Citrus Sinensis ID: 043029

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
ETSSGNDNNVTASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSKSSNTECWLTESPNAD
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHccccccccccccccccHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHcccccccccEEEEEEEcccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEccccccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
etssgndnnvtassdvACFNMQLRRLQKSFrgvrkrpwgkFAAEIRDgkkktgarvwlgtydtpedaALAYDRAAFKIHGqkaklnfphligskssntecwltespnad
Flexible Loop (DISEMBL)
etssgndnnvtassdvacfnmQLRRLqksfrgvrkrpwgkfaaeirdgkkktgarvwLGTYDTPEDAALAYDRAAFKIHGQKAKLNfphligskssntecwltespnad
Low Complexity Region (SEG)
ETSSGNDNNVTASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSKSSNTECWLTESPNAD
Disordered region (IsUnstruct)
***************VACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIG*******CW********
Disordered Region (DISOPRED)
********************************VRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPH********************
Disordered Region (DISEMBL)
**********TASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSKSSNTECWLTESPNAD
Disordered Region (DISPRO)
*************************LQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGS****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ETSSGNDNNVTASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSKSSNTECWLTESPNAD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.577	0.278	0.828	3e-26
Q40479	233	Ethylene-responsive trans	N/A	no	0.587	0.274	0.707	8e-22
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.587	0.270	0.707	1e-21
Q40476	236	Ethylene-responsive trans	N/A	no	0.587	0.271	0.692	2e-21
O04681	161	Pathogenesis-related gene	N/A	no	0.724	0.490	0.602	9e-21
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.587	0.262	0.692	2e-20
O80337	268	Ethylene-responsive trans	no	no	0.596	0.242	0.696	2e-20
P93007	218	Ethylene-responsive trans	no	no	0.577	0.288	0.692	4e-20
Q9LYU3	212	Ethylene-responsive trans	no	no	0.669	0.344	0.623	8e-20
O80338	243	Ethylene-responsive trans	no	no	0.596	0.267	0.681	1e-19

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 30  FRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPH 89
           +RGVR+RPWGKFAAEIRD  KK GARVWLGTY+TPEDAA+AYDRAAF++ G KAKLNFPH
Sbjct: 92  YRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150

Query: 90  LIGS 93
           LIGS
Sbjct: 151 LIGS 154

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           + +RGVR+RPWGKFAAEIRD   K GARVWLGTY+T E+AALAYD+AA+++ G KA LNF
Sbjct: 97  RHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155

Query: 88  PHLIG 92
           PH IG
Sbjct: 156 PHRIG 160

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           + +RGVR+RPWGKFAAEIRD   K GARVWLGTY+T E+AALAYD+AA+++ G KA LNF
Sbjct: 101 RHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159

Query: 88  PHLIG 92
           PH IG
Sbjct: 160 PHRIG 164

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           + +RGVR+RPWGKFAAEIRD   K GARVWLGTY+T E+AA+AYD+AA+++ G KA LNF
Sbjct: 103 RHYRGVRRRPWGKFAAEIRD-PAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNF 161

Query: 88  PHLIG 92
           PH IG
Sbjct: 162 PHRIG 166

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 62/83 (74%), Gaps = 4/83 (4%)

Query: 20  NMQLRRLQ---KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAF 76
           N  LR LQ   K +RGVR+RPWGK+AAEIRD  +  GARVWLGT++T E+AALAYDRAAF
Sbjct: 46  NNILRPLQCIGKKYRGVRRRPWGKYAAEIRDSARH-GARVWLGTFETAEEAALAYDRAAF 104

Query: 77  KIHGQKAKLNFPHLIGSKSSNTE 99
           ++ G KA LNFP  I + S + +
Sbjct: 105 RMRGAKALLNFPSEIVNASVSVD 127

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 1/65 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           + +RGVR+RPWGKFAAEIRD   K GARVWLGTY++ E+AALAY +AAF++ G KA LNF
Sbjct: 105 RHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163

