Citrus Sinensis ID: 043184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
DHRRHGKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGTTTTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYTSNLFNPQSSSSSSSTPSTFSSSTTSLEQQQEMTRFSSNYESLSGSDFQDHSNNPNG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHccHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
dhrrhgkrplpleaspeekekeqdnnfpawttheSDMSAMVSALTQVIGttttdadadpspaavkeessdnplqqtqtqtqdqdqegtrrrhyrgvrqrpwgkwaaeirDPKKAARVWLGTFETAEDAAMAYDKAALKFKgtkaklnfpervqgTTEFVYldssssssafhhhhesvmpappprptsmhhgaypDLLQYAQILssddatfnyytsnlfnpqssssssstpstfsssttSLEQQQEMTRFSsnyeslsgsdfqdhsnnpng
Flexible Loop (DISEMBL)
dhrrhgkrplpleaspeekekeqdNNFPAWTTHESDMSAMVSALTQVIGTTTTDADADPSPAAVkeessdnplqqtqtqtqdqdqegtrrrhyrgvrqrpwgkwaaeirdpkkAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYTSNLfnpqsssssssTPSTFSSSTTSLEQQQEMTRFSSNyeslsgsdfqdhsnnpng
Low Complexity Region (SEG)
DHRRHGKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGttttdadadpspaaVKEESSDNPLqqtqtqtqdqdqEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETaedaamaydkaaLKFKGTKAKLNFPERVQGTTEFVYLDssssssafhhhhesVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYtsnlfnpqssssssstpstfsssttsleqqqeMTRFSSNYESLSGSDFQDHSNNPNG
Disordered region (IsUnstruct)
***********************************************************************************************VRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYL******************************AYPDLLQYAQILSSDDATFNYYTSNL*****************************************************
Disordered Region (DISOPRED)
*****************************WTTHESDMSAMVSALTQV************************************************VRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPER***********************************************************************************************************************
Disordered Region (DISEMBL)
*********LPLEA**********NNFPAWTTHESDMSAMVSALTQVIGTTTT*********************************************RPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYL********************PPRPTSMHHGAYPDLLQYAQILSSDDATFNYYTSNLF*********************************NYES***************
Disordered Region (DISPRO)
*******RP*********K*KEQDNNFPAWTTHESDMSAMVSALTQV******************************************RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPER************************************MHHGAYPDLLQYAQILSSDDATFNYYTSNLFN***************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DHRRHGKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGTTTTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYTSNLFNPQSSSSSSSTPSTFSSSTTSLEQQQEMTRFSSNYESLSGSDFQDHSNNPNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9LYU3	212	Ethylene-responsive trans	yes	no	0.6	0.764	0.540	4e-40
Q9FH54	248	Ethylene-responsive trans	no	no	0.585	0.637	0.567	8e-40
Q9LY29	263	Ethylene-responsive trans	no	no	0.533	0.547	0.596	1e-36
P93007	218	Ethylene-responsive trans	no	no	0.470	0.582	0.5	4e-32
Q70II3	220	Ethylene-responsive trans	no	no	0.429	0.527	0.521	9e-25
O80337	268	Ethylene-responsive trans	no	no	0.3	0.302	0.609	6e-24
Q40479	233	Ethylene-responsive trans	N/A	no	0.359	0.416	0.542	8e-24
O80338	243	Ethylene-responsive trans	no	no	0.333	0.370	0.569	1e-23
O22259	171	Ethylene-responsive trans	no	no	0.259	0.409	0.657	2e-23
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.229	0.261	0.761	3e-23

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 118/183 (64%), Gaps = 21/183 (11%)

Query: 40  MVSALTQVIGTTTTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQR 99
           MVSAL++VI         +P+   VK+E     L ++     DQDQ   RRRHYRGVRQR
Sbjct: 1   MVSALSRVI--------ENPTDPPVKQE-----LDKSDQHQPDQDQ--PRRRHYRGVRQR 45

Query: 100 PWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQG---TT 156
           PWGKWAAEIRDPKKAARVWLGTFETAE+AA+AYD+AALKFKGTKAKLNFPERVQG   TT
Sbjct: 46  PWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTT 105

Query: 157 EFVYLDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDAT-FNYYTS 215
              +     S S          P+       M +    D+LQYAQ+L+S++    +YYTS
Sbjct: 106 TISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQ--DILQYAQLLTSNNEVDLSYYTS 163

Query: 216 NLF 218
            LF
Sbjct: 164 TLF 166

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score =  164 bits (414), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 107/162 (66%), Gaps = 4/162 (2%)

Query: 5   HGKRPLPLEASPEEKEKEQDNNFPAWTTH-ESDMSAMVSALTQVIGTTTTDADADPSPAA 63
           +GKRP        E+ +E +N FP ++   + DM  MVSALTQVIG   + +  + S   
Sbjct: 2   YGKRPF--GGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSID 59

Query: 64  VKEESSDNPLQ-QTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF 122
               S  NP     Q     QDQ   RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF
Sbjct: 60  DNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF 119

Query: 123 ETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSS 164
           ETAE AA+AYD+AALKFKG+KAKLNFPERVQ  +   Y  S+
Sbjct: 120 ETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSN 161

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY29|EF115_ARATH Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/151 (59%), Positives = 105/151 (69%), Gaps = 7/151 (4%)

Query: 5   HGKRPLPLEASPEEKEKEQDNN-FPAWTTH-ESDMSAMVSALTQVIGTTTTDADADPSPA 62
           +GKRP   + S E+KE + D N FP ++   + DM AMVSALTQVIG  ++  D +    
Sbjct: 7   YGKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQP 66

Query: 63  AVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF 122
            V  +   NP          QDQ   R+RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF
Sbjct: 67  VVYNQQDPNP-----PAPPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTF 121

Query: 123 ETAEDAAMAYDKAALKFKGTKAKLNFPERVQ 153
           ETAE AA+AYD AALKFKG+KAKLNFPER Q
Sbjct: 122 ETAEAAALAYDNAALKFKGSKAKLNFPERAQ 152

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 99/148 (66%), Gaps = 21/148 (14%)

Query: 6   GKRPLPLEASPEEKEKEQDNNFPAWTTHESDMSAMVSALTQVIGTTTTDADADPSPAAVK 65
           GKRPL  E+    +E++++    + T  ESD+S  VS LT             P P+++ 
Sbjct: 4   GKRPLSPESMAGNREEKKELCCCS-TLSESDVSDFVSELT-----------GQPIPSSID 51

Query: 66  EESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETA 125
           ++SS   LQ+         +  +R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTF+TA
Sbjct: 52  DQSSSLTLQE---------KSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTA 102

Query: 126 EDAAMAYDKAALKFKGTKAKLNFPERVQ 153
           E+AA+AYDKAA +F+G KAKLNFPE ++
Sbjct: 103 EEAALAYDKAAFEFRGHKAKLNFPEHIR 130

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q70II3|EF110_ARATH Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 95/138 (68%), Gaps = 22/138 (15%)

Query: 37  MSAMVSALTQVIGTTT-TDA-------------------DADPSPAA-VKEESSDNPLQQ 75
           MSAMVSALTQV+   + T+A                   D+ P P++  + +SS NP+++
Sbjct: 1   MSAMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEE 60

Query: 76  TQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKA 135
           + ++   ++    +RR YRGVRQRPWGKWAAEIRDP +AARVWLGTF+TAE AA AYD+A
Sbjct: 61  SMSKAFPEEAREKKRR-YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEA 119

Query: 136 ALKFKGTKAKLNFPERVQ 153
           AL+F+G KAKLNFPE V+
Sbjct: 120 ALRFRGNKAKLNFPEDVR 137

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 72  PLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEDAAM 130
           P+++ +T          + +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFETAEDAA+
Sbjct: 127 PVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAAL 186

Query: 131 AYDKAALKFKGTKAKLNFPERV 152
           AYD+AA + +G++A LNFP RV
Sbjct: 187 AYDRAAFRMRGSRALLNFPLRV 208

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 72/107 (67%), Gaps = 10/107 (9%)

Query: 51  TTTDADADP----SPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAA 106
           T+T+  A+P     PA +   S   P + T  Q         + RHYRGVRQRPWGK+AA
Sbjct: 58  TSTEIKAEPREEIEPATIPVPSVAPPAETTTAQAVV-----PKGRHYRGVRQRPWGKFAA 112

Query: 107 EIRDP-KKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERV 152
           EIRDP K  ARVWLGT+ETAE+AA+AYDKAA + +G+KA LNFP R+
Sbjct: 113 EIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRI 159

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 3/93 (3%)

Query: 63  AVKEESSDN--PLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWL 119
           AVK E ++N   +++   +     +   + +HYRGVRQRPWGK+AAEIRDP K  ARVWL
Sbjct: 85  AVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWL 144

Query: 120 GTFETAEDAAMAYDKAALKFKGTKAKLNFPERV 152
           GTFETAEDAA+AYD AA + +G++A LNFP RV
Sbjct: 145 GTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 58/70 (82%)

Query: 80  TQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKF 139
           ++++D +  R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF+TA++AA AYD AA+K 
Sbjct: 37  SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKI 96

Query: 140 KGTKAKLNFP 149
           +G KAKLNFP
Sbjct: 97  RGRKAKLNFP 106

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 91  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFP 149
           RHYRGVRQRPWGK+AAEIRDP K  ARVWLGT+ETAE+AA+AYDKAA + +G+KA LNFP
Sbjct: 101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160

Query: 150 ERV 152
            R+
Sbjct: 161 HRI 163

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
255543212	249	AP2 domain transcription factor RAP2.3,	0.825	0.895	0.558	5e-59
224075453	234	AP2/ERF domain-containing transcription	0.674	0.777	0.638	4e-54
225456495	315	PREDICTED: ethylene-responsive transcrip	0.785	0.673	0.543	1e-52
224053569	231	AP2/ERF domain-containing transcription	0.662	0.774	0.631	4e-51
292668929	245	AP2 domain class transcription factor [M	0.674	0.742	0.6	1e-50
226433075	226	RAP2-like protein [Juglans nigra]	0.629	0.752	0.58	3e-49
388515015	202	unknown [Lotus japonicus]	0.637	0.851	0.541	2e-48
357502687	239	Ethylene-responsive transcription factor	0.744	0.841	0.5	9e-46
356523712	240	PREDICTED: ethylene-responsive transcrip	0.666	0.75	0.524	6e-44
300079024	235	ethylene response factor 14 [Actinidia d	0.685	0.787	0.541	6e-43

>gi|255543212|ref|XP_002512669.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis] gi|223548630|gb|EEF50121.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/258 (55%), Positives = 167/258 (64%), Gaps = 35/258 (13%)

Query: 37  MSAMVSALTQVIGTTTTDAD---ADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHY 93
           MSAMVSAL+QVI T+  D        +P AV++      L Q+Q     QDQE TRRRHY
Sbjct: 1   MSAMVSALSQVIATSADDNKPTVVQSAPLAVEQSLVKEELDQSQPT---QDQENTRRRHY 57

Query: 94  RGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQ 153
           RGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAEDAA+AYDKAALKFKGTKAKLNFPERVQ
Sbjct: 58  RGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVQ 117

Query: 154 GTTEFVYLDSSSSSSAFHHHHESVMPAPPPRPTSM----------------HHGAYPDLL 197
           G  EF Y  ++S  S+          +P   P  M                    YPDLL
Sbjct: 118 GKPEFSYFMTTSGDSSSSI-------SPGQNPMLMAPPASSYLPPPPPPSFPQETYPDLL 170

Query: 198 QYAQILSSDDATFNYYTSNLFN--PQSSSSSSSTP-STFSSSTTSLEQQQEMTRFSSNYE 254
           QYAQILSS DA+F YYTSNLFN  P +   SS+ P STF S      QQQ++ RFS  ++
Sbjct: 171 QYAQILSSTDASFPYYTSNLFNQQPYTPHYSSNEPSSTFLSQQQQQHQQQDLMRFSPWFD 230

Query: 255 SLSGSDFQDH---SNNPN 269
           S SGSD+Q+H   S+NP+
Sbjct: 231 SSSGSDYQEHGKDSSNPS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075453|ref|XP_002304640.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842072|gb|EEE79619.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/191 (63%), Positives = 137/191 (71%), Gaps = 9/191 (4%)

Query: 37  MSAMVSALTQVIGTTTTD-ADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRG 95
           MSAMVSALTQV+GTT  +      +P A+ +    +   Q+Q     QDQE TRRRHYRG
Sbjct: 1   MSAMVSALTQVMGTTDNNPTSVQSTPYALDQSVVKDEPDQSQPV---QDQENTRRRHYRG 57

Query: 96  VRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGT 155
           VRQRPWGKWAAEIRDPKKAARVWLGTF+TAEDAA+AYDKAALKFKGTKAKLNFPERVQG 
Sbjct: 58  VRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAVAYDKAALKFKGTKAKLNFPERVQGR 117

Query: 156 TEF-VYLDSSSSSSAFHHHHESVMPAPPPRPTSMHHG----AYPDLLQYAQILSSDDATF 210
           TEF  Y+ S +S++         +  PPP P           YPDLLQYAQILSS+DA F
Sbjct: 118 TEFGYYMGSGTSTNVLTEQSPRPVAPPPPPPPPPPSSFAPDTYPDLLQYAQILSSNDANF 177

Query: 211 NYYTSNLFNPQ 221
            YYTSNLFN Q
Sbjct: 178 PYYTSNLFNQQ 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456495|ref|XP_002280924.1| PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 147/219 (67%), Gaps = 7/219 (3%)

