Citrus Sinensis ID: 043115

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
MKNYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
cccccHHHHHHHHHHHHHHHEEcccccccccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEEcccccccccEEEEEEcccEEEEccEEEEcccccccEEEEEEcccEEEEEccEEEcccccEEcccccEEEEccEEEEEcEEEEccccEEcc
ccccHHHHHHHHHHHccccccccccccHHHHHcccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccEEEEEEEcccccEEEEcccccccEcEEEEEEEcccEEEEEEEEEcccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEc
MKNYSQNVSILVVATTIVFASITatcgstatipkdFSAAVLIRVEKygrgdfrtiqgaidsvpdnnseLVFISVapgiyrekiivpankpfitisgtkashtkitwsdggsildsaTFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHtllddtgnhyyskCIIEGATDFISgnanslfe
MKNYSQNVSILVVATTIVFASITAtcgstatipkdfSAAVLIRVEKYGRGDFRTIQgaidsvpdnnsELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
MKNYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
******NVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFIS********
******N*SILVVATTIVFASITA*************AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
MKNYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
***YSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKNYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query196 2.2.26 [Sep-21-2011]
Q9SIJ9 352 Putative pectinesterase 1 yes no 0.806 0.448 0.643 1e-56
Q8VYZ3 383 Probable pectinesterase 5 no no 0.831 0.425 0.469 1e-33
Q9FM79 380 Pectinesterase QRT1 OS=Ar no no 0.795 0.410 0.450 4e-33
Q9LY18 361 Probable pectinesterase 4 no no 0.959 0.520 0.368 8e-33
Q8LPF3 362 Probable pectinesterase 6 no no 0.816 0.441 0.420 2e-32
Q9LY17 361 Probable pectinesterase 5 no no 0.959 0.520 0.36 8e-32
Q3E9D3 330 Probable pectinesterase 5 no no 0.780 0.463 0.429 4e-31
Q4PSN0 335 Probable pectinesterase 2 no no 0.780 0.456 0.429 3e-30
Q9ZQA3 407 Probable pectinesterase 1 no no 0.857 0.412 0.382 1e-29
Q9LSP1 344 Probable pectinesterase 6 no no 0.933 0.531 0.386 3e-29
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function desciption
 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 129/160 (80%), Gaps = 2/160 (1%)

Query: 39  AVLIRVEKYGRGDFRTIQGAIDSVPDN--NSELVFISVAPGIYREKIIVPANKPFITISG 96
           A+LIRV++ G+GDF  IQ AI+S+P N  NS+L FI V PGIYREK+++PA KP+IT+SG
Sbjct: 48  AILIRVDQSGKGDFSKIQEAIESIPPNLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSG 107

Query: 97  TKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYG 156
           T+AS+T + WSDG  IL+S T T+ AS FV R LTIQN +G+ G+AVALRV+AD+AAFYG
Sbjct: 108 TQASNTFLIWSDGEDILESPTLTIFASDFVCRFLTIQNKFGTAGRAVALRVAADKAAFYG 167

Query: 157 CRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           C I SYQ TLLDD GNHY+  C IEGATDFI G+A+SL+E
Sbjct: 168 CVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYE 207
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q3E9D3|PME55_ARATH Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
224077850 315 predicted protein [Populus trichocarpa] 0.826 0.514 0.760 2e-65
255543703 346 Pectinesterase-3 precursor, putative [Ri 0.826 0.468 0.734 2e-63
147843788 342 hypothetical protein VITISV_004378 [Viti 0.862 0.494 0.680 2e-60
302142511 422 unnamed protein product [Vitis vinifera] 0.836 0.388 0.676 2e-60
225458247 365 PREDICTED: putative pectinesterase 11 [V 0.836 0.449 0.676 2e-60
359475108 318 PREDICTED: putative pectinesterase 11 [V 0.862 0.531 0.674 8e-60
297744396 365 unnamed protein product [Vitis vinifera] 0.862 0.463 0.674 1e-59
449462266 314 PREDICTED: putative pectinesterase 11-li 0.852 0.531 0.658 9e-58
15226598 352 pectinesterase 11 [Arabidopsis thaliana] 0.806 0.448 0.643 7e-55
297825017 352 pectinesterase family protein [Arabidops 0.806 0.448 0.637 1e-54
>gi|224077850|ref|XP_002305435.1| predicted protein [Populus trichocarpa] gi|222848399|gb|EEE85946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 138/163 (84%), Gaps = 1/163 (0%)

