.5e-09  Score=50.15  Aligned_cols=39  Identities=44%  Similarity=0.863  Sum_probs=31.0

Q ss_pred             ccccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC-CCcc
Q 042973            9 DIDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus         9 ~~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      |+|||.... ..| ++.|.|+.|+|.|.|++||..++ ...|
T Consensus         1 DidEC~~~~-~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C   41 (42)
T d1lmja2           1 DIDECQRDP-LLCRGGVCHNTEGSYRCECPPGHQLSPNISAC   41 (42)
T ss_dssp             ECCHHHHCS-STTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             CccccCCCC-CCCCCCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence            689997543 356 77999999999999999998765 4444

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.1e-08  Score=48.79  Aligned_cols=36  Identities=44%  Similarity=0.873  Sum_probs=30.8

Q ss_pred             cccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            8 TDIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         8 ~~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|++||... ..||  +++|.+..++|.|.|++||.|..
T Consensus         1 qDideC~~~-~~pC~n~g~C~n~~g~y~C~C~~G~~G~~   38 (42)
T d2vj3a1           1 QDVDECSLG-ANPCEHAGKCINTLGSFECQCLQGYTGPR   38 (42)
T ss_dssp             CCCCTTTSS-SCSSSTTCEEEECSSSEEEECCTTEESTT
T ss_pred             CCCccccCC-CCCCCCCcEeECCCCCEEeECCCCCcCCC
Confidence            589999753 3588  88999999999999999999865

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.7e-08  Score=69.19  Aligned_cols=56  Identities=27%  Similarity=0.463  Sum_probs=42.0

Q ss_pred             HHHHhhhCCCccCeecccCCceeeeEEcCCCCEEEEEecCCc--chhHHHHHHHHHHhhhC
Q 042973           94 KLVKATKNYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES--DKIRINQEFQKEMGIVL  152 (152)
Q Consensus        94 ~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~--~~~~~~~~f~~E~~~ls  152 (152)
                      ||+...++|...+.||+|+||+||+|.+.  ..||||+++..  +.... ++|.+|+.+|+
T Consensus         2 dwei~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~-~~~~~E~~~l~   59 (276)
T d1uwha_           2 DWEIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQL-QAFKNEVGVLR   59 (276)
T ss_dssp             CCBCCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHH-HHHHHHHHHHT
T ss_pred             CcccccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHH-HHHHHHHHHHH
Confidence            34444566777889999999999999984  36999999643  22333 78999998874

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.1e-08  Score=69.87  Aligned_cols=48  Identities=35%  Similarity=0.484  Sum_probs=36.5

Q ss_pred             cCeecccCCceeeeEEcCCC----CEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLPDN----TQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~----~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .++||+|+||+||+|.+.+.    ..||||+++........++|.+|+++|+
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~   83 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK   83 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHH
Confidence            46899999999999998542    2689999975444433388999998763

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-08  Score=68.76  Aligned_cols=47  Identities=28%  Similarity=0.403  Sum_probs=37.5

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      |...+.||+|+||.||+|.+ .|..||||+++....  . ++|.+|+.+|+
T Consensus         9 ~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~~--~-~~~~~E~~~l~   55 (262)
T d1byga_           9 LKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDAT--A-QAFLAEASVMT   55 (262)
T ss_dssp             EEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC-----HHHHHTHHHHT
T ss_pred             eEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHHH--H-HHHHHHHHHHH
Confidence            44467899999999999999 578999999965432  2 77999998874

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-08  Score=70.37  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=42.5

Q ss_pred             HHHhhhCCCccCeecccCCceeeeEEc------CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           95 LVKATKNYDESHFLGEGGFGSVYKGVL------PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        95 l~~~~~~~~~~~~ig~g~~g~Vy~g~~------~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |+...+.+...+.||+|+||.||+|++      ..+..||||+++.........+|.+|+.++
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~   80 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL   80 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHH
Confidence            333445566677899999999999986      335689999997655544447899998775

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.2e-08  Score=47.79  Aligned_cols=38  Identities=37%  Similarity=0.756  Sum_probs=31.4

Q ss_pred             cccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           10 IDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        10 ~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|||..+  .+|...|.|..|+|.|.|++||..+. +..|+
T Consensus         1 idEC~~~--~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2           1 IDECQDP--DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK   39 (41)
T ss_dssp             CCTTTTT--TSCSSCEECSSSCCEECCCTTEEECTTTCCEE
T ss_pred             CccCCCC--CCCCCEeECCCCCEEeECCCCCeECCCCCccc
Confidence            5789753  57999999999999999999998765 55564

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.47  E-value=4.7e-08  Score=67.01  Aligned_cols=52  Identities=27%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             CCCccCeecccCCceeeeEEcCCCCEEEEEecCCcchh-HHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKESDKI-RINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~~~~-~~~~~f~~E~~~ls  152 (152)
                      .|..-+.||+|+||+||++..+++..||||+++..... ...+.|.+|+.+|+
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~   55 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK   55 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGG
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHH
Confidence            34445789999999999999988999999999654322 11278999998874

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.9e-08  Score=69.39  Aligned_cols=54  Identities=22%  Similarity=0.295  Sum_probs=41.9

Q ss_pred             hhCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .++|...+.||+|+||+||++.. .+|..||+|+++........+.|.+|+.+|+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~   59 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH   59 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGG
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHH
Confidence            34566677899999999999986 5688999999965433333378999998874

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3e-08  Score=67.64  Aligned_cols=53  Identities=23%  Similarity=0.403  Sum_probs=40.6

Q ss_pred             hhCCCccCeecccCCceeeeEEcCC----CCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLPD----NTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~~----~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|...+.||+|+||.||+|.+..    +..||||.++........+.|.+|+.+|
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l   62 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM   62 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHH
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            3455567789999999999998743    3469999997655555447899999876

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.1e-08  Score=67.76  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             HHHHHHhhhCCCccCeecccCCceeeeEEcC------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           92 AAKLVKATKNYDESHFLGEGGFGSVYKGVLP------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        92 ~~~l~~~~~~~~~~~~ig~g~~g~Vy~g~~~------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .++|+...++|...+.||+|+||.||+|.+.      .++.||||+++........+.|.+|...|
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l   70 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL   70 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHH
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHH
Confidence            3445445566777789999999999999862      24579999997655444336787777654