Query: 3   RRHGKRPLPLEASPEEKEKEQDNNFPAWTTH-ESDMSAMVSALTQVIGTTTTDADAD-PS 60
           RRHGKRPLP + + EEKE +QD+ FP ++   + DMSAMVSALTQVIG T  +   D  +
Sbjct: 37  RRHGKRPLPSDEA-EEKE-DQDHIFPVYSARSQQDMSAMVSALTQVIGNTDKNPLHDLGN 94

Query: 61  PAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLG 120
           P+ +   S+  P  Q     QDQ  +  RRRHYRGVRQRPWGKWAAEIRDP KAARVWLG
Sbjct: 95  PSPISHHSATTPHDQPSQLLQDQGNQ-LRRRHYRGVRQRPWGKWAAEIRDPNKAARVWLG 153

Query: 121 TFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSSSSSSAFHHHHESVMPA 180
           TF+TAEDAA+AYD+AAL+FKG KAKLNFPERVQG +E  YL ++          +   PA
Sbjct: 154 TFDTAEDAALAYDEAALRFKGNKAKLNFPERVQGRSELGYL-TNRQDFLLPQQQQLPNPA 212

Query: 181 PPPRP-TSMHHGAYPDLLQYAQILSSDDATFNYYTSNLF 218
            PP P  S+   +YP+L  YAQ+L       N+  S+L+
Sbjct: 213 VPPLPHPSLPRPSYPNLHHYAQLLPGGGGDLNHAMSSLY 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053569|ref|XP_002297877.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222845135|gb|EEE82682.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/187 (63%), Positives = 135/187 (72%), Gaps = 8/187 (4%)

Query: 37  MSAMVSALTQVIGTTTTDA-DADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRG 95
           MS+MVSALTQ +GTT  +      +P A+ +        Q+Q     QDQE TRRRHYRG
Sbjct: 1   MSSMVSALTQAMGTTDNNVPTVQSTPFALHQSVVKGEPDQSQPV---QDQENTRRRHYRG 57

Query: 96  VRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGT 155
           VRQRPWGKWAAEIRDPKKAARVWLGTF+TAEDAA+AYDKAALKFKG+KAKLNFPERV   
Sbjct: 58  VRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAVAYDKAALKFKGSKAKLNFPERVH-- 115

Query: 156 TEFVY-LDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYT 214
            EF Y + S +SS+     +   +  PPP P+S     YPDLLQYAQILSS+DA F YYT
Sbjct: 116 -EFGYFMSSGASSNVMTEQNPRPVAPPPPPPSSFAPDTYPDLLQYAQILSSNDANFPYYT 174

Query: 215 SNLFNPQ 221
           SNLFN Q
Sbjct: 175 SNLFNQQ 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668929|gb|ADE41119.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 134/195 (68%), Gaps = 13/195 (6%)

Query: 37  MSAMVSALTQVIGTTTTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGV 96
           MSAMVSALTQVIGTT   A   P+P ++ + SS    Q+       QDQE  RRRHYRGV
Sbjct: 1   MSAMVSALTQVIGTTEGHAAVQPNPTSISD-SSLLVKQEPDRSEPVQDQETVRRRHYRGV 59

Query: 97  RQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTT 156
           RQRPWGKWAAEIRDPKKAARVWLGTFETAEDAA+AYD AAL+FKGTKAKLNFPERVQG T
Sbjct: 60  RQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDNAALRFKGTKAKLNFPERVQGKT 119

Query: 157 EFVYL-------DSSSSSSAFHHHHESVM-----PAPPPRPTSMHHGAYPDLLQYAQILS 204
           +F  L        +SSS +A     +++M      AP P  TS     +PDL QYAQ+LS
Sbjct: 120 DFGILMGSSGTTTNSSSGAASTQRTQNLMRPAGQTAPAPLITSQQPETFPDLYQYAQLLS 179

Query: 205 SDDATFNYYTSNLFN 219
           S+DA F  Y+   FN
Sbjct: 180 SNDADFCNYSFYPFN 194

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226433075|gb|ACO55953.1| RAP2-like protein [Juglans nigra]

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 130/200 (65%), Gaps = 30/200 (15%)

Query: 37  MSAMVSALTQVIGTT------------TTDADADPSPAAVKEESSDN--PLQQTQTQTQD 82
           MSAMVSALTQV+GT              T  +A P    VKEE  D+  P+Q        
Sbjct: 1   MSAMVSALTQVMGTIEDQQSSLVQSTPLTIHEAGP----VKEEVPDSSQPVQ-------- 48