Query: 88  PHLIG 92
           PH IG
Sbjct: 164 PHRIG 168

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 1/66 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct: 146 KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

Query: 88  PHLIGS 93
           P  + S
Sbjct: 205 PLRVNS 210

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%), Gaps = 2/65 (3%)

Query: 27  QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLN 86
           Q+++RGVR+RPWGK+AAEIRD  K   ARVWLGT+DT E+AALAYD+AAF+  G KAKLN
Sbjct: 67  QRNYRGVRQRPWGKWAAEIRDPNK--AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLN 124

Query: 87  FPHLI 91
           FP  I
Sbjct: 125 FPEHI 129

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 4/77 (5%)

Query: 22  QLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQ 81
           Q RR  + +RGVR+RPWGK+AAEIRD KK   ARVWLGT++T E+AALAYDRAA K  G 
Sbjct: 33  QPRR--RHYRGVRQRPWGKWAAEIRDPKK--AARVWLGTFETAEEAALAYDRAALKFKGT 88

Query: 82  KAKLNFPHLIGSKSSNT 98
           KAKLNFP  +   ++ T
Sbjct: 89  KAKLNFPERVQGPTTTT 105

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYD AAF++ G +A LNF
Sbjct: 115 KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173

Query: 88  PHLIGS 93
           P  + S
Sbjct: 174 PLRVNS 179

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255541052	204	DNA binding protein, putative [Ricinus c	0.678	0.362	0.756	5e-26
224137164	193	AP2/ERF domain-containing transcription	0.715	0.404	0.728	3e-25
15225361	226	ethylene-responsive transcription factor	0.577	0.278	0.828	1e-24
21594007	226	putative ethylene response element bindi	0.577	0.278	0.828	1e-24
297824519	240	hypothetical protein ARALYDRAFT_903921 [	0.577	0.262	0.828	2e-24
356523026	240	PREDICTED: ethylene-responsive transcrip	0.752	0.341	0.674	2e-24
356531816	203	PREDICTED: ethylene-responsive transcrip	0.706	0.379	0.717	3e-24
351723731	202	ethylene-responsive element binding prot	0.633	0.341	0.785	4e-24
255541056	223	Ethylene-responsive transcription factor	0.733	0.358	0.707	5e-24
255630234	187	unknown [Glycine max]	0.633	0.368	0.785	5e-24

>gi|255541052|ref|XP_002511590.1| DNA binding protein, putative [Ricinus communis] gi|223548770|gb|EEF50259.1| DNA binding protein, putative [Ricinus communis]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 62/74 (83%)

Query: 29  SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFP 88
           S+RGVRKRPWGK+AA+IR+ KKK   R+WLGTYDTPEDAALAYDRAAFKI G KAKLNFP
Sbjct: 107 SYRGVRKRPWGKYAAQIREPKKKGATRLWLGTYDTPEDAALAYDRAAFKIRGSKAKLNFP 166

Query: 89  HLIGSKSSNTECWL 102
           HL GS +S  E  L
Sbjct: 167 HLAGSHASEMESSL 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137164|ref|XP_002327050.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835365|gb|EEE73800.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 3/81 (3%)

Query: 15  DVAC-FNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDR 73
           DVAC  N+ L +  + +RGVR+RPWGK+AAEIRD  KK GAR+WLGTY+TPEDAALAYD+
Sbjct: 85  DVACKSNLALPKGSQ-YRGVRRRPWGKYAAEIRD-PKKNGARMWLGTYETPEDAALAYDQ 142

Query: 74  AAFKIHGQKAKLNFPHLIGSK 94
           AAFKI G KAKLNFPHLIGS+
Sbjct: 143 AAFKIRGSKAKLNFPHLIGSE 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 30  FRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPH 89
           +RGVR+RPWGKFAAEIRD  KK GARVWLGTY+TPEDAA+AYDRAAF++ G KAKLNFPH
Sbjct: 92  YRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150

Query: 90  LIGS 93
           LIGS
Sbjct: 151 LIGS 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 30  FRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPH 89
           +RGVR+RPWGKFAAEIRD  KK GARVWLGTY+TPEDAA+AYDRAAF++ G KAKLNFPH
Sbjct: 92  YRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150