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.5e-08  Score=49.74  Aligned_cols=42  Identities=31%  Similarity=0.758  Sum_probs=31.6

Q ss_pred             cccccccCCCC-------CCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973            8 TDIDECLDKEK-------YHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus         8 ~~~~~C~~~~~-------~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      .|+|||.....       .+|...|.|.+|+|.|.|+.||..+. +..|+
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            47899975332       22466899999999999999998655 55564

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.3e-08  Score=46.84  Aligned_cols=39  Identities=31%  Similarity=0.695  Sum_probs=31.3

Q ss_pred             ccccCCCCCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           11 DECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        11 ~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      |||......+|...|.|.+|+|.|.|+.||.... +..|.
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeec
Confidence            5887544468988999999999999999998765 66665

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.6e-08  Score=67.91  Aligned_cols=52  Identities=25%  Similarity=0.432  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEcCC-CC--EEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVLPD-NT--QIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~~-~~--~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||+|.+.+ +.  .||||+++........++|.+|+.+|+
T Consensus        11 ~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~   65 (309)
T d1fvra_          11 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC   65 (309)
T ss_dssp             GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHT
T ss_pred             HcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHH
Confidence            44456789999999999999844 32  588999865444333378999998874

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.2e-08  Score=67.15  Aligned_cols=51  Identities=29%  Similarity=0.601  Sum_probs=35.8

Q ss_pred             CCCccCeecccCCceeeeEEcC-CCC----EEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVLP-DNT----QIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~~-~~~----~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...++||+|+||+||+|.+. +|+    .||+|+++........++|.+|+.+|
T Consensus        10 dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   65 (317)
T d1xkka_          10 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM   65 (317)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHH
T ss_pred             HCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            4666679999999999999873 343    58999997554433337899999876

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.9e-07  Score=63.60  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      ++|...+.||+|+||+||++.. .+|..||||.++.... ....+.|.+|+.+|+
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~   58 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLR   58 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHH
Confidence            3455567899999999999986 5688999999865432 222377999998874

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=9.1e-08  Score=65.44  Aligned_cols=46  Identities=30%  Similarity=0.434  Sum_probs=33.5

Q ss_pred             CeecccCCceeeeEEcCC---CCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          106 HFLGEGGFGSVYKGVLPD---NTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~~~---~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.||+|+||+||+|.+.+   +..||||+++.... ....++|.+|+.+|
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il   62 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM   62 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHH
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHH
Confidence            469999999999998743   35799999964322 22237899999886

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.9e-07  Score=65.70  Aligned_cols=51  Identities=24%  Similarity=0.419  Sum_probs=36.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||+||++.- .+|+.||||+++........+.+.+|+.+|
T Consensus         9 rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il   60 (345)
T d1pmea_           9 RYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL   60 (345)
T ss_dssp             TEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHH
Confidence            355557899999999999974 568999999997544433337899999876

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.1e-07  Score=64.13  Aligned_cols=50  Identities=16%  Similarity=0.353  Sum_probs=39.7

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||+||++.- .+|+.||||+++....... +.|.+|+.+|
T Consensus        21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~-~~~~~E~~il   71 (293)
T d1yhwa1          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKK-ELIINEILVM   71 (293)
T ss_dssp             TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCH-HHHHHHHHHH
T ss_pred             ccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHH-HHHHHHHHHH
Confidence            466677899999999999985 5689999999865443333 7799999876

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.8e-08  Score=65.66  Aligned_cols=50  Identities=24%  Similarity=0.397  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||+||++.. .++..||||.++..+.... +.|.+|+++|
T Consensus        13 ~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~-~~~~~E~~il   63 (288)
T d2jfla1          13 FWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEEL-EDYMVEIDIL   63 (288)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGG-GGTHHHHHHH
T ss_pred             CeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHH-HHHHHHHHHH
Confidence            344456799999999999986 4588999999976554444 7899999876

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7.8e-08  Score=65.62  Aligned_cols=51  Identities=27%  Similarity=0.392  Sum_probs=36.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. .+|+.||||.++........+.|.+|+.+|
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l   57 (271)
T d1nvra_           6 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN   57 (271)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHH
T ss_pred             ceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHH
Confidence            344567899999999999986 468899999986544333236799999876

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.8e-07  Score=64.91  Aligned_cols=52  Identities=27%  Similarity=0.353  Sum_probs=39.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~ls  152 (152)
                      .|...+.||+|+||+||++.. .++..||||.++....  ....++|.+|+.+|+
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~   70 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ   70 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHH
Confidence            356567899999999999985 5688999999864332  222267999998874

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.1e-07  Score=46.81  Aligned_cols=40  Identities=30%  Similarity=0.724  Sum_probs=29.1

Q ss_pred             cccccCCC--CCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           10 IDECLDKE--KYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        10 ~~~C~~~~--~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|||....  ..+|...|.|.+|+|.|.|++||.... +..|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccc
Confidence            57886532  356888999999999999999997655 55564

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-07  Score=46.04  Aligned_cols=40  Identities=33%  Similarity=0.711  Sum_probs=31.1

Q ss_pred             cccccCCC--CCCCCccceeCCCCceeeCCCCCcCCC-CCccC
Q 042973           10 IDECLDKE--KYHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCR   49 (152)
Q Consensus        10 ~~~C~~~~--~~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~   49 (152)
                      +|||....  .++|...|.|.+|+|.|.|++||.... +..|.
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~   43 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS   43 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCcc
Confidence            57887543  235788999999999999999998655 55564

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=98.27  E-value=2.7e-07  Score=65.16  Aligned_cols=50  Identities=24%  Similarity=0.319  Sum_probs=40.2

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.. .+|..||||++........ +.|.+|+.+|
T Consensus        27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~-~~~~~E~~il   77 (350)
T d1koaa2          27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDK-ETVRKEIQTM   77 (350)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHH-HHHHHHHHHH
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhH-HHHHHHHHHH
Confidence            455567899999999999986 4688999999976555544 7899999876

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.8e-07  Score=40.40  Aligned_cols=36  Identities=39%  Similarity=0.859  Sum_probs=29.6