Query: 83  QDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGT 142
            DQE  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAA+AYD+AAL+FKGT
Sbjct: 49  -DQENARRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDRAALRFKGT 107

Query: 143 KAKLNFPERVQGTTEFVY---LDSSSSSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQY 199
           KAKLNFPERVQGT+EF Y     ++S S +            PP  T      +P L QY
Sbjct: 108 KAKLNFPERVQGTSEFGYPSGFGNTSVSQSAVPVQNPRPVVNPPPSTLPQESTFPGLYQY 167

Query: 200 AQILSSDDATFNYYTSNLFN 219
           AQ+LSS D  F YYTS+LFN
Sbjct: 168 AQLLSSSDVEFPYYTSSLFN 187

Source: Juglans nigra

Species: Juglans nigra

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515015|gb|AFK45569.1| unknown [Lotus japonicus]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/205 (54%), Positives = 130/205 (63%), Gaps = 33/205 (16%)

Query: 37  MSAMVSALTQVIGTT-----TTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRR 91
           MSAMVSAL QV+GTT        + + P    V EE    PL          DQE T++ 
Sbjct: 1   MSAMVSALAQVMGTTNPNQHMVQSTSFPVSTMVNEEPQPQPLL---------DQEITKKP 51

Query: 92  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPER 151
            YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAA AYDKAALKF+GTKAKLNFPER
Sbjct: 52  RYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAATAYDKAALKFRGTKAKLNFPER 111

Query: 152 VQGTTEFVYL----------------DSSSSSSAFHHHHESVMPAPPPRPTSMH---HGA 192
           +QG T+  Y+                 +S+SS+   H H   + A PP  ++ +   H  
Sbjct: 112 IQGNTDASYVVQQGSGSRNVIYTNDATTSASSAIIQHAHAHDINALPPSLSTTNEHDHQV 171

Query: 193 YPDLLQYAQILSSDDATFNYYTSNL 217
           +P+L QYAQILSSDDA   YYTS+L
Sbjct: 172 FPNLFQYAQILSSDDAELPYYTSHL 196

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502687|ref|XP_003621632.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355496647|gb|AES77850.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 147/236 (62%), Gaps = 35/236 (14%)

Query: 1   DHRRHGKRPLPLEASPEEKEKEQ----DNNFPAWTTHES--------DMSAMVSALTQVI 48
           D RR+GK PL  + S E KEKE+    +N F A+  + S        D+S MVSAL+QVI
Sbjct: 14  DPRRYGKLPLSSQTS-EAKEKEEYALVNNEFDAYNYYASNSNWCPDTDLSTMVSALSQVI 72

Query: 49  GTTTTDADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRRHYRGVRQRPWGKWAAEI 108
           GT++T+ +   +P   +  S+    + +Q      DQE  ++ HYRGVRQRPWGKWAAEI
Sbjct: 73  GTSSTNHN---NPHMAQSTSTTMVNEDSQQPQPLIDQETKKKPHYRGVRQRPWGKWAAEI 129

Query: 109 RDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQGTTEFVYLDSSS--- 165
           RDPKKAARVWLGTF+TAEDAA+AYDKAA KFKGTKAKLNFPERV     +    +S+   
Sbjct: 130 RDPKKAARVWLGTFDTAEDAALAYDKAAFKFKGTKAKLNFPERVVQCNSYSSSANSAIQQ 189

Query: 166 SSSAFHHHHESVMPAPPPRPTSMHHGAYPDLLQYAQILSSDDATFNYYTSNLFNPQ 221
           S S  + H + V               +P+L QYAQIL S DA F YY S+LFN Q
Sbjct: 190 SGSVSNSHDQQV---------------FPNLFQYAQILES-DAEFPYYASHLFNQQ 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523712|ref|XP_003530479.1| PREDICTED: ethylene-responsive transcription factor ERF113-like [Glycine max]

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/204 (52%), Positives = 131/204 (64%), Gaps = 24/204 (11%)

Query: 37  MSAMVSALTQVIGTTTTD-----ADADPSPAAVKEESSDNPLQQTQTQTQDQDQEGTRRR 91
           MS MVSAL+QV+GTT  +     +++ PS  +V ++       Q        DQE T++ 
Sbjct: 1   MSEMVSALSQVMGTTNRNPHMPQSNSFPSSTSVVKDQP-----QPYPSQPPPDQEVTKKP 55

Query: 92  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPER 151
           HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAA+AYDKAALKFKGTKAKLNFPER
Sbjct: 56  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPER 115