Query: 90  LIGS 93
           LIGS
Sbjct: 151 LIGS 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824519|ref|XP_002880142.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata] gi|297325981|gb|EFH56401.1| hypothetical protein ARALYDRAFT_903921 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 30  FRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPH 89
           +RGVR+RPWGKFAAEIRD  KK GARVWLGTY+TPEDAA+AYDRAAF++ G KAKLNFPH
Sbjct: 106 YRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 164

Query: 90  LIGS 93
           LIGS
Sbjct: 165 LIGS 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523026|ref|XP_003530143.1| PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 17  ACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAF 76
           AC      R   SFRGVR+RPWGK+AAEIRD K+  G RVWLGTY+T E+AALAYDRAAF
Sbjct: 108 ACGTHVPPRRGLSFRGVRRRPWGKYAAEIRDAKR-NGVRVWLGTYETAENAALAYDRAAF 166

Query: 77  KIHGQKAKLNFPHLIGSKSSNTE 99
           K+HG KAKLNFPHLI S   + E
Sbjct: 167 KMHGSKAKLNFPHLIASAHHHVE 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531816|ref|XP_003534472.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           K +RGVR+RPWGKFAAEIRD  KK GARVWLGTYDT E AALAYD+AAFK+ G+KAKLNF
Sbjct: 76  KHYRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYDTEEKAALAYDKAAFKMRGRKAKLNF 134

Query: 88  PHLIGSKSSNTECWLTES 105
           PHLI S   + E  +T S
Sbjct: 135 PHLIDSDMLSEEVMVTTS 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723731|ref|NP_001237801.1| ethylene-responsive element binding protein 1 [Glycine max] gi|21304712|gb|AAM45475.1| ethylene-responsive element binding protein 1 [Glycine max]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           K +RGVR+RPWGKFAAEIRD  KK GARVWLGTYDT E AALAYD+AAFK+ GQKAKLNF
Sbjct: 75  KHYRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNF 133

Query: 88  PHLIGSKSSN 97
           PHLI S +S+
Sbjct: 134 PHLIDSDNSD 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541056|ref|XP_002511592.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548772|gb|EEF50261.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 66/82 (80%), Gaps = 2/82 (2%)

Query: 12  ASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAY 71
            S +VA  N  L   ++++ GVRKRPWG +AAEIRD  KK GARVWLGTY+TPEDAALAY
Sbjct: 83  VSPEVARPN-HLPTRKRNYMGVRKRPWGTYAAEIRD-PKKNGARVWLGTYETPEDAALAY 140

Query: 72  DRAAFKIHGQKAKLNFPHLIGS 93
           DRAAFK+ G KAKLNFPHLIGS
Sbjct: 141 DRAAFKMRGTKAKLNFPHLIGS 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630234|gb|ACU15472.1| unknown [Glycine max]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 61/70 (87%), Gaps = 1/70 (1%)

Query: 28  KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
           K +RGVR+RPWGKFAAEIRD  KK GARVWLGTYDT E AALAYD+AAFK+ GQKAKLNF
Sbjct: 75  KHYRGVRRRPWGKFAAEIRD-PKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNF 133

Query: 88  PHLIGSKSSN 97
           PHLI S +S+
Sbjct: 134 PHLIDSDNSD 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.816	0.393	0.630	1.4e-25
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.559	0.25	0.725	7.6e-22
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.596	0.242	0.696	2.1e-20
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.605	0.217	0.671	3.5e-20
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.651	0.533	0.635	4.4e-20
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.568	0.446	0.698	9.2e-20
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.642	0.330	0.625	1.2e-19
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.596	0.267	0.681	1.5e-19
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.798	0.432	0.510	2.5e-19
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.660	0.290	0.631	2.5e-19

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/92 (63%), Positives = 69/92 (75%)