Q ss_pred             ccccCCCCCCC-CccceeCCCCceeeCCCCCcCCCCCcc
Q 042973           11 DECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDGKVDC   48 (152)
Q Consensus        11 ~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~~~~c   48 (152)
                      |||.-.  +|| +++|.|..|+|.|.|.+|+...+...|
T Consensus         2 dECsig--npCGnGTCtNviGgFec~C~~GFepgpmm~C   38 (39)
T d1emoa2           2 DECSVG--NPCGNGTCKNVIGGFECTCEEGFEPGPMMTC   38 (39)
T ss_dssp             CGGGTT--CSSSSSCEEECSSSEEECCSSSSCCCSSSCC
T ss_pred             CccccC--CccCCceeeecccceEEeecCCcCCCcceec
Confidence            678753  589 999999999999999999987664444

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.8e-07  Score=63.05  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=27.9

Q ss_pred             CCccCeecccCCceeeeEEcCCCCEEEEEecCCc
Q 042973          102 YDESHFLGEGGFGSVYKGVLPDNTQIAVKKPKES  135 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~~  135 (152)
                      +...+.||+|+||.||+|++ +|..||||+++..
T Consensus         5 ~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~   37 (303)
T d1vjya_           5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR   37 (303)
T ss_dssp             EEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG
T ss_pred             EEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc
Confidence            34467899999999999998 6889999999654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.5e-07  Score=61.25  Aligned_cols=48  Identities=23%  Similarity=0.388  Sum_probs=36.6

Q ss_pred             cCeecccCCceeeeEEcC-CCCEEEEEecCCcc-hhHHHHHHHHHHhhhC
Q 042973          105 SHFLGEGGFGSVYKGVLP-DNTQIAVKKPKESD-KIRINQEFQKEMGIVL  152 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~-~~~~vavK~l~~~~-~~~~~~~f~~E~~~ls  152 (152)
                      .+.||+|+||+||++... .+..||+|.++... .....+.|.+|+++|+
T Consensus        14 ~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~   63 (270)
T d1t4ha_          14 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK   63 (270)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHT
T ss_pred             eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHH
Confidence            457999999999999874 57899999985432 2222378999998874

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.8e-07  Score=62.78  Aligned_cols=52  Identities=23%  Similarity=0.418  Sum_probs=37.8

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhH-HHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIR-INQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~-~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||+||++.. .+++.||||.++...... ..+.|.+|+.+|+
T Consensus         3 ~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~   56 (298)
T d1gz8a_           3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLK   56 (298)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHT
T ss_pred             CCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHH
Confidence            455567899999999999985 568999999996433221 1278999998874

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.2e-07  Score=61.27  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=38.3

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhhC
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIVL  152 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~ls  152 (152)
                      |..-+.||+|+||+||+++. .+++.||||+++.... ......+.+|+.+|+
T Consensus         4 y~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~   56 (292)
T d1unla_           4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK   56 (292)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHT
T ss_pred             CEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHH
Confidence            44457899999999999986 5688999999854322 222278999998874

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.24  E-value=5.1e-07  Score=63.72  Aligned_cols=51  Identities=24%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~ls  152 (152)
                      .|...+.||+|+||.||++.- .+|..||||.++....... ..+.+|+.+|+
T Consensus        30 ~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~-~~~~~Ei~il~   81 (352)
T d1koba_          30 YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK-YTVKNEISIMN   81 (352)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHH-HHHHHHHHHHT
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHH-HHHHHHHHHHH
Confidence            355567899999999999985 5689999999976554444 78899998874

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=7.1e-08  Score=66.97  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||+||++.. .+++.||||.+...........|.+|+.+|
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il   61 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL   61 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHH
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHH
Confidence            3455667899999999999986 458899999996544333336788898876

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.8e-07  Score=65.36  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             hhhCCCccCeecccCCceeeeEEcCCC------CEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           98 ATKNYDESHFLGEGGFGSVYKGVLPDN------TQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        98 ~~~~~~~~~~ig~g~~g~Vy~g~~~~~------~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      ..++|...+.||+|+||+||+|++...      ..||||.+...........|.+|+.+|
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l   94 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM   94 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHH
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHH
Confidence            345566678899999999999987331      269999996544433337899998776

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=4.9e-07  Score=61.58  Aligned_cols=51  Identities=22%  Similarity=0.233  Sum_probs=38.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||+||++.- .+++.||||.++....  ......|.+|+.+|
T Consensus         8 rY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l   61 (277)
T d1o6ya_           8 RYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNA   61 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHH
T ss_pred             eeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHH
Confidence            355567899999999999985 5688999999964332  22226799999876

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.6e-07  Score=62.96  Aligned_cols=50  Identities=26%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             CCccCeecccCCceeeeEEcC--CC--CEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVLP--DN--TQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~~--~~--~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||.||+|.+.  .+  ..||||+++....  ....++|.+|+.+|
T Consensus        10 ~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l   65 (273)
T d1u46a_          10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM   65 (273)
T ss_dssp             EEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHH
T ss_pred             eEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHH
Confidence            444567999999999999872  22  3789999964322  22227899999876

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=9.2e-07  Score=61.97  Aligned_cols=52  Identities=23%  Similarity=0.350  Sum_probs=39.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||+||++.- .+|+.||||+++.... ....+.+.+|+.+|
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il   71 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL   71 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHH
Confidence            3455567899999999999984 5689999999964332 22226788999876

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.16  E-value=6.6e-07  Score=62.28  Aligned_cols=47  Identities=26%  Similarity=0.525  Sum_probs=36.6

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||+++- .+++.||||+++....    +.+.+|+.+|
T Consensus        36 ~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~----~~~~~Ei~il   83 (328)
T d3bqca1          36 DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK----KKIKREIKIL   83 (328)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCH----HHHHHHHHHH
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHH----HHHHHHHHHH
Confidence            344556899999999999986 5688999999975432    5678888765

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.6e-07  Score=61.80  Aligned_cols=52  Identities=27%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-----hHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-----IRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-----~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||+||++.. .+|..||||.++....     ....+.|.+|+.+|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il   67 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL   67 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHH
Confidence            3455567899999999999986 5688999999843211     11127899999876

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.2e-07  Score=43.39  Aligned_cols=38  Identities=29%  Similarity=0.613  Sum_probs=30.7