Query: 152 VQGTTEFV--YLDSSSSSSAFHHH------------HESVMPAPPPRPTSMHHGAYPDLL 197
           +     ++  +   SS+ + F  H              S+    PP  ++  H  +P+L 
Sbjct: 116 LHQNVPYMQQHQQGSSNRNVFPFHATSSTSSSATGSVSSLDAVAPPSLSTHDHQVFPNLY 175

Query: 198 QYAQILSSDDATFNYYTSNLFNPQ 221
           QYAQILSS D  F YYTS+LFN Q
Sbjct: 176 QYAQILSSGDEEFPYYTSHLFNQQ 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079024|gb|ADJ67443.1| ethylene response factor 14 [Actinidia deliciosa]

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 132/203 (65%), Gaps = 18/203 (8%)

Query: 83  QDQEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGT 142
           QDQ    +RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAA+AYD+AAL+FKGT
Sbjct: 26  QDQGNVGKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDEAALRFKGT 85

Query: 143 KAKLNFPERVQGTTEFVYLDSSSSSSA--FHHHHESVMPAPPPRPTSM-HHGAYPDLLQY 199
           KAKLNFPE+VQ  TE+ YL +S++       + +    P  PP P SM     YPDL QY
Sbjct: 86  KAKLNFPEKVQAKTEYAYLTASTTHGEDRISNPYVPPPPPAPPLPDSMSSQETYPDLFQY 145

Query: 200 AQILSSDDATFNYYTSNLFNPQ-SSSSSSSTPSTFSSSTTS-------------LEQQQE 245
           AQ+LSS DA F Y++S L+N     S SS+TP  +SS  ++              +QQ E
Sbjct: 146 AQLLSSSDADFPYFSSALYNQHPFVSQSSTTPLMYSSVASNPQQQQQQEQQQQQQQQQHE 205

Query: 246 MTRFSSNYE-SLSGSDFQDHSNN 267
              F S+ E S SG+D   H  N
Sbjct: 206 FLSFQSHMESSSSGADLLKHGKN 228

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.566	0.616	0.506	5.2e-33
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.529	0.543	0.513	3.7e-32
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.462	0.589	0.551	5.4e-31
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.318	0.390	0.540	1.5e-24
TAIR|locus:2176095	391	ABR1 "ABA REPRESSOR1" [Arabido	0.237	0.163	0.671	6.2e-24
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.244	0.343	0.671	2.7e-20
TAIR|locus:2116224	268	RRTF1 "redox responsive transc	0.225	0.227	0.606	3.1e-19
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.237	0.374	0.590	2e-17
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.229	0.173	0.564	3.1e-17
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.229	0.163	0.580	3.2e-17

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 81/160 (50%), Positives = 91/160 (56%)

Query:     5 HGKRPLPLEASPEEKEKEQDNN-FPAWTTH-ESDMSAMVSALTQVIGXXXXXXXXXXXXX 62
             +GKRP       E +E+E+D N FP ++   + DM  MVSALTQVIG             
Sbjct:     2 YGKRPF---GGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSI 58

Query:    63 XVKEESSDNPLXXXXXXXXXXXXEGT-RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT 121
                  S  NP             +G  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT
Sbjct:    59 DDNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT 118

Query:   122 FETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ-GTTEFVY 160
             FET            LKFKG+KAKLNFPERVQ G+    Y
Sbjct:   119 FETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYY 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/152 (51%), Positives = 89/152 (58%)

Query:     5 HGKRPLPLEASPEEKEKEQDNN-FPAWTTHES-DMSAMVSALTQVIGXXXXXXXXXXXXX 62
             +GKRP   + S E+KE + D N FP ++     DM AMVSALTQVIG             
Sbjct:     7 YGKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQP 66

Query:    63 XVKEESSDNPLXXXXXXXXXXXXEGT-RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT 121
              V  +   NP             +G  R+RHYRGVRQRPWGKWAAEIRDP+KAARVWLGT
Sbjct:    67 VVYNQQDPNP------PAPPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGT 120

Query:   122 FETXXXXXXXXXXXXLKFKGTKAKLNFPERVQ 153
             FET            LKFKG+KAKLNFPER Q
Sbjct:   121 FETAEAAALAYDNAALKFKGSKAKLNFPERAQ 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 70/127 (55%), Positives = 78/127 (61%)

Query:    89 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNF 148
             RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET            LKFKGTKAKLNF
Sbjct:    35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query:   149 PERVQGTTEFVYLDXXXXXXXXXXXXXXVMPAPPPRPTSMHHGAY-PDLLQYAQILSSD- 206
             PERVQG T    +                 P PP   T+     Y  D+LQYAQ+L+S+ 
Sbjct:    95 PERVQGPTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQDILQYAQLLTSNN 154

Query:   207 DATFNYY 213
             +   +YY
Sbjct:   155 EVDLSYY 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 47/87 (54%), Positives = 55/87 (63%)

Query:    67 ESSDNPLXXXXXXXXXXXXEGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXX 126
             +SS NP+               +RR YRGVRQRPWGKWAAEIRDP +AARVWLGTF+T  
Sbjct:    52 DSSHNPIEESMSKAFPEEAREKKRR-YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAE 110

Query:   127 XXXXXXXXXXLKFKGTKAKLNFPERVQ 153
                       L+F+G KAKLNFPE V+
Sbjct:   111 AAARAYDEAALRFRGNKAKLNFPEDVR 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2176095 ABR1 "ABA REPRESSOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 43/64 (67%), Positives = 47/64 (73%)

Query:    90 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFP 149
             RR YRGVRQRPWGKWAAEIRDP KAARVWLGTF+             L+F+G KAKLNFP
Sbjct:   182 RRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP 241

Query:   150 ERVQ 153
             E V+
Sbjct:   242 ENVK 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 45/67 (67%), Positives = 49/67 (73%)

Query:    89 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNF 148
             R + YRGVRQRPWGKWAAEIRDP KA RVWLGTFET            L+F+G+KAKLNF
Sbjct:    57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116

Query:   149 PERVQGT 155
             PE V GT
Sbjct:   117 PENV-GT 122

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2116224 RRTF1 "redox responsive transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 37/61 (60%), Positives = 44/61 (72%)

Query:    89 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNF 148
             ++  YRGVRQRPWGK+AAEIRDPK+A RVWLGTFET            + F+G +AKLNF
Sbjct:   132 KKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191

Query:   149 P 149
             P
Sbjct:   192 P 192

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 39/66 (59%), Positives = 44/66 (66%)

Query:    86 EGTRRRH--YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTK 143
             +G R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T            +K +G K
Sbjct:    41 DGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRK 100

Query:   144 AKLNFP 149
             AKLNFP
Sbjct:   101 AKLNFP 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 35/62 (56%), Positives = 45/62 (72%)

Query:    89 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNF 148
             R+  YRG+RQRPWGKWAAEIRDP++ AR+WLGTF+T             + +G+KAK+NF
Sbjct:   121 RKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180

Query:   149 PE 150
             PE
Sbjct:   181 PE 182

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 36/62 (58%), Positives = 44/62 (70%)

Query:    89 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNF 148
             R+  YRG+RQRPWGKWAAEIRDP+K +R WLGTF+T             + +GTKAK+NF
Sbjct:   124 RKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183

Query:   149 PE 150
             PE
Sbjct:   184 PE 185

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	270
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-33
pfam00847	53	pfam00847, AP2, AP2 domain	2e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  122 bits (309), Expect = 4e-36
 Identities = 44/59 (74%), Positives = 49/59 (83%)

Query: 92  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPE 150
            YRGVRQRPWGKW AEIRDP K  RVWLGTF+TAE+AA AYD+AA KF+G  A+LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  115 bits (290), Expect = 3e-33
 Identities = 42/59 (71%), Positives = 49/59 (83%)

Query: 92  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPE 150
            YRGVRQRPWGKW AEIRDP    R+WLGTF+TAE+AA AYD+AALK +G+ A LNFP+
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 92  HYRGVRQRP-WGKWAAEIRDPK--KAARVWLGTFETAEDAAMAYDKAALKFKG 141
            Y+GVR    WG+W AEIRDP   K  R  LGTF T E+AA A   A LK +G
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.4
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.1
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	84.37

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=5.9e-21  Score=138.65  Aligned_cols=61  Identities=69%  Similarity=1.277  Sum_probs=57.3

Q ss_pred             CceeeEEeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 043184           91 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPER  151 (270)
Q Consensus        91 S~YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~l~G~~A~lNFP~~  151 (270)
                      |+||||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998888899999999986677999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=4.8e-20  Score=135.60  Aligned_cols=62  Identities=71%  Similarity=1.305  Sum_probs=57.9

Q ss_pred             ceeeEEeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCcC
Q 043184           92 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERVQ  153 (270)
Q Consensus        92 ~YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~l~G~~A~lNFP~~~~  153 (270)
                      +||||+++++|||+|+|+++.+++++|||+|+|+||||+|||.|+++++|.++++|||++.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999888899999999997778899999999999999999999999999999999998654