Query:     2 TSSGNDNNVTASSDVACFNMQLRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTY 61
             TS   +N   A+        + + +Q  +RGVR+RPWGKFAAEIRD  KK GARVWLGTY
Sbjct:    66 TSPAEENKPPATKASGSHAPRQKGMQ--YRGVRRRPWGKFAAEIRD-PKKNGARVWLGTY 122

Query:    62 DTPEDAALAYDRAAFKIHGQKAKLNFPHLIGS 93
             +TPEDAA+AYDRAAF++ G KAKLNFPHLIGS
Sbjct:   123 ETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 45/62 (72%), Positives = 51/62 (82%)

Query:    27 QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLN 86
             +KS+RGVRKRPWGKFAAEIRD  +K G RVWLGT+DT E AALAYD+AAF + G  A LN
Sbjct:    79 EKSYRGVRKRPWGKFAAEIRDSTRK-GIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLN 137

Query:    87 FP 88
             FP
Sbjct:   138 FP 139

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 46/66 (69%), Positives = 54/66 (81%)

Query:    28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
             K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct:   146 KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204

Query:    88 PHLIGS 93
             P  + S
Sbjct:   205 PLRVNS 210

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 45/67 (67%), Positives = 56/67 (83%)

Query:    28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
             K +RGVR+RPWGKFAAEIRD   K GARVWLGT+D+ E+AA+AYDRAA+++ G +A LNF
Sbjct:   147 KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNF 205

Query:    88 PHLIGSK 94
             P  IGS+
Sbjct:   206 PLRIGSE 212

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 47/74 (63%), Positives = 58/74 (78%)

Query:    27 QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLN 86
             Q  +RGVR+RPWGK+AAEIRD +K  G RVWLGT+DT EDAA AYDRAA+ + G+ A LN
Sbjct:    17 QGKYRGVRRRPWGKYAAEIRDSRKH-GERVWLGTFDTAEDAARAYDRAAYSMRGKAAILN 75

Query:    87 FPHL--IGSKSSNT 98
             FPH   +G+ SS+T
Sbjct:    76 FPHEYNMGTGSSST 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query:    27 QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLN 86
             +  +RGVRKRPWGK+AAEIRD  +  GARVWLGT++T EDAA AYDRAAF + GQ+A LN
Sbjct:    11 EMKYRGVRKRPWGKYAAEIRDSARH-GARVWLGTFNTAEDAARAYDRAAFGMRGQRAILN 69

Query:    87 FPH 89
             FPH
Sbjct:    70 FPH 72

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query:    27 QKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLN 86
             ++ +RGVR+RPWGK+AAEIRD KK   ARVWLGT++T E+AALAYDRAA K  G KAKLN
Sbjct:    36 RRHYRGVRQRPWGKWAAEIRDPKK--AARVWLGTFETAEEAALAYDRAALKFKGTKAKLN 93

Query:    87 FPHLIGSKSSNT 98
             FP  +   ++ T
Sbjct:    94 FPERVQGPTTTT 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/66 (68%), Positives = 53/66 (80%)

Query:    28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
             K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYD AAF++ G +A LNF
Sbjct:   115 KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173

Query:    88 PHLIGS 93
             P  + S
Sbjct:   174 PLRVNS 179

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 47/92 (51%), Positives = 66/92 (71%)

Query:     1 ETSSGNDNNVTASSDVACFN--MQLRRLQKS--FRGVRKRPWGKFAAEIRDGKKKTGARV 56
             E  S + ++ T S +V   +   + +R +++  +RGVR+RPWGKFAAEIRD  KK G+R+
Sbjct:    74 EAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKK-GSRI 132

Query:    57 WLGTYDTPEDAALAYDRAAFKIHGQKAKLNFP 88
             WLGT+++  DAA AYD AAFK+ G+KA LNFP
Sbjct:   133 WLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 48/76 (63%), Positives = 57/76 (75%)

Query:    23 LRRLQKSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQK 82
             LRR  + +RGVR+RPWGK+AAEIRD KK   ARVWLGT++T E AALAYD AA K  G K
Sbjct:    85 LRR--RHYRGVRQRPWGKWAAEIRDPKK--AARVWLGTFETAESAALAYDEAALKFKGSK 140