Query: 35  DFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIY-REKIIVPANKPFIT 93
           D S A+LIRVE+ G+GDF+ IQ AIDSVP NNSELVFI V PG Y REKI+VPA+KPFIT
Sbjct: 20  DMSTAILIRVEQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYSREKIVVPADKPFIT 79

Query: 94  ISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAA 153
           +SGT+ S T ITW+DGG+I++S T TVLAS FV R LTIQNT+GS GKAVALRVS DRAA
Sbjct: 80  LSGTQPSDTIITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGKAVALRVSGDRAA 139

Query: 154 FYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           FYGCRILSYQ TLLDDTG+HYYS C IEGATDFI GNA SLFE
Sbjct: 140 FYGCRILSYQDTLLDDTGSHYYSNCYIEGATDFICGNAASLFE 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543703|ref|XP_002512914.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223547925|gb|EEF49417.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147843788|emb|CAN79458.1| hypothetical protein VITISV_004378 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142511|emb|CBI19714.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458247|ref|XP_002281308.1| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475108|ref|XP_002280496.2| PREDICTED: putative pectinesterase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744396|emb|CBI37658.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462266|ref|XP_004148862.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] gi|449507359|ref|XP_004163009.1| PREDICTED: putative pectinesterase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15226598|ref|NP_179755.1| pectinesterase 11 [Arabidopsis thaliana] gi|75206124|sp|Q9SIJ9.1|PME11_ARATH RecName: Full=Putative pectinesterase 11; Short=PE 11; AltName: Full=Pectin methylesterase 11; Short=AtPME11 gi|4567229|gb|AAD23644.1| putative pectinesterase [Arabidopsis thaliana] gi|330252108|gb|AEC07202.1| pectinesterase 11 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825017|ref|XP_002880391.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326230|gb|EFH56650.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
TAIR|locus:2049344 352 PE11 "pectinesterase 11" [Arab 0.969 0.539 0.572 5.3e-56
TAIR|locus:2183364 361 AT5G07430 [Arabidopsis thalian 0.811 0.440 0.419 7.1e-34
TAIR|locus:2183349 361 AT5G07420 [Arabidopsis thalian 0.806 0.437 0.425 1.1e-33
TAIR|locus:2183214 383 AT5G19730 [Arabidopsis thalian 0.831 0.425 0.469 9.8e-32
TAIR|locus:2169023 362 PME5 "pectin methylesterase 5" 0.795 0.430 0.424 1.6e-31
TAIR|locus:2179659 330 AT5G18990 [Arabidopsis thalian 0.780 0.463 0.429 2.3e-30
TAIR|locus:2093736 335 AT3G24130 [Arabidopsis thalian 0.780 0.456 0.429 2.1e-29
TAIR|locus:2040535 407 AT2G36710 [Arabidopsis thalian 0.857 0.412 0.387 3.4e-29
TAIR|locus:2151586 338 AT5G61680 [Arabidopsis thalian 0.954 0.553 0.368 4.4e-29
TAIR|locus:2086037 344 AT3G17060 [Arabidopsis thalian 0.790 0.450 0.408 1.9e-28
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 111/194 (57%), Positives = 148/194 (76%)

Query:     7 NVSILVVATTIVFASITATCGSTATIPK--DFSAAVLIRVEKYGRGDFRTIQGAIDSVPD 64
             N   +++    + +SIT++  ++++ P   DFS A+LIRV++ G+GDF  IQ AI+S+P 
Sbjct:    14 NYHHIIIINIFILSSITSSSMASSSSPSSIDFSTAILIRVDQSGKGDFSKIQEAIESIPP 73

Query:    65 N--NSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLA 122
             N  NS+L FI V PGIYREK+++PA KP+IT+SGT+AS+T + WSDG  IL+S T T+ A
Sbjct:    74 NLNNSQLYFIWVKPGIYREKVVIPAEKPYITLSGTQASNTFLIWSDGEDILESPTLTIFA 133