>PHA00280 putative NHN endonuclease

Probab=99.40  E-value=5.9e-13  Score=110.78  Aligned_cols=60  Identities=13%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             ccCCCCCCCceeeE-EeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 043184           83 QDQEGTRRRHYRGV-RQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFKGTKAK  145 (270)
Q Consensus        83 ~~~~~~~tS~YRGV-r~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~l~G~~A~  145 (270)
                      +...+.++|+|||| +.+..|||+|+|++.+|  +++||.|+++|+|+.||+ ++++++|++|.
T Consensus        59 ~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK--~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         59 MKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK--QHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             cCCCCCCCCCCCeeEEecCCCeEEEEEEECCE--EEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            34456789999999 56777999999997655  999999999999999997 78899999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.10  E-value=1.5e-10  Score=81.99  Aligned_cols=52  Identities=33%  Similarity=0.505  Sum_probs=44.4

Q ss_pred             CceeeEE-eCCCCcEEEEEeCCC---CCceEecCCCCCHHHHHHHHHHHHHHhcCC
Q 043184           91 RHYRGVR-QRPWGKWAAEIRDPK---KAARVWLGTFETAEDAAMAYDKAALKFKGT  142 (270)
Q Consensus        91 S~YRGVr-~r~~GKW~A~I~~~~---kgkri~LGtFdT~EEAArAYD~AA~~l~G~  142 (270)
                      |+|+||+ .+..++|+|+|++..   ++++++||.|++++||++|++.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899995 566799999999831   137999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=84.37  E-value=2.8  Score=28.86  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             cEEEEEe--C--CCCCceEecCCCCCHHHHHHHHHHHHHHh
Q 043184          103 KWAAEIR--D--PKKAARVWLGTFETAEDAAMAYDKAALKF  139 (270)
Q Consensus       103 KW~A~I~--~--~~kgkri~LGtFdT~EEAArAYD~AA~~l  139 (270)
                      +|..+|.  +  .++.++++-+-|.|..||..+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  3  35567889999999999999988876665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-15
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-15

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 91  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFP 149
           +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET             + +G++A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 150 ERV 152
            RV
Sbjct: 64  LRV 66

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 91  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETXXXXXXXXXXXXLKFKGTKAKLNFP 149
           +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET             + +G++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 150 ERV 152
            RV
Sbjct: 61  LRV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-41

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  135 bits (343), Expect = 2e-41
 Identities = 48/63 (76%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 91  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFP 149
           +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFETAEDAA+AYD+AA + +G++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 150 ERV 152
            RV
Sbjct: 61  LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.12
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.13

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=3.1e-25  Score=163.46  Aligned_cols=62  Identities=77%  Similarity=1.345  Sum_probs=58.0

Q ss_pred             CceeeEEeCCCCcEEEEEeCCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 043184           91 RHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERV  152 (270)
Q Consensus        91 S~YRGVr~r~~GKW~A~I~~~~k-gkri~LGtFdT~EEAArAYD~AA~~l~G~~A~lNFP~~~  152 (270)
                      .+||||++++||||+|+|+++.+ |++||||+|+|+||||+|||.|+++++|.++++|||+++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            37999988889999999999864 789999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.12  E-value=0.28  Score=37.44  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             CCCCceeeE-EeCCCCcEEEEEeCCCC
Q 043184           88 TRRRHYRGV-RQRPWGKWAAEIRDPKK  113 (270)
Q Consensus        88 ~~tS~YRGV-r~r~~GKW~A~I~~~~k  113 (270)
                      ..+|+|+|| |.+..+.|.|.-.+.++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~   29 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGAS   29 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCe
Confidence            468999999 77788999999997743

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.13  E-value=0.29  Score=40.77  Aligned_cols=38  Identities=5%  Similarity=-0.129  Sum_probs=29.4

Q ss_pred             eeeEEeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHH
Q 043184           93 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYD  133 (270)
Q Consensus        93 YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD  133 (270)
                      ++||.....++|.+.|... +  .++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence            5677333346799999876 4  677999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  120 bits (304), Expect = 4e-36
 Identities = 48/63 (76%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 91  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFP 149
           +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFETAEDAA+AYD+AA + +G++A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 150 ERV 152
            RV
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2.2e-25  Score=163.25  Aligned_cols=62  Identities=76%  Similarity=1.332  Sum_probs=57.0

Q ss_pred             CceeeEEeCCCCcEEEEEeCCC-CCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 043184           91 RHYRGVRQRPWGKWAAEIRDPK-KAARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERV  152 (270)
Q Consensus        91 S~YRGVr~r~~GKW~A~I~~~~-kgkri~LGtFdT~EEAArAYD~AA~~l~G~~A~lNFP~~~  152 (270)
                      .+||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+||++++|.++.+|||.++
T Consensus         1 ~~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            3699998888999999999864 5689999999999999999999999999999999999864