Query:    83 AKLNFPHLIGSKSSNT 98
             AKLNFP  +   S++T
Sbjct:   141 AKLNFPERVQLGSNST 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9K1	ERF99_ARATH	No assigned EC number	0.8281	0.5779	0.2787	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF7 AP2/ERF domain-containing transcription factor (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-28
pfam00847	53	pfam00847, AP2, AP2 domain	8e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  103 bits (260), Expect = 5e-31
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 29 SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFP 88
           +RGVR+RPWGK+ AEIRD  K    RVWLGT+DT E+AA AYDRAAFK  G+ A+LNFP
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGK--RVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Query: 89 HL 90
          + 
Sbjct: 59 NS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 98.1 bits (245), Expect = 1e-28
 Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query: 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
            +RGVR+RPWGK+ AEIRD     G R+WLGT+DT E+AA AYDRAA K+ G  A LNF
Sbjct: 1  SKYRGVRQRPWGKWVAEIRD--PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

Query: 88 PHL 90
          P  
Sbjct: 59 PDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 57.7 bits (140), Expect = 8e-13
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 30 FRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHG 80
          ++GVR    WG++ AEIRD  +K   R  LGT+ T E+AA A   A  K+ G
Sbjct: 3  YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.89
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.89
PHA00280	121	putative NHN endonuclease	99.68
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.34
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	84.25

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.89  E-value=6.8e-23  Score=126.86  Aligned_cols=61  Identities=62%  Similarity=1.129  Sum_probs=56.9

Q ss_pred             CCeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 043029           28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHL   90 (109)
Q Consensus        28 s~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~   90 (109)
                      |+|+||+++++|+|+|+|+++.  .|++++||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~--~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS--GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC--CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999964  369999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.89  E-value=1.1e-22  Score=127.27  Aligned_cols=64  Identities=63%  Similarity=1.132  Sum_probs=59.8

Q ss_pred             CeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCC
Q 043029           29 SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLIGSK   94 (109)
Q Consensus        29 ~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~~~~~   94 (109)
                      +|+||+++++|+|+|+|+++.  +|++++||+|+|+||||.|||.++++++|.++.+|||+..|++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~--~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS--KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC--CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            589999888899999999966  6799999999999999999999999999999999999998863

>PHA00280 putative NHN endonuclease

Probab=99.68  E-value=1.4e-16  Score=111.69  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             chhhhhhhcccCCCCCCeeeeEECC-CCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCC
Q 043029           13 SSDVACFNMQLRRLQKSFRGVRKRP-WGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKL   85 (109)
Q Consensus        13 ~~~~~~~~~~~~~~~s~yrGV~~~~-~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~   85 (109)
                      .++...+....+.++|+|+||++.+ .|||+|+|.+    +||+++||.|+++|+|+.||+ ++.+|||+++..
T Consensus        52 ~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~----~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         52 PKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA----EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             HHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE----CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            3444444445567889999999765 4999999998    679999999999999999997 778999999863

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.34  E-value=4.1e-12  Score=76.66  Aligned_cols=53  Identities=26%  Similarity=0.409  Sum_probs=45.2

Q ss_pred             CCeeeeEECC-CCceEEEEeeCCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhhCC
Q 043029           28 KSFRGVRKRP-WGKFAAEIRDGKKKTG--ARVWLGTYDTPEDAALAYDRAAFKIHGQ   81 (109)
Q Consensus        28 s~yrGV~~~~-~gkw~A~I~~~~~~~G--k~~~LG~f~t~eeAA~AYD~aa~~l~G~   81 (109)
                      |+|+||++.+ .++|+|+|++... +|  +.++||.|++++||++|++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~-~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSE-NGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCC-TTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEccc-CcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999766 5999999998422 32  8999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=84.25  E-value=5.8  Score=22.60  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=28.0