Query:   123 SHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182
             S FV R LTIQN +G+ G+AVALRV+AD+AAFYGC I SYQ TLLDD GNHY+  C IEG
Sbjct:   134 SDFVCRFLTIQNKFGTAGRAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEG 193

Query:   183 ATDFISGNANSLFE 196
             ATDFI G+A+SL+E
Sbjct:   194 ATDFICGSASSLYE 207
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179659 AT5G18990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093736 AT3G24130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151586 AT5G61680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086037 AT3G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 3e-93
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 1e-54
PLN02671 359 PLN02671, PLN02671, pectinesterase 3e-49
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 2e-47
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 3e-47
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 3e-43
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 4e-43
PLN02773 317 PLN02773, PLN02773, pectinesterase 2e-42
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 5e-41
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 1e-34
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 2e-30
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-28
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 2e-28
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 3e-28
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-27
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 7e-27
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 6e-26
PLN02197 588 PLN02197, PLN02197, pectinesterase 6e-26
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-25
PLN02314 586 PLN02314, PLN02314, pectinesterase 3e-24
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 4e-24
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 5e-24
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 8e-24
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 2e-23
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-23
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 4e-23
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 5e-23
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 2e-21
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 7e-21
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-20
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 8e-20
PRK10531 422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-18
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 3e-17
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 5e-15
TIGR04247 377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 5e-04
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information 
 Score =  273 bits (699), Expect = 3e-93
 Identities = 121/167 (72%), Positives = 139/167 (83%)

Query: 30  ATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANK 89
           +T   D S A+LIRV++ G+GDFR IQ AID+VP NNS+LVFI V PGIYREK++VPA+K
Sbjct: 1   STSSIDLSTAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADK 60

Query: 90  PFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSA 149
           PFIT+SGT+AS+T ITW+DGG I +S T +VLAS FV R LTIQNT+GS GKAVALRV+ 
Sbjct: 61  PFITLSGTQASNTIITWNDGGDIFESPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAG 120

Query: 150 DRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           DRAAFYGCRILSYQ TLLDDTG HYY  C IEGATDFI GNA SLFE
Sbjct: 121 DRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASLFE 167

Length = 293
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 196
PLN02176 340 putative pectinesterase 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02432 293 putative pectinesterase 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02665 366 pectinesterase family protein 100.0
PLN02773 317 pectinesterase 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02480 343 Probable pectinesterase 100.0
PLN02671 359 pectinesterase 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02197 588 pectinesterase 100.0
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PRK10531 422 acyl-CoA thioesterase; Provisional 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02314 586 pectinesterase 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.64
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.3
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 99.18
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 99.11
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.82
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.28
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 98.06
PLN03010 409 polygalacturonase 97.74
PLN02793 443 Probable polygalacturonase 97.45
PLN02155 394 polygalacturonase 97.1
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 96.94
smart00656190 Amb_all Amb_all domain. 96.93
PLN02671 359 pectinesterase 96.9
PLN03003 456 Probable polygalacturonase At3g15720 96.67
PLN02218 431 polygalacturonase ADPG 96.58
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.27
PLN02773 317 pectinesterase 96.24
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 96.17
PLN02480 343 Probable pectinesterase 96.0
smart00722146 CASH Domain present in carbohydrate binding protei 95.69
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.61
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 95.57
KOG1777 625 consensus Putative Zn-finger protein [General func 95.54
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.45
PLN02634 359 probable pectinesterase 95.36
PLN02304 379 probable pectinesterase 95.29
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 95.25
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 95.24
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 95.24
PLN02916 502 pectinesterase family protein 95.23
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 95.22
PLN02682 369 pectinesterase family protein 95.17
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 95.17
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.14
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 95.1
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 95.03
PF05048 236 NosD: Periplasmic copper-binding protein (NosD); I 95.02
PLN02314 586 pectinesterase 95.01
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 94.98
PLN02432 293 putative pectinesterase 94.97
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 94.96
PLN02197 588 pectinesterase 94.93
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 94.85
PLN02301 548 pectinesterase/pectinesterase inhibitor 94.84
PLN02497 331 probable pectinesterase 94.65
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 94.63
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 94.6
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 94.56
PLN02176 340 putative pectinesterase 94.55
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 94.48
PLN02313 587 Pectinesterase/pectinesterase inhibitor 94.42
PLN02665 366 pectinesterase family protein 94.33
PRK10531 422 acyl-CoA thioesterase; Provisional 93.72
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.7
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 90.16
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 90.1
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 89.54
PLN02218 431 polygalacturonase ADPG 89.21
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 88.6
PLN02793 443 Probable polygalacturonase 87.38
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 86.16
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 85.21
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 84.14
PLN02155 394 polygalacturonase 81.83
>PLN02176 putative pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=368.84  Aligned_cols=190  Identities=34%  Similarity=0.482  Sum_probs=166.7