Q ss_pred             cccccCCCCCCCCccceeCCCCceeeCCCCCcCCCCCcc
Q 042973           10 IDECLDKEKYHCEGKCKNTIGSCTCDCPIGMYGDGKVDC   48 (152)
Q Consensus        10 ~~~C~~~~~~~c~~~C~~~~g~~~C~C~~g~~~~~~~~c   48 (152)
                      .|||... ..+|...|.|.+++|.|.|++||...++..|
T Consensus         2 ~neC~~~-nggC~h~C~n~~g~~~C~C~~Gy~L~d~~tC   39 (40)
T d3bpse1           2 TNECLDN-NGGCSHVCNDLKIGYECLCPDGFQLVAQRRC   39 (40)
T ss_dssp             SCGGGTG-GGGCSSEEEECSSSEEEECCTTCCEETTTEE
T ss_pred             cccCCCC-CCCCcCEEEcCCCCEEEECCCCCEECCCCcC
Confidence            5789753 3578889999999999999999987655555

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.2e-07  Score=62.13  Aligned_cols=51  Identities=24%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. .+|+.||||+++.... .....++.+|+.+|
T Consensus        11 rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il   63 (318)
T d3blha1          11 KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL   63 (318)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHH
T ss_pred             CEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH
Confidence            455567899999999999986 5689999999853322 11226788898776

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1e-06  Score=61.38  Aligned_cols=48  Identities=27%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||+||++.. .++..||||.++......  ..+.+|+.+|
T Consensus         7 Y~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~--~~~~~Ei~il   55 (321)
T d1tkia_           7 YMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ--VLVKKEISIL   55 (321)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHH--HHHHHHHHHH
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccH--HHHHHHHHHH
Confidence            44567899999999999986 457899999997654332  6788998876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.1e-07  Score=63.38  Aligned_cols=53  Identities=26%  Similarity=0.274  Sum_probs=32.9

Q ss_pred             hhCCCccCeecccCCceeeeEEcC--------CCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973           99 TKNYDESHFLGEGGFGSVYKGVLP--------DNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus        99 ~~~~~~~~~ig~g~~g~Vy~g~~~--------~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .+.|...+.||+|+||.||+++..        .+..||||+++.........+|.+|+..|
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l   72 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM   72 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHH
Confidence            345555678999999999999752        23479999997655443337788887654

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.12  E-value=6.8e-07  Score=41.89  Aligned_cols=33  Identities=33%  Similarity=0.720  Sum_probs=28.3

Q ss_pred             ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+|+|..   .||  +++|.+..++|.|.|++||.|..
T Consensus         1 D~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~G~~   35 (37)
T d2c4fl1           1 DGDQCAS---SPCQNGGSCKDQLQSYICFCLPAFEGRN   35 (37)
T ss_dssp             TCCGGGG---CCCCTTCEEEEETTEEEEECCTTEESTT
T ss_pred             CcccCCC---CCCCCCCEEECCCCCeEEECCCCCcCCC
Confidence            5788863   578  88999999999999999999864

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-06  Score=41.56  Aligned_cols=33  Identities=42%  Similarity=0.939  Sum_probs=28.5

Q ss_pred             ccccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973            9 DIDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus         9 ~~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |.|+|..   .||  +++|.+..++|.|.|+.||.|..
T Consensus         2 d~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~G~~   36 (39)
T d1edmb_           2 DGDQCES---NPCLNGGSCKDDINSYECWCPFGFEGKN   36 (39)
T ss_dssp             CCCTTTT---CCCCTTCEEEEETTEEEEECCTTCCSTT
T ss_pred             ccccCCC---CCCCCCcEEEcCCCCEEEECCCCCCCCC
Confidence            6788863   578  78999999999999999999865

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=60.91  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcc-hhHHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESD-KIRINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~-~~~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||+||++.- .+|+.||||+++... .....+.+.+|+.+|
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il   71 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL   71 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHH
Confidence            3444456799999999999985 568999999996432 222226788999876

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.7e-07  Score=61.08  Aligned_cols=51  Identities=18%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. .++..||||.++....  ....+.|.+|+.+|
T Consensus         9 dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il   62 (288)
T d1uu3a_           9 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM   62 (288)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHH
Confidence            455577899999999999986 4688999999854321  11126789998876

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=6.1e-07  Score=61.68  Aligned_cols=48  Identities=25%  Similarity=0.411  Sum_probs=35.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||.||+|.. .+++.||||.+......   .++..|+++|
T Consensus         8 rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~---~~~~~E~~i~   56 (299)
T d1ckia_           8 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH---PQLHIESKIY   56 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTS---CCHHHHHHHH
T ss_pred             EEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccC---HHHHHHHHHH
Confidence            355567899999999999986 55889999988654322   4466676654

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-06  Score=59.27  Aligned_cols=51  Identities=22%  Similarity=0.395  Sum_probs=37.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. .+++.||+|.++....  ....+.|.+|+.+|
T Consensus         7 dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il   60 (263)
T d2j4za1           7 DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ   60 (263)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHH
Confidence            355567899999999999987 4588999999854322  12236788998876

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.8e-06  Score=60.75  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch-hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK-IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~-~~~~~~f~~E~~~l  151 (152)
                      .|...+.||+|+||+||+|.. ..|+.||||+++.... ......+.+|+.+|
T Consensus        18 ~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il   70 (355)
T d2b1pa1          18 RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM   70 (355)
T ss_dssp             TEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHH
Confidence            455557899999999999985 4589999999964322 22226788998876

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.2e-06  Score=60.83  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=37.9

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.. .+|..||||+++....  ....+.|.+|+.+|
T Consensus         5 dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il   58 (316)
T d1fota_           5 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML   58 (316)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             HeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHH
Confidence            344567899999999999986 5589999999864321  11226788998876

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.7e-06  Score=40.25  Aligned_cols=32  Identities=31%  Similarity=0.800  Sum_probs=27.2

Q ss_pred             cccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           10 IDECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        10 ~~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +|+|..   .||  +++|.+..++|.|.|+.||.|..
T Consensus         1 Id~C~~---~PC~n~g~C~~~~~~y~C~C~~G~~G~~   34 (39)
T d2vj3a2           1 VNECVS---NPCQNDATCLDQIGEFQCICMPGYEGVH   34 (39)
T ss_dssp             CCTTTT---CCCCSSCEEEECSSCEEEECCTTEESSS
T ss_pred             CcCCcC---CCCCCCCEEECCCCCEEEeCCCCCccCc
Confidence            467853   478  78999999999999999999876