Q ss_pred             ceEEEEe--eCCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhh
Q 043029           40 KFAAEIR--DGKKKTG--ARVWLGTYDTPEDAALAYDRAAFKIH   79 (109)
Q Consensus        40 kw~A~I~--~~~~~~G--k~~~LG~f~t~eeAA~AYD~aa~~l~   79 (109)
                      +|...|.  .+.  .|  ++++-+-|.|..||-.+...+...+.
T Consensus         1 ~w~~~v~g~~~~--~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDE--TGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECC--CCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5778883  221  34  56778889999999999988777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		6e-21
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-20

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
          K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct: 4  KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
Query: 88 PHLIGS 93
          P  + S
Sbjct: 63 PLRVNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Query: 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
          K +RGVR+RPWGKFAAEIRD   K GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct: 1  KHYRGVRQRPWGKFAAEIRD-PAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
Query: 88 P 88
          P
Sbjct: 60 P 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  119 bits (301), Expect = 2e-37
 Identities = 45/64 (70%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
          K +RGVR+RPWGKFAAEIRD  K  GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKN-GARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Query: 88 PHLI 91
          P  +
Sbjct: 60 PLRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	94.18
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	88.75
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	83.78

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.6e-26  Score=144.37  Aligned_cols=62  Identities=71%  Similarity=1.251  Sum_probs=57.5

Q ss_pred             CeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q 043029           29 SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLI   91 (109)
Q Consensus        29 ~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~~   91 (109)
                      +|+||+++++|||+|+|+++.+ +|+++|||+|+|+||||+|||.++++|+|..+.+|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~-~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAK-NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTT-TSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccC-CCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999998889999999999752 4799999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=94.18  E-value=0.034  Score=35.33  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             CCCCCeeeeEECCC-CceEEEEeeCC
Q 043029           25 RLQKSFRGVRKRPW-GKFAAEIRDGK   49 (109)
Q Consensus        25 ~~~s~yrGV~~~~~-gkw~A~I~~~~   49 (109)
                      ..+|+|.||++.+. +.|.|+...++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g   28 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGA   28 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETT
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCC
Confidence            35799999998775 89999999854

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=88.75  E-value=0.065  Score=37.68  Aligned_cols=38  Identities=8%  Similarity=-0.120  Sum_probs=28.2

Q ss_pred             eeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHH
Q 043029           30 FRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYD   72 (109)
Q Consensus        30 yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD   72 (109)
                      .+||.....++|.+.|.+.     +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~-----~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS-----PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC-----TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc-----CCceEEeeCCHHHHHHHHC
Confidence            4566542236688999873     4567999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=83.78  E-value=1.4  Score=32.41  Aligned_cols=42  Identities=19%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             eeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 043029           31 RGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKI   78 (109)
Q Consensus        31 rGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l   78 (109)
                      .||+.++.|.|+.+...    +||++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~----~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR----TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT----TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec----CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            36777777889877654    678899996  8888887776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (254), Expect = 1e-30
 Identities = 45/64 (70%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 28 KSFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNF 87
          K +RGVR+RPWGKFAAEIRD  K  GARVWLGT++T EDAALAYDRAAF++ G +A LNF
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKN-GARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Query: 88 PHLI 91
          P  +
Sbjct: 60 PLRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.94

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=3e-27  Score=146.44  Aligned_cols=62  Identities=71%  Similarity=1.251  Sum_probs=57.2

Q ss_pred             CeeeeEECCCCceEEEEeeCCCCCCcEEecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q 043029           29 SFRGVRKRPWGKFAAEIRDGKKKTGARVWLGTYDTPEDAALAYDRAAFKIHGQKAKLNFPHLI   91 (109)
Q Consensus        29 ~yrGV~~~~~gkw~A~I~~~~~~~Gk~~~LG~f~t~eeAA~AYD~aa~~l~G~~a~~NFp~~~   91 (109)
                      +|+||+++++|||+|+|+++.. +++++|||+|+|+||||+|||+++++++|.++.+|||..+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~-~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAK-NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTT-TSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCC-CCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            5999998888999999998753 6789999999999999999999999999999999999863