Q ss_pred             ccccchhhhhhHhhhheeeeccccCCCCCCCCCCCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeee
Q 043115            3 NYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREK   82 (196)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~   82 (196)
                      -||-+|++|.+..|.+-.+.-.++    ....++..+.+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek   81 (340)
T PLN02176          6 FHSFCYSYFKVCLLVMTLAYGSAE----YDAASSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYREK   81 (340)
T ss_pred             ehhhhHHHHHHHHHHHHHhhcccc----ccccccccCceEEECCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEEEE
Confidence            478888777655544433322121    1223455666899999999999999999999999988899999999999999


Q ss_pred             EEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEEEecCCC-------CCcEEEEEEeCCcEEEE
Q 043115           83 IIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGS-------YGKAVALRVSADRAAFY  155 (196)
Q Consensus        83 v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns~g~-------~~~a~al~v~~d~~~~~  155 (196)
                      |.||+.||+|+|+|++++.|+|+++++..+..+++|.+.+++|+++||||+|+++.       .+||+||++.+|++.|+
T Consensus        82 V~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~  161 (340)
T PLN02176         82 VTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAII  161 (340)
T ss_pred             EEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEE
Confidence            99999999999999999999999988777788999999999999999999999852       36999999999999999


Q ss_pred             ccEEeecceEEEecCCceeEEcCEEEccceeEecCcceeeC
Q 043115          156 GCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE  196 (196)
Q Consensus       156 ~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~fe  196 (196)
                      +|+|.|+|||||.+.|||||++|+|||+||||||+|+++||
T Consensus       162 ~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~a~Fe  202 (340)
T PLN02176        162 DSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQSIFE  202 (340)
T ss_pred             ccEEecccceeEeCCcCEEEEecEEEecccEEecCceEEEe
Confidence            99999999999999999999999999999999999999997

>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 5e-23
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 4e-19
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-09
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 3e-09
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 4e-09
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 2e-08
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 48  GRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWS 107
           G GD++T+  A+ + P+++     I +  G+YRE + VP  K  I   G   + T IT S
Sbjct: 15  GSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITAS 74
Query: 108 ----DGGSILDSATFTVLASHFVARSLTIQNTYGSYG-KAVALRVSADRAAFYGCRILSY 162
               DG +  +SAT   + + F+AR +T QNT G+   +AVALRV +D +AFY C IL+Y
Sbjct: 75  KNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAY 134
Query: 163 QHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           Q +L   +   ++  C I G  DFI GNA  + +
Sbjct: 135 QDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 7e-65
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 1e-63
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 6e-57
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 3e-56
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-49
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  201 bits (513), Expect = 7e-65
 Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 5/160 (3%)

Query: 42  IRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASH 101
           + V   G GD++T+  A+ + P+++     I +  G+YRE + VP  K  I   G   + 
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 102 TKITWS----DGGSILDSATFTVLASHFVARSLTIQNTYGSYGK-AVALRVSADRAAFYG 156
           T IT S    DG +  +SAT   + + F+AR +T QNT G+    AVALRV +D +AFY 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYR 128