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=1.8e-06  Score=60.79  Aligned_cols=52  Identities=21%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchh--HHHHHHHHHHhhhC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKI--RINQEFQKEMGIVL  152 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~--~~~~~f~~E~~~ls  152 (152)
                      +|...+.||+|+||.||++.. .+|..||||+++.....  ...+.+.+|+.+|+
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~   96 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ   96 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHH
Confidence            344456899999999999986 46899999998542211  11267899998774

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.8e-06  Score=59.62  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=35.3

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCcchhHHHHHHHHHHhhh
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDKIRINQEFQKEMGIV  151 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~~~~~~~f~~E~~~l  151 (152)
                      |...+.||+|+||+||+++. .+|+.||||+++..... . +.+.+|+.+|
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~-~-~~~~~Ei~~l   63 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-T-EAAEDEIKLL   63 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHH-H-HHHHHHHHHH
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccc-h-HHHHHHHHHH
Confidence            44467899999999999985 56899999999754322 2 5566666543

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.96  E-value=2.7e-06  Score=57.96  Aligned_cols=51  Identities=25%  Similarity=0.353  Sum_probs=37.5

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--------hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--------IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--------~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.- .+++.+|||+++....        ...++.|.+|+.+|
T Consensus         4 ~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l   63 (277)
T d1phka_           4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL   63 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHH
Confidence            455567899999999999985 5688999999854321        11125688898776

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.3e-06  Score=61.48  Aligned_cols=34  Identities=32%  Similarity=0.686  Sum_probs=27.9

Q ss_pred             CCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          102 YDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       102 ~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      |...++||+|+||+||++.. .+++.||||+++..
T Consensus        22 Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~   56 (350)
T d1q5ka_          22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD   56 (350)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred             cEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECcc
Confidence            44456799999999999997 45889999999553

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=3.5e-06  Score=54.06  Aligned_cols=30  Identities=23%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             cCeecccCCceeeeEEcCCCCEEEEEecCC
Q 042973          105 SHFLGEGGFGSVYKGVLPDNTQIAVKKPKE  134 (152)
Q Consensus       105 ~~~ig~g~~g~Vy~g~~~~~~~vavK~l~~  134 (152)
                      .+.||+|+||.||+|...+|..||||.++.
T Consensus         5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~   34 (191)
T d1zara2           5 GKLMGEGKESAVFNCYSEKFGECVVKFHKV   34 (191)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC
T ss_pred             CCEeeeCcceEEEEEECCCCCEEEEEEEec
Confidence            578999999999999988899999998753

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.85  E-value=5.3e-06  Score=56.81  Aligned_cols=35  Identities=31%  Similarity=0.619  Sum_probs=28.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCc
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKES  135 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~  135 (152)
                      +|...+.||+|+||+||+|+. .++..||||.++..
T Consensus         6 ~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~   41 (293)
T d1csna_           6 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR   41 (293)
T ss_dssp             TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccc
Confidence            444567899999999999985 45889999988543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.1e-06  Score=59.28  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=38.0

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||.||++.- .++..||||.++....  ....+.+.+|+.+|
T Consensus         6 dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il   59 (337)
T d1o6la_           6 DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL   59 (337)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHH
Confidence            455567899999999999985 5689999999964321  11126788898876

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.4e-06  Score=58.64  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=35.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCCcch--hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKESDK--IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~~~~--~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.- .+++.||||+++....  ....+.+..|..+|
T Consensus         3 dy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l   56 (320)
T d1xjda_           3 DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL   56 (320)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred             CeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHH
Confidence            455567899999999999987 4588999999964321  11114566665543

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.1e-06  Score=38.52  Aligned_cols=31  Identities=42%  Similarity=1.006  Sum_probs=26.2

Q ss_pred             ccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           11 DECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        11 ~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+|.   ..||  +++|.+..+.|.|.|+.||.|..
T Consensus         1 D~C~---~~PC~ngg~C~~~~~~y~C~C~~G~~G~~   33 (39)
T d1xkba1           1 DQCE---TSPCQNQGKCKDGLGEYTCTCLEGFEGKN   33 (39)
T ss_dssp             CTTT---TCCCCSSCEECCCSSSCCEECCTTEETTT
T ss_pred             CcCC---CCCCCCCcEEECCCCCEEEECCCCCCcCc
Confidence            4675   3578  78999999999999999999876

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.3e-05  Score=36.91  Aligned_cols=31  Identities=39%  Similarity=1.015  Sum_probs=25.6

Q ss_pred             ccccCCCCCCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           11 DECLDKEKYHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        11 ~~C~~~~~~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      |+|.   ..||  +++|.+..++|.|.|+.||.|..
T Consensus         1 d~C~---~~PC~ngg~C~~~~~~y~C~C~~g~~G~~   33 (35)
T d2vj3a3           1 DECA---SSPCLHNGRCLDKINEFQCECPTGFTGHL   33 (35)
T ss_dssp             CTTT---TCCSTTTCEEEECSSCEEEECCTTEESSS
T ss_pred             CCCC---CCCCCCCcEEECCCCCeEEECCCCCCCCC
Confidence            4564   3578  78999999999999999999864

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.7e-06  Score=57.74  Aligned_cols=52  Identities=19%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             hCCCccCeecccCCceeeeEEc-CC-CCEEEEEecCCcchh-HHHHHHHHHHhhh
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PD-NTQIAVKKPKESDKI-RINQEFQKEMGIV  151 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~-~~~vavK~l~~~~~~-~~~~~f~~E~~~l  151 (152)
                      +.|...+.||+|+||+||++.. .. ++.||||+++..... .....+.+|+.+|
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l   61 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL   61 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHH
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHH
Confidence            4565567899999999999985 33 567999998543221 1113455665543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=1.4e-05  Score=56.35  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=29.0

Q ss_pred             hCCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          100 KNYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       100 ~~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ++|...+.||+|+||.||++.. .+|..||||.++.
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~   39 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK   39 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEch
Confidence            3466678899999999999986 4589999999853

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.8e-06  Score=59.05  Aligned_cols=51  Identities=20%  Similarity=0.322  Sum_probs=34.7

Q ss_pred             CCCccCeecccCCceeeeEEc----CCCCEEEEEecCCcch---hHHHHHHHHHHhhh
Q 042973          101 NYDESHFLGEGGFGSVYKGVL----PDNTQIAVKKPKESDK---IRINQEFQKEMGIV  151 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~----~~~~~vavK~l~~~~~---~~~~~~f~~E~~~l  151 (152)
                      +|...+.||+|+||+||++.-    ..|+.||||.++....   ....+.|.+|+.+|
T Consensus        25 ~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il   82 (322)
T d1vzoa_          25 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVL   82 (322)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHH
T ss_pred             ceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHH
Confidence            355567899999999999964    2478999999854321   11114566777665

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.2e-05  Score=38.66  Aligned_cols=32  Identities=38%  Similarity=0.811  Sum_probs=26.7

Q ss_pred             cccccCCCCCCC-CccceeCCCCceeeCCCCCcCCC
Q 042973           10 IDECLDKEKYHC-EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        10 ~~~C~~~~~~~c-~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .+.|.   ..|| +|+|.+..++|.|.|+.||.|..
T Consensus         8 ~~~C~---~~PC~nG~C~~~~~~y~C~C~~G~~G~~   40 (48)
T d1autl1           8 EHPCA---SLCCGHGTCIDGIGSFSCDCRSGWEGRF   40 (48)
T ss_dssp             CCSSS---STTTTSEEECCCSSCCCEEECTTEESTT
T ss_pred             CCccc---CCCCCCCEEECCCCCCeEeCCCCCcCCC
Confidence            44564   3578 89999999999999999999876

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=1.2e-05  Score=38.03  Aligned_cols=27  Identities=22%  Similarity=0.692  Sum_probs=23.2

Q ss_pred             CccceeCCCCceeeCCCCCcCCCCCccC
Q 042973           22 EGKCKNTIGSCTCDCPIGMYGDGKVDCR   49 (152)
Q Consensus        22 ~~~C~~~~g~~~C~C~~g~~~~~~~~c~   49 (152)
                      ++.|.|.+|+|.|.|.+||.+++ ..|.
T Consensus        12 ~A~C~Nt~Gsy~C~C~~Gy~GdG-~~C~   38 (40)
T d1gl4a2          12 HAECRDYATGFCCRCVANYTGNG-RQCV   38 (40)
T ss_dssp             TEEEEECSSCEEEEECTTEEECS-SSEE
T ss_pred             CCEeecCCCCeEeECCCCCcCCC-CEee
Confidence            67899999999999999999976 3453

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=5.2e-05  Score=52.80  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             CeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          106 HFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       106 ~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      ++||+|+||.||++.- .++..||||.++.
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~   47 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   47 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECC
Confidence            4699999999999985 5689999999864

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.5e-05  Score=52.82  Aligned_cols=34  Identities=44%  Similarity=0.860  Sum_probs=28.1

Q ss_pred             CCCccCeecccCCceeeeEEc-CCCCEEEEEecCC
Q 042973          101 NYDESHFLGEGGFGSVYKGVL-PDNTQIAVKKPKE  134 (152)
Q Consensus       101 ~~~~~~~ig~g~~g~Vy~g~~-~~~~~vavK~l~~  134 (152)
                      .|...+.||+|+||.||++.. .+++.||||.++.
T Consensus         5 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~   39 (273)
T d1xwsa_           5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEK   39 (273)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG
T ss_pred             eEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEeh
Confidence            355567899999999999986 5689999999853

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.3e-05  Score=35.82  Aligned_cols=26  Identities=46%  Similarity=1.099  Sum_probs=23.6

Q ss_pred             CCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|.+..+.|.|.|+.||.|..
T Consensus         7 ~pC~ngg~C~~~~~~y~C~C~~g~~G~~   34 (40)
T d1g1sa2           7 MSCSKQGECLETIGNYTCSCYPGFYGPE   34 (40)
T ss_dssp             TGGGGSEEEEECSSSEEEEECTTEESTT
T ss_pred             CcCCCCcEEECCCCCeEEeCCCCccCCC
Confidence            478  88999999999999999999876

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=4e-05  Score=36.04  Aligned_cols=26  Identities=38%  Similarity=0.847  Sum_probs=23.5

Q ss_pred             CCC--CccceeCCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|.+..++|.|.|+.||.|..
T Consensus         7 ~pC~ngg~C~~~~~~~~C~C~~g~~G~~   34 (39)
T d1g1ta2           7 TSCSGHGECVETINNYTCKCDPGFSGLK   34 (39)
T ss_dssp             TGGGGSEEEEEETTEEEEEECTTEESTT
T ss_pred             CcCCCCcEEECCCCCEEEeCCCCCcCcC
Confidence            578  88999999999999999999876

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00042  Score=34.24  Aligned_cols=31  Identities=23%  Similarity=0.571  Sum_probs=26.2

Q ss_pred             CCCccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973           20 HCEGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        20 ~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      .|...|.+.+++|.|.|+.||.... +..|.+
T Consensus         8 gC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2           8 GCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             GCSSEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred             CcccEeecCCCCeEEECCCCCEECCCCCcccc
Confidence            5788999999999999999998765 666753

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=96.59  E-value=0.00062  Score=32.30  Aligned_cols=32  Identities=31%  Similarity=0.861  Sum_probs=24.5

Q ss_pred             cccccCCCCCCC--CccceeC-CCCceeeCCC-CCcCCC
Q 042973           10 IDECLDKEKYHC--EGKCKNT-IGSCTCDCPI-GMYGDG   44 (152)
Q Consensus        10 ~~~C~~~~~~~c--~~~C~~~-~g~~~C~C~~-g~~~~~   44 (152)
                      ++.|..   .||  +++|.+. .++|.|.|+. ||.|..
T Consensus         2 id~C~~---nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~   37 (42)
T d1q4ga2           2 VNPCCY---YPCQHQGICVRFGLDRYQCDCTRTGYSGPN   37 (42)
T ss_dssp             CCGGGG---CCCCTTCEEEEETTTEEEEECTTSSEETTT
T ss_pred             CccCcC---CCCCCCCEeeeCCCCCEEEECCCCCcCCcC
Confidence            466753   578  7899875 5789999975 898876

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0017  Score=30.56  Aligned_cols=26  Identities=31%  Similarity=0.930  Sum_probs=21.6

Q ss_pred             CCC--CccceeC--CCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      .||  +++|...  .+.|.|.|+.||.|..
T Consensus         4 nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~   33 (41)
T d1tpga1           4 PRCFNGGTCQQALYFSDFVCQCPEGFAGKS   33 (41)
T ss_dssp             CCSCTTCEEEEESSSSCEEEECCTTCBSSS
T ss_pred             CCCCCCCEEecCCCCCCeEECCCCCCCCCC
Confidence            478  7899975  4679999999999876

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.27  E-value=0.00067  Score=33.63  Aligned_cols=32  Identities=19%  Similarity=0.511  Sum_probs=26.1

Q ss_pred             CCCCccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973           19 YHCEGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        19 ~~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      ..|...|.+.+++|.|.|+.||.... +..|.+
T Consensus         6 GgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~   38 (51)
T d1kigl_           6 GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             TSSSSCCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CCcccEeEcCCCcEEeEcCCCCEECCCCCcccc
Confidence            35888899999999999999997655 666753

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0018  Score=31.24  Aligned_cols=35  Identities=26%  Similarity=0.649  Sum_probs=26.6

Q ss_pred             cccccCCCCCCC-Ccccee--CCCCceeeCCCCCcCCC
Q 042973           10 IDECLDKEKYHC-EGKCKN--TIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        10 ~~~C~~~~~~~c-~~~C~~--~~g~~~C~C~~g~~~~~   44 (152)
                      +.+|+.....+| +|.|..  ....+.|.|+.||.|+.
T Consensus         3 i~~C~~~~~~yC~nG~C~~~~~~~~~~C~C~~gY~G~R   40 (46)
T d1k36a_           3 ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVR   40 (46)
T ss_dssp             EECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTT
T ss_pred             eeeCCCcCCCcCcCCEEEEeCCCCccEeECCCCceecC
Confidence            557765545678 899975  34678999999999976

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.00061  Score=33.77  Aligned_cols=31  Identities=23%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             CCCccceeCCCCceeeCCCCCcCCC-CCccCC
Q 042973           20 HCEGKCKNTIGSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        20 ~c~~~C~~~~g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      .|...|.+.+++|.|.|+.||.... +.+|.+
T Consensus         9 gC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1           9 DCDQFCHEEQNSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             GCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcccEeecCCCCeEeEcCCCCEECCCCCcccc
Confidence            5888999999999999999998765 666754

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0041  Score=30.90  Aligned_cols=33  Identities=36%  Similarity=0.770  Sum_probs=23.9

Q ss_pred             cccCCCCCCC--CccceeC--CCCceeeCCCCCcCCC
Q 042973           12 ECLDKEKYHC--EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        12 ~C~~~~~~~c--~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      +|......+|  +|+|...  ...+.|.|+.||.|..
T Consensus         5 ~C~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~   41 (53)
T d3egfa_           5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDR   41 (53)
T ss_dssp             CCCTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSS
T ss_pred             CCCCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCC
Confidence            4443234578  6899854  4689999999999876

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=32.43  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=25.8

Q ss_pred             ccccCCCCCCCCccce------eCCCCceeeCCCCCcCCC-CCcc
Q 042973           11 DECLDKEKYHCEGKCK------NTIGSCTCDCPIGMYGDG-KVDC   48 (152)
Q Consensus        11 ~~C~~~~~~~c~~~C~------~~~g~~~C~C~~g~~~~~-~~~c   48 (152)
                      ++|.... ..|...|.      +..++|.|.|+.||.... +..|
T Consensus         5 neC~~~N-GGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tC   48 (50)
T d1ijqa2           5 ERTTLSN-GGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC   48 (50)
T ss_dssp             SSSSSGG-GGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCE
T ss_pred             cccCCCC-CCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCcc
Confidence            4554322 35888895      445789999999998765 5555

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.002  Score=30.25  Aligned_cols=31  Identities=35%  Similarity=1.034  Sum_probs=23.5

Q ss_pred             ccccCCCCCCC--CccceeC-CCCceeeCC-CCCcCCC
Q 042973           11 DECLDKEKYHC--EGKCKNT-IGSCTCDCP-IGMYGDG   44 (152)
Q Consensus        11 ~~C~~~~~~~c--~~~C~~~-~g~~~C~C~-~g~~~~~   44 (152)
                      |.|.   ..||  +++|.+. .++|.|.|+ .||.|..
T Consensus         2 d~C~---~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~   36 (41)
T d1cvua2           2 NPCC---SNPCQNRGECMSTGFDQYKCDCTRTGFYGEN   36 (41)
T ss_dssp             CTTT---TCCCCTTCEEEEEETTEEEEECTTSSEETTT
T ss_pred             CcCc---CCCCCCCCEEEECCCCCEEEeCcCCCcCCcC
Confidence            4564   2478  7899875 578999997 5998876

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0028  Score=30.85  Aligned_cols=33  Identities=27%  Similarity=0.751  Sum_probs=23.8

Q ss_pred             cccCCCCCCC--CccceeC--CCCceeeCCCCCcCCC
Q 042973           12 ECLDKEKYHC--EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        12 ~C~~~~~~~c--~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      +|......+|  +|+|.+.  ...+.|.|+.||.|..
T Consensus         3 ~C~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~   39 (48)
T d1nqlb_           3 ECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGER   39 (48)
T ss_dssp             ECCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTT
T ss_pred             cCCCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCC
Confidence            4443334568  5899863  4679999999999876

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0013  Score=34.06  Aligned_cols=26  Identities=27%  Similarity=0.695  Sum_probs=21.1

Q ss_pred             CCC--Cccce-----eCCCCceeeCCCCCcCCC
Q 042973           19 YHC--EGKCK-----NTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        19 ~~c--~~~C~-----~~~g~~~C~C~~g~~~~~   44 (152)
                      .||  +|+|.     +..+.|.|.|+.||.|..
T Consensus        12 ~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~   44 (63)
T d1haea_          12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGAR   44 (63)
T ss_dssp             TTSCTTCEEEEEESSSSSCCEEEECCTTEESTT
T ss_pred             CcCCCCCEEeecccccCCCCEEeECCCCCCCCC
Confidence            578  68995     345789999999999976

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.011  Score=29.77  Aligned_cols=31  Identities=29%  Similarity=0.664  Sum_probs=24.6

Q ss_pred             CCCccceeCC-CCceeeCCCCCcCCC-CCccCC
Q 042973           20 HCEGKCKNTI-GSCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        20 ~c~~~C~~~~-g~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      .|...|.+.+ +++.|.|+.||...+ +..|.+
T Consensus         9 gC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   41 (57)
T d1rfnb_           9 RCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   41 (57)
T ss_dssp             GCSSEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred             CcccEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence            5788999886 589999999998765 666764

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.014  Score=28.86  Aligned_cols=31  Identities=29%  Similarity=0.619  Sum_probs=24.0

Q ss_pred             CCCccceeCCC-CceeeCCCCCcCCC-CCccCC
Q 042973           20 HCEGKCKNTIG-SCTCDCPIGMYGDG-KVDCRG   50 (152)
Q Consensus        20 ~c~~~C~~~~g-~~~C~C~~g~~~~~-~~~c~~   50 (152)
                      .|...|.+.++ .+.|.|+.||.... +.+|.+
T Consensus         8 GC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1           8 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             GCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCcCEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence            47788988865 58899999997765 666753

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.066  Score=25.82  Aligned_cols=36  Identities=28%  Similarity=0.726  Sum_probs=23.0

Q ss_pred             cccCCCCCCC-Ccccee--CCCCceeeCCCCCcCCCCCccCC
Q 042973           12 ECLDKEKYHC-EGKCKN--TIGSCTCDCPIGMYGDGKVDCRG   50 (152)
Q Consensus        12 ~C~~~~~~~c-~~~C~~--~~g~~~C~C~~g~~~~~~~~c~~   50 (152)
                      .|...-...| +|.|..  ....+.|.|+.||.|..   |+.
T Consensus         6 pC~~~~~~yClnGgcc~~~~~~~~~C~C~~gy~G~R---Ce~   44 (49)
T d1moxc_           6 DCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGAR---CEH   44 (49)
T ss_dssp             CCCCCSSCSSTTEEEEEETTTTEEEEEECTTEESTT---SCE
T ss_pred             ccCcccCCEeeCCeEEecCCCCCcEeECCCCCEecC---Ccc
Confidence            4543323457 565543  34667899999999876   653

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.057  Score=26.17  Aligned_cols=29  Identities=28%  Similarity=0.747  Sum_probs=19.8

Q ss_pred             CCC-Cccce--eCCCCceeeCCCCCcCCCCCccCC
Q 042973           19 YHC-EGKCK--NTIGSCTCDCPIGMYGDGKVDCRG   50 (152)
Q Consensus        19 ~~c-~~~C~--~~~g~~~C~C~~g~~~~~~~~c~~   50 (152)
                      ..| +|.|.  .....+.|.|+.||.|..   |+.
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~r---Ce~   45 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGAR---CER   45 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTT---TCE
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCC---Ccc
Confidence            356 44443  334668999999999876   653

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.12  Score=23.88  Aligned_cols=24  Identities=33%  Similarity=0.865  Sum_probs=19.0

Q ss_pred             C-CccceeC--CCCceeeCCCCCcCCC
Q 042973           21 C-EGKCKNT--IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        21 c-~~~C~~~--~g~~~C~C~~g~~~~~   44 (152)
                      | +|+|...  .....|.|..||.|..
T Consensus        10 CihG~C~~i~~l~~~~C~C~~gY~G~R   36 (41)
T d1xdtr_          10 CIHGECKYVKELRAPSCICHPGYHGER   36 (41)
T ss_dssp             CSSEEECCBGGGTBCCEEECTTEESTT
T ss_pred             eECcEEeecCcCCCceeECCCCCeecC
Confidence            6 8888754  3567899999999875

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.29  Score=22.23  Aligned_cols=24  Identities=29%  Similarity=0.560  Sum_probs=18.0

Q ss_pred             CCCccceeC-CCCceeeCCCCCcCC
Q 042973           20 HCEGKCKNT-IGSCTCDCPIGMYGD   43 (152)
Q Consensus        20 ~c~~~C~~~-~g~~~C~C~~g~~~~   43 (152)
                      .|..+|... .+.|.|.|..||...
T Consensus        11 ~CE~qCqP~~~~~Y~CiCaeGFaP~   35 (43)
T d1dx5i1          11 NCEYQCQPLDQTSYLCVCAEGFAPI   35 (43)
T ss_dssp             CCSSEEEECSSSCEEEECCTTEEEE
T ss_pred             CcceeeeeCCCCcceEEeccccccC
Confidence            356677765 468999999998653

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.84  E-value=0.55  Score=20.78  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=17.4

Q ss_pred             CccceeC---CCCceeeCCCCCcCCC
Q 042973           22 EGKCKNT---IGSCTCDCPIGMYGDG   44 (152)
Q Consensus        22 ~~~C~~~---~g~~~C~C~~g~~~~~   44 (152)
                      +|+|...   .+-..|.||++|.+..
T Consensus         7 GG~Cvsyk~FS~I~rC~CPk~f~G~H   32 (40)
T d2i9aa1           7 GGTCVSNKYFSNIHWCNCPKKFGGQH   32 (40)
T ss_dssp             TCEEEECSSSTTCEEEECCTTEESTT
T ss_pred             CCEEEEEehhcCCEEecCCcccCcee
Confidence            6788753   3556899999999876

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.24  E-value=0.61  Score=21.32  Aligned_cols=19  Identities=32%  Similarity=0.744  Sum_probs=15.0

Q ss_pred             CccceeCCCCceeeCCCCCcCCC
Q 042973           22 EGKCKNTIGSCTCDCPIGMYGDG   44 (152)
Q Consensus        22 ~~~C~~~~g~~~C~C~~g~~~~~   44 (152)
                      +++|...    .|.|.+||.+..
T Consensus        20 hG~C~~G----~C~C~~Gw~G~~   38 (41)
T d1l3ya_          20 RGLCFCG----KCRCHPGFEGSA   38 (41)
T ss_dssp             HEEEETT----EEEECTTCCTTT
T ss_pred             CCeEECC----EEEcCCCCcccC
Confidence            5777653    799999999876