Query: 157 CRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           C IL+YQ +L   +   ++  C I G  DFI GNA  + +
Sbjct: 129 CDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 100.0
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.76
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.74
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.2
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.38
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.06
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 98.04
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.0
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 97.89
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 97.75
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.58
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.56
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.52
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.52
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.46
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 97.41
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 97.39
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.38
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.23
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 97.2
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.13
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.12
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.12
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.05
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.05
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.93
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 96.89
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 96.81
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.68
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.55
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 96.25
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 95.51
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.37
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 94.56
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 93.84
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 93.79
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 93.67
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 93.59
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 93.56
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 93.43
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.33
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 93.2
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 93.05
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 92.28
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 91.76
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 90.14
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 89.1
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 88.1
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 86.02
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 84.27
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 83.27
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=4.3e-47  Score=331.05  Aligned_cols=156  Identities=35%  Similarity=0.534  Sum_probs=147.3

Q ss_pred             EEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCCe
Q 043115           41 LIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDSA  116 (196)
Q Consensus        41 ~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~~  116 (196)
                      +++|+++|+|+|+|||+||++||+++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++..    .++..++
T Consensus         4 ~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~sa   83 (317)
T 1xg2_A            4 NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSA   83 (317)
T ss_dssp             SEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGC
T ss_pred             eEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCccccee
Confidence            478999999999999999999999999999999999999999999988999999999999999999863    3456789


Q ss_pred             EEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcceee
Q 043115          117 TFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLF  195 (196)
Q Consensus       117 ~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~f  195 (196)
                      +|.|.+++|+++||||+|++++ .+||+||++.+|++.|++|+|.|+|||||++.+|+||++|+|+|+||||||.|+++|
T Consensus        84 tv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf  163 (317)
T 1xg2_A           84 TLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVF  163 (317)
T ss_dssp             SEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEE
T ss_pred             EEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEEE
Confidence            9999999999999999999886 469999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 043115          196 E  196 (196)
Q Consensus       196 e  196 (196)
                      |
T Consensus       164 ~  164 (317)
T 1xg2_A          164 Q  164 (317)
T ss_dssp             E
T ss_pred             e
Confidence            6
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 196
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 5e-56
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-39
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 0.002
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  177 bits (451), Expect = 5e-56
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 5/158 (3%)

Query: 44  VEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTK 103
           V   G GD++T+  A+ + P+++     I +  G+YRE + VP  K  I   G   + T 
Sbjct: 11  VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTI 70

Query: 104 ITWS----DGGSILDSATFTVLASHFVARSLTIQNTYG-SYGKAVALRVSADRAAFYGCR 158
           IT S    DG +  +SAT   + + F+AR +T QNT G +  +AVALRV +D +AFY C 
Sbjct: 71  ITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCD 130

Query: 159 ILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196
           IL+YQ +L   +   ++  C I G  DFI GNA  + +
Sbjct: 131 ILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.29
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 99.28
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.45
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.28
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.24
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.1
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.92
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.89
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.88
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.87
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 96.83
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 96.73
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.59
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.79
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 94.29
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.15
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.48
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 90.57
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 90.2
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.97
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 89.78
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 88.84
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 87.3
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 86.64
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 81.01
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.7e-50  Score=350.23  Aligned_cols=155  Identities=37%  Similarity=0.636  Sum_probs=147.5

Q ss_pred             EEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC----CCCCCeE
Q 043115           42 IRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG----SILDSAT  117 (196)
Q Consensus        42 i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----~~~~~~~  117 (196)
                      ++|++||+|+|+|||+|||++|+++++|++|+|+||+|+|+|.|++.||+|||+|++++.++|+++...    ++..+++
T Consensus         9 i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat   88 (319)
T d1gq8a_           9 VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSAT   88 (319)
T ss_dssp             EEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCS
T ss_pred             EEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccc
Confidence            889999999999999999999999889999999999999999999999999999999999999998542    3568899


Q ss_pred             EEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcceeeC
Q 043115          118 FTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE  196 (196)
Q Consensus       118 l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~fe  196 (196)
                      +.+.+++|+++||+|+|+++. .+||+||++.+|++.|++|+|.|+|||||+++|||||++|+|+|+||||||+|+++||
T Consensus        89 ~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~  168 (319)
T d1gq8a_          89 VAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ  168 (319)
T ss_dssp             EEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEE
T ss_pred             eeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEee
Confidence            999999999999999999976 4699999999999999999999999999999999999999999999999999999996
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure