Citrus Sinensis ID: 043264
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | 2.2.26 [Sep-21-2011] | |||||||
| Q93Y91 | 506 | Sugar transport protein 5 | yes | no | 0.958 | 0.824 | 0.419 | 4e-91 | |
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.956 | 0.815 | 0.391 | 3e-82 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.949 | 0.803 | 0.375 | 1e-81 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.956 | 0.795 | 0.374 | 6e-80 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.956 | 0.796 | 0.369 | 2e-79 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.963 | 0.815 | 0.360 | 4e-78 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.940 | 0.791 | 0.360 | 2e-76 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.960 | 0.813 | 0.358 | 2e-76 | |
| O65413 | 508 | Sugar transport protein 1 | no | no | 0.951 | 0.814 | 0.369 | 2e-76 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.949 | 0.805 | 0.360 | 2e-75 |
| >sp|Q93Y91|STP5_ARATH Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 335 bits (859), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 180/429 (41%), Positives = 263/429 (61%), Gaps = 12/429 (2%)
Query: 13 NEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG 72
N ++T +++ CI AS GL++GYDIGI+GG+T + FL+KFFPSVL+ AK +
Sbjct: 15 NIDAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKKASEAKT-NV 73
Query: 73 FCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNM 132
+C++ S LTA+ SSLY+AG+ ++L+A RLT + GR+ +I+GG +L G ++ LA N+
Sbjct: 74 YCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANI 133
Query: 133 GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192
ML GR+ G G+GF NQ AP+YL E+AP +WRGA GF F GV A+ INY
Sbjct: 134 AMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYGTD 193
Query: 193 SSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTK--FD 250
S N WRI++ ++ PA +MT+ FI DTPSSL+ RGK +A SL ++RG + D
Sbjct: 194 SHRN--GWRISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDEAHTSLLKLRGVENIAD 251
Query: 251 SENELKYLIKYNE-DMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309
E EL L++ ++ + +E K +L+R+YRPHL+ A+ +P FQ LTG +NA +
Sbjct: 252 VETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCFQQLTGITVNAFYAPV 311
Query: 310 IVTSLGIRLKDVFPILIIQSTIFFV---CLLLTGYLIDRVGRRIMLIVGGCQIFICQVIL 366
+ S+G P LI + FV LLL+ +IDR GRR + I GG + +CQ+ +
Sbjct: 312 LFRSVGFGSG---PALIATFILGFVNLGSLLLSTMVIDRFGRRFLFIAGGILMLLCQIAV 368
Query: 367 AILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQ 426
A+L+A + G K A ++L C G SWGPL W++ EI P+++R AGQ
Sbjct: 369 AVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGWSWGPLSWLVPSEIFPLKIRPAGQ 428
Query: 427 GLSTAISFA 435
LS A++FA
Sbjct: 429 SLSVAVNFA 437
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/421 (39%), Positives = 252/421 (59%), Gaps = 5/421 (1%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
GR+T + + C+ A G+++GYDIG++GG+T + FLKKFFP V R K + +C
Sbjct: 15 NGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYC 74
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM 134
F S LT++ SSLY+AG+ ++ A +T + GRK ++++GG ++L +L AVN+ M
Sbjct: 75 KFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYM 134
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L GRV G+G+GF NQ P+YL EMAP ++RGAI GFQ G A+ INY
Sbjct: 135 LIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKI 194
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALK-SLNQVRGTKFDSEN 253
WRI+++++ PA ++T A F+P+TP+SLIQR + K L +VRGT D +
Sbjct: 195 EGGWGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTT-DVQA 253
Query: 254 ELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313
EL LIK + R + P+K ++ RKYRP L+ A+A+P FQ +TG N+ A ++ +
Sbjct: 254 ELDDLIKASIISRTI-QHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRT 312
Query: 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373
+G+ I+ + ++ ++D++GRR + I GG Q+F+ Q+++ +MA+E
Sbjct: 313 IGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAE 372
Query: 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
HG K A++ LIL C G SWGPL W++ EI P+E+RSAGQ + A+S
Sbjct: 373 LGDHGG--IGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVS 430
Query: 434 F 434
F
Sbjct: 431 F 431
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/416 (37%), Positives = 249/416 (59%), Gaps = 3/416 (0%)
Query: 18 LTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFY 77
+T +++ CI A GL++GYD+GI+GG+T E FL KFFP V K AK +C F
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 78 SWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFL 137
+ L + SSLY+A + ++ MA +T GRK ++ IGG+ +LIG +A AVN+ ML +
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 138 GRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNF 197
GR+ G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ INY S +
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGT-SKMAQ 199
Query: 198 KRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKY 257
WR+++ ++ PA +M I +F +PDTP+S+++RGK ++A + L ++RG + ++E +
Sbjct: 200 HGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGAD-NVDHEFQD 258
Query: 258 LIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIR 317
LI E + E P+K ++E KYRP L+F A+P FQ +TG N+ ++ +LG
Sbjct: 259 LIDAVEAAK-KVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFG 317
Query: 318 LKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSH 377
+I + + ++ Y +DR GRR++ + GG Q+FICQ+++ + + +
Sbjct: 318 DDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTS 377
Query: 378 GTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
GT + +A L C G A SWGPL W++ EI P+E+R AGQ ++ +++
Sbjct: 378 GTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 433
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 251/419 (59%), Gaps = 3/419 (0%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G LT + + C+ A GL++GYDIGI+GG+T +SFLKKFFPSV R +K + + +C
Sbjct: 19 GNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQ 78
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+ S LT + SSLY+A + ++L+A +T GRK +++ GG+++ G ++ A + ML
Sbjct: 79 YDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWML 138
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
LGR+ G GIGF NQ+ P+YL EMAP K+RGA+ GFQ+ G+ A+ +NYF
Sbjct: 139 ILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIK 198
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
WR+++ + PA ++T+ + +PDTP+S+I+RG+ ++A L +VRG + D + E
Sbjct: 199 GGWGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEARAHLKRVRGVE-DVDEEF 257
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
L+ +ED + E P++ LL+RKYRPHL AIA+P FQ LTG N+ ++ ++G
Sbjct: 258 TDLVHASEDSK-KVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIG 316
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
+I + +++ Y +D+ GRR + + GG Q+ ICQ I+A + ++
Sbjct: 317 FGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFG 376
Query: 376 SHGTS-IFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
G + A V ++ C G A SWGPL W++ EI P+E+RSA Q ++ +++
Sbjct: 377 VDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVN 435
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Ricinus communis (taxid: 3988) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 247/419 (58%), Gaps = 3/419 (0%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G+LT +L C+ A GL++GYDIGI+GG+T SFLK+FFPSV R Q+ + +C
Sbjct: 17 GKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQ 76
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+ S LT + SSLY+A + S+L+A +T GR+ +++ GGI++ G ++ A ++ ML
Sbjct: 77 YDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWML 136
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
+GR+ G GIGF NQ P+YL EMAP K+RGA+ GFQ+ G+ A +NYF
Sbjct: 137 IVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIK 196
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
WR+++ + PA ++TI + +PDTP+S+I+RG+ ++A L ++RG D E
Sbjct: 197 GGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVD-DVSQEF 255
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
L+ +++ + + E P++ LL RKYRPHL A+ +P FQ LTG N+ ++ ++G
Sbjct: 256 DDLVAASKESQ-SIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIG 314
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
++ ++ L++ Y +DR GRR + + GG Q+ ICQ ++A + ++
Sbjct: 315 FTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFG 374
Query: 376 SHGT-SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
GT K A V + C G A SWGPL W++ EI P+E+RSA Q ++ +++
Sbjct: 375 VDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVN 433
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Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 152/422 (36%), Positives = 252/422 (59%), Gaps = 3/422 (0%)
Query: 13 NEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVD- 71
+ +GR+T ++I CI A GL++GYDIGI+GG+ E FL KFFP VLR +N + +
Sbjct: 15 DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRET 74
Query: 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN 131
+C + + LT + SSLY+A +F++ +A +T GRK +++IG + +L G L+ LA+N
Sbjct: 75 EYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAIN 134
Query: 132 MGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFI 191
+ ML +GR+F G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ +NY
Sbjct: 135 LEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVT 194
Query: 192 MSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDS 251
N WR+++ ++G PA +M + FF+PDTP+S+++RG ++A + L ++RGT +
Sbjct: 195 PKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGT-MEV 253
Query: 252 ENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV 311
E+E L E + + P+ +++ +YRP L F +P FQ LTG N+ ++
Sbjct: 254 EHEFNELCNACEAAK-KVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLF 312
Query: 312 TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371
++G +I + + +++ Y +D+ GRR + + GG Q+ + Q+ + ++
Sbjct: 313 KTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIG 372
Query: 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431
+ +G S A + L L C G A SWGPL W++ EI P+E+RSAGQ L+ +
Sbjct: 373 WKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVS 432
Query: 432 IS 433
++
Sbjct: 433 VN 434
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/413 (36%), Positives = 244/413 (59%), Gaps = 4/413 (0%)
Query: 22 MLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKL 81
+++ CI A GL++GYD+GI+GG+T E FL KFFP V + A+ +C F + L
Sbjct: 25 VIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLL 84
Query: 82 TAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVF 141
+ SSLY+A + S+ +A +T GRK ++ +GG+ +LIG +A A N+ ML +GR+
Sbjct: 85 QLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLL 144
Query: 142 TGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWR 201
G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ INY S + WR
Sbjct: 145 LGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGT-SQMAKNGWR 203
Query: 202 IAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKY 261
+++ ++ PA +M I +F +PDTP+S+++RGK +QA + L ++RG + + E + L
Sbjct: 204 VSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGAD-NVDEEFQDLCDA 262
Query: 262 NEDMRIASETPYKMLLER-KYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKD 320
E + + P+K + ++ KYRP L+F A+P FQ +TG N+ ++ +LG
Sbjct: 263 CEAAK-KVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDA 321
Query: 321 VFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTS 380
+I + V L++ Y +DR GRRI+ + GG Q+ + Q+++ L+ + + G+
Sbjct: 322 SLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSG 381
Query: 381 IFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ +A L C G A SWGPL W++ EI P+E+R AGQ ++ +++
Sbjct: 382 TLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 434
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 242/421 (57%), Gaps = 3/421 (0%)
Query: 13 NEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG 72
N +LT + + C A GL++GYD+GI+GG+T E FL++FFP V + K+A +
Sbjct: 14 NYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NE 72
Query: 73 FCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNM 132
+C F S LT + SSLY+A + S+L A +T GRK ++ +GG + IG + + A N+
Sbjct: 73 YCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNI 132
Query: 133 GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192
ML +GR+ G G+GF NQ+ P+YL EMAP RGA GFQ+ G+ A+ INYF
Sbjct: 133 AMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTA 192
Query: 193 SSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252
WRI++ ++ PA ++ I A +PDTP+SLI+RG ++A + L +RGT + +
Sbjct: 193 QMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRGTN-EVD 251
Query: 253 NELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT 312
E + LI +E+ + + P+K ++ +YRP L+ +P FQ LTG N+ ++
Sbjct: 252 EEFQDLIDASEESK-QVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQ 310
Query: 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMAS 372
+LG K ++ I +C ++ + +DR GRRI+ + GG Q+ + Q+ + ++
Sbjct: 311 TLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGV 370
Query: 373 ESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432
+ GT K A + + L C G A SWGPL W++ EI P+E+RSA Q ++ ++
Sbjct: 371 KFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSV 430
Query: 433 S 433
+
Sbjct: 431 N 431
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 253/419 (60%), Gaps = 5/419 (1%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G+LT + + CI A GL++GYDIGI+GG+T +SF +KFFPSV QK + +C
Sbjct: 17 GKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCR 76
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
F S LT + SSLY+A + S+L+A +T GRK ++++GG+++ G L+ A + ML
Sbjct: 77 FDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWML 136
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
+GR+ G GIGF NQ+ P+YL EMAP K+RGA+ GFQ+ G+ A+ +N+F S +
Sbjct: 137 IVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNFF-FSKI 195
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
++ WR+++ + PA ++T+ + +PDTP+S+I+RG+ + A L ++RG D ++E+
Sbjct: 196 SWG-WRLSLGGAVVPALIITVGSLILPDTPNSMIERGQFRLAEAKLRKIRGVD-DIDDEI 253
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
LI +E ++ E P++ LL+RKYRPHL AI +P FQ LTG N+ ++ ++G
Sbjct: 254 NDLIIASEASKLV-EHPWRNLLQRKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIG 312
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
++ + +++ Y +D+ GRR + + GG Q+ I QV +A + ++
Sbjct: 313 FGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFG 372
Query: 376 SHGTS-IFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
GT + K A V ++ C A SWGPL W++ EI P+E+RSA Q ++ +++
Sbjct: 373 VDGTPGVLPKWYAIVVVLFICIYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVN 431
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 255/419 (60%), Gaps = 6/419 (1%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
+G++T ++I C+ A G ++GYDIGI+GG+T + FL++FF +V +K A + +C
Sbjct: 20 QGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESN-YC 78
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM 134
+ + L A+ SSLY+AG+ S L+A +T + GR+ +++ GGI +LIG L+A AVN+ M
Sbjct: 79 KYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAM 138
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L GR+ G+GIGF NQ P+YL E+APT RG + FQ+ G+ A+ +NY
Sbjct: 139 LLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYG-TQQ 197
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
L WR+++ ++ FPA LMT+ +F+P+TP+SL++RG ++ + L ++RGT+ + E
Sbjct: 198 LKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTE-NVNAE 256
Query: 255 LKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314
L+ ++ +E + + + P++ +L++++RP L+ AI +P FQ LTG N ++ ++
Sbjct: 257 LQDMVDASE-LANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTM 315
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G + + + ++ L+DR+GRR +LI GG Q+ ICQVI+A+++ +
Sbjct: 316 GFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKF 375
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ SK + + +I C V SWGPL W + EI P+E RSAGQ ++ A++
Sbjct: 376 GDNQE--LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVN 432
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| 356515798 | 509 | PREDICTED: sugar transport protein 5-lik | 0.956 | 0.817 | 0.431 | 1e-97 | |
| 363808280 | 509 | uncharacterized protein LOC100817692 [Gl | 0.956 | 0.817 | 0.427 | 1e-97 | |
| 225459314 | 500 | PREDICTED: sugar transport protein 5 [Vi | 0.970 | 0.844 | 0.434 | 2e-97 | |
| 56759682 | 500 | hexose transporter HT2 [Vitis vinifera] | 0.970 | 0.844 | 0.434 | 2e-97 | |
| 147858116 | 500 | hypothetical protein VITISV_026530 [Viti | 0.970 | 0.844 | 0.432 | 1e-96 | |
| 356508100 | 508 | PREDICTED: sugar transport protein 5-lik | 0.956 | 0.818 | 0.429 | 1e-96 | |
| 57283532 | 502 | monosaccharide transporter [Populus trem | 0.960 | 0.832 | 0.448 | 3e-96 | |
| 224063221 | 502 | predicted protein [Populus trichocarpa] | 0.960 | 0.832 | 0.446 | 4e-95 | |
| 30349813 | 512 | putative monosaccharide-H+ symporter [Me | 0.965 | 0.820 | 0.408 | 1e-93 | |
| 297846454 | 506 | hypothetical protein ARALYDRAFT_473605 [ | 0.960 | 0.826 | 0.426 | 1e-91 |
| >gi|356515798|ref|XP_003526585.1| PREDICTED: sugar transport protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/419 (43%), Positives = 273/419 (65%), Gaps = 3/419 (0%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G++T ++I CI AS GL++GYDIGI+GG+T FL+KFFP++LR + +V + +C+
Sbjct: 19 GKITLSVIITCIVAASGGLLFGYDIGISGGVTTMVPFLEKFFPAILRKAASTEV-NMYCV 77
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+ S LT + SSLY+AG+ S+L A R+T GR+ +I+GG+I+++G +L+ A N+ ML
Sbjct: 78 YDSQVLTLFTSSLYLAGLVSSLAASRVTAVLGRRNTIILGGVIFVVGGALNGGAENIAML 137
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
LGR+ G G+GF NQ AP+YL E+AP KWRGA TGFQ F GV A IN+ ++
Sbjct: 138 ILGRILLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLSLGVLVAGCINF--GTAK 195
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
WR+++ ++ PA +MTI AF I DTP+SL++RGK++QA K+L + RG+ D E EL
Sbjct: 196 KTWGWRVSLGLAVVPAAVMTIGAFLITDTPNSLVERGKIEQARKALRKARGSSIDVEPEL 255
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
+ LIK+++ + + P+K + ER+YRPHL+ AIA+P FQ +TG N+ A + S+G
Sbjct: 256 EELIKWSQIAKSVEQEPFKTIFERQYRPHLVMAIAIPFFQQMTGINIVAFYAPNLFQSVG 315
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
+ II + V LL++ ++DR GRR + + GG +FICQ+ ++IL+A +
Sbjct: 316 LGHDAALLSAIILGAVNLVSLLVSTAIVDRFGRRFLFVTGGICMFICQIAVSILLAVVTG 375
Query: 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
HGT SK SA V L+L C G SWGPL W++ EI P+++R+ GQ ++ + F
Sbjct: 376 VHGTKDMSKGSAIVVLVLLCCYSAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVGVQF 434
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363808280|ref|NP_001241985.1| uncharacterized protein LOC100817692 [Glycine max] gi|255644536|gb|ACU22771.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 274/419 (65%), Gaps = 3/419 (0%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G++T ++I CI AS+GL++GYDIGI+GG+T FL+KFFP +LR + A V+ +C+
Sbjct: 19 GKITLSVIITCIVAASSGLLFGYDIGISGGVTTMVPFLEKFFPHILR-KAAATEVNMYCV 77
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+ S LT + SSLY+AG+ S+L A R+T + GR+ +I+G +I+++G +L+ A N+ ML
Sbjct: 78 YDSQVLTLFTSSLYLAGLVSSLAASRVTAALGRRNTIILGSVIFVVGGALNGGAENIAML 137
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
LGR+ G G+GF NQ AP+YL E+AP KWRGA TGFQ F GV A IN+ ++
Sbjct: 138 ILGRILLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLSLGVLVARCINF--GTAK 195
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
WR+++ ++ PA +MTI AF I DTP+SL++RGK++QA K+L + RG+ D E EL
Sbjct: 196 KTWGWRVSLGLAVVPAAVMTIGAFLITDTPNSLVERGKIEQARKALRKARGSSIDVEPEL 255
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
+ LIK+++ + + P+K + ER+YRPHL AIA+P FQ +TG N+ A + S+G
Sbjct: 256 EELIKWSQIAKSVEQEPFKTIFERQYRPHLAMAIAIPFFQQMTGINIVAFYSPNLFQSVG 315
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
+ +I + V LL++ ++DR+GRR + I GG + +CQ+ +++L+A+ +
Sbjct: 316 LGHDAALLSAVILGAVNLVSLLVSTAIVDRLGRRFLFITGGICMLVCQIAVSVLLAAVTG 375
Query: 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
HGT SK SA V L+L CF G SWGPL W++ EI P+++R+ GQ ++ + F
Sbjct: 376 VHGTKDVSKGSAIVVLVLLCFYSAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVGVQF 434
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459314|ref|XP_002285793.1| PREDICTED: sugar transport protein 5 [Vitis vinifera] gi|302141952|emb|CBI19155.3| unnamed protein product [Vitis vinifera] gi|310877790|gb|ADP37126.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/428 (43%), Positives = 275/428 (64%), Gaps = 6/428 (1%)
Query: 11 DLNEK---GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNA 67
D N + G++T ++I CI AS GL++GYDIGI+GG+T + FLKKFFP VLR +A
Sbjct: 9 DDNSRAFSGKVTASVVITCIVAASGGLIFGYDIGISGGVTTMQPFLKKFFPVVLRKAADA 68
Query: 68 KVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA 127
K + +C++ S LTA+ SSLYIAG+ ++L+A RLT + GR+ +IIGG+ +LIG +L+
Sbjct: 69 KT-NIYCVYDSHVLTAFTSSLYIAGLAASLVASRLTRAVGRRNTMIIGGLTFLIGAALNG 127
Query: 128 LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI 187
A N+ ML LGR+ G G+GF NQ PIYL EMAP KWRGA GT FQ F GV A+ +
Sbjct: 128 GAENVAMLILGRILLGFGVGFTNQATPIYLSEMAPPKWRGAFGTSFQFFIGIGVVVANCL 187
Query: 188 NYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT 247
NY + +++ WR+++ ++ P+ +MT+ A I DTPSSL++RGKV QA SL + RG
Sbjct: 188 NYG-TAKISWG-WRLSLGLAIVPSVIMTVGALLISDTPSSLVERGKVAQARDSLRKARGK 245
Query: 248 KFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307
D E EL L+K +E ++ A+E P+ + ER+YRPHL+ A A+P FQ LTG N+ A
Sbjct: 246 DIDIEPELAELVKTSEAVKAANEEPFVTIFERQYRPHLVMAFAIPFFQQLTGINIIAFYA 305
Query: 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILA 367
++ S+G II + + ++++ +++DR GRRI+ + GG Q+ I QV +A
Sbjct: 306 PVLFQSVGFGSDSALIASIILGCVNLLSIIVSTFIVDRYGRRILFLEGGTQMIIGQVAVA 365
Query: 368 ILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQG 427
++A + GT + A + L+L C G SWGPL W++ EI P+++R+ GQ
Sbjct: 366 CVLAVTTGVSGTKDIPRGYAVLVLVLMCIYAAGFGWSWGPLSWLIPSEIFPMKIRTTGQA 425
Query: 428 LSTAISFA 435
+S A++FA
Sbjct: 426 ISVAVNFA 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|56759682|gb|AAT77693.2| hexose transporter HT2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/428 (43%), Positives = 275/428 (64%), Gaps = 6/428 (1%)
Query: 11 DLNEK---GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNA 67
D N + G++T ++I CI AS GL++GYDIGI+GG+T + FLKKFFP VLR +A
Sbjct: 9 DDNSRAFSGKVTASVVITCIVAASGGLIFGYDIGISGGVTTMQPFLKKFFPVVLRKAADA 68
Query: 68 KVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA 127
K + +C++ S LTA+ SSLYIAG+ ++L+A RLT + GR+ +IIGG+ +LIG +L+
Sbjct: 69 KT-NIYCVYDSHVLTAFTSSLYIAGLAASLVASRLTRAVGRRNTMIIGGLTFLIGAALNG 127
Query: 128 LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI 187
A N+ ML LGR+ G G+GF NQ PIYL EMAP KWRGA GT FQ F GV A+ +
Sbjct: 128 GAENVAMLILGRILLGFGVGFTNQATPIYLSEMAPPKWRGAFGTSFQFFIGIGVVVANCL 187
Query: 188 NYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT 247
NY + +++ WR+++ ++ P+ +MT+ A I DTPSSL++RGKV QA SL + RG
Sbjct: 188 NYG-TAKISWG-WRLSLGLAIVPSVIMTVGALLISDTPSSLVERGKVAQARDSLRKARGK 245
Query: 248 KFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307
D E EL L+K +E ++ A+E P+ + ER+YRPHL+ A A+P FQ LTG N+ A
Sbjct: 246 DIDIEPELAELVKTSEAVKAANEEPFVTIFERQYRPHLVMAFAIPFFQQLTGINIIAFYA 305
Query: 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILA 367
++ S+G II + + ++++ +++DR GRRI+ + GG Q+ I QV +A
Sbjct: 306 PVLFQSVGFGSDSALIASIILGCVNLLSIIVSTFIVDRYGRRILFLEGGTQMIIGQVAVA 365
Query: 368 ILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQG 427
++A + GT + A + L+L C G SWGPL W++ EI P+++R+ GQ
Sbjct: 366 CVLAVTTGVSGTKDIPRGYAVLVLVLMCIYAAGFGWSWGPLSWLIPSEIFPMKIRTTGQA 425
Query: 428 LSTAISFA 435
+S A++FA
Sbjct: 426 ISVAVNFA 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858116|emb|CAN79246.1| hypothetical protein VITISV_026530 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 274/428 (64%), Gaps = 6/428 (1%)
Query: 11 DLNEK---GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNA 67
D N + G++T ++I CI AS GL++GYDIGI+GG+T + FLKKFFP VLR +A
Sbjct: 9 DDNSRAFSGKVTASVVITCIVAASGGLIFGYDIGISGGVTTMQPFLKKFFPVVLRKAADA 68
Query: 68 KVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA 127
K + +C++ S LTA+ SSLYIAG+ ++L+A RLT + GR+ +IIGG+ +LIG +L+
Sbjct: 69 KT-NIYCVYDSHVLTAFTSSLYIAGLAASLVASRLTRAVGRRNTMIIGGLTFLIGAALNG 127
Query: 128 LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI 187
A N+ ML LGR+ G G+GF NQ PIYL EMAP KWRGA GT FQ F GV A+ +
Sbjct: 128 GAENVAMLILGRILLGFGVGFTNQATPIYLSEMAPPKWRGAFGTSFQFFIGIGVVVANCL 187
Query: 188 NYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT 247
NY + +++ WR+++ ++ P+ +MT+ A I DTPSSL++RGKV QA SL + RG
Sbjct: 188 NYG-TAKISWG-WRLSLGLAIVPSVIMTVGALLISDTPSSLVERGKVAQARDSLRKARGK 245
Query: 248 KFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307
D E EL L+K + ++ A+E P+ + ER+YRPHL+ A A+P FQ LTG N+ A
Sbjct: 246 DIDIEPELAELVKTSXAVKAANEEPFVTIFERQYRPHLVMAFAIPFFQQLTGINIIAFYA 305
Query: 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILA 367
++ S+G II + + ++++ +++DR GRRI+ + GG Q+ I QV +A
Sbjct: 306 PVLFQSVGFGSDSALIASIILGCVNLLSIIVSTFIVDRYGRRILFLEGGTQMIIGQVAVA 365
Query: 368 ILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQG 427
++A + GT + A + L+L C G SWGPL W++ EI P+++R+ GQ
Sbjct: 366 CVLAVTTGVSGTKDIPRGYAVLVLVLMCIYAAGFGWSWGPLSWLIPSEIFPMKIRTTGQA 425
Query: 428 LSTAISFA 435
+S A++FA
Sbjct: 426 ISVAVNFA 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508100|ref|XP_003522798.1| PREDICTED: sugar transport protein 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/419 (42%), Positives = 271/419 (64%), Gaps = 3/419 (0%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G++T ++I CI AS+GL++GYD+GI+GG+T FL+KFFP +LR +V + +C+
Sbjct: 19 GKITLSVIITCIVAASSGLLFGYDLGISGGVTTMVPFLEKFFPDILRKVAGTEV-NMYCV 77
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+ S LT + SSLY+AG+ S+L A R+T + GR+ ++IGG+ +LIG +L+ A N+GML
Sbjct: 78 YDSQVLTLFTSSLYLAGLVSSLAASRVTAAWGRRNTILIGGVTFLIGGALNGGAENIGML 137
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
LGRV G G+GF NQ AP+YL E+AP KWRGA TGFQ F G A IN+ ++
Sbjct: 138 ILGRVLLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLGVGALIAGCINF--ATAK 195
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
+ WR+++ ++ PA++MTI A I DTPSSL++RGK++QA K+L + RG+ D E EL
Sbjct: 196 HTWGWRVSLGLAVVPASVMTIGALLITDTPSSLVERGKIEQARKALRKARGSSIDVEPEL 255
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
+ LIK+++ + + P+K + ER+YRPHL+ AIA+P FQ +TG N+ A I S+G
Sbjct: 256 EELIKWSQIAKSMKQEPFKTIFERQYRPHLVMAIAIPFFQQMTGINIVAFYAPNIFQSVG 315
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
+ II + V LL++ ++DR GRR + + GG + +CQ+ ++IL+A +
Sbjct: 316 LGHDAALLSAIILGAVNLVSLLVSTAIVDRFGRRFLFVTGGICMLVCQIAVSILLAVVTG 375
Query: 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
HGT S SA V L+L C G SWGPL W++ EI P+++R+ GQ ++ + F
Sbjct: 376 VHGTKDMSNGSAIVVLVLLCCYTAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVGVQF 434
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|57283532|emb|CAG27606.1| monosaccharide transporter [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 189/421 (44%), Positives = 269/421 (63%), Gaps = 3/421 (0%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
G++T P++I CI AS+GL++GYDIGI+GG+T FL KFFP V R AK + +C
Sbjct: 16 NGKITVPVVITCIVAASSGLIFGYDIGISGGVTTMAPFLIKFFPEVFRKASEAKT-NMYC 74
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM 134
F S LTA+ SSLYIAG+ S+L+AGRLT + GRK ++IGG +L G +++ A N+ M
Sbjct: 75 QFDSQVLTAFTSSLYIAGLASSLVAGRLTAAVGRKNTMVIGGCTFLAGAAINGGAANIAM 134
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L LGR+ G G+GF NQ P+YL E+AP KWRGA TGFQ F GV A+ IN F M+
Sbjct: 135 LLLGRILLGFGVGFTNQATPVYLSEVAPPKWRGAFSTGFQFFIGVGVVAANCIN-FGMAK 193
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
++ WR ++ ++ PA +MT A FI DTPSSL++RGK++QA SL +VRG + + E
Sbjct: 194 HSWG-WRFSLGLAVVPAAIMTTGALFISDTPSSLVERGKIEQARHSLTKVRGINSNVDAE 252
Query: 255 LKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314
L L+K+NE + A + P+ +LER+YRPHL+ AIA+P FQ LTG N+ A +I S+
Sbjct: 253 LADLLKFNEMAKDAKKEPFLTILERQYRPHLVMAIAIPFFQQLTGINIIAFYAPVIFQSV 312
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G I+ + +L++ ++DR GRR + I+GG Q+FICQV + I++A +
Sbjct: 313 GFGSDSALIAAIVLGLVNLGSILVSTGMVDRHGRRFLFIIGGIQMFICQVAVTIVLAVTT 372
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
GT SK + L+ C G SWGPL W++ EI P+++RS GQ ++ A++F
Sbjct: 373 GISGTKHISKGHGVLLLVFMCIYAAGFGWSWGPLSWLVPSEIFPMKIRSTGQSITVAVNF 432
Query: 435 A 435
A
Sbjct: 433 A 433
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063221|ref|XP_002301048.1| predicted protein [Populus trichocarpa] gi|222842774|gb|EEE80321.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 269/421 (63%), Gaps = 3/421 (0%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
G++T P++I CI AS+GL++GYDIGI+GG+T FL KFFP V R K + +C
Sbjct: 16 NGKITVPVVITCIVAASSGLIFGYDIGISGGVTTMAPFLIKFFPEVFRKATKVKT-NMYC 74
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM 134
F S LTA+ SSLYIAG+ S+L+A RLT + GRK ++IGG +L G +++ A N+ M
Sbjct: 75 QFDSQLLTAFTSSLYIAGLASSLVASRLTAAVGRKNIMVIGGCTFLAGAAINGGAANIAM 134
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L LGR+ G G+GF NQ P+YL E+AP KWRGA TGFQ F GV A+ IN F M+
Sbjct: 135 LLLGRILLGFGVGFTNQATPVYLSEVAPPKWRGAFSTGFQFFIGVGVVAANCIN-FGMAK 193
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
++ WR ++ ++ PA +MTI A FI DTPSSL++RGKV+QA +SL +VRG + + E
Sbjct: 194 HSWG-WRFSLGLAVVPAAIMTIGALFISDTPSSLVERGKVEQARQSLTKVRGINSNVDAE 252
Query: 255 LKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314
L L+K+NE + A + P+ +LER+YRPHL+ +IA+P FQ LTG N+ A +I S+
Sbjct: 253 LADLLKFNEMAKDAKKEPFLTILERQYRPHLVMSIAIPFFQQLTGINIIAFYAPVIFQSV 312
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G I+ + +L++ ++DR GRR + I+GG Q+FICQV + I++A +
Sbjct: 313 GFGSDSALIAAIVLGLVNLGSILVSTGMVDRHGRRFLFIIGGIQMFICQVAVTIVLAVTT 372
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
GT SK + L+L C G SWGPL W++ EI P+++RS GQ ++ ++F
Sbjct: 373 GISGTKQISKGHGVLLLVLMCIYAAGFGWSWGPLSWLVPSEIFPMKIRSTGQSITVGVNF 432
Query: 435 A 435
A
Sbjct: 433 A 433
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30349813|emb|CAD31121.1| putative monosaccharide-H+ symporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/423 (40%), Positives = 271/423 (64%), Gaps = 3/423 (0%)
Query: 12 LNEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVD 71
+N G+LT ++I CI AS GL+YGYD+G++GG+T FL+KFFP +LR +A+V +
Sbjct: 18 INIGGKLTLSIIITCIVAASGGLLYGYDLGVSGGVTTMVPFLQKFFPDILRKAASAEV-N 76
Query: 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN 131
+C++ S LT + SSLY+AG+ S++ A ++T + GR+ +IIGG +++ G +++ + N
Sbjct: 77 MYCVYDSQILTLFTSSLYLAGLVSSIAASKVTAAYGRRNVIIIGGALFIAGGAINGGSEN 136
Query: 132 MGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFI 191
+ ML LGRV G G+GF NQ AP+YL E AP KWRG TGFQ F GV A INY
Sbjct: 137 IPMLILGRVLLGFGVGFTNQAAPLYLSETAPPKWRGTFNTGFQFFLGIGVVAAGCINY-- 194
Query: 192 MSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDS 251
++ + WR+++ ++ PA +MTI +F I DTP+ L++RGK++QA ++L ++RG+ D
Sbjct: 195 ATAKHTWGWRLSLGLAVVPAAVMTIGSFLITDTPNGLVERGKIEQAKQALRKIRGSSVDI 254
Query: 252 ENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV 311
E EL+ LIK+ E + + P+K +L+R+YRPHL+ A A+P FQ LTG N+ A +
Sbjct: 255 EPELEELIKWTEIAKSVQQEPFKTILKREYRPHLVMAFAIPFFQQLTGINIVAFYSPNLF 314
Query: 312 TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371
S+G II ++ + L++ ++DR+GRR + I GG + +C + ++I++A
Sbjct: 315 HSVGFGHDGALLSAIILGSVSLLSNLISAGIVDRIGRRFLFISGGIMMLVCLIAVSIVLA 374
Query: 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431
+ GT SK +A V L+L CF G SWGPL W++ EI P+++R+ GQ ++ A
Sbjct: 375 VVTGVDGTKDISKGNAIVVLVLLCFYSAGFGWSWGPLTWLIPSEIFPVKIRTTGQSIAVA 434
Query: 432 ISF 434
+ F
Sbjct: 435 VQF 437
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846454|ref|XP_002891108.1| hypothetical protein ARALYDRAFT_473605 [Arabidopsis lyrata subsp. lyrata] gi|297336950|gb|EFH67367.1| hypothetical protein ARALYDRAFT_473605 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 181/424 (42%), Positives = 263/424 (62%), Gaps = 6/424 (1%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
++T +++ CI AS GL++GYDIGI+GG+T + FL+KFFPSVL+ AK + +C
Sbjct: 17 DAKITTAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKKASEAKT-NVYC 75
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM 134
++ S LTA+ SSLY+AG+ ++L+A RLT + GR+ +I+GG +L G ++ LA N+ M
Sbjct: 76 VYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANIAM 135
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L GR+ G G+GF NQ AP+YL E+AP +WRGA +GFQ F GV A+ INY S
Sbjct: 136 LISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNSGFQFFIGVGVVAANLINYGTDSH 195
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTK--FDSE 252
N WRI++ ++ PA +MT+ FI DTPSSL+ RGK QA SL ++RG + D E
Sbjct: 196 RN--GWRISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDQAHTSLLKLRGVENIADVE 253
Query: 253 NELKYLIKYNEDMRIASETPY-KMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV 311
EL L + ++ A P+ K +LER+YRPHL A+A+P FQ LTG +NA ++
Sbjct: 254 IELAELSRSSQLAIEARAEPFMKTILERRYRPHLAVAVAIPCFQQLTGITVNAFYAPVLF 313
Query: 312 TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371
S+G +I + LL++ +IDR GRR + I GG Q+F+CQ+ +A+L+A
Sbjct: 314 RSVGFGSGPALIATLILGLVNLGSLLVSTMVIDRFGRRFLFIAGGIQMFLCQIAVAVLLA 373
Query: 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431
++G K A ++L C G SWGPL W++ EI P+++R AGQ LS A
Sbjct: 374 VTVGANGDGEMKKGYAVTVVVLLCIYSAGFGWSWGPLSWLVPSEIYPLKMRPAGQSLSVA 433
Query: 432 ISFA 435
++FA
Sbjct: 434 VNFA 437
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.958 | 0.824 | 0.407 | 3.1e-83 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.956 | 0.809 | 0.360 | 2.5e-74 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.958 | 0.811 | 0.352 | 1.7e-73 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.956 | 0.796 | 0.360 | 1.7e-73 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.960 | 0.813 | 0.349 | 1.3e-70 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.956 | 0.804 | 0.347 | 7e-70 | |
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.947 | 0.801 | 0.345 | 3e-69 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.949 | 0.805 | 0.346 | 3.8e-69 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.951 | 0.787 | 0.334 | 2.2e-66 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.944 | 0.815 | 0.334 | 4.3e-61 |
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 175/429 (40%), Positives = 255/429 (59%)
Query: 13 NEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG 72
N ++T +++ CI AS GL++GYDIGI+GG+T + FL+KFFPSVL+ AK +
Sbjct: 15 NIDAKITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKKASEAKT-NV 73
Query: 73 FCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNM 132
+C++ S LTA+ SSLY+AG+ ++L+A RLT + GR+ ++ LA N+
Sbjct: 74 YCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANI 133
Query: 133 GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192
ML GR+ G G+GF NQ AP+YL E+AP +WRGA GF F GV A+ INY
Sbjct: 134 AMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYGTD 193
Query: 193 SSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTK--FD 250
S N WRI++ ++ PA +MT+ FI DTPSSL+ RGK +A SL ++RG + D
Sbjct: 194 SHRN--GWRISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDEAHTSLLKLRGVENIAD 251
Query: 251 SENELKYLIKYNE-DMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309
E EL L++ ++ + +E K +L+R+YRPHL+ A+ +P FQ LTG +NA +
Sbjct: 252 VETELAELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCFQQLTGITVNAFYAPV 311
Query: 310 IVTSLGIRLKDVFPILIIQSTIFFV---CLLLTGYLIDRVGRRIMLIVGGCQIFICQVIL 366
+ S+G P LI + FV LLL+ +IDR GRR + I GG + +CQ+ +
Sbjct: 312 LFRSVGFGSG---PALIATFILGFVNLGSLLLSTMVIDRFGRRFLFIAGGILMLLCQIAV 368
Query: 367 AILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQ 426
A+L+A + G K A ++L C G SWGPL W++ EI P+++R AGQ
Sbjct: 369 AVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAAGFGWSWGPLSWLVPSEIFPLKIRPAGQ 428
Query: 427 GLSTAISFA 435
LS A++FA
Sbjct: 429 SLSVAVNFA 437
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 151/419 (36%), Positives = 241/419 (57%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
+G +T +++ CI A GL++GYD+GI+GG+T E FL KFFP V K AK +C
Sbjct: 18 EGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYC 77
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMGM 134
F + L + SSLY+A + ++ MA +T GRK +A AVN+ M
Sbjct: 78 KFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSM 137
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L +GR+ G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ INY S
Sbjct: 138 LIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGT-SK 196
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
+ WR+++ ++ PA +M I +F +PDTP+S+++RGK ++A + L ++RG + ++E
Sbjct: 197 MAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGAD-NVDHE 255
Query: 255 LKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314
+ LI E + E P+K ++E KYRP L+F A+P FQ +TG N+ ++ +L
Sbjct: 256 FQDLIDAVEAAKKV-ENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTL 314
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G +I + + ++ Y +DR GRR++ + GG Q+FICQ+++ + +
Sbjct: 315 GFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARF 374
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ GT + +A L C G A SWGPL W++ EI P+E+R AGQ ++ +++
Sbjct: 375 GTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 433
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 148/420 (35%), Positives = 241/420 (57%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG-F 73
+GR+T ++I CI A GL++GYDIGI+GG+ E FL KFFP VLR +N + + +
Sbjct: 17 EGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEY 76
Query: 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMG 133
C + + LT + SSLY+A +F++ +A +T GRK L+ LA+N+
Sbjct: 77 CKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLE 136
Query: 134 MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193
ML +GR+F G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ +NY
Sbjct: 137 MLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPK 196
Query: 194 SLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSEN 253
N WR+++ ++G PA +M + FF+PDTP+S+++RG ++A + L ++RGT + E+
Sbjct: 197 LQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGT-MEVEH 255
Query: 254 ELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313
E L E + P+ +++ +YRP L F +P FQ LTG N+ ++ +
Sbjct: 256 EFNELCNACEAAKKVKH-PWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKT 314
Query: 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373
+G +I + + +++ Y +D+ GRR + + GG Q+ + Q+ + ++ +
Sbjct: 315 IGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWK 374
Query: 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+G S A + L L C G A SWGPL W++ EI P+E+RSAGQ L+ +++
Sbjct: 375 FGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVN 434
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 151/419 (36%), Positives = 238/419 (56%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCL 75
G+LT +L C+ A GL++GYDIGI+GG+T SFLK+FFPSV R Q+ + +C
Sbjct: 17 GKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQ 76
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMGML 135
+ S LT + SSLY+A + S+L+A +T GR+ ++ A ++ ML
Sbjct: 77 YDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWML 136
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
+GR+ G GIGF NQ P+YL EMAP K+RGA+ GFQ+ G+ A +NYF
Sbjct: 137 IVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIK 196
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
WR+++ + PA ++TI + +PDTP+S+I+RG+ ++A L ++RG D E
Sbjct: 197 GGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVD-DVSQEF 255
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
L+ +++ + + E P++ LL RKYRPHL A+ +P FQ LTG N+ ++ ++G
Sbjct: 256 DDLVAASKESQ-SIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIG 314
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
++ ++ L++ Y +DR GRR + + GG Q+ ICQ ++A + ++
Sbjct: 315 FTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFG 374
Query: 376 SHGT-SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
GT K A V + C G A SWGPL W++ EI P+E+RSA Q ++ +++
Sbjct: 375 VDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVN 433
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
Identities = 147/421 (34%), Positives = 233/421 (55%)
Query: 13 NEKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG 72
N +LT + + C A GL++GYD+GI+GG+T E FL++FFP V + K+A +
Sbjct: 14 NYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHENE- 72
Query: 73 FCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNM 132
+C F S LT + SSLY+A + S+L A +T GRK + + A N+
Sbjct: 73 YCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNI 132
Query: 133 GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192
ML +GR+ G G+GF NQ+ P+YL EMAP RGA GFQ+ G+ A+ INYF
Sbjct: 133 AMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTA 192
Query: 193 SSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252
WRI++ ++ PA ++ I A +PDTP+SLI+RG ++A + L +RGT + +
Sbjct: 193 QMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRGTN-EVD 251
Query: 253 NELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT 312
E + LI +E+ + P+K ++ +YRP L+ +P FQ LTG N+ ++
Sbjct: 252 EEFQDLIDASEESKQVKH-PWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQ 310
Query: 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMAS 372
+LG K ++ I +C ++ + +DR GRRI+ + GG Q+ + Q+ + ++
Sbjct: 311 TLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGV 370
Query: 373 ESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432
+ GT K A + + L C G A SWGPL W++ EI P+E+RSA Q ++ ++
Sbjct: 371 KFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSV 430
Query: 433 S 433
+
Sbjct: 431 N 431
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| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 146/420 (34%), Positives = 238/420 (56%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
+G +T +++ CI A GL++GYD+GI+GG+T E FL KFFP V + A+ +C
Sbjct: 18 EGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYC 77
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMGM 134
F + L + SSLY+A + S+ +A +T GRK +A A N+ M
Sbjct: 78 KFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAM 137
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L +GR+ G+G+GF NQ+ P+YL EMAP K RGA+ GFQ+ G+ A+ INY S
Sbjct: 138 LIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGT-SQ 196
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
+ WR+++ ++ PA +M I +F +PDTP+S+++RGK +QA + L ++RG + + E
Sbjct: 197 MAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGKYEQAREMLQKIRGAD-NVDEE 255
Query: 255 LKYLIKYNEDMRIASETPYKMLLER-KYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313
+ L E + + P+K + ++ KYRP L+F A+P FQ +TG N+ ++ +
Sbjct: 256 FQDLCDACEAAKKV-DNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKT 314
Query: 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373
LG +I + V L++ Y +DR GRRI+ + GG Q+ + Q+++ L+ +
Sbjct: 315 LGFADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMK 374
Query: 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ G+ + +A L C G A SWGPL W++ EI P+E+R AGQ ++ +++
Sbjct: 375 FGTTGSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVN 434
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| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 147/426 (34%), Positives = 242/426 (56%)
Query: 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDG--- 72
G++T ++ C+ A G+++GYDIG++GG+ FLK+FFP V + Q+ + G
Sbjct: 18 GKITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSN 77
Query: 73 --FCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAV 130
+CLF S LT++ SSLY++G+ + L+A +T S GRK +L A
Sbjct: 78 NHYCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQ 137
Query: 131 NMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYF 190
N+ ML + R+ G+G+GF NQ+ P+YL EMAP K+RGAI GFQ+ G A+ INY
Sbjct: 138 NVAMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINY- 196
Query: 191 IMSSLNFKR-WRIAVSVSGFPATLMTIIAFFIPDTPSSLIQR-GKVQQALKSLNQVRGTK 248
+ N K WRI+++ + PA+++T+ + F+P+TP+S+IQ G V + L +VRGT
Sbjct: 197 --ETQNIKHGWRISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTN 254
Query: 249 FDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308
D ++EL L++ + S K LL+RKYRP L+ A+ +P FQ +TG N+ A
Sbjct: 255 -DVQDELTDLVEASSGSDTDSNAFLK-LLQRKYRPELVMALVIPFFQQVTGINVVAFYAP 312
Query: 309 LIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAI 368
++ ++G ++ + LL+ ++DR+GR+ + ++GG Q+ + QV + +
Sbjct: 313 VLYRTVGFGESGSLMSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGV 372
Query: 369 LMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428
++ G + + + ++L C G SWGPL W++ EI P+E+RS Q +
Sbjct: 373 IVMVADVHDG--VIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSV 430
Query: 429 STAISF 434
+ A+SF
Sbjct: 431 TVAVSF 436
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| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 145/419 (34%), Positives = 244/419 (58%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFC 74
+G++T ++I C+ A G ++GYDIGI+GG+T + FL++FF +V +K A +C
Sbjct: 20 QGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHE-SNYC 78
Query: 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMGM 134
+ + L A+ SSLY+AG+ S L+A +T + GR+ L+A AVN+ M
Sbjct: 79 KYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAM 138
Query: 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194
L GR+ G+GIGF NQ P+YL E+APT RG + FQ+ G+ A+ +NY
Sbjct: 139 LLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQ- 197
Query: 195 LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
L WR+++ ++ FPA LMT+ +F+P+TP+SL++RG ++ + L ++RGT+ + E
Sbjct: 198 LKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTE-NVNAE 256
Query: 255 LKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314
L+ ++ +E + + + P++ +L++++RP L+ AI +P FQ LTG N ++ ++
Sbjct: 257 LQDMVDASE-LANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTM 315
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G + + + ++ L+DR+GRR +LI GG Q+ ICQVI+A+++ +
Sbjct: 316 GFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKF 375
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ SK + + +I C V SWGPL W + EI P+E RSAGQ ++ A++
Sbjct: 376 GDNQE--LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVN 432
|
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| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 141/422 (33%), Positives = 237/422 (56%)
Query: 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQ-KNAKVVDGF 73
+ ++T ++I CI A+ GLM+GYD+G++GG+T FL+KFFP V R A +
Sbjct: 16 EAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNY 75
Query: 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMG 133
C + + L + SSLY+AG+ + A T + GR+ V+L+A A ++
Sbjct: 76 CKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLA 135
Query: 134 MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193
ML GR+ G G+GF NQ P++L E+APT+ RG + FQ+ G+ A+ +NY
Sbjct: 136 MLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAK 195
Query: 194 SLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSEN 253
WR+++ ++G PA L+T+ A + +TP+SL++RG++ + L ++RGT + E
Sbjct: 196 IKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTD-NVEP 254
Query: 254 ELKYLIKYNEDMRIASET--PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV 311
E L+ E R+A E P++ LL+R+ RP L+ A+AL FQ TG N ++
Sbjct: 255 EFADLL---EASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLF 311
Query: 312 TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371
++LG ++ + + L++ Y +D+VGRR++L+ G Q+F QV++AI++
Sbjct: 312 STLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILG 371
Query: 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431
+ T++ SK A + +++ C A SWGPL W++ E P+E RSAGQ ++
Sbjct: 372 VKVTDTSTNL-SKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVC 430
Query: 432 IS 433
++
Sbjct: 431 VN 432
|
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| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 140/419 (33%), Positives = 228/419 (54%)
Query: 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVL-RSQKNAKVVDGFCL 75
R+T + CI + G ++GYD+G++GG+T + FLK+FFP + R Q + D +C
Sbjct: 21 RITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETD-YCK 79
Query: 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKXXXXXXXXXXXXXVSLHALAVNMGML 135
+ + LT + SSLY AG+ S A +T GR+ ++A A N+ ML
Sbjct: 80 YDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNILML 139
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
LGR+F G+GIGF NQ P+YL EMAP K RG + FQ+ G+ A+ INY +
Sbjct: 140 ILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKT-EQI 198
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
+ WR+++ ++ PA LM + +P+TP+SL+++GK+++A L +VRGT + E E
Sbjct: 199 HPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTN-NIEAEF 257
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLF-AIALPTFQALTGFNLNAVVGQLIVTSL 314
+ L++ ++ R A + P++ LL R+ RP L+ AI LP FQ LTG N ++ SL
Sbjct: 258 QDLVEASDAAR-AVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSL 316
Query: 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASES 374
G I + V +++ Y D+ GRR +L+ ++F V++ + +A +
Sbjct: 317 GFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKF 376
Query: 375 RSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
G + K + ++L C + SWGP+ W++ E+ P+E RSAGQ + ++
Sbjct: 377 -GEGKEL-PKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVN 433
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y91 | STP5_ARATH | No assigned EC number | 0.4195 | 0.9586 | 0.8241 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00015239001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (500 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 435 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-65 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-48 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-27 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 9e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-11 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-07 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 7e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-06 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 0.001 | |
| PRK10473 | 392 | PRK10473, PRK10473, multidrug efflux system protei | 0.002 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 3e-65
Identities = 118/412 (28%), Positives = 195/412 (47%), Gaps = 20/412 (4%)
Query: 26 CIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYN 85
+ A G ++GYD G+ G F K+F A V L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVL-------SGLIV-- 52
Query: 86 SSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTG 143
S + + +L AG+L GRK +L+IG ++++IG L A + ML +GRV G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIA 203
LG+G I+ P+Y+ E+AP K RGA+G+ +Q+ G+ A+ I + N WRI
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 204 VSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNE 263
+ + PA L+ I F+P++P L+ +GK+++A L ++RG + +
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 264 DMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFP 323
+ + ++ + R LL + L FQ LTG N I +LG L D
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG--LSDSLL 290
Query: 324 ILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFS 383
+ II + FV + +L+DR GRR +L++G + IC ++L + + ++S G I
Sbjct: 291 VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGI-- 348
Query: 384 KRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISFA 435
VA++ AL WGP+PW++ E+ P+ VR ++TA ++
Sbjct: 349 -----VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWL 395
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 6e-48
Identities = 124/418 (29%), Positives = 200/418 (47%), Gaps = 25/418 (5%)
Query: 25 ICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAY 84
+ + A GLM+GYD G+ GG +F KF + S ++ W L
Sbjct: 29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSS----------LWGLVV- 77
Query: 85 NSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIG---VSLHALAVNMGMLFLGRVF 141
S + G AL AG L+ GRK +L+I ++++IG + L A A+++ ML +GRV
Sbjct: 78 -SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVL 136
Query: 142 TGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWR 201
G+G+G + P+YL E+AP RGA+ + +Q+ G+ A +S N WR
Sbjct: 137 LGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196
Query: 202 IAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKY 261
I + + PA L+ + FF+P++P L+ +G+V++A KSL ++RGT + + L L
Sbjct: 197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELI 256
Query: 262 NEDMRIASETPYKMLLE-----RKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGI 316
+ I + R+ R L + L FQ TG N I + G+
Sbjct: 257 DIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV 316
Query: 317 RLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRS 376
F + II + F + +L+DR GRR +L++G + IC +L IL AS
Sbjct: 317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG 376
Query: 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
K S VA++ A+ WGP+PW++ EI P+ +R G ++ A ++
Sbjct: 377 SS-----KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANW 429
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This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-27
Identities = 106/424 (25%), Positives = 180/424 (42%), Gaps = 58/424 (13%)
Query: 33 GLMYGYDIGINGGITKAESFLKKFFPSVLRSQKN-AKVVDGFCLFYSWKLTAYNSSLYIA 91
GL++GYD + I+ L F + ++ A + GFC+ +S I
Sbjct: 21 GLLFGYDTAV---ISGTVESLNTVFVAPQNLSESAANSLLGFCV----------ASALIG 67
Query: 92 GIFSALMAGRLTTSAGRKGALIIGGIIYLI---GVSLHALAV------NMGMLF---LGR 139
I + G + GR+ +L I +++ I G + N G + + R
Sbjct: 68 CIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR 127
Query: 140 VFTGLGIGFINQTAPIYLVEMAPTKWRGAIGT--GFQIFFWSGVAGASWINYFIMSS--- 194
+ G+G+G + +P+Y+ E+AP RG + + F I F G ++NYFI S
Sbjct: 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF--GQLVVYFVNYFIARSGDA 185
Query: 195 --LNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252
LN WR + PA L ++ +F+P+TP L+ RGK +QA L ++ G +
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LAT 244
Query: 253 NELKYLIKYNEDMRIASET--PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI 310
L+ + + R + + + ++ + L FQ G N+ I
Sbjct: 245 QALQEIKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSVFQQFVGINVVLYYAPEI 297
Query: 311 VTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILM 370
+LG II I +L +D+ GR+ + I+G A+ M
Sbjct: 298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG-----------ALGM 346
Query: 371 ASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430
A S GT+ +++ VAL+ F A+SWGP+ W+L EI P +R G+ L+
Sbjct: 347 AIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR--GKALAI 404
Query: 431 AISF 434
A++
Sbjct: 405 AVAA 408
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Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-15
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 27/290 (9%)
Query: 86 SSLYIAGIF-SALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGL 144
S + G+ + + G L+ GRK L++ ++ + L A + N + + R+ G+
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192
Query: 145 GIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAV 204
GIG I A + E P K R +GT Q+FF G+ + YFI WR
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD------WRWLQ 246
Query: 205 SVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNED 264
P L ++++F+P++P LI +G++++ALK L ++ N K
Sbjct: 247 LAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIA-----KINGKKLP------ 295
Query: 265 MRIASETPYKMLLERKYRPHLLFAIALPTFQALT-----GFNLNAVVGQLIVTSLGIRLK 319
+ S + K L K + L P + T + A +V LG
Sbjct: 296 AEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG 355
Query: 320 DVFPILIIQSTIFFVCLLLTGYLIDRVGRR----IMLIVGGCQIFICQVI 365
+++ L I + L+T LIDR+GRR L++ G + + +
Sbjct: 356 NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV 405
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
Query: 86 SSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLG 145
S+ + +L+AG L+ GR+ L++G +++ +G L A A ++ +L +GR GLG
Sbjct: 41 SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLG 100
Query: 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVS 205
G + A + E P K RG F F G + + SL WR
Sbjct: 101 GGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG---WRWLFL 157
Query: 206 VSGFPATLMTIIAFFIP 222
+ L+ ++ F+
Sbjct: 158 ILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 50/263 (19%), Positives = 98/263 (37%), Gaps = 9/263 (3%)
Query: 93 IFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152
F AL G L GR+ L+ +++ + L ALA N+ L + R GLG+G +
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSG-FPA 211
+ E AP ++RG + G A ++ +++ WR V G P
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG---WRSLFYVGGIAPL 182
Query: 212 TLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASET 271
L+ ++ F+P++ L+ + + +N + K + +
Sbjct: 183 LLLLLLMRFLPESIDFLVSKRPE-TVRRIVNAIAPQMQAEAQSALPEQKATQG---TKRS 238
Query: 272 PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTI 331
+K L + K + L + + L + +L+V +
Sbjct: 239 VFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGG 298
Query: 332 FFVCLLLTGYLIDRVGRRIMLIV 354
++ G+L DR+G R+ ++
Sbjct: 299 VIGSIIF-GWLADRLGPRVTALL 320
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 72/350 (20%), Positives = 121/350 (34%), Gaps = 50/350 (14%)
Query: 86 SSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLG 145
++ + + +AGRL+ GR+ L+IG +++ +G+ L A ++ +L + RV GLG
Sbjct: 39 TAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLG 98
Query: 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVS 205
G + A + + P + RG F G A + + S WR A
Sbjct: 99 GGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFG---WRAAFL 155
Query: 206 VSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNED 264
+ A L ++A +P P + ++A L
Sbjct: 156 ILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK------------------ 197
Query: 265 MRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPI 324
L + L L A L LG+ +
Sbjct: 198 ------------LLLRDPVLWLLLALLLFGFAFFALLTYLP---LYQEVLGLSALLAGLL 242
Query: 325 LIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384
L + + + LL G L DR+GRR L++ + + + LA+L +E
Sbjct: 243 LGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE----------- 291
Query: 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
S+ L+ LG G L + L L ++ P E R GL
Sbjct: 292 -SSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAGS 339
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 19/205 (9%)
Query: 86 SSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLG 145
+Y+ + A G L GRK L+I + + G R+ +G G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM----------SSL 195
IG Y E + RG + +F+ G A+ + + I+ S+
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328
Query: 196 NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT-------- 247
F WR+ V V FP F+P++P ++ GK +A L + T
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHP 388
Query: 248 -KFDSENELKYLIKYNEDMRIASET 271
K S N +K + + +E + I S+T
Sbjct: 389 EKVFSVNHIKTIHQEDELIEIESDT 413
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 64/336 (19%), Positives = 116/336 (34%), Gaps = 28/336 (8%)
Query: 94 FSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153
F ALM G GR+ ++ +++ G A +F+ R+ G+G+G ++
Sbjct: 62 FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121
Query: 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATL 213
Y++E P R + G A+ Y ++ + WR +S P
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAA-QVYSLVVPVWGDGWRALFFISILPIIF 180
Query: 214 MTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPY 273
+ IP+ ++ VR T D ++ I A+
Sbjct: 181 ALWLRKNIPEAED-------WKEKHAGKALVR-TMVDILYGGEHRIANIVMTLAAAMVQS 232
Query: 274 KMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFF 333
K P ++ + L F L + ++ + LG+ V I++ +
Sbjct: 233 A----GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAI 288
Query: 334 VCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALIL 393
V + G+L D +GRR + +I + + G +F
Sbjct: 289 VGGCVFGFLGDWLGRRKAYVC-SLLAGQLLIIPVFAIGANVAVLGLGLF----------F 337
Query: 394 RCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429
+ L G+ WG LP E P + R+AG G +
Sbjct: 338 QQMLVQGI---WGILP-KHLGEYFPTDQRAAGLGFT 369
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 58/358 (16%)
Query: 89 YIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG--------MLFLGRV 140
++A A++ G GRK L+I ++ IG L L + +L L R+
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARL 104
Query: 141 FTGLGIGFINQTAPIYLVEMAPTKWRGAIGT----GFQIFFWSGVAGASWINYFIMSSLN 196
G +G A +YL E AP RG G+ G + ++Y +
Sbjct: 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164
Query: 197 FK-RWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENEL 255
+ WRI VS + + + +TP + K ++ + +
Sbjct: 165 LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETL---------- 214
Query: 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG 315
K+R L + L T + + + + +LG
Sbjct: 215 -----------------------TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLG 251
Query: 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375
+ +L++ +FF+ + L+G L DR+GRR +LI+ + V L + +
Sbjct: 252 LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---- 307
Query: 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433
+ F+ F+ L + G+ LP E+ P EVR G L+ ++
Sbjct: 308 --DSGSFT-LFFFLVLGMALIGGMYTGPMGSFLP-----ELFPTEVRYTGASLAYNLA 357
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)
Query: 87 SLYIAG-----IFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVF 141
L +AG + + ++G LT GRK L++G I+++ ++ AL+ N+ +L + R
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 142 TGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWR 201
G G F + ++ P + RG G + + L WR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG---WR 117
Query: 202 IAVSVSGFPATLMTI-IAFFIPDT 224
A I +AF +P+T
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 84 YNSSLYIAGIFSALMAGRLTTSAGRK-GALIIGGIIYLIGVSLHALAVNMGMLFLGRVFT 142
S + GI AL+ G L+ GR+ L+IG ++ +G+ L ALA ++ +L + +
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLL 275
Query: 143 GLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRI 202
G G+GF E+AP + RG F F G A + ++ + +
Sbjct: 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG---YGG 332
Query: 203 AVSVSGFPATLMTIIAFFIP 222
+ A L ++ +P
Sbjct: 333 VFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 17/182 (9%)
Query: 79 WKLTAYNSSLYIAGIFSAL---MAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135
+TA + I A+ + G L G + ++GGI+Y +G + +A+A ++ L
Sbjct: 35 VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94
Query: 136 FLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195
+L G+G A V+ P K RG + G S + I S +
Sbjct: 95 YLTYGLASAGVGIAYGIALNTAVKWFPDK-RGLASGIIIGGYGLGSFILSPL---ITSVI 150
Query: 196 NFKRWRIAVSVSGFPATLM-TIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254
N + A G L+ + AF I P Q +K+ +V +
Sbjct: 151 NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP---------GQLIKTNIEVSVKDYTVWEM 201
Query: 255 LK 256
L+
Sbjct: 202 LR 203
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 87 SLYIAGIFSA-LMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLG 145
S+Y+AG+ +A L AG++ +GRK I G +++I L +LA + GR G+G
Sbjct: 45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIG 104
Query: 146 IGF 148
G
Sbjct: 105 AGC 107
|
Length = 392 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 88/400 (22%), Positives = 145/400 (36%), Gaps = 75/400 (18%)
Query: 83 AYNSSLYIAGIFSALMAGRLTTSAGRK---GALIIGGIIYLIGVSL---HALAVNMGMLF 136
A N S I + L G L GRK G +I II + L + M L
Sbjct: 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLC 119
Query: 137 LGRVFTGLGIGFINQTAPIYLVEMAPTKWRGA-IGTGFQIFFWSGVAGASWINYFIMSSL 195
R + G+GIG + I E A KWRGA + F + + +AGA ++
Sbjct: 120 FWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI---VALIVLA 176
Query: 196 NFKR----------------------WRIAVSVSGFPATLMTIIAFFIPDTP--SSLIQR 231
FK WRI + PA L IP+TP ++ + +
Sbjct: 177 GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK 236
Query: 232 GKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPH--LLFAI 289
V+QA ++ V K E E + K + + + + H L
Sbjct: 237 -DVEQAASDMSAVLQVK--IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGT 293
Query: 290 ALPTFQ---ALTGFNLN-----AVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGY 341
A F A G NLN + +G + ++++ + I + + GY
Sbjct: 294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGN-LIIALAGTVPGY 352
Query: 342 -----LIDRVGRRIMLIVGGCQIFICQVILAILMA---SESRSHGTSIFSKRSAFVALIL 393
L+D +GR+ + ++G F +L ++ + +HG F+A+ +
Sbjct: 353 WVTVFLVDIIGRKPIQLMG----FFILTVLFFVLGFAYNHLSTHG---------FLAIYV 399
Query: 394 RCFLGVGMALSWGP--LPWILNCEILPIEVRSAGQGLSTA 431
++GP +I+ E+ P RS G+S A
Sbjct: 400 LAQF----FANFGPNATTFIVPGEVFPTRYRSTAHGISAA 435
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.98 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.93 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.89 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.89 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.88 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.85 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.84 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.79 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.77 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.72 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.72 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.72 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.7 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.69 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.67 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.62 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.59 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.59 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.57 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.52 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.51 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.49 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.49 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.49 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.45 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.44 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.41 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.38 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.36 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.35 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.3 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.28 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.28 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.25 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.23 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.23 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.2 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.19 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.17 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.16 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.15 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.14 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.13 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.1 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.09 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.09 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.09 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.06 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.05 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.04 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.02 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.02 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.0 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.0 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.98 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.91 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.88 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.86 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.86 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.86 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.86 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.84 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.82 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.82 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.82 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.81 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.81 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.81 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.78 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.77 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.77 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.76 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.75 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.75 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.75 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.71 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.71 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.69 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.67 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.67 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.65 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.64 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.63 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.63 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.63 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.63 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.6 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.59 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.58 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.56 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.56 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.55 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.54 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.53 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.52 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.51 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.41 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.35 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.32 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.31 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.3 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.27 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.26 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.26 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.21 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.21 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.16 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.13 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.12 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.11 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.11 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.08 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.93 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.88 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.86 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.8 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.8 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.73 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.67 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.64 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.41 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.28 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.25 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.17 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.16 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.15 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.07 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.99 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.92 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.84 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.82 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.64 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.63 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.59 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.56 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.33 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.82 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.68 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.45 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 94.17 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.87 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.49 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 91.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.1 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 90.08 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 87.16 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 82.24 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=336.19 Aligned_cols=408 Identities=24% Similarity=0.410 Sum_probs=336.7
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHH
Q 043264 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIF 94 (435)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i 94 (435)
+++..++....+..+.++++-+||+.+++|+. ....+++.++...++++.+++++. -+...+.+.+++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~---~~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDST---LDLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHH
Confidence 34566777888888888889999999999865 377788877777666553322221 233467888999999999
Q ss_pred HHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhh
Q 043264 95 SALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGT 171 (435)
Q Consensus 95 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 171 (435)
|++..|.++||+|||..+.++.++..++.++..++ +++++++++|++.|+..|......+.++.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 99999999999999999999999888888777765 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHh-cCCHHHHHHHHHHHhCCCcC
Q 043264 172 GFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQ-RGKVQQALKSLNQVRGTKFD 250 (435)
Q Consensus 172 ~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~-~~~~~~a~~~~~~~~~~~~~ 250 (435)
..+.+..+|.+++..++..-.- .++..|++.+.+..+++++..+...++||||||+.. +++.+||+++++++++++.+
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~il-Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLL-GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhc-CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 9999999999999766533221 113569999999999999999999999999999998 89999999999999998743
Q ss_pred cHHHHHHHHHHHHHh-hhhccccHhhhhcc-CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 043264 251 SENELKYLIKYNEDM-RIASETPYKMLLER-KYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQ 328 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 328 (435)
.++..+..++.++++ +++++.++++++++ ..++...+.+.+....++++.+...+|...++++.|++..++.+.....
T Consensus 235 ~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~ 314 (485)
T KOG0569|consen 235 EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGI 314 (485)
T ss_pred hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333222222222222 22256788999974 5677778888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccc
Q 043264 329 STIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPL 408 (435)
Q Consensus 329 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (435)
++..++.++++.+++||+|||++++.+..++.+..+++.......... .....+..+++.+++...++.+.+|+
T Consensus 315 g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~------~~~~~y~~i~~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 315 GIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF------GSWLSYLCIAAIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhhhcCCCch
Confidence 999999999999999999999999999999998888877665432210 11233456788889999999999999
Q ss_pred cceeecccCChhhhhhhhHHHHhhhcC
Q 043264 409 PWILNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 409 ~~~~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
++.+.+|++|++.|++++++..+++|+
T Consensus 389 ~~fi~aELf~~~~R~aa~s~~~~~~w~ 415 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSAAQSVATAVNWL 415 (485)
T ss_pred hHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 999999999999999999999998874
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.02 Aligned_cols=400 Identities=32% Similarity=0.569 Sum_probs=327.5
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCccccccc--chhhHHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYS--WKLTAYNSSLYIAGIF 94 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~i 94 (435)
..........+...++.+.+|++ +..+.........++....... ..+. .+.+|+.++..++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~ 104 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALV 104 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHH
Confidence 44556778888888999999998 4333223223444443221111 1122 4669999999999999
Q ss_pred HHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHH
Q 043264 95 SALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQ 174 (435)
Q Consensus 95 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (435)
+++++|+++|++|||+.++++.+++.++++++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+
T Consensus 105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~ 184 (513)
T KOG0254|consen 105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ 184 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhC-CCcCcHH
Q 043264 175 IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRG-TKFDSEN 253 (435)
Q Consensus 175 ~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~ 253 (435)
....+|..++..++....+. . ++||..+.+..+++++..+..+++||||+|+.++++.+++++.++++++ .+.+.+.
T Consensus 185 l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~ 262 (513)
T KOG0254|consen 185 LFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEV 262 (513)
T ss_pred HHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHH
Confidence 99999999997776666543 1 4799999999999999888888899999999999999999999999998 4455666
Q ss_pred HHHHHHHHHH-Hhh-hhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q 043264 254 ELKYLIKYNE-DMR-IASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTI 331 (435)
Q Consensus 254 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 331 (435)
+.++.+.... +.. .+.+..+++++++..+++..+...+..+.++++.+...+|.+.+++..|.+... .....+.++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v 341 (513)
T KOG0254|consen 263 ELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV 341 (513)
T ss_pred HHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence 6655552221 111 122224677777667788888999999999999999999999999998887554 6667778888
Q ss_pred HHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccce
Q 043264 332 FFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWI 411 (435)
Q Consensus 332 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (435)
..++..++.++.||+|||+.++.+...+.++.++++........+.+. .....+..++..+++...++.+++|++|.
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~f~~g~g~v~w~ 418 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNS---SKGAGWLAIVFLCLFIFSFAIGWGPVPWV 418 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCc---ccchhHHHHHHHHHHHHHHhcccccchhh
Confidence 889989999999999999999999999999999988876654332111 33556788888889999999999999999
Q ss_pred eecccCChhhhhhhhHHHHhhhcC
Q 043264 412 LNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 412 ~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
+.+|.+|.+.|+++.+++..++|+
T Consensus 419 ~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 419 IVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred hhhccCcHhHHhhhHHHHHHHHHH
Confidence 999999999999999999998873
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=319.72 Aligned_cols=379 Identities=18% Similarity=0.251 Sum_probs=290.9
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHh
Q 043264 19 TGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALM 98 (435)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~ 98 (435)
.+..|.+.++++++.+.++++...++.+ +|.+.+++ +++..+.+++.++++++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888889999999887754 46666666 889999999999999999999999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHH
Q 043264 99 AGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFW 178 (435)
Q Consensus 99 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (435)
+|+++||+|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC----------CCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCC
Q 043264 179 SGVAGASWINYFIMSSLN----------FKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTK 248 (435)
Q Consensus 179 ~g~~~~~~l~~~l~~~~~----------~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~ 248 (435)
+|.++++.++..+....+ ..+||+.+++.+++.++.++..+++||||+|+..+++.++|.+.+++++..+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999988877664322 2469999999988888877777889999999999999999999999998665
Q ss_pred cCc----HHHH--HHHHHHHHHh-----hhhc------------------cccHhhhhccCchhHHHHHHHHHHHHHhhc
Q 043264 249 FDS----ENEL--KYLIKYNEDM-----RIAS------------------ETPYKMLLERKYRPHLLFAIALPTFQALTG 299 (435)
Q Consensus 249 ~~~----~~~~--~~~~~~~~~~-----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (435)
... ++.. ++.+.....+ ++.. ..+++++++++.+++.++...+ ++....+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~~~~ 460 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTLSFG 460 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHHHHH
Confidence 321 1111 1111100000 0000 0135566666666665554444 4555556
Q ss_pred hhHHHHHHHHHHHHc------------------------------------------CC-----C---------------
Q 043264 300 FNLNAVVGQLIVTSL------------------------------------------GI-----R--------------- 317 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~------------------------------------------g~-----s--------------- 317 (435)
++.+..|.|.+++.. |+ +
T Consensus 461 yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (742)
T TIGR01299 461 YYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVT 540 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeecc
Confidence 888899999875331 00 0
Q ss_pred C-----------------------------------------------------CchHHHHHHHHHHHHHHHhhhHHHHh
Q 043264 318 L-----------------------------------------------------KDVFPILIIQSTIFFVCLLLTGYLID 344 (435)
Q Consensus 318 ~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (435)
. ........+..++.+++.++.++++|
T Consensus 541 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D 620 (742)
T TIGR01299 541 SSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD 620 (742)
T ss_pred ccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00133355677899999999999999
Q ss_pred hhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhh
Q 043264 345 RVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSA 424 (435)
Q Consensus 345 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 424 (435)
|+|||+++.++.++.+++++++.+. .+....++..++.+++.+..+. ..+++++|++|++.|++
T Consensus 621 r~GRr~~l~~~~~lsai~~ll~~~~---------------~s~~~ll~~~~l~g~~~~~~~~-~~~a~~aEl~Pt~~Rgt 684 (742)
T TIGR01299 621 KIGRLRMLAGSMVLSCISCFFLSFG---------------NSESAMIALLCLFGGLSIAAWN-ALDVLTVELYPSDKRAT 684 (742)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHH---------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHH
Confidence 9999999999988888887776653 1223344444555555554444 45688899999999999
Q ss_pred hhHHHHhhhc
Q 043264 425 GQGLSTAISF 434 (435)
Q Consensus 425 ~~~~~~~~~~ 434 (435)
++|+.++.++
T Consensus 685 a~Gi~~~~~r 694 (742)
T TIGR01299 685 AFGFLNALCK 694 (742)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=313.57 Aligned_cols=390 Identities=20% Similarity=0.225 Sum_probs=278.9
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHH
Q 043264 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIF 94 (435)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i 94 (435)
+.+..+.++.+++++.++.+.+|||...++.+. |.+..++.. ++.+.++.+.+++.+.+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ig~~i 71 (502)
T TIGR00887 7 TAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYYH-------------GKGPLPSSVSAAVNGSASIGTLA 71 (502)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc-------------CcccchHHHHHHHHHHHHHHHHH
Confidence 345667778888888899999999999988654 444333210 01245677889999999999999
Q ss_pred HHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccc------hhHHHHHHhhhhccccccccccchhhhcccCCCCcch
Q 043264 95 SALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN------MGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGA 168 (435)
Q Consensus 95 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (435)
+++++|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+....+++|++|+++|++
T Consensus 72 g~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~ 151 (502)
T TIGR00887 72 GQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA 151 (502)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999998876 7889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcC--------------------CCCcchHHHHhhhHHHHHHHHHhccCCCChhhH
Q 043264 169 IGTGFQIFFWSGVAGASWINYFIMSSL--------------------NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL 228 (435)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~l~~~l~~~~--------------------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l 228 (435)
++++.+....+|.++++.++..+.... .+++||+++.+.++++++..+..+++||||+|+
T Consensus 152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l 231 (502)
T TIGR00887 152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT 231 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999998887654311 124799999999988888877788899999999
Q ss_pred HhcCCHH-HHHHHHHHHhCCCcCc-HHHHHHHHHHHHHhhhhccccHhhhhccCc---hhHHHHHHHHHHHHHhhchhHH
Q 043264 229 IQRGKVQ-QALKSLNQVRGTKFDS-ENELKYLIKYNEDMRIASETPYKMLLERKY---RPHLLFAIALPTFQALTGFNLN 303 (435)
Q Consensus 229 ~~~~~~~-~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 303 (435)
..++|.+ ++++.+++....+.+. .++.++.++ + ++..+.+++++++++. ..+..+......+.....++..
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 307 (502)
T TIGR00887 232 ADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---A-VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307 (502)
T ss_pred HHhCcchHHHHHHHHHHhccccccCcccccchhc---c-ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9988875 4777777665432211 111111111 1 1111235667665321 1122232222223222234455
Q ss_pred HHHHHHHHHHcCCCCCchHH------------HHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHH
Q 043264 304 AVVGQLIVTSLGIRLKDVFP------------ILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371 (435)
Q Consensus 304 ~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 371 (435)
..+.|.++++.|++..+.+. ...+..++.+++.++.++++||+|||+.+..+..+..+++.++.....
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888887653221 233445567778899999999999999998888777777666654321
Q ss_pred hhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhcC
Q 043264 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
..... ......++....++.+..++.+.+.+|.+|++.|+++.|+.++++++
T Consensus 388 -----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~ 439 (502)
T TIGR00887 388 -----------HLSTH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA 439 (502)
T ss_pred -----------hcchh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhh
Confidence 00111 11122222223334555667778889999999999999999988763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=306.24 Aligned_cols=387 Identities=25% Similarity=0.396 Sum_probs=290.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHh
Q 043264 19 TGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALM 98 (435)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~ 98 (435)
.+.+..+++++.++.+.++||..++++.. |.+++.|.+.. .++++.++.+.+++.+++.++..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhcccc----------cccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 34466677777788899999999998654 77888885543 2234889999999999999999999999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHhc------------cchhHHHHHHhhhhccccccccccchhhhcccCCCCc
Q 043264 99 AGRLTTSAGRKGALIIGGIIYLIGVSLHALA------------VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWR 166 (435)
Q Consensus 99 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 166 (435)
+|+++||+|||+++.++.+++.++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998888763 2256788999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHH
Q 043264 167 GAIGTGFQIFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSL 241 (435)
Q Consensus 167 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~ 241 (435)
++++++.+.+..+|.++++.++..+.... ++.+||+.|++.+++.++..+..+++||+|+|+..+++.+++++..
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHH
Confidence 99999999999999999988877664321 2367999999988888777666778999999998888888888777
Q ss_pred HHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCch
Q 043264 242 NQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDV 321 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 321 (435)
++..+.+ +.+...++.++..++++ ...+..+. ..............+.+..+.+...++.|.+.++.|.+....
T Consensus 235 ~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~ 308 (479)
T PRK10077 235 RKIMGNT-LATQALQEIKHSLDHGR----KTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA 308 (479)
T ss_pred HHHcCCh-hHHHHHHHHHHHHHHhh----hhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH
Confidence 7765443 11112222211111000 00111111 011111222223334445556667778899888899988777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHh
Q 043264 322 FPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGM 401 (435)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (435)
.......++..+++.++.+++.||+|||+.+..+..+.+++.+.+..... ............++++.++
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~ 377 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-----------TQAPGIVALLSMLFYVAAF 377 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh-----------cCcccHHHHHHHHHHHHHH
Confidence 77778888999999999999999999999999999888888777654421 1112223444555566666
Q ss_pred hhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 402 ALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 402 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+..+.|..+.++.|.+|++.|+++.|+.+.+++
T Consensus 378 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 410 (479)
T PRK10077 378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 410 (479)
T ss_pred hccccchhHHHhHhhCChhHHHHHHHHHHHHHH
Confidence 666667778899999999999999999887654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=282.36 Aligned_cols=400 Identities=30% Similarity=0.503 Sum_probs=290.2
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHH
Q 043264 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIF 94 (435)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i 94 (435)
..+..|+.+..++.+.++.+..+++...++... +....++.-+... +-+.+..+.+++.+++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i 86 (481)
T TIGR00879 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFTSAN----------SDSYSSSLWGLVVSIFLVGGFI 86 (481)
T ss_pred CCcccHHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcCCcc----------cCCCChhHHHHHHHHHHHHHHH
Confidence 344556677777777778888999998887654 4444444111111 1146789999999999999999
Q ss_pred HHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc---chhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhh
Q 043264 95 SALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV---NMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGT 171 (435)
Q Consensus 95 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 171 (435)
+++++|+++||+|||+++.++.++..++.+++.+.. +++.++++|+++|++.+...+....++.|++|+++|+++.+
T Consensus 87 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 166 (481)
T TIGR00879 87 GALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTS 166 (481)
T ss_pred HHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhh
Confidence 999999999999999999999999999999986653 45589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCC
Q 043264 172 GFQIFFWSGVAGASWIN---YFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTK 248 (435)
Q Consensus 172 ~~~~~~~~g~~~~~~l~---~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~ 248 (435)
+.+.+..+|..+++.++ ....+ ..+||+.|++.++..++..+..+++||+|+++..+++.+++++..++....+
T Consensus 167 ~~~~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR00879 167 LYQLAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS 243 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCC
Confidence 99999999999999998 44333 3569999999777777666667789999998888888777766666554433
Q ss_pred cCcHHHHHHHH---HHHHHhhhhccccHhhhhccC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHH
Q 043264 249 FDSENELKYLI---KYNEDMRIASETPYKMLLERK--YRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFP 323 (435)
Q Consensus 249 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 323 (435)
.+..+..+... ...+.+.+..+..+++.++.. ..++.++...+..+...........+.|.+.++.|++..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 323 (481)
T TIGR00879 244 GEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFL 323 (481)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHH
Confidence 22222111111 111111111122234444321 2345455555555555555666778889988889999988888
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhh
Q 043264 324 ILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMAL 403 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (435)
......++.+++.++.+++.||++||+.+..+..+.+++.+++.+.......+. .....+..+....++..+++.
T Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 398 (481)
T TIGR00879 324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-----SKSSGNVAIVFILLFIAFFAM 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-----ccchhHHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999998887777777666653321100000 001133444455556666666
Q ss_pred ccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 404 SWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 404 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+..+....+..|.+|++.|+++.|+.++..+
T Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 429 (481)
T TIGR00879 399 GWGPVPWVIVSEIFPLSLRPKGISIAVAANW 429 (481)
T ss_pred cccCeehhhhhccCChHHHHHHHHHHHHHHH
Confidence 6677777888999999999999999887654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=284.18 Aligned_cols=355 Identities=19% Similarity=0.206 Sum_probs=245.8
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhH--HHHHHHHHHHHHHHhHHHh
Q 043264 25 ICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTA--YNSSLYIAGIFSALMAGRL 102 (435)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~~s~~~~~~~i~~~~~g~l 102 (435)
......++.++++||..+++.. .|.+.++++|+..+ ....++. ..++.+++..+|+++.|++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~ig~~~~G~l 80 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFV--AYALGKVFFPGADP--------------SVQMIAALATFSVPFLIRPLGGLFFGML 80 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCCCCc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999998855 36777777553210 0011222 2578889999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHhccchhH--------HHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHH
Q 043264 103 TTSAGRKGALIIGGIIYLIGVSLHALAVNMGM--------LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQ 174 (435)
Q Consensus 103 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (435)
+||+|||+++.+++++++++++++++++|+++ ++++|+++|++.|...+...++++|++|+++|+++.++..
T Consensus 81 ~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~ 160 (490)
T PRK10642 81 GDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLD 160 (490)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999875 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCc
Q 043264 175 IFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKF 249 (435)
Q Consensus 175 ~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~ 249 (435)
.+..+|..+++.+...+.... .+++||+.|++.++++++..+....+||+|+|...+++.++..
T Consensus 161 ~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------- 229 (490)
T PRK10642 161 FGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-----------
Confidence 888888888887765543311 2368999999988776665555667999998753322211100
Q ss_pred CcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHH
Q 043264 250 DSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQ 328 (435)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~ 328 (435)
.+..++.++.++++++++ .++...... ...+.....++....|.|.+++ ..|++..+........
T Consensus 230 ------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 295 (490)
T PRK10642 230 ------------REGLQDGPKVSFKEIATK-HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAI 295 (490)
T ss_pred ------------cccccccccCCHHHHHHH-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000000113345566543 222222222 2222222335566778888885 4788887777777788
Q ss_pred HHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccc
Q 043264 329 STIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPL 408 (435)
Q Consensus 329 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (435)
.++.+++.++.|+++||+|||+.+..+.....++...+.... ...+.....+..++.+++.+...+..
T Consensus 296 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~g~~ 363 (490)
T PRK10642 296 MIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI------------NSNVIGLIFAGLLMLAVILNCFTGVM 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH------------hCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988777654443332222111 11222333344444444444333333
Q ss_pred cceeecccCChhhhhhhhHHHHhhh
Q 043264 409 PWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 409 ~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
..+.+|.+|++.|+++.|+.+.++
T Consensus 364 -~~~~~~~~p~~~Rg~~~g~~~~~~ 387 (490)
T PRK10642 364 -ASTLPAMFPTHIRYSALAAAFNIS 387 (490)
T ss_pred -HHHHHHHCCCccchHHHHHHHHHH
Confidence 356679999999999999765543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=331.29 Aligned_cols=386 Identities=33% Similarity=0.577 Sum_probs=295.3
Q ss_pred HHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc
Q 043264 28 AVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG 107 (435)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G 107 (435)
++.++.+.+|||...++..........++.++... .+++.++.+.++..+...+|..+|+++.|.++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSE---------SSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhcccccccc---------ccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 34567799999999988766444433333222211 111224567899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc---chhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHH
Q 043264 108 RKGALIIGGIIYLIGVSLHALAV---NMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGA 184 (435)
Q Consensus 108 rr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 184 (435)
||+.+.++.++..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHH
Q 043264 185 SWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNED 264 (435)
Q Consensus 185 ~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (435)
..++.......++++||..+.+..+++++..+...++||||+|+..++|.|||++.+++.++++.+ +++.++..++.++
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~ 233 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEEIKAEKKE 233 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccc-ccccccccccccc
Confidence 888776644333467999999999998888777888999999999999999999999997665422 2222222222222
Q ss_pred hhhhccccHhhhhccC-chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHH
Q 043264 265 MRIASETPYKMLLERK-YRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLI 343 (435)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 343 (435)
.++. +.+++++++++ .+++......+..+.++.+......|.+.+++..|.+.. ........+...++.+++.++.
T Consensus 234 ~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 310 (451)
T PF00083_consen 234 SQES-KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLI 310 (451)
T ss_pred cccc-ceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc
Confidence 2111 25667777653 355556666666666677777777888888888777766 3444556677778888888999
Q ss_pred hhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccch---hhHHHHHHHHHHHHHhhhccccccceeecccCChh
Q 043264 344 DRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKR---SAFVALILRCFLGVGMALSWGPLPWILNCEILPIE 420 (435)
Q Consensus 344 d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 420 (435)
||+|||+.++.+...++++.+.++.... .. ... .....++...++..+++.++.++.+.+++|++|++
T Consensus 311 ~~~GRr~~~i~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~ 381 (451)
T PF00083_consen 311 DRFGRRKLLIIGLLLMAICSLILGIIFF--LG-------VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTK 381 (451)
T ss_pred cccccccccccccccccccccccccccc--cc-------cccccccccccceeeeecccccccccccccccccccccccc
Confidence 9999999999988888887776651110 00 111 13444555556666777788888889999999999
Q ss_pred hhhhhhHHHHhhhcC
Q 043264 421 VRSAGQGLSTAISFA 435 (435)
Q Consensus 421 ~r~~~~~~~~~~~~l 435 (435)
.|+++.|+++.++++
T Consensus 382 ~R~~~~~~~~~~~~i 396 (451)
T PF00083_consen 382 VRSTGIGLSYAVGRI 396 (451)
T ss_pred ccccccccccccccc
Confidence 999999999987764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=274.94 Aligned_cols=351 Identities=19% Similarity=0.226 Sum_probs=240.9
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccc---hhhHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSW---KLTAYNSSLYIAGI 93 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~~~~s~~~~~~~ 93 (435)
..+.+++.......++.+.+++|...++.. .|.+.++++|+. .+.. +.+.+.+..+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 77 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPSG---------------NTTTQLLQTAGVFAAGFLMRP 77 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCCC---------------CchHHHHHHHHHHHHHHHHHH
Confidence 344455556666677889999999998754 377778875531 2233 34445556666777
Q ss_pred HHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh--------HHHHHHhhhhccccccccccchhhhcccCCCC
Q 043264 94 FSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG--------MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKW 165 (435)
Q Consensus 94 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 165 (435)
++++++|+++||+|||+++..+.++++++++++++++++. .+++.|+++|++.|...+...++++|++|+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999874 58899999999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHH
Q 043264 166 RGAIGTGFQIFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKS 240 (435)
Q Consensus 166 r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~ 240 (435)
|+++.++.+.+...|.++++.+...+.... ..++||++|++.++++++.......+||+|++..
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~----------- 226 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET----------- 226 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH-----------
Confidence 999999998888888888887766554321 1367999999988887776555556788764210
Q ss_pred HHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCC
Q 043264 241 LNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLK 319 (435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~ 319 (435)
+ +. +++.+++++++++.. +.......+.....++....|.|.+++ +.|++..
T Consensus 227 ---------------~-------~~--~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~ 279 (432)
T PRK10406 227 ---------------R-------AL--KEAGSLKGLWRNRRA---FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHAN 279 (432)
T ss_pred ---------------h-------hh--cccccHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 0 00 002245555543221 222222222212234556778888875 4788888
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHH
Q 043264 320 DVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGV 399 (435)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (435)
+.+.......+...++..+.|+++||++||+.+..+..+.++....+..... ...+.+.......+...
T Consensus 280 ~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 348 (432)
T PRK10406 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-----------NVSSPYAAFGLVMCALL 348 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------cCCcHHHHHHHHHHHHH
Confidence 8888888888888888899999999999999877655543333222211110 11112222222221222
Q ss_pred HhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 400 GMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 400 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+.. .+..+.+.+|.+|++.|+++.|+.+.+++
T Consensus 349 ~~~~~-~~~~~~~~~e~fp~~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 349 IVSFY-TSISGILKAEMFPAQVRALGVGLSYAVAN 382 (432)
T ss_pred HHHHH-HHHHHHHHHHHCCCCccchhhhHHHHHHH
Confidence 22222 22345677899999999999999987654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=280.47 Aligned_cols=337 Identities=22% Similarity=0.357 Sum_probs=251.8
Q ss_pred Ccccccc---cchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccc
Q 043264 71 DGFCLFY---SWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIG 147 (435)
Q Consensus 71 ~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 147 (435)
.++++++ +.+.++..+++.++.++++++.|+++||+|||+++.++.++..++.+++++++|++.+++.|++.|++.+
T Consensus 116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~ 195 (505)
T TIGR00898 116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG 195 (505)
T ss_pred EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcc
Confidence 4455888 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhh
Q 043264 148 FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSS 227 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~ 227 (435)
...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+ ||+.+++.+++.++..+..+++||+|+|
T Consensus 196 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 196 GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD------WRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 9999999999999999999999999999999999999999877744 9999999998888877777789999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCc-HHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDS-ENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVV 306 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
+..+++.+++++.+++..+.+... .++..+...+.+.+++.++.+++++++++..+...+.....++... ...+.
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 345 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTA----FSYYG 345 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHH----HHHHH
Confidence 999999999998888776443211 1111111111111111123467777776555444444333333211 11122
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 307 GQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 307 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
.+......+.+ ........++..+++.++.+++.||+|||+.+.++..+.+++++++.+. +...
T Consensus 346 ~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-------------~~~~ 409 (505)
T TIGR00898 346 LVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-------------PVDL 409 (505)
T ss_pred HhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-------------CCCc
Confidence 22222334433 3445566778889999999999999999999998888877777665543 2122
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+......++.+++.+..+ +..+.+..|.+|++.|++++|+.+++++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 456 (505)
T TIGR00898 410 YFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMAR 456 (505)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence 2333344444444444443 3446788999999999999999988765
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=267.75 Aligned_cols=363 Identities=13% Similarity=0.118 Sum_probs=247.1
Q ss_pred HHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHh
Q 043264 23 LIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRL 102 (435)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l 102 (435)
+.....++++.+.+++|...++... |.+.+++ |++..+.+++.+++.+++.+++++.|++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~g~l 66 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL------------------GLSATMFGLAATLFYAAYVICGIPSNIM 66 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc------------------CCCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455555677888888877543 5666666 9999999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHH
Q 043264 103 TTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVA 182 (435)
Q Consensus 103 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 182 (435)
+||+|||+++..+.++++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---CCCCcchHHHHhhhHHHHHHHHH-hccCCCChh---hHHhcCCHHHHHHHHHHHhCCCcCcHHHH
Q 043264 183 GASWINYFIMSS---LNFKRWRIAVSVSGFPATLMTII-AFFIPDTPS---SLIQRGKVQQALKSLNQVRGTKFDSENEL 255 (435)
Q Consensus 183 ~~~~l~~~l~~~---~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 255 (435)
+++.+++.+.+. .+..+||+.|.+.+++.++..+. .+++||+|+ |+.+ ++.+...+..+.++.+.++.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~- 221 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQP- 221 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccccccc-
Confidence 999999888643 12357999999988887765544 466899884 2211 11111111111110000000
Q ss_pred HHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHHH
Q 043264 256 KYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL--GIRLKDVFPILIIQSTIFF 333 (435)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~ 333 (435)
+ +..++++...+..+++++ . +.++...+..++.......+..|.|.++++. |++..+++.......++.+
T Consensus 222 ~---~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~ 293 (412)
T TIGR02332 222 E---GAFAHAAMPQRSMLREIF----T-PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTI 293 (412)
T ss_pred c---cccccccccHHHHHHHhc----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHH
Confidence 0 000000000011122222 1 2233344444444455677888999999874 5677788888999999999
Q ss_pred HHHhhhHHHHhhhcchHHH-HHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccccee
Q 043264 334 VCLLLTGYLIDRVGRRIML-IVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWIL 412 (435)
Q Consensus 334 ~~~~~~g~l~d~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (435)
++.++.|+++||+++|+.. ........++. ++... .... ........+...+.... .+..+..
T Consensus 294 ~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-------------~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~ 357 (412)
T TIGR02332 294 FGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-------------TDHN-LIQLLGIIMASMGSFSA-MAIFWTT 357 (412)
T ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-------------cCCH-HHHHHHHHHHHHHhhhh-hhHHHhh
Confidence 9999999999999977643 33333333322 22111 1111 11122222222222211 2333455
Q ss_pred ecccCChhhhhhhhHHHHhhhc
Q 043264 413 NCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 413 ~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..|.+|+++|+++.|+.++.++
T Consensus 358 ~~~~~~~~~~~~a~g~~~~~~~ 379 (412)
T TIGR02332 358 PDQSISLQARAIAIAVINATGN 379 (412)
T ss_pred cccccchHHHHHHHHHHHHhhh
Confidence 5788999999999999998765
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=265.75 Aligned_cols=367 Identities=16% Similarity=0.151 Sum_probs=254.5
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHH
Q 043264 18 LTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSAL 97 (435)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~ 97 (435)
.+++++.....+.++.+.++++....+... |.+.+++ |+++.+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 344556666677777788899888877553 6666666 89999999999999999999999
Q ss_pred hHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHH
Q 043264 98 MAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFF 177 (435)
Q Consensus 98 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 177 (435)
+.|.++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHH
Q 043264 178 WSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKY 257 (435)
Q Consensus 178 ~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (435)
.+|..+++.+++.+.+..+ .+||+.|.+.+++.++..+....+||++++...+++.++.++..++..+.+...+
T Consensus 146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 219 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA----- 219 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh-----
Confidence 9999999999998877543 4599999887776666655566789987654322221111111111110000000
Q ss_pred HHHHHHHhhhhccccHhhhhccCchhHHHH-HHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHH
Q 043264 258 LIKYNEDMRIASETPYKMLLERKYRPHLLF-AIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVC 335 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~ 335 (435)
+..++.....++. ...++..+. ......+.... ......+.|.++ ++.|++..+.+.......++.+++
T Consensus 220 ------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g 290 (405)
T TIGR00891 220 ------NIVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVG 290 (405)
T ss_pred ------hhhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 0000000001110 111111111 11111111111 223444566666 457999999999999999999999
Q ss_pred HhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecc
Q 043264 336 LLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCE 415 (435)
Q Consensus 336 ~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 415 (435)
+++.+++.||++||+.+..+.....+....... ...+.+...+..++.+.+..... +....+..|
T Consensus 291 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 355 (405)
T TIGR00891 291 GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA--------------IGANVAVLGLGLFFQQMLVQGIW-GILPKHLGE 355 (405)
T ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH--------------hCCchHHHHHHHHHHHHHHccch-hhHHHHHhh
Confidence 999999999999999888776554332222211 11223333333344444433333 334567789
Q ss_pred cCChhhhhhhhHHHHhhhc
Q 043264 416 ILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 416 ~~p~~~r~~~~~~~~~~~~ 434 (435)
.+|++.|+++.|+.+.++.
T Consensus 356 ~~~~~~~~~~~g~~~~~~~ 374 (405)
T TIGR00891 356 YFPTDQRAAGLGFTYQLGN 374 (405)
T ss_pred hCCcchhHHHhhHHHHHHH
Confidence 9999999999999887654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=241.80 Aligned_cols=342 Identities=16% Similarity=0.199 Sum_probs=263.1
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccc
Q 043264 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
+.||.+..+..++......|..+++..+|..+|++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+ .|
T Consensus 106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~p 184 (528)
T KOG0253|consen 106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LP 184 (528)
T ss_pred hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-cc
Confidence 33588999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhc
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQR 231 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~ 231 (435)
...++-.|..|..+|...+-.. ..+.+|.++...++....... ||||.....+.+..+.....+++|||||++..+
T Consensus 185 v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~---gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~ 260 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF---GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK 260 (528)
T ss_pred HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc
Confidence 8889999999999999877777 899999999999999988865 599988888888777777788999999999999
Q ss_pred CCHHHHHHHHHHHhCCCcC----------cHHHHHH----HHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHh
Q 043264 232 GKVQQALKSLNQVRGTKFD----------SENELKY----LIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQAL 297 (435)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (435)
++++||.+.+.++...|.. .+++.++ ..+......++.+....+++.++.++..+....+.+...+
T Consensus 261 G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnaf 340 (528)
T KOG0253|consen 261 GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAF 340 (528)
T ss_pred CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHH
Confidence 9999999999988755421 1111111 1111111223335567778877777776666655554444
Q ss_pred hchhHHHHHHHHHHHHc--------------------CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHH
Q 043264 298 TGFNLNAVVGQLIVTSL--------------------GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGC 357 (435)
Q Consensus 298 ~~~~~~~~~~~~~~~~~--------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 357 (435)
+ ++........+.+.. ..+.+.-..-..+..+....|.++.++++||+|||+.+..+.+
T Consensus 341 s-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~ 419 (528)
T KOG0253|consen 341 S-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLI 419 (528)
T ss_pred H-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHH
Confidence 4 233333333332221 1122333445677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhcC
Q 043264 358 QIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 358 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
+.+++.+.+..+. ......+..+..-++.+.++. ..|+|++|++|+..|+++.|.+...+++
T Consensus 420 ~f~iflfll~~c~---------------~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRI 481 (528)
T KOG0253|consen 420 LFGIFLFLLTTCK---------------TRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARI 481 (528)
T ss_pred HHHHHHHHHHHhc---------------CcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhh
Confidence 9988887776542 222334444555555555555 4589999999999999999999988763
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=253.27 Aligned_cols=364 Identities=16% Similarity=0.111 Sum_probs=271.8
Q ss_pred CCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHH
Q 043264 16 GRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFS 95 (435)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~ 95 (435)
+..++.++.+...+.+++..+++..-..+ .+.|.++++. ++|.+|+|.+.+.+++.+.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~s 80 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDG------------------GLSKTQLGILGSAFSITYGVS 80 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 34555667777778888888888777776 4457777776 899999999999999999999
Q ss_pred HHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHH
Q 043264 96 ALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQI 175 (435)
Q Consensus 96 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (435)
-++.|.++||.+.|+.+.+++++.++..++++++++.+.+.+..+++|..+|...|++...+..|+|+++||+..+++++
T Consensus 81 Kf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~ 160 (448)
T COG2271 81 KFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNT 160 (448)
T ss_pred HHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--HHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcH
Q 043264 176 FFWSGVAGASWIN--YFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252 (435)
Q Consensus 176 ~~~~g~~~~~~l~--~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 252 (435)
+-++|..+.|++. +.+..+. +||..|++.++++++..+.. +..+|+|+- .+- +..
T Consensus 161 shNiGGal~~~~~~la~~~~~~---~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GL----------------P~i 218 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFHG---GWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGL----------------PPI 218 (448)
T ss_pred hhhcccchHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCC----------------CCH
Confidence 9999999999998 7776654 59999999999988877664 458888851 111 111
Q ss_pred HHHHHHHHHH-HHhhhhccccHhhhh-ccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHH
Q 043264 253 NELKYLIKYN-EDMRIASETPYKMLL-ERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQS 329 (435)
Q Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~ 329 (435)
+|.++...+. +++++.+..+.++++ +...+++.++.+.+........-+.+..|.|.|+. ..|++..++....+..=
T Consensus 219 e~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE 298 (448)
T COG2271 219 EEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFE 298 (448)
T ss_pred HHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1111111111 111111113334433 33344455555555555555557889999999985 58999999999999999
Q ss_pred HHHHHHHhhhHHHHhhh--cchHHHHHhH-HHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccc
Q 043264 330 TIFFVCLLLTGYLIDRV--GRRIMLIVGG-CQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWG 406 (435)
Q Consensus 330 ~~~~~~~~~~g~l~d~~--g~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (435)
.++++|++++|+++||+ |||....+.+ +...++.+.+... +..+.+...+++++.|+... +..
T Consensus 299 ~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------------~~~~~~l~~~~l~~iGf~Iy-GPq 364 (448)
T COG2271 299 VAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------------PNGSYLLDAILLFIIGFLIY-GPQ 364 (448)
T ss_pred HHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------------CCccHHHHHHHHHHHHHHHh-hHH
Confidence 99999999999999996 5665554333 3333333333321 33344555555555444432 222
Q ss_pred cccceeecccCChhhhhhhhHHHHhhhcC
Q 043264 407 PLPWILNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 407 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
-+.-..+.|..|.+.-|++.|+...++|+
T Consensus 365 mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl 393 (448)
T COG2271 365 MLIGLAAAEFVPKKAAGTATGFVGLFAYL 393 (448)
T ss_pred HHHHHHHhccccHhhccchhchhhhHHHH
Confidence 33345668999999999999999988875
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=262.78 Aligned_cols=342 Identities=19% Similarity=0.166 Sum_probs=254.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHH
Q 043264 21 PMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAG 100 (435)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g 100 (435)
+.+.+..++.+..+.+++|....+.. .|.+.+++ |.++.+.+++.+.+.++..+++++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA--APRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777778899998887754 36777776 89999999999999999999999999
Q ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHH
Q 043264 101 RLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSG 180 (435)
Q Consensus 101 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 180 (435)
+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHH
Q 043264 181 VAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLI 259 (435)
Q Consensus 181 ~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
..+++.++..+.+. .+||+.|++.++..++..+. ..++||+|++..++++.++ +
T Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~------- 206 (406)
T PRK11551 152 GALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ---------------R------- 206 (406)
T ss_pred HHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------------h-------
Confidence 99999998877664 45999998877665555443 4558998764221111000 0
Q ss_pred HHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhh
Q 043264 260 KYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLT 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
+...+..++++..++ ........+...........+.|.++++.|+++.+.+.......++.+++.++.
T Consensus 207 ----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T PRK11551 207 ----------APVLRALFGEGRATA-TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLI 275 (406)
T ss_pred ----------hhhHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 000011111111111 111111122222224456677888888899999999999999999999999999
Q ss_pred HHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCCh
Q 043264 340 GYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPI 419 (435)
Q Consensus 340 g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 419 (435)
|++.||++||+.+..+.....++.+.+... ++.+...+..++.+.+.... .+....+..|.+|+
T Consensus 276 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~ 339 (406)
T PRK11551 276 GALMDRLRPRRVVLLIYAGILASLAALAAA---------------PSFAGMLLAGFAAGLFVVGG-QSVLYALAPLFYPT 339 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---------------CcHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcch
Confidence 999999999998887665555554433321 22333334444444444333 34445677899999
Q ss_pred hhhhhhhHHHHhhhc
Q 043264 420 EVRSAGQGLSTAISF 434 (435)
Q Consensus 420 ~~r~~~~~~~~~~~~ 434 (435)
++|+++.|+.+++++
T Consensus 340 ~~~g~~~g~~~~~~~ 354 (406)
T PRK11551 340 QVRGTGVGAAVAVGR 354 (406)
T ss_pred hhhhhhhhHHHHhhh
Confidence 999999999987754
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=262.86 Aligned_cols=346 Identities=16% Similarity=0.180 Sum_probs=233.7
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccchH-HHHhhccchhhhcccccccCcccccccchhhHHH-----HHHHHHHHHHHH
Q 043264 24 IICIAVASAGLMYGYDIGINGGITKAES-FLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYN-----SSLYIAGIFSAL 97 (435)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~~~~~i~~~ 97 (435)
.......++.+.++||..+++... |. +.++++|+ .++. .+++. ++.+++..++++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~g~~ 82 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFPQ----------------VSPA-MGTLAAFATFGVGFLFRPLGGV 82 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------------CCcH-HHHHHHHHHHHHHHHHHhhHHH
Confidence 455566677899999999887542 33 33445442 2333 34433 456677889999
Q ss_pred hHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh--------HHHHHHhhhhccccccccccchhhhcccCCCCcchh
Q 043264 98 MAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG--------MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAI 169 (435)
Q Consensus 98 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 169 (435)
+.|+++||+|||+++.++.++++++++++++++|++ .+++.|+++|++.|...+....++.|++|+++|++.
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~ 162 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY 162 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence 999999999999999999999999999999999987 588999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHH
Q 043264 170 GTGFQIFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQV 244 (435)
Q Consensus 170 ~~~~~~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~ 244 (435)
.+..+.+..+|.+++..+...+.... .+++||++|++.+++.++........||+|+|...+++.++
T Consensus 163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~-------- 234 (438)
T PRK09952 163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA-------- 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc--------
Confidence 99999999999999887776665432 13689999999888766655445568898865322111000
Q ss_pred hCCCcCcHHHHHHHHHHHHHhhhhccccHhh-hhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchH
Q 043264 245 RGTKFDSENELKYLIKYNEDMRIASETPYKM-LLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVF 322 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~ 322 (435)
. +++.+..+ +.+++. .+.......+......+....|.|.+++ ..|++.....
T Consensus 235 ---------------------~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~ 289 (438)
T PRK09952 235 ---------------------A-KKRIPVIEALLRHPG---AFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL 289 (438)
T ss_pred ---------------------c-cccCCHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 0 00111111 222221 1222222222222234556667777764 5787776555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhh
Q 043264 323 PILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMA 402 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
......++...++.++.|+++||+|||+.+..+.++..++...+..... ..+..+..+...++.+++.+
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 358 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-----------AQSIFWIVFFSIMLANIAHD 358 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-----------cCChHHHHHHHHHHHHHHHH
Confidence 5555667778888899999999999999888776655544333322211 11222333333444445544
Q ss_pred hccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 403 LSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 403 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.... ..+.+..|.+|++.|+++.|+.+.++
T Consensus 359 ~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~ 388 (438)
T PRK09952 359 MVVC-VQQPMFTEMFGASYRYSGAGVGYQVA 388 (438)
T ss_pred HHHH-HHHHHHHHHCCcchhHHHHhHHHHHH
Confidence 4433 33577899999999999998876543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=248.01 Aligned_cols=329 Identities=20% Similarity=0.197 Sum_probs=254.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHH
Q 043264 22 MLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGR 101 (435)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~ 101 (435)
.+...+...++.|..+.+..+.... +|++.+++ |+|..+.|++.+.|.++..++.|+...
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gL--Lp~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~~ 70 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGL--LPPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLAL 70 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhc--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666678888888887755 48888888 999999999999999999999999999
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHH
Q 043264 102 LTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGV 181 (435)
Q Consensus 102 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 181 (435)
+.||+.||++++..+.++.++.+++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHH
Q 043264 182 AGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIK 260 (435)
Q Consensus 182 ~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
++|.+++.++.+..+ ||..|++.+.++++..+.. ..+| |+
T Consensus 151 v~GvPLGt~ig~~~G---WR~~F~~ia~l~ll~~~~~~~~lP--~~---------------------------------- 191 (394)
T COG2814 151 VLGVPLGTFLGQLFG---WRATFLAIAVLALLALLLLWKLLP--PS---------------------------------- 191 (394)
T ss_pred HHhccHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhCC--Cc----------------------------------
Confidence 999999999999755 9999999999988887764 5588 21
Q ss_pred HHHHhhhhcccc---HhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHH
Q 043264 261 YNEDMRIASETP---YKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCL 336 (435)
Q Consensus 261 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~ 336 (435)
+.+++.+.+ ..+.++++.. +.. .+..+..+.+.+....|...++ +..|++....++.+..++++.++|+
T Consensus 192 ---~~~~~~~~~~~~~~~~l~~p~v---~~~-l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn 264 (394)
T COG2814 192 ---EISGSLPGPLRTLLRLLRRPGV---LLG-LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN 264 (394)
T ss_pred ---cCCCCCCcchhHHHHHhcCchH---HHH-HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH
Confidence 000011122 2233333322 222 2223333444555555555555 5689999999999999999999999
Q ss_pred hhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeeccc
Q 043264 337 LLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEI 416 (435)
Q Consensus 337 ~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 416 (435)
.++|++.|| +.|+.+.....+..+..+.+.+. .++.+...+...++++.......... ....+
T Consensus 265 ~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--------------~~~~~~~~~~~~~wg~a~~~~~~~~~-~~~a~- 327 (394)
T COG2814 265 LLGGRLADR-GPRRALIAALLLLALALLALTFT--------------GASPALALALLFLWGFAFSPALQGLQ-TRLAR- 327 (394)
T ss_pred HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--------------cchHHHHHHHHHHHHHHhhhhhhHHH-HHhcc-
Confidence 999999999 88888888777777777766553 23445555555665555554433332 33344
Q ss_pred CChhhhhhhhHHHHhhh
Q 043264 417 LPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 417 ~p~~~r~~~~~~~~~~~ 433 (435)
.-++.++.+.+++....
T Consensus 328 ~~p~~~~~a~sl~~aa~ 344 (394)
T COG2814 328 LAPDAADLAGSLNVAAF 344 (394)
T ss_pred cCCCchHHHHHHHHHHH
Confidence 33578888888877654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=262.87 Aligned_cols=349 Identities=19% Similarity=0.174 Sum_probs=246.4
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhh
Q 043264 24 IICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLT 103 (435)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~ 103 (435)
...+.+.++.+.++++.....+. .|.+.+++ |+++.+.+++.+++.++..+++++.|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~ 77 (426)
T PRK12307 18 NALFSAWLGYVFDGFDFMLIFYI--MYLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALFGLLA 77 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556667888888777544 35666666 89999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHH
Q 043264 104 TSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAG 183 (435)
Q Consensus 104 dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 183 (435)
||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++
T Consensus 78 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 78 DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII 157 (426)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHH
Q 043264 184 ASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNE 263 (435)
Q Consensus 184 ~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (435)
++.+.+.+.+. .+||+.|++..+..++........||++++..++.+. ++... +
T Consensus 158 ~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~-----------~ 211 (426)
T PRK12307 158 AAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS-----------Q 211 (426)
T ss_pred HHHHHHHHccc---CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc-----------c
Confidence 99988888765 4599999886554444333333356665432111000 00000 0
Q ss_pred HhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHH
Q 043264 264 DMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLI 343 (435)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 343 (435)
...+..+.++++.++++..+........ .+...........+.|.++++.|.++.+.+.......++.++++++.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~ 290 (426)
T PRK12307 212 SAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCA 290 (426)
T ss_pred cchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011234555554443332222222 222222233456678888888899888888888999999999999999999
Q ss_pred hhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhh-hccccccceeecccCChhhh
Q 043264 344 DRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMA-LSWGPLPWILNCEILPIEVR 422 (435)
Q Consensus 344 d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r 422 (435)
||++||+.+..+.....+..+.+... +..... ....++++.++. .+..+....++.|.+|++.|
T Consensus 291 dr~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 355 (426)
T PRK12307 291 DRIGLKKTFSIGLLMSFLFIFPLFRI-------------PQDNYL--LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR 355 (426)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHH-------------ccccHH--HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence 99999998887776665544433321 111111 122223332221 12223334566899999999
Q ss_pred hhhhHHHHhhhc
Q 043264 423 SAGQGLSTAISF 434 (435)
Q Consensus 423 ~~~~~~~~~~~~ 434 (435)
++++|+.+.+++
T Consensus 356 g~~~g~~~~~~~ 367 (426)
T PRK12307 356 GLGTGLIYNLAA 367 (426)
T ss_pred hhhhhHHHHHHh
Confidence 999999877654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=257.48 Aligned_cols=367 Identities=20% Similarity=0.237 Sum_probs=255.6
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhh
Q 043264 24 IICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLT 103 (435)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~ 103 (435)
.......+..+..+++....+.. .|.+.+++ |.++.+.+++.+.+.++..++.++.|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 76 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMGFA--APAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFFGPLA 76 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444456666666655533 35555555 88999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHH
Q 043264 104 TSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAG 183 (435)
Q Consensus 104 dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 183 (435)
||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+
T Consensus 77 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 156 (398)
T TIGR00895 77 DRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV 156 (398)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHH-HhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHH
Q 043264 184 ASWINYFIMSSLNFKRWRIAVSVSGFPATLMTI-IAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYN 262 (435)
Q Consensus 184 ~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
++.+++.+.+.. +||+.+++.++..++..+ ...++||++++..++ +.++.++..++......+.+++ +..++
T Consensus 157 ~~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 229 (398)
T TIGR00895 157 GGFLAGWLIPVF---GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQ- 229 (398)
T ss_pred HHHHHHHHhhcc---cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccccc-
Confidence 999999887754 599999888655554443 456689988766554 3344333333322111000000 00000
Q ss_pred HHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHH
Q 043264 263 EDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYL 342 (435)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 342 (435)
+++++..+...+.+++++..+.. ....+..+...........+.|.+.++.|.++.+.+.......++.+++.++.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARIT-VLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL 308 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111112223333222222 22222223333345566778887778889999899999999999999999999999
Q ss_pred HhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhh
Q 043264 343 IDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVR 422 (435)
Q Consensus 343 ~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 422 (435)
.||+++|+... +.....+...++.... .+.+...+..++.+.+.+.... ....+..|.+|++.|
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 372 (398)
T TIGR00895 309 ADRLGPRVTAL-LLLLGAVFAVLVGSTL--------------FSPTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIR 372 (398)
T ss_pred HhhcchHHHHH-HHHHHHHHHHHHHHHh--------------hCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHH
Confidence 99999984443 3333333333332211 2334445556666666665543 446778999999999
Q ss_pred hhhhHHHHhhhc
Q 043264 423 SAGQGLSTAISF 434 (435)
Q Consensus 423 ~~~~~~~~~~~~ 434 (435)
+++.|+.+++++
T Consensus 373 g~~~g~~~~~~~ 384 (398)
T TIGR00895 373 ATGVGWAIGIGR 384 (398)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=267.16 Aligned_cols=362 Identities=13% Similarity=0.071 Sum_probs=242.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHH
Q 043264 21 PMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAG 100 (435)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g 100 (435)
..+.+.....++.+....|...++.. .|.+.+++ |++..+.|++.+.+.+++.+++++.|
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~G 85 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLVG 85 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34545556666666777788777744 47777777 89999999999999999999999999
Q ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHH
Q 043264 101 RLTTSAGRKGALIIGGIIYLIGVSLHAL-----AVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQI 175 (435)
Q Consensus 101 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (435)
+++||+|||+++.++.++++++.++.++ ++|++.+++.|+++|++.+...+...++++|++|+++|++++++...
T Consensus 86 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~ 165 (467)
T PRK09556 86 YYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNI 165 (467)
T ss_pred hHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeec
Confidence 9999999999999888888777766554 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHH
Q 043264 176 FFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE 254 (435)
Q Consensus 176 ~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (435)
+.++|.++++.+...+.+.....+||..|.+.+++.++..+.. ++.+|+|+.. +..++ ++. .. +. ..++
T Consensus 166 ~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~~-~~--~~~~ 235 (467)
T PRK09556 166 SHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---FG-EP--ISEE 235 (467)
T ss_pred ccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---cc-Cc--cchh
Confidence 9999999999988776654211359998888777766655443 4467766421 11000 000 00 00 0000
Q ss_pred HHHHHHHHHHhhhhccccHhhhh-ccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHH
Q 043264 255 LKYLIKYNEDMRIASETPYKMLL-ERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIF 332 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~ 332 (435)
.++.+ +++.+.++.+ +...+.+.++...+..++..........|.|.+++ +.|++..+++.......++.
T Consensus 236 -------~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 236 -------DKETE-STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred -------hhccc-cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 00000 0011111111 10111222333333333333334567788998875 58999999999999899999
Q ss_pred HHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccccee
Q 043264 333 FVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWIL 412 (435)
Q Consensus 333 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (435)
+++.++.|+++||++||+..........++...+... ...+.+...+..++.+.+......+. ...
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~ 373 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-------------HATSEYMYLASLFALGFLVFGPQLLI-GVA 373 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHHHHhhHHHHH-HHH
Confidence 9999999999999999887665444333332222211 11223333334444443221111111 245
Q ss_pred ecccCChhhhhhhhHHHHhhhc
Q 043264 413 NCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 413 ~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..|.+|++.|+++.|+.++.++
T Consensus 374 ~~~~~p~~~~g~a~gi~~~~g~ 395 (467)
T PRK09556 374 AVGFVPKKAIGVANGIKGTFAY 395 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHH
Confidence 5699999999999999988765
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=264.16 Aligned_cols=369 Identities=12% Similarity=0.034 Sum_probs=263.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHH
Q 043264 22 MLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGR 101 (435)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~ 101 (435)
.+.....++++.++...|..+++.. +|++.+++ |.+.++.+|+.+.+.++..++.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888889999999998854 58888887 889999999999999999999999999
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhccc-CCCCcchhhhHHHHHHHHH
Q 043264 102 LTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMA-PTKWRGAIGTGFQIFFWSG 180 (435)
Q Consensus 102 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g 180 (435)
++||+|||+++..+.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.++......+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888776765 6789999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHH------------HHHHhCC
Q 043264 181 VAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKS------------LNQVRGT 247 (435)
Q Consensus 181 ~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~------------~~~~~~~ 247 (435)
..+||.+++.+.+.. +||+.|++...+.++..+. .+++||+|+. .+++.|..... +......
T Consensus 144 ~~~gp~lgg~l~~~~---gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~ 218 (495)
T PRK14995 144 AAFGPLVGGILLEHF---YWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKG 218 (495)
T ss_pred HHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhcccc
Confidence 999999999998864 5999999988776665544 4557876531 11111111100 0000000
Q ss_pred CcCcHHHHHH-------HHHHHHHhhhhccccH--hhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCC
Q 043264 248 KFDSENELKY-------LIKYNEDMRIASETPY--KMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIR 317 (435)
Q Consensus 248 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s 317 (435)
..+....... .......+.+ .+.+. .++++++.... ..+..+...........+.|.+++. .|++
T Consensus 219 ~~~~~~~~~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 219 FLSLWVTSLTLLTGALLLGLFIRTQLA-ASRPMIDMRLFTHRIILS----GVVMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhCCcccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0000000000 0000000111 11121 23444433222 2222222222244556677877765 7999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHH
Q 043264 318 LKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFL 397 (435)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (435)
+.+++....+..++..++.++.|++.||+|+|+.+..+..+.+++...+.... ...+.+......++.
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~------------~~~~~~~~~~~~~l~ 361 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD------------FSTQQWQAWGLMALL 361 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc------------CCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999988888777766665554321 223334445566777
Q ss_pred HHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 398 GVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 398 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
+++.+....+.. ....+..|+++++.+.++.++..
T Consensus 362 G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 396 (495)
T PRK14995 362 GFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAY 396 (495)
T ss_pred HHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHH
Confidence 777776655553 45568899999999999987754
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=252.69 Aligned_cols=340 Identities=20% Similarity=0.236 Sum_probs=225.8
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHH-HHHH-----HHHHHHHHHh
Q 043264 25 ICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAY-NSSL-----YIAGIFSALM 98 (435)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~~~~i~~~~ 98 (435)
......++.+++++|...++... |.+.+++ +.++.+.+.. .+.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYA--TAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45666678899999999988554 7777777 5666655433 2222 3333578999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh--------HHHHHHhhhhccccccccccchhhhcccCCCCcchhh
Q 043264 99 AGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG--------MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIG 170 (435)
Q Consensus 99 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 170 (435)
.|+++||+|||+.++.+.+++.+++++++++++++ .++++|+++|++.+...+....+++|++|+++|++++
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999987 4689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHh
Q 043264 171 TGFQIFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVR 245 (435)
Q Consensus 171 ~~~~~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~ 245 (435)
++...+.++|..+++.++..+.... ++.+||+.|++..+...+........||++++..+
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~--------------- 220 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLAR--------------- 220 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh---------------
Confidence 9999988888888888877764321 23679999987654433222222234443221000
Q ss_pred CCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHH
Q 043264 246 GTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPI 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 324 (435)
+++.+.+..+++..++ ++.+.......+...........|.|.++++ .|++..+.+..
T Consensus 221 ------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~ 279 (434)
T PRK15075 221 ------------------KHRPSMREIFRSLAAN---WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLV 279 (434)
T ss_pred ------------------hhccccccHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0000001111111111 1112222222222333456677889998875 79998888888
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhc
Q 043264 325 LIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALS 404 (435)
Q Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (435)
.....++.+++.++.|++.||++||+.+..+.....+.......... .............+.+++++..
T Consensus 280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~~ 348 (434)
T PRK15075 280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-----------AAPSFARMLAVELWLSFLYGSY 348 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----------cCCchHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999877655443322211111110 1111112222233333444433
Q ss_pred cccccceeecccCChhhhhhhhHHHHhh
Q 043264 405 WGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 405 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
.+..+.+..|.+|++.|+++.++.+.+
T Consensus 349 -~~~~~~~~~e~~p~~~rg~~~g~~~~~ 375 (434)
T PRK15075 349 -NGAMVVALTEVMPAEVRTAGFSLAYSL 375 (434)
T ss_pred -HhhHHHHHHHHCCCCccchheeHHHHH
Confidence 233346678999999999999986543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=247.85 Aligned_cols=300 Identities=14% Similarity=0.019 Sum_probs=204.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|++.+++.|+++|++.+. .+...
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~ 100 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAF 100 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHH
Confidence 99999999999999999999999999999999999887666555545443333347999999999999999986 45666
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
..++|++|+++|++++++.+.+..+|.+++++++..+.+. .+||+.|++.++++++..+. .+++||+|++. ++
T Consensus 101 ~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~ 174 (368)
T TIGR00903 101 APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AE 174 (368)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CC
Confidence 6679999999999999999999999999999999999875 46999999977776665554 45689988641 00
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
. .+. ++ . .++++++++++.. +...+..++.....+.+..|.|.++++
T Consensus 175 ~----------------~~~--~~-------~----~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~wlp~~L~~ 221 (368)
T TIGR00903 175 G----------------FGF--KD-------A----VKEFGALAGRKDL----WIIGAILGFGVALFDNLAIWLEAALRP 221 (368)
T ss_pred C----------------cch--HH-------H----HHHHHHHHcChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 00 0 0124555554433 333333444444566778899999988
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch---HHHHH-hHHHHHHHHHHHHHHHHhhccCCCCccccchhhHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR---IMLIV-GGCQIFICQVILAILMASESRSHGTSIFSKRSAFV 389 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
.|++.. .+.......+.+.++ .+++.||..|| +.... .....++....+.. . .+.+.
T Consensus 222 ~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~--------------~-~~~~~ 282 (368)
T TIGR00903 222 AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF--------------E-LNRLA 282 (368)
T ss_pred CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------------c-cccHH
Confidence 888754 455555555544444 46777776543 33222 22222222222221 1 11223
Q ss_pred HHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 390 ALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
......+.+++..... +..+.+.+|.+|++.|+++.|+.+..++
T Consensus 283 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~p~~~rgt~~G~~~~~g~ 326 (368)
T TIGR00903 283 LFAFIGIAGLLMLPAY-AIIMDWIGKFCDKELHGKAAGAIGFTSR 326 (368)
T ss_pred HHHHHHHHHHhhhhhH-HHHHHHHHHhcchhhcCcccchhhHHHH
Confidence 3333333443333332 3345788999999999999999998875
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=247.61 Aligned_cols=297 Identities=15% Similarity=0.124 Sum_probs=217.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~ 119 (390)
T PRK03545 40 HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITA 119 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.+++.++..+. ...+||+|+ +++
T Consensus 120 ~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~---gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~ 192 (390)
T PRK03545 120 SLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL---GWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS 192 (390)
T ss_pred HHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh---cHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc
Confidence 99999999999999999999999999999999999988754 5999999988877766544 334666542 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT- 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (435)
++ .++.++.++++..+.......+... .......+.+.+++
T Consensus 193 -------------------~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~ 234 (390)
T PRK03545 193 -------------------GS---------------LKSLPLLFRRPALVSLYLLTVVVVT----AHFTAYSYIEPFVQQ 234 (390)
T ss_pred -------------------ch---------------HHHHHHHHhCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 00 0112334444332222222221111 12223345555554
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..|.+..+.+.......++.++++++.+++.||+++|... .+..+..++...+... .++.+...+
T Consensus 235 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~--------------~~~~~~~~~ 299 (390)
T PRK03545 235 VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA--------------ANSEWHLSV 299 (390)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH--------------hchHHHHHH
Confidence 4789999899999999999999999999999999987643 4444444433332221 123444455
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
..++.+.+.... .+.......|..| +.|++++|+.+...
T Consensus 300 ~~~l~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 338 (390)
T PRK03545 300 LSIFWGIAIMCI-GLAMQVKVLKLAP-DATDVAMALFSGIF 338 (390)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 555666654333 2333355567766 68899999877653
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=253.25 Aligned_cols=359 Identities=14% Similarity=0.084 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
+.++.+.....++.+...++....+.. .|.+.+++ |+|..+.+++.+.+.+++.+++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~ 78 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAA--MPEMLADL------------------GLSRSDIGLLATLFYITYGVSKFVS 78 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444445555566666666555433 46666666 8999999999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHH
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWS 179 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (435)
|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++
T Consensus 79 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 158 (434)
T PRK11663 79 GIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV 158 (434)
T ss_pred hHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHH
Q 043264 180 GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYL 258 (435)
Q Consensus 180 g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (435)
|..+++.+.+.+.+. .+||+.|.+.+++.++..+. .+++||+|++...+...++.+ +.+ +
T Consensus 159 g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~---~-- 219 (434)
T PRK11663 159 GGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DAL---E-- 219 (434)
T ss_pred HHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------ccc---c--
Confidence 999999999998875 45999999888776655433 456788875321111000000 000 0
Q ss_pred HHHHHHhhhhccccHhhhhcc-CchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHH
Q 043264 259 IKYNEDMRIASETPYKMLLER-KYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCL 336 (435)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~ 336 (435)
.+++++.++.+.++.+++ ..+.+.++...+..+...........|.|.++ ++.|++..+++.......++..+++
T Consensus 220 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~ 296 (434)
T PRK11663 220 ---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA 296 (434)
T ss_pred ---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000001122222210 11112222222222332233455667888888 4579999999999999999999999
Q ss_pred hhhHHHHhhh--cchHHH-HHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceee
Q 043264 337 LLTGYLIDRV--GRRIML-IVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILN 413 (435)
Q Consensus 337 ~~~g~l~d~~--g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (435)
++.|++.||+ ++|+.. ........+....+... +..+........+..+.+. ...........
T Consensus 297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 362 (434)
T PRK11663 297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-------------PFASYVMQAACFFTIGFFV-FGPQMLIGMAA 362 (434)
T ss_pred HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-------------ccccHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 9999999998 333332 22212222221111111 1112222222222222211 11111223455
Q ss_pred cccCChhhhhhhhHHHHhhhc
Q 043264 414 CEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 414 ~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.|.+|++.|+++.|+.++.++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~ 383 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAY 383 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHH
Confidence 799999999999999988765
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-30 Score=249.52 Aligned_cols=378 Identities=15% Similarity=0.120 Sum_probs=249.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
++.+.....+.++.+.++++....++. .|.+.+++ |+++.+.+++.+.+.+++.+++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~ 75 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEF------------------GLTTVQAASLISAAFISRWFGGLLL 75 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667778888888877644 36666666 8999999999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHH
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWS 179 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 179 (435)
|+++||+|||+++..+.++..++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+
T Consensus 76 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 155 (496)
T PRK03893 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI 155 (496)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHH
Q 043264 180 GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLI 259 (435)
Q Consensus 180 g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
|..+++.+.+.+.+. .+||+.|.+..+..++..+....+||++++..++++.++.++..+.....+...........
T Consensus 156 g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (496)
T PRK03893 156 GAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLA 232 (496)
T ss_pred HHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHH
Confidence 999999999988775 45999998866555544444556788776533222211111111111000000000000000
Q ss_pred H---HHHHhhhhccccH-------------hhh-h-ccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCc
Q 043264 260 K---YNEDMRIASETPY-------------KML-L-ERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKD 320 (435)
Q Consensus 260 ~---~~~~~~~~~~~~~-------------~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~ 320 (435)
. ....-.......+ ... . ....+++.........+..+........+.|.+++ +.|++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~ 312 (496)
T PRK03893 233 AAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHT 312 (496)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHH
Confidence 0 0000000000000 000 0 01111121222222222222212235567888884 78999999
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHH
Q 043264 321 VFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVG 400 (435)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (435)
.+...+...++.+++.++.|++.||++||+.+..+..+..+..+.+... .....+......++.+.
T Consensus 313 ~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~- 378 (496)
T PRK03893 313 VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-------------GGANVWVLGLLLFFQQM- 378 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-------------cccHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999998877765555444333221 11222222222222222
Q ss_pred hhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 401 MALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 401 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+.+..+....+..|.+|++.|++++|+.++.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 412 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGA 412 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhh
Confidence 2222233444677899999999999998876643
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=251.36 Aligned_cols=367 Identities=16% Similarity=0.138 Sum_probs=259.9
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhh
Q 043264 26 CIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS 105 (435)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr 105 (435)
...+.++.++..+|..+.+.. .|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344556668888888887744 46776666 8899999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHH
Q 043264 106 AGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGAS 185 (435)
Q Consensus 106 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 185 (435)
+|||+++.++.++..++++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.++...+..+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHH--------HHH--HhCCCcC--cH
Q 043264 186 WINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKS--------LNQ--VRGTKFD--SE 252 (435)
Q Consensus 186 ~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~--------~~~--~~~~~~~--~~ 252 (435)
.+++.+.+. .+||+.|++.+++.++..+.. +..||+++. .+++.|..... ... ..+.+.+ .+
T Consensus 144 ~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (485)
T TIGR00711 144 TLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDS 218 (485)
T ss_pred ccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence 999999875 459999999887776665543 446765431 12222221110 000 0111111 11
Q ss_pred HHHHHH---------HHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchH
Q 043264 253 NELKYL---------IKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVF 322 (435)
Q Consensus 253 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 322 (435)
.+.... .....+.+++++....+.++++......+...+. .........+.|.++++ .|+++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 219 NEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLL----GLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 110000 0000111111111112344444333322222222 22244556678888765 799999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhh
Q 043264 323 PILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMA 402 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
.......++.+++.++.|++.||++||+.+..+..+.+++...+..... +..+.+.......+.+++.+
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~g~~ 363 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-----------PDTPFLAIALPQFIRGFGMG 363 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887777777665542211 22334445555666777776
Q ss_pred hccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 403 LSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 403 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
....+.. ....+..|+++|+++.|+.++..
T Consensus 364 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 393 (485)
T TIGR00711 364 CFFMPLT-TIALSGLPPHKIARGSSLSNFTR 393 (485)
T ss_pred HHHHHHH-HHHHhcCCHHHHhHHHHHHHHHH
Confidence 6655554 34467889999999999988764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-31 Score=246.45 Aligned_cols=330 Identities=17% Similarity=0.178 Sum_probs=225.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++..++++++|++.+++.|++.|++.+...+...
T Consensus 25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 104 (399)
T TIGR00893 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGII 104 (399)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~ 233 (435)
.++.|++|+++|+++.++.+...++|..+++.+++.+.+.. +||+.|.+.+++.++..+.. +..||+|+.. +..
T Consensus 105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 179 (399)
T TIGR00893 105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWL 179 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccC
Confidence 99999999999999999999999999999999999887754 59999998887777665554 4466665311 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT- 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (435)
.++.++... +...++ .+.+++++.++...++.++++. +....+..+...........+.|.+++
T Consensus 180 ~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (399)
T TIGR00893 180 TEEEKYIVV---------GGLLAE--QQGKGPSTPKKYQIKELLKDRR----VWGLALGQFLVNIGLGFFLTWFPTYLVQ 244 (399)
T ss_pred CHHHHhhcc---------hhhccc--cccccccCCCccchHHHhcCHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111000000 000000 0001111111233444444322 222333333333345566677787775
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHH-HHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIML-IVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVAL 391 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
..|.++.+.+.......++.+++.++.+++.||++||+.. ........++.+......... . ..+..+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~ 316 (399)
T TIGR00893 245 ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N-------YVNIPYAAL 316 (399)
T ss_pred HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c-------cchhHHHHH
Confidence 5788888889999999999999999999999999998621 111111111111111110000 0 112222222
Q ss_pred HHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 392 ILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
....+...+. +..+..+.+..|.+|++.|+++.|+.+.+..
T Consensus 317 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (399)
T TIGR00893 317 ALVALGFFGL--GAGAIGWALISDNAPGNIAGLTGGLINSLGN 357 (399)
T ss_pred HHHHHHHhch--hhhhHHHHHHHhhcChhHHHHHHHHHHHHHH
Confidence 2222222222 2455667888999999999999999987754
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=238.64 Aligned_cols=298 Identities=12% Similarity=0.082 Sum_probs=217.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...+...
T Consensus 40 ~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~ 119 (393)
T PRK09705 40 GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMP 119 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC-CCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI-PDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pesp~~l~~~~~ 233 (435)
.++.|++| ++|+++++.+..+...|..+++.+++.+.++. .+||+.+.+.++..++..+..+.. ++.|+
T Consensus 120 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 189 (393)
T PRK09705 120 SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVA------- 189 (393)
T ss_pred HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------
Confidence 99999996 78999999999999999999999998887753 259998876665544433322222 11110
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
+ ++++ +...++.++++ +.+ ...+..+....++.....+.|.++++
T Consensus 190 --~----------------------------~~~~-~~~~~~~l~~~---~~~-~l~~~~~~~~~~~~~~~~~lp~~l~~ 234 (393)
T PRK09705 190 --S----------------------------SHKT-TTTPVRVVFTP---RAW-TLGVYFGLINGGYASLIAWLPAFYIE 234 (393)
T ss_pred --c----------------------------ccCC-CcCCcccccCH---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00111122221 111 12222222233455677788888888
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALIL 393 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.|.+..+++....+..++.++++++.+++.||++||+....+..+..++...+... +.... .. .
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~-~~--~ 298 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-------------PLQLP-VL--W 298 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-------------cchHH-HH--H
Confidence 99999999999999999999999999999999999998888777666665544322 11111 11 1
Q ss_pred HHHHHHHhhhccccccceeecccC-ChhhhhhhhHHHHhhhc
Q 043264 394 RCFLGVGMALSWGPLPWILNCEIL-PIEVRSAGQGLSTAISF 434 (435)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ 434 (435)
..+.+.+.+.... .......+.. |+++|+++.|+.+.+++
T Consensus 299 ~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 339 (393)
T PRK09705 299 AMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGF 339 (393)
T ss_pred HHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 2334444444333 3333344555 57889999998887764
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=242.96 Aligned_cols=307 Identities=17% Similarity=0.077 Sum_probs=221.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.+...+...
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIAL 113 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~ 233 (435)
..+.|++| ++|+++.++...+.++|..+++++...+.+. .+||+.|++.+++.++..+.. ++++|+|+. +.+
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 186 (377)
T TIGR00890 114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL---EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ---LIK 186 (377)
T ss_pred HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHheecCchh---ccc
Confidence 88899886 6799999999999999988776666666553 469999999888877766554 345554420 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
. ++ + .++++.+.++.++++..+......... .........+.+.+.++
T Consensus 187 ~------------~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 234 (377)
T TIGR00890 187 T------------NI-E---------------VSVKDYTVWEMLRTPQFWVLYLSFFLN----AVSGLLLIGLYKPYGQS 234 (377)
T ss_pred c------------Cc-c---------------cchhhhhHHHHHcCccHHHHHHHHHHH----hHHHHHHHHHHHHHHHH
Confidence 0 00 0 000011223344433332222221111 11122333445556677
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALIL 393 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.|.+..+.+.......+..++++++.+++.||++||+.+..+.....++.+.+... +....+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 301 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-------------PMLNDVLFLAT 301 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-------------ccchhHHHHHH
Confidence 88888788888999999999999999999999999999888877777776655432 11122223333
Q ss_pred HHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 394 RCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+.+.+.+.... ....+..|.+|+++|+++.|+.+....
T Consensus 302 ~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ 341 (377)
T TIGR00890 302 VALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKA 341 (377)
T ss_pred HHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 4444555444433 334567899999999999999887643
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=236.05 Aligned_cols=293 Identities=14% Similarity=0.131 Sum_probs=210.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...
T Consensus 51 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 130 (394)
T PRK10213 51 GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSA 130 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~ 233 (435)
+++.|++|+++|+++.++...+.++|..++|.+++.+.+.. +||+.|++.++++++..+.. ...||+|+. +
T Consensus 131 ~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~---gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~ 202 (394)
T PRK10213 131 SLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI---GWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P 202 (394)
T ss_pred HHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c
Confidence 99999999999999999999999999999999999998854 59999998877666554443 336765420 0
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHH-HHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVV-GQLIVT 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 312 (435)
+ +.+.+.++.++++..+..... .+....+......+ .|.+.+
T Consensus 203 -~--------------------------------~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~ 245 (394)
T PRK10213 203 -S--------------------------------HQKQNTFRLLQRPGVMAGMIA----IFMSFAGQFAFFTYIRPVYMN 245 (394)
T ss_pred -c--------------------------------cchhHHHHHhcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 0 000112233333222221111 11211222333344 477777
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+.|+++.+.+......+++.+++.++.+++.||.++ +.+..+..+..++.+.+... .++.+....
T Consensus 246 ~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~--------------~~~~~~~~~ 310 (394)
T PRK10213 246 LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLW--------------GSDKIVATG 310 (394)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHH
Confidence 789999989999999999999999999999999544 44333333333332222221 123455555
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
..++.+++++....+. ..++.+..|+ .++++.+..
T Consensus 311 ~~~l~G~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 345 (394)
T PRK10213 311 VAIIWGLTFALVPVGW-STWITRSLAD-QAEKAGSIQ 345 (394)
T ss_pred HHHHHHHHHHhhhHHH-HHHHHHHCcc-cHHHHHHHH
Confidence 6666777766554333 3455677774 344444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=234.98 Aligned_cols=387 Identities=22% Similarity=0.204 Sum_probs=271.5
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSA 96 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~ 96 (435)
..+|+......++..+.|.++||..+++.+. ++.+..|+...+. .-+.++...+.+..+..+|.++|+
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt---~il~~lY~~~~~~---------~g~~ps~i~~~Vn~~A~vGti~GQ 101 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVT---KILGYLYYHGDES---------GGHYPSGVLALVNAAALVGTIFGQ 101 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHH---HHHHHHhcCCCCC---------CCcCCchHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999998654 4554444443221 124677788899999999999999
Q ss_pred HhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccc-------hhHHHHHHhhhhccccccccccchhhhcccCCCCcchh
Q 043264 97 LMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN-------MGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAI 169 (435)
Q Consensus 97 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 169 (435)
++.|++.||+|||+++...+++..+++++++++.. ..++.+.|++.|+|.|+-+|...++.+|....++||..
T Consensus 102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~ 181 (538)
T KOG0252|consen 102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF 181 (538)
T ss_pred HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence 99999999999999999999999999998887632 37889999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcC----C--------CCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcC-CHHH
Q 043264 170 GTGFQIFFWSGVAGASWINYFIMSSL----N--------FKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRG-KVQQ 236 (435)
Q Consensus 170 ~~~~~~~~~~g~~~~~~l~~~l~~~~----~--------~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~-~~~~ 236 (435)
.+......+.|.+.|.+++..+...+ + +.-||..+.+.+++++..+...+.+|||++|..... +.+.
T Consensus 182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~ 261 (538)
T KOG0252|consen 182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ 261 (538)
T ss_pred eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh
Confidence 88877777777776666655543322 1 124999999999999999888899999999864333 2223
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhcccc---HhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 237 ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETP---YKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
|.+...+.... +.+++. +. +...+.++.+ +...+....- +.++.....++..-..++..+.+...+++.
T Consensus 262 a~~d~~k~~~~--~~~~~~----~~-~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 262 AAGDMKKVLSV--DIEAES----TA-ESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred hhhcccccccc--ccchhh----cc-ccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 32111111111 000000 00 1111111122 2222222222 345566666666555677788888888888
Q ss_pred cCCCCCchHH---------HHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 314 LGIRLKDVFP---------ILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 314 ~g~s~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.|+.+.+... ...+...+.++|..+...++|++||++....+++++.+..+.++...+ +.
T Consensus 334 ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~-----------~~ 402 (538)
T KOG0252|consen 334 IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN-----------QL 402 (538)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc-----------cc
Confidence 8886655433 223333444557777888999999999999999999988887776432 11
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.......++-.+..++...+.+.....+.+|.+|++.|++..|+..+.+.
T Consensus 403 ~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK 452 (538)
T KOG0252|consen 403 ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGK 452 (538)
T ss_pred cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhcc
Confidence 12223334444444555556566667888999999999999999887653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=237.66 Aligned_cols=310 Identities=15% Similarity=0.071 Sum_probs=231.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV-----NMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 149 (435)
+.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++..+.+ +++.+++.|+++|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999988888887 9999999999999999999
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc--CCCChhh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF--IPDTPSS 227 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~ 227 (435)
.+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+.. +||+.|++.++..++..+..+. .||+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL---GIKWAIWVDAVGFAISALLIVSVRIPELAA- 185 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhcccccCCC-
Confidence 9999999999999999999999999999999999999999998764 5999998887766655544333 333221
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
+++ ++ ..++.. ++.++.++..++++..+.......+... ........+.
T Consensus 186 ---~~~-~~-------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 234 (365)
T TIGR00900 186 ---SEI-QA-------------LSNAVL-----------RDTREGIKFVLKNPLLRTLLLLALLFNL---VFAPAIVALF 234 (365)
T ss_pred ---ccc-cc-------------cchhHH-----------HHHHhHHHHHHcCcHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 000 00 000000 0001223444444433332222222211 1122223677
Q ss_pred HHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 308 QLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 308 ~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
|.+.++ .|.++.+.+.......++.+++.++.+++.||.+||+.+..+....+++...+... +. +
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~ 300 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-------------PP-N 300 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-------------ch-h
Confidence 887765 78999899999999999999999999999999999998887766666665554432 11 2
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+...+..++.+++.+... +....+..|.+|++.|+++.|+.++..+
T Consensus 301 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 347 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPIN-VPQGTLLQRRVPAELLGRVFGAQFSLSH 347 (365)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4555666667777666553 4445777899999999999999988754
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=244.72 Aligned_cols=334 Identities=19% Similarity=0.235 Sum_probs=249.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.++.++++|++.+++.|+++|++.++.....
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGK 233 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~ 233 (435)
..++.|++++++|+.+..+ ......+..+++..++++.. +||+.+++..++.++.++..++.||+|||+..+++
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~ 266 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR 266 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc
Confidence 9999999999999999999 66666666667767666655 49999999999999888776677899999999999
Q ss_pred HHHHHHHHHHHhCCC---cCcHHHHHHHH--HHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHH-
Q 043264 234 VQQALKSLNQVRGTK---FDSENELKYLI--KYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG- 307 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (435)
.+++.+.++++.+.+ .+.++..+... +..+....+++..+.++++.+..++..+...+..+. ....++.
T Consensus 267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-----~~~~y~gl 341 (521)
T KOG0255|consen 267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-----FSLVYYGL 341 (521)
T ss_pred hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-----HhHHHHhh
Confidence 999999999987543 22222222221 111111122235577777655322222322222221 1122222
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhh
Q 043264 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSA 387 (435)
Q Consensus 308 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
+......|. .........+.....+....+...|++|||.....+..+..++++..++... ....
T Consensus 342 ~~~~~~lg~---~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 406 (521)
T KOG0255|consen 342 SLNVSGLGG---NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD------------DLGG 406 (521)
T ss_pred hhhhhhcCc---hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc------------cchh
Confidence 222223332 2345556666688888888899999999999999999999999888887642 1111
Q ss_pred HHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 388 FVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+...+...+..++.+.++... +.+..|++|+..|+.+.+.+++.+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~ 452 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAAR 452 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHH
Confidence 344444445555555555544 7888999999999999999988764
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-29 Score=233.04 Aligned_cols=308 Identities=16% Similarity=0.181 Sum_probs=228.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~ 233 (435)
+++.|++|+++|+++.++.+....+|..+++.+++.+.+.. +||+.+++.++..++..+.. +..||+++. +++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 189 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL---SWHAIFAFLSLAGILLSALIFFILPETLPY---EAR 189 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ccc
Confidence 99999999999999999999999999999999999888754 59999988877766655543 446765421 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT- 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (435)
+ +.+ +....+++.++++..+........ ..........+.|.+++
T Consensus 190 -~--------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR00710 190 -I--------------QIS---------------TYFETFLLLLKSKMFWGYALIYGA----SFGGFFAFFSGAPFVYID 235 (385)
T ss_pred -C--------------CHH---------------HHHHHHHHHHcCchhHHHHHHHHH----HHHHHHHHHHcChHHHHH
Confidence 0 000 001123333443333222222111 12223445556676664
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+.|.++.+.+.......++.+++.++.+++.||+++|+.+..+.....++..++...... ..........
T Consensus 236 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 305 (385)
T TIGR00710 236 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL----------GLGSWAMIIG 305 (385)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh----------ccchHHHHHH
Confidence 689999999999999999999999999999999999998888777777666555443210 1122233334
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
...+.+.+.+.... .......|..| +.|+++.++.++..+
T Consensus 306 ~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~ 345 (385)
T TIGR00710 306 PMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRL 345 (385)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHH
Confidence 44555555555433 33456678777 678999998877653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-31 Score=242.31 Aligned_cols=315 Identities=23% Similarity=0.322 Sum_probs=232.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|.++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+++|++.+++.|++.|++.+...+..
T Consensus 27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 106 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPAS 106 (352)
T ss_dssp STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccc
Confidence 38999999999999999999999999999999999999999999999997777777888899999999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRG 232 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~ 232 (435)
..++.|++|+++|+++.++.+.+.++|..+++.+++.+.+.. +||+.|++.++..++..++ ..+++++|+....++
T Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 183 (352)
T PF07690_consen 107 NALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---GWRWAFLISAILSLIAAILFILFLPEPPPPRERES 183 (352)
T ss_dssp HHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S
T ss_pred cccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---ccccccccccchhhhhhhhHhhhhhhccccccccc
Confidence 999999999999999999999999999999999999998654 4999999999888887664 344555442110000
Q ss_pred CHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccc-cHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-
Q 043264 233 KVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASET-PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI- 310 (435)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (435)
+.++ + ++++++.. .++.+++++..+..+...... .........+.|.+
T Consensus 184 ~~~~-----------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 233 (352)
T PF07690_consen 184 PKES-----------------E---------SKKPKPLKPGFKSLFKNPVLWILLIAFFLF----FFVFSGFSFFLPLYL 233 (352)
T ss_dssp STTT-----------------T-----------HHHCCCH-CTHHHHHHCCHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred cccc-----------------c---------cccccccccccccccccchhhhhhhhhhHH----HHHHHHhhcccchhh
Confidence 0000 0 00111111 244444443333122222222 11245577788887
Q ss_pred HHHcCCC-CCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHH
Q 043264 311 VTSLGIR-LKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFV 389 (435)
Q Consensus 311 ~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
.+..|.+ ..+.+.......+...++.++.+++.||+++|+..........+..+.+..... ..+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 301 (352)
T PF07690_consen 234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF------------SSSPVW 301 (352)
T ss_dssp CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH------------HCHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHH
Confidence 4668888 678888899999999999999999999999988777766666665555544321 123344
Q ss_pred HHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 390 ALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
......+.+.+.+.. .+....+..|.+|+++|+++.|+.+..+.
T Consensus 302 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 345 (352)
T PF07690_consen 302 LIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGS 345 (352)
T ss_dssp HHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455666677766655 44446788999999999999999987653
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=240.40 Aligned_cols=349 Identities=15% Similarity=0.053 Sum_probs=229.3
Q ss_pred hhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH
Q 043264 34 LMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI 113 (435)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~ 113 (435)
+...++....+.. .|.+.+++ |++..+.+++.+++.++..+++++.|+++||+|||+++.
T Consensus 5 ~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 64 (379)
T TIGR00881 5 AAYYLVRKNFALA--MPYLVEEI------------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLP 64 (379)
T ss_pred hHHHHhHHhhhhh--hHHHHHHh------------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhH
Confidence 3444555555433 36666666 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHHh
Q 043264 114 IGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGAS-WINYFIM 192 (435)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~l~ 192 (435)
.+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .++..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 65 IGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 4666665
Q ss_pred hcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccc
Q 043264 193 SSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASET 271 (435)
Q Consensus 193 ~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (435)
+. .+||+.|++.+++.++..+. .++.||+|+....+++.++ .+++.++.++..+++.+..+.
T Consensus 145 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 207 (379)
T TIGR00881 145 EL---YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM--------------PNEEPDGDAEKKEEELTKKQI 207 (379)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC--------------cccccccccccccccccchHH
Confidence 54 45999998888776665444 4557776642111000000 000000000000000011111
Q ss_pred cHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchH
Q 043264 272 PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRI 350 (435)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 350 (435)
..++.++++..+. ..+..+...........+.|.+++ ..|+++.+.+.......++.+++.++.+++.||..+|+
T Consensus 208 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 208 FLQYVLLNKVLWY----ISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred HHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 2333444333222 222222222224456667777774 57999999999999999999999999999999864332
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 351 MLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 351 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
...............+..... .+..+.+...+..++.+.... +..+....+..|.+|++.|+++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~ 352 (379)
T TIGR00881 284 RGPLAVFFMALIIVSLLVYWL----------NPAANPLMDLICLFALGFLVY-GPQMLIGVIASELAPKKAAGTAAGFVG 352 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhc----------CcchhHHHHHHHHHHHHHHHh-hhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 222221111111111111110 011223333333334443322 222333456789999999999999998
Q ss_pred hhhc
Q 043264 431 AISF 434 (435)
Q Consensus 431 ~~~~ 434 (435)
..+.
T Consensus 353 ~~~~ 356 (379)
T TIGR00881 353 FFAY 356 (379)
T ss_pred Hhhh
Confidence 7654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=237.20 Aligned_cols=376 Identities=15% Similarity=0.112 Sum_probs=245.6
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccc----hhhhcccccccCcccccccchhhHHHHHHHHHHH
Q 043264 18 LTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPS----VLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGI 93 (435)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~ 93 (435)
..+.++.+..++.++......|...++... +.+.++-... ...+++..+..+++++++..+.|++.+.+.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 444556666666666666677777766443 3443311000 0000000011133679999999999999999999
Q ss_pred HHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--cchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhh
Q 043264 94 FSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGT 171 (435)
Q Consensus 94 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 171 (435)
+++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++.+
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887554 668889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc-cCCCChhhHHhcCCHHHHHHHHHHHhCCCcC
Q 043264 172 GFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF-FIPDTPSSLIQRGKVQQALKSLNQVRGTKFD 250 (435)
Q Consensus 172 ~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~ 250 (435)
+...+..+|.++++++++.+.+.. .+||+.|++.+++.++..+..+ +.+|+|+. +++.++
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~---~~~~~~-------------- 231 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSI---HPCISK-------------- 231 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCccc---CCCCCH--------------
Confidence 999999999999999999988752 2599999999888777665544 46676641 111111
Q ss_pred cHHHHHHHHHHHHHh--hhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHH
Q 043264 251 SENELKYLIKYNEDM--RIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILII 327 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~ 327 (435)
+|.+..++..+++ +.+.+.++++.++++. ++...+..+....+.+....|.|.+++ ..|++..+.++....
T Consensus 232 --~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~ 305 (465)
T TIGR00894 232 --FEKKYINSSLQGQKGSTRQSLPIKAIPKSLP----VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305 (465)
T ss_pred --HHHHHHHhhcccccCCCCCCCCHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHH
Confidence 0111111110000 1111234555554432 333344444444456677789998885 479999999999999
Q ss_pred HHHHHHHHHhhhHHHHhhhcchHHH--------HHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHH
Q 043264 328 QSTIFFVCLLLTGYLIDRVGRRIML--------IVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGV 399 (435)
Q Consensus 328 ~~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (435)
..++..++.++.|++.||+++|+.. ..+......+...+.... .....+..++.+.+.+.
T Consensus 306 ~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~ 373 (465)
T TIGR00894 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY------------LSAAFYLTIIILTLANA 373 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH------------cCCchHHHHHHHHHHHH
Confidence 9999999999999999998654211 111111111111111110 11222333333444443
Q ss_pred HhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 400 GMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 400 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+.+... +..+....|..| +.+|.+.|+.+..++
T Consensus 374 ~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~ 406 (465)
T TIGR00894 374 VSSGPL-AGVLINSLDLAP-RFLGFIKGITGLPGF 406 (465)
T ss_pred Hhhhhh-hhhhhchhhcCh-hHHHHHHHHHHHHHH
Confidence 333332 223344456666 489999999988765
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=231.83 Aligned_cols=315 Identities=15% Similarity=0.085 Sum_probs=224.2
Q ss_pred hhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhH
Q 043264 32 AGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGA 111 (435)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 111 (435)
+.+..+.......+. +|.+++++ |.+.++.++..+.+.++..+++++.|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~--l~~~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 11 GTFGLGMAEFGIMGV--LTELAHDV------------------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred HHHHHHhhHHHHHhC--hHHHHHHc------------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 345555555555543 46777776 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 043264 112 LIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFI 191 (435)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 191 (435)
+..+.++.+++.+++++++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999998888889999999999999999999999999999999999988
Q ss_pred hhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhcc
Q 043264 192 MSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASE 270 (435)
Q Consensus 192 ~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (435)
.+. .+||+.|.+.++..++..+. ..++||.++ +.+. + . +
T Consensus 151 ~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~---------------~----~--------------~ 190 (382)
T PRK10091 151 SQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG---------------G----L--------------R 190 (382)
T ss_pred hhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc---------------C----H--------------H
Confidence 775 45999999988876665544 345777542 0000 0 0 0
Q ss_pred ccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch
Q 043264 271 TPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR 349 (435)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 349 (435)
+.+ +.++++..+. .. ...+....+......+.+.++ +..|+++.+.+.......++.++++++.+++.||+++|
T Consensus 191 ~~~-~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~ 265 (382)
T PRK10091 191 EQF-HFLRSPAPWL---IF-AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL 265 (382)
T ss_pred HHH-HHhcChHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence 001 1112221111 11 111111111222233444444 45799999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhh
Q 043264 350 IMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAG 425 (435)
Q Consensus 350 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 425 (435)
+.+..+..+.+++.+++.... +..+...+..++.+.+......+.......+..|++.++.+
T Consensus 266 ~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (382)
T PRK10091 266 RIAAVTDFIIVLALLMLFFFG--------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA 327 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH
Confidence 998888777776665543321 22233334444444444333333333344555566666654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=232.03 Aligned_cols=351 Identities=16% Similarity=0.159 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHH
Q 043264 22 MLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGR 101 (435)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~ 101 (435)
.....+++++...+...|...+... .+..++.| |++++..|++.+.+.+.+++.+|+.|+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv--~~~v~~~f------------------ni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGV--LKEVQTYF------------------NISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHhc------------------CCCchhccchhHHHHHHHHHHHHHHHH
Confidence 3455566667778888888777543 24555555 999999999999999999999999999
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHH
Q 043264 102 LTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGV 181 (435)
Q Consensus 102 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 181 (435)
++|||.||+++.+|..++.++.+++++++.+|++.++|.+.|+|.+.+.|.++.+++|.+|.++|++++++++.+..+|.
T Consensus 91 LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 91 LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHH
Q 043264 182 AGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIK 260 (435)
Q Consensus 182 ~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
.+|.+.+..+.+..+ .|||.|...++++++..++. ++.+|++| +..|+. .++
T Consensus 171 glG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~------------- 223 (493)
T KOG1330|consen 171 GLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV-------DGE------------- 223 (493)
T ss_pred ceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-------ccC-------------
Confidence 999999998888764 39999999999999887775 55777653 111110 000
Q ss_pred HHHHhhhhccccHhh---hhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH----HHcCCCCCchHHHHHHHHHHHH
Q 043264 261 YNEDMRIASETPYKM---LLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV----TSLGIRLKDVFPILIIQSTIFF 333 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~s~~~~~~~~~~~~~~~~ 333 (435)
.+..+.....++| +.+.+......+.+....+. ...+..|.|.+. +-.|++..+...+..+...++.
T Consensus 224 --~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~ 297 (493)
T KOG1330|consen 224 --NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGS 297 (493)
T ss_pred --CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHh----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhch
Confidence 0000111122233 33323322223333333332 233344444443 3457777777788889999999
Q ss_pred HHHhhhHHHHhhhcch----HHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccc
Q 043264 334 VCLLLTGYLIDRVGRR----IMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLP 409 (435)
Q Consensus 334 ~~~~~~g~l~d~~g~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (435)
+|.+++|.++||+.|+ ....+..+..+.+......+...... ....+.+..++++++.-......+.+..
T Consensus 298 lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~------~~~~s~~~~~il~~~g~~~~~~~~a~n~ 371 (493)
T KOG1330|consen 298 LGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA------FTSSSMIFGLILFLVGETISWFNWATNN 371 (493)
T ss_pred hhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999994321 11222111111111111110000000 0223333333333333333334444444
Q ss_pred ceeecccCChhhhhhhhHHHHhh
Q 043264 410 WILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 410 ~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
-+..|++|++.|.+++++...+
T Consensus 372 -~i~l~vV~p~~Rt~a~a~~~~~ 393 (493)
T KOG1330|consen 372 -PIFLEVVPPSRRTTAYALDTVF 393 (493)
T ss_pred -ceeeEecCcccccHHHHHHHHH
Confidence 4557999999999999987654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=231.63 Aligned_cols=345 Identities=14% Similarity=0.094 Sum_probs=246.6
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHh
Q 043264 19 TGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALM 98 (435)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~ 98 (435)
+...+...+.+.+..+...++...+.+. +|.+.+++ |.++.+.++..+.+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQWL 67 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667666666666543 46777777 889999999999999999999999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHH
Q 043264 99 AGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFW 178 (435)
Q Consensus 99 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (435)
.|+++||+|||+++..+..+..++.+++.++++++.+++.|+++|++.+...+.....+.|.+|+++|.+..++......
T Consensus 68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T PRK15402 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL 147 (406)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHH
Q 043264 179 SGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKY 257 (435)
Q Consensus 179 ~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (435)
+|..++|.+++.+.+.. +||+.|++.++..++..+.. ...||+++.. ++ + .+.++
T Consensus 148 ~~~~~g~~i~~~l~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~----------------~~~~~ 203 (406)
T PRK15402 148 LAPLLGPLVGAALIHVL---PWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE--K----------------LSLKE 203 (406)
T ss_pred HHHHHHHHHHHHHHHcc---CccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc--c----------------ccHHH
Confidence 99999999999888754 59999998887777665543 4467764210 00 0 00000
Q ss_pred HHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHH
Q 043264 258 LIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCL 336 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~ 336 (435)
..+++++.++++..........+. .........+.|.++ +..|+++.+.+.......++.+++.
T Consensus 204 -----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~ 268 (406)
T PRK15402 204 -----------LGRDYKLVLKNRRFVAGALALGLV----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN 268 (406)
T ss_pred -----------HHHHHHHHHcCcHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 011233444443322211211111 111223344566665 4578888888888777788899999
Q ss_pred hhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeeccc
Q 043264 337 LLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEI 416 (435)
Q Consensus 337 ~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 416 (435)
++.+++.||+++|+.+..+....+++..++...... .....+.......+.+.+.+....+. .... ..
T Consensus 269 ~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~ 336 (406)
T PRK15402 269 LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI----------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT-LF 336 (406)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc----------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH-hh
Confidence 999999999999999888877777776666553210 12334445556666766666554433 2332 23
Q ss_pred CChhhhhhhhHHHHhhhc
Q 043264 417 LPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 417 ~p~~~r~~~~~~~~~~~~ 434 (435)
.++++|+++.++.+..++
T Consensus 337 ~~~~~~g~~~~~~~~~~~ 354 (406)
T PRK15402 337 SSDVSKGTVSAAMGMLSM 354 (406)
T ss_pred hccccccHHHHHHHHHHH
Confidence 345889999998877653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=230.80 Aligned_cols=308 Identities=23% Similarity=0.274 Sum_probs=214.8
Q ss_pred ccchhhHHHH-----HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh--------HHHHHHhhhh
Q 043264 77 YSWKLTAYNS-----SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG--------MLFLGRVFTG 143 (435)
Q Consensus 77 s~~~~~~~~s-----~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G 143 (435)
++.+.+...+ ..+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 107 (394)
T TIGR00883 28 GDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQG 107 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHH
Confidence 3444444443 33444457899999999999999999999999999999999999875 4789999999
Q ss_pred ccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcchHHHHhhhHHHHHHHHHh
Q 043264 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL-----NFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-----~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.... ...+||+.|.+.+++.++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 187 (394)
T TIGR00883 108 FSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR 187 (394)
T ss_pred hhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887664311 13579999988877766655555
Q ss_pred ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhh
Q 043264 219 FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALT 298 (435)
Q Consensus 219 ~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (435)
...||+|++..++ +++++.+.+.++.++++.+ +.... ....+....
T Consensus 188 ~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 233 (394)
T TIGR00883 188 RNLEETPVFEKAQ--------------------------------EKHKKKRGPIRETLTKHRK-PFLLG-LGLVIATTT 233 (394)
T ss_pred HhcCCChhHHHHH--------------------------------hccccccCCHHHHHHhchH-HHHHH-HHHHHHHHH
Confidence 5567766421000 0011112334444443321 12222 222223233
Q ss_pred chhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCC
Q 043264 299 GFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSH 377 (435)
Q Consensus 299 ~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 377 (435)
.......+.|.+. ++.|.++.+.+.......+...++.++.+++.||+|||+.+.....+..+..........
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------ 307 (394)
T TIGR00883 234 TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------ 307 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 3455667788887 567888888899999999999999999999999999999877554444333222111110
Q ss_pred CCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 378 GTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
...+.+......++.+.+.+....+ ...+..|.+|++.|+++.++.+
T Consensus 308 -----~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~ 354 (394)
T TIGR00883 308 -----DSGSFTLFFFLVLGLALIGGMYTGP-MGSFLPELFPTEVRYTGASLAY 354 (394)
T ss_pred -----cCCchHHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCccceeeEeeehh
Confidence 1223444445555556655555444 4577899999999999988754
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=228.81 Aligned_cols=320 Identities=18% Similarity=0.127 Sum_probs=218.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|+|+.+.+++.+++.+++++++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|++.+ ..+..
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 111 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASC 111 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999865 45667
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC-------CCCcchHHH-HhhhHHHHHHHH-HhccCCCC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL-------NFKRWRIAV-SVSGFPATLMTI-IAFFIPDT 224 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-------~~~~wr~~~-~~~~~~~~~~~~-~~~~~pes 224 (435)
..++.|++|+++|+++.++.....++|..+++.++..+.... ++.+||+.| ...++...+..+ .....+|+
T Consensus 112 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 112 MPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred HHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 889999999999999999999877888877777776655421 124699998 443444433333 34456666
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
|+. +++.++.. ..... .+ .+++.....++.++++..+..... .+..........
T Consensus 192 ~~~---~~~~~~~~-----~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 245 (366)
T TIGR00886 192 PPG---KPATGKLS-----FKGAR-------WS-------VGTGALGDQLKVFRDRHTWILALL----YSVTFGSFLGVS 245 (366)
T ss_pred Ccc---cccchhcc-----ccccc-------cc-------ccchhHHHHHHHHhccchhhHHHH----HHHHHHHHHHHH
Confidence 531 11000000 00000 00 000000122333433322222222 222222244556
Q ss_pred HHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCcccc
Q 043264 305 VVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFS 383 (435)
Q Consensus 305 ~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 383 (435)
.+.|.+++ ..|+++.+++.......+..++++++.+++.||+|+|+.+..+......+..++..... +
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 314 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV-----------S 314 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC-----------C
Confidence 67777775 47999999998888999999999999999999999988877776665555544443210 1
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 384 KRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+.+.......+...+.+...+. .+.+.+|..| +++|+++|+.++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~ 363 (366)
T TIGR00886 315 PLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVSGLVGAIGN 363 (366)
T ss_pred cchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHHHHHHHhcc
Confidence 113444444444555555555443 3567788887 699999999988765
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=234.55 Aligned_cols=312 Identities=15% Similarity=0.082 Sum_probs=203.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|++.|++.+... ...
T Consensus 67 gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~ 145 (476)
T PLN00028 67 NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQ 145 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887643 456
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh----c--CCCCcchHHHHhhhHHHHHHHHHhccCC-CChhh
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS----S--LNFKRWRIAVSVSGFPATLMTIIAFFIP-DTPSS 227 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~----~--~~~~~wr~~~~~~~~~~~~~~~~~~~~p-esp~~ 227 (435)
.+++|++|+++|++++++.....++|..+++.+...+.. . .+..+||+.|++.+++.++..+..++++ +.|+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~- 224 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD- 224 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-
Confidence 678999999999999999987777777777665544432 1 0124799999998888777665554444 3332
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
++.++. +++.+.++.+....+++.++++..+. ..+.++...........+.
T Consensus 225 ----~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 275 (476)
T PLN00028 225 ----GNYREL---------------------KKSGTMPKDSFSKVLRYGVTNYRTWI----LALTYGYSFGVELTMDNII 275 (476)
T ss_pred ----CchhhH---------------------HhcCccccccHHHHHHHHHcCchhHH----HHHHHHHHHHHHHHHHhHH
Confidence 000000 00000000000111223333222221 1222222222233455667
Q ss_pred HHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchH-------HHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 308 QLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRI-------MLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 308 ~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
|.++. +.|++..+++.......++.++++++.|+++||++||+ .......+.++..+++.
T Consensus 276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~------------ 343 (476)
T PLN00028 276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG------------ 343 (476)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc------------
Confidence 77764 57999999999999999999999999999999998752 11122222222111111
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
...+.+...+.+++++++.....+ ..+.+.+|.. ++.|+++.|+.+..+.
T Consensus 344 ---~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~g~~~~~g~ 393 (476)
T PLN00028 344 ---RANSLGAAIVVMILFSIFVQAACG-ATFGIVPFVS-RRSLGVISGLTGAGGN 393 (476)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHhhh-hhcccCcccC-hhhchhhhhhhhcccc
Confidence 112233334444444444443322 2345556664 4789999999876653
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=228.07 Aligned_cols=329 Identities=11% Similarity=0.076 Sum_probs=231.0
Q ss_pred HHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhh
Q 043264 26 CIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS 105 (435)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr 105 (435)
.....++.+..+.+....+.. +|++.+++ |+|.++.+++.+.+.+++.+++++.|++.||
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr 68 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMV--MGPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLMEI 68 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777776666644 47777777 8999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHH
Q 043264 106 AGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGAS 185 (435)
Q Consensus 106 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 185 (435)
+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.+..+....+|..++|
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 148 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP 148 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHh
Q 043264 186 WINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDM 265 (435)
Q Consensus 186 ~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (435)
.+.+.+... ..+||+.|.+.+++.++..+..++ .+.|+. ++++ + +++
T Consensus 149 ~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~----------------~------------~~~ 195 (394)
T PRK03699 149 IIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA----------------P------------KAD 195 (394)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC----------------c------------ccc
Confidence 888776542 146999999888776665544332 222210 0000 0 000
Q ss_pred hhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHh
Q 043264 266 RIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLID 344 (435)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 344 (435)
+.. .+....++ ++...+..+........+..|.|.+++ +.|+++.+.+.......++..+++++.+++.|
T Consensus 196 ----~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 266 (394)
T PRK03699 196 ----KPV----AKEKWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR 266 (394)
T ss_pred ----Ccc----ccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01111122 222222223333334566788998885 57999999999999999999999999999999
Q ss_pred hhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhh
Q 043264 345 RVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSA 424 (435)
Q Consensus 345 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 424 (435)
|+++|+.+.....+..+...++.. . ++.+...+..++.+++.+..++ ....+..|..|. .+++
T Consensus 267 r~~~~~~l~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~-~~~~ 329 (394)
T PRK03699 267 FFDLQRILTVLAGLALVLMYLFVN--------------T-DDPSHLLYAILGLGFFSSAIYT-TIITLGSQQTKV-ASPK 329 (394)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHH--------------c-CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHccC-CCHH
Confidence 999999887766555554333322 1 2223333444555554443333 323455566553 3556
Q ss_pred hhHHHHhhh
Q 043264 425 GQGLSTAIS 433 (435)
Q Consensus 425 ~~~~~~~~~ 433 (435)
..+..+..+
T Consensus 330 ~~g~~~~~~ 338 (394)
T PRK03699 330 LVNFILTCG 338 (394)
T ss_pred HHHHHHHhh
Confidence 666655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=233.58 Aligned_cols=360 Identities=14% Similarity=0.111 Sum_probs=248.5
Q ss_pred HHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccch
Q 043264 30 ASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRK 109 (435)
Q Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr 109 (435)
+++.+...++....++. +|.+.+++ |.++.+.+++.+.+.++..++.+++|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 75 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR 75 (471)
T ss_pred HHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 34456677777666543 47777766 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 043264 110 GALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINY 189 (435)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~ 189 (435)
+++..+.++..++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g 155 (471)
T PRK10504 76 NIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG 155 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHH---------HhCCCc-C-cHHHHHH
Q 043264 190 FIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQ---------VRGTKF-D-SENELKY 257 (435)
Q Consensus 190 ~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~---------~~~~~~-~-~~~~~~~ 257 (435)
.+.+.. +||+.|.+..+...+..+.. ...|+.+. .+.+.|.+...... ..+.+. . .......
T Consensus 156 ~l~~~~---gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (471)
T PRK10504 156 LLVEYA---SWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAG 229 (471)
T ss_pred HHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHH
Confidence 998854 59999999877666655543 33555432 12222222111000 001100 0 0000000
Q ss_pred --------HH-HHHHHhh-hhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHH
Q 043264 258 --------LI-KYNEDMR-IASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILI 326 (435)
Q Consensus 258 --------~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~ 326 (435)
.. ...++++ +++..+. ++++++.....+.... ....+......+.|++++ ..|.++.+.++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 304 (471)
T PRK10504 230 LVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSF----AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMI 304 (471)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00 0001111 1111122 3444443333222222 222224455667888886 48999989999999
Q ss_pred HHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccc
Q 043264 327 IQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWG 406 (435)
Q Consensus 327 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (435)
...++.+++.++.+++.||+|+|+.+..+..+.++...++.+.. .....+.......+.+.+.+....
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA------------LLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999888877777655554421 112222223334444555555544
Q ss_pred cccceeecccCChhhhhhhhHHHHhhh
Q 043264 407 PLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 407 ~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
+. ..+..+.+|++.++++.|+.++..
T Consensus 373 ~~-~~~~~~~~~~~~~g~~~~~~~~~~ 398 (471)
T PRK10504 373 SM-NTLTLKDLPDNLASSGNSLLSMIM 398 (471)
T ss_pred HH-HHHHHHcCCHHhccchHHHHHHHH
Confidence 44 356678899999999999887654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=227.93 Aligned_cols=294 Identities=18% Similarity=0.199 Sum_probs=207.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---h-----ccchhHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---L-----AVNMGMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-----~~~~~~l~~~r~l~G~~~ 146 (435)
|+|.+++|++.+++.++..+++++.|+++||+|||+++..+.+...++.+... . .++++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888777654332 2 357889999999999999
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPS 226 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~ 226 (435)
+...+...+++.|+.|+|+|++++++.+.+...|..++|++++.+.+.. +||..+.+..+..++........||.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF---GFAALALTTMVLPLLAWAFNGTVRKVPA 203 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9888888899999999999999999999999999999999999887754 5998776655444333332222333221
Q ss_pred hHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHH
Q 043264 227 SLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVV 306 (435)
Q Consensus 227 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
+ + +++.+.++..+...... ....+. ..+......+
T Consensus 204 ------~--~-------------------------------~~~~~~~~~~~~~~~~~--~~~~l~----~~~~~~~~~~ 238 (392)
T PRK12382 204 ------H--A-------------------------------GERPSLWSVVGLIWKPG--LGLALQ----GVGFAVIGTF 238 (392)
T ss_pred ------C--c-------------------------------ccCchHHHHHHHHHHhH--HHHHHH----HHHHhHHHHH
Confidence 0 0 00001111111101111 111111 1123345566
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 307 GQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 307 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
.+.++++.|++. .+.......++.++++++.+++.||+++|+.+..+..+..++.+++... ++
T Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------------~~ 301 (392)
T PRK12382 239 VSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---------------PT 301 (392)
T ss_pred HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---------------cc
Confidence 677777766643 4566667778889999999999999999999888877777766554331 23
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+...+...+.+.+.+...... .....|.+|+++|+++.|+.++..+
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~ 348 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPAL-GVEVVKRVPSQVRGTALGGYAAFQD 348 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3444555566666665543333 3555788999999999999887643
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=227.95 Aligned_cols=293 Identities=22% Similarity=0.239 Sum_probs=210.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc---c-----chhHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA---V-----NMGMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~-----~~~~l~~~r~l~G~~~ 146 (435)
|.|+.+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.++ + +++.+++.|+++|++.
T Consensus 47 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (399)
T PRK05122 47 GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE 126 (399)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH
Confidence 8899999999999999999999999999999999999999999888877766553 2 5668899999999999
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPS 226 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~ 226 (435)
+...+....++.|++|+++|+++.++.+.+..+|..+++.+++.+.+.. +||..+++..+..++..+.....|++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (399)
T PRK05122 127 SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG---GLAGLGLLIMLLALLGLLLARPRPAVPP 203 (399)
T ss_pred HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999988754 5999888776665544433332333221
Q ss_pred hHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHH
Q 043264 227 SLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVV 306 (435)
Q Consensus 227 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
.++ + +.+.++.+++.... .....+.. ........+
T Consensus 204 ---~~~---~---------------------------------~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~ 238 (399)
T PRK05122 204 ---VKG---E---------------------------------RLPFRRVLGRVWPY--GMGLALAS----IGFGTIATF 238 (399)
T ss_pred ---CCc---c---------------------------------chhHHHHHHHHHHH--HHHHHHHH----HHHHHHHHH
Confidence 000 0 00111111110001 11111111 113344456
Q ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 307 GQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 307 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
.+.+.++.|.+ +.+.......++.+++.++.+++.||+++|+.+..+..+.+++..++... ++
T Consensus 239 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 301 (399)
T PRK05122 239 ITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---------------PS 301 (399)
T ss_pred HHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---------------cc
Confidence 66666666663 44566677888899999999999999999998888777777666555432 23
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.+...+..++.+++.+...... .....|.+|+++|+++.|+.+...
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~ 347 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPAL-GVEAVKRVPPQNRGAALGAYSVFL 347 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444555666777666554333 344568899999999999887654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=233.14 Aligned_cols=324 Identities=16% Similarity=0.089 Sum_probs=208.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc----chhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV----NMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 150 (435)
|+++.+.++..+.+.++.++++++.|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999888763 67888999999999999988
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHH-HHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHH-HhccCCCChhhH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVA-GASWINYFIMSSLNFKRWRIAVSVSGFPATLMTI-IAFFIPDTPSSL 228 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~l 228 (435)
+.....+.|++|+++|++++++.+.+.++|.. .+++++..+... .+||+.|++.+++.++..+ ..+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 88888899999999999999999999998864 555544333332 3699999998877666544 456678887531
Q ss_pred HhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhc-cCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 229 IQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLE-RKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
..++ .++.++ +.. +..+ ++++++.+.++.++ ...+.+.++...+..+......+....|.
T Consensus 216 ~~~~-~~~~~~----------~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 276 (452)
T PRK11273 216 GLPP-IEEYKN----------DYP-------DDYN-EKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS 276 (452)
T ss_pred CCCC-hhhhhh----------ccc-------cccc-cccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111000 000 0000 00000111222111 01111222222222222222345567788
Q ss_pred HHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh--cchHHHH-HhHHHHHHHHHHHHHHHHhhccCCCCcccc
Q 043264 308 QLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV--GRRIMLI-VGGCQIFICQVILAILMASESRSHGTSIFS 383 (435)
Q Consensus 308 ~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 383 (435)
|.++++ .|++..+++....+..++.+++.++.|+++||+ +||.... ....+..++.+.+... +
T Consensus 277 P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-------------~ 343 (452)
T PRK11273 277 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-------------P 343 (452)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-------------c
Confidence 998875 689888888888888999999999999999999 4444322 2222222222222111 1
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 384 KRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+.+...+..+..+.+.... ......+..|.+|++.|+++.|+.+..++
T Consensus 344 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 393 (452)
T PRK11273 344 AGNPTVDMACMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGY 393 (452)
T ss_pred ccChHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcChhhhhhHHHHHHHHHH
Confidence 122222223333333322111 11223455799999999999999877643
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=224.73 Aligned_cols=305 Identities=14% Similarity=0.121 Sum_probs=221.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKV 234 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 234 (435)
+++.|++|++++++..+.......+|..++|.+++.+.+.. +||+.|++.++..++..+..++++|+++. + +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~- 188 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---GWQAIFATLFAITLLLILPTLRLKPSKKA---R-K- 188 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-c-
Confidence 89999999999999999988888999999999999998754 59999998887777766665555554320 0 0
Q ss_pred HHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHc
Q 043264 235 QQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314 (435)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (435)
+ ++++.++++.++++..+......... .........+.|.++++.
T Consensus 189 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~ 233 (401)
T PRK11043 189 Q-------------------------------SQDALTFKQLLKSKTYLGNVLIFAAC----SAAFFAWLTGSPFILEQM 233 (401)
T ss_pred c-------------------------------chHHHHHHHHHcChhHHHHHHHHHHH----HHHHHHHHHHhHHHHHHc
Confidence 0 00011233444333222212211111 112344556778888888
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHH
Q 043264 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILR 394 (435)
Q Consensus 315 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (435)
|+++.+.+.......++.+++.+..+++.||+++|+..........++.+.+...... ..+..+...+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 303 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL----------SHPSLVPLLIPF 303 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh----------ccCcHHHHHHHH
Confidence 9998888888888888999999999999999999987766655555544433322110 112333344444
Q ss_pred HHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 395 CFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+.+.+.+.... .......|..| ++|+++.|+.++++.
T Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~ 341 (401)
T PRK11043 304 CVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQL 341 (401)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHH
Confidence 555555555433 33344456666 579999999987653
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=217.91 Aligned_cols=304 Identities=24% Similarity=0.344 Sum_probs=246.4
Q ss_pred HhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchh
Q 043264 31 SAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKG 110 (435)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 110 (435)
++.+..+++....++. .|.+.+++ |.++.+.++..+...++..+++++.|+++||+|||+
T Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~ 65 (352)
T cd06174 6 LGFFLSGLDRGLLSPA--LPLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR 65 (352)
T ss_pred HHHHHHHHhhhhhHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch
Confidence 3345555565555433 35555555 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 043264 111 ALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYF 190 (435)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 190 (435)
.+..+.++..++.++..+.++++.+++.|++.|++.+...+...+++.|++|+|+|++..++.+....+|..+++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 145 (352)
T cd06174 66 VLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGL 145 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhcc
Q 043264 191 IMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASE 270 (435)
Q Consensus 191 l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (435)
+.+..+ ||+.+.+.++..++..+...+++
T Consensus 146 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 174 (352)
T cd06174 146 LAESLG---WRWLFLILAILGLLLALLLLFLL------------------------------------------------ 174 (352)
T ss_pred HHHHhh---HHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 988644 99999988877777665543321
Q ss_pred ccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch
Q 043264 271 TPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL-GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR 349 (435)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 349 (435)
+.+....+..+...........+.|.+.++. |.+..+.+.......++..++.++.+++.||++||
T Consensus 175 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (352)
T cd06174 175 -------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241 (352)
T ss_pred -------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122223333333444566777888887664 88999999999999999999999999999999999
Q ss_pred H-HHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 350 I-MLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 350 ~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
+ .+..+.....++.+.+... ++.+...+...+.+.+.+... +....+..|..|+++|+++.|+
T Consensus 242 ~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd06174 242 RLLLLIGLLLAALGLLLLALA---------------PSLALLLVALLLLGFGLGFAF-PALLTLASELAPPEARGTASGL 305 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHhccc-hhHHHHHHhhcCHHHHHHHHHH
Confidence 9 8888888888877766543 234556666677777766654 4556888999999999999999
Q ss_pred HHhhhc
Q 043264 429 STAISF 434 (435)
Q Consensus 429 ~~~~~~ 434 (435)
.+....
T Consensus 306 ~~~~~~ 311 (352)
T cd06174 306 FNTFGS 311 (352)
T ss_pred HHHHHH
Confidence 887653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=223.73 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=220.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 101 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN 101 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
+++.|++|+++|+++.++.+....+|..++|.+++.+.+.. +||+.|++.+++.++..+. .+++||+++. +++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 175 (377)
T PRK11102 102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF---SWHAIFWVLALAAILAAALVFFFIPETLPK---ERR 175 (377)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc
Confidence 99999999999999999999999999999999999988754 5999998888777665544 4557775420 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-H
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-T 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (435)
+ +.+.+ +..+++++.++++.... ..+..+....+......+.|.++ +
T Consensus 176 -~------------~~~~~---------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (377)
T PRK11102 176 -Q------------PFHLR---------------TTIRNFASLFRHKRVLG----YMLASGFSFAGMFSFLTAGPFVYIE 223 (377)
T ss_pred -C------------CCChH---------------HHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 0 00000 00112233343322221 11122222222334444555554 5
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..|+++.+.+.......++.+++.++.+++.||+|+|+.+..+.....+..+.+..... .....+...+
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 292 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL-----------LDLGFWALVV 292 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHH
Confidence 57999999999999999999999999999999999999888877665444333322211 1122333333
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...++..+.+.... ....+..|..| +.++++.++.+...
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~ 331 (377)
T PRK11102 293 GVAAFVGCVSMISS-NAMAVILDEFP-HMAGTASSLAGTLR 331 (377)
T ss_pred HHHHHHHHHHHhhH-HHHHHHhcccc-ccchHHHHHHHHHH
Confidence 33333333333222 22344567766 78999998877653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=228.25 Aligned_cols=328 Identities=15% Similarity=0.112 Sum_probs=211.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc----cchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA----VNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+...
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999998887765 467778899999999999999
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLI 229 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~ 229 (435)
+.....+.|++|+++|++++++.+.+.++|..+++.+.+..... ..+||..|++.+++.++..+. .+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 98999999999999999999999999999999988776654432 136999999988887775544 456788775311
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccH-hhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPY-KMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
.++ .++ .+.+. .++..+ + ++++.+.++.. +..++++..+. ..+..+......+....|.|
T Consensus 215 ~~~-~~~-------~~~~~---~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p 275 (438)
T TIGR00712 215 LPP-IEE-------YRNDY---PDDYNE---K-AEQELTAKEIFMQYVLPNKLLWY----IAIANVFVYLLRYGVLDWSP 275 (438)
T ss_pred CCC-chh-------ccccc---cccccc---c-cccccchHHHHHHHHccCchHHH----HHHHHHHHHHHHHHHHHhHH
Confidence 000 000 00000 000000 0 00000000111 12333332222 22222222223455667888
Q ss_pred HHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhh
Q 043264 309 LIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSA 387 (435)
Q Consensus 309 ~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
.++++ .|+++.++++...+..+..++++++.+++.||+++++....+.....+.......... . +..+.
T Consensus 276 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~ 345 (438)
T TIGR00712 276 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM---N-------PAGNP 345 (438)
T ss_pred HHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh---c-------CCCch
Confidence 88875 6899999999999999999999999999999996543222232222221111111100 0 11222
Q ss_pred HHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 388 FVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+......+..+.+.. +..........|.+|++.|+++.|+.+..++
T Consensus 346 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 391 (438)
T TIGR00712 346 LVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGY 391 (438)
T ss_pred HHHHHHHHHHHHHHc-cHHHHHHHHHHHhcChhheeeehhhhchHHH
Confidence 322222233332211 1111112345799999999999999887654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=222.05 Aligned_cols=305 Identities=15% Similarity=0.077 Sum_probs=214.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.++.+.+++.+.+.+++.++.+++|+++||+|||++++.+.++..++++++.++++. ++.|+++|++.+...|...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999888777664 7889999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKV 234 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 234 (435)
+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+....+||+|+.. +++.
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~ 184 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQS 184 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccC
Confidence 9999999999999999999999999999999999999873 377777666655554444556688876311 0000
Q ss_pred HHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-H
Q 043264 235 QQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-S 313 (435)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 313 (435)
++ .....++. ++..+.+++++..+.......+.... .....+..+.+.+ .
T Consensus 185 ~~--------------~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 235 (393)
T PRK11195 185 WN--------------PIALLRDF-----------FHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLVLAWAPVA 235 (393)
T ss_pred CC--------------HHHHHHHH-----------HHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 00 00000000 01123444444433322222222111 2233334444443 4
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALIL 393 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+|.++.+.+.......++.+++++..+++.||.++++.+..+.. .++....+.. .++.+.....
T Consensus 236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~---------------~~~~~~~~~~ 299 (393)
T PRK11195 236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL---------------QHSLLPAYPL 299 (393)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH---------------HhHHHHHHHH
Confidence 79999999999999999999999999999999998887766643 3332222221 1334445555
Q ss_pred HHHHHHHhhhccccccceeecccCChhh-hhhhhHHHHhhhc
Q 043264 394 RCFLGVGMALSWGPLPWILNCEILPIEV-RSAGQGLSTAISF 434 (435)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~ 434 (435)
..+.+.+.+....+.. +...|..|++. +|++.++.+...+
T Consensus 300 ~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~ 340 (393)
T PRK11195 300 LILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNEN 340 (393)
T ss_pred HHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHH
Confidence 6566776666655554 55567766654 7999888887653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=227.26 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=215.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHH-HHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFL-GRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~ 153 (435)
|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++++.+++ .|+++|++.+...+..
T Consensus 50 g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~ 129 (455)
T TIGR00892 50 QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129 (455)
T ss_pred CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHH
Confidence 899999999999999999999999999999999999999999999999999999999998865 5799999998877777
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc-CCCChhhHHhcC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF-IPDTPSSLIQRG 232 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~l~~~~ 232 (435)
..++.++++ ++|+++.++.+.+..+|..++|.+++.+.+.. +||+.|++.+++.++..+..++ .|+.+.. .+.
T Consensus 130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~---gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~ 203 (455)
T TIGR00892 130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF---GWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVS 203 (455)
T ss_pred HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccc
Confidence 888899985 78999999999999999999999999888854 5999999998877665544333 3322210 000
Q ss_pred CHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 043264 233 KVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT 312 (435)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (435)
+.++ + +...+.+ +.++. +.....++..+..++ +.++++... ......+....+......+.|.+.+
T Consensus 204 ~~~~-~---~~~~~~~-~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~~~ 269 (455)
T TIGR00892 204 KSKS-K---EGLPPDG-STKKL----SKKSTAEKINRFLDF-SLFTHRGFL----VYLSGNVIMFLGFFAPIIFLVPYAK 269 (455)
T ss_pred cccc-c---ccCCCCC-ccccc----cccchhhhhhhhcch-HHhcCchHH----HHHHHHHHHHHHccchHHHHHHHHH
Confidence 0000 0 0000000 00000 000000000000011 233333222 2222222222234455567777788
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh--cchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV--GRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVA 390 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+.|++..+++...++.+++.++++++.+++.||. ++|+...++......+...+... ..++.+..
T Consensus 270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-------------~~~~~~~~ 336 (455)
T TIGR00892 270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-------------LAGDYTGL 336 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-------------HhchHHHH
Confidence 8899999999999999999999999999999973 33433333322222222111111 11334455
Q ss_pred HHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 391 LILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
++..++.+++.+.... ....+..|.+|+++++++.|+.++..
T Consensus 337 ~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~ 378 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVE 378 (455)
T ss_pred HHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHH
Confidence 5566666666655433 34566789999999999999988764
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=221.48 Aligned_cols=333 Identities=10% Similarity=0.045 Sum_probs=224.6
Q ss_pred HHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc
Q 043264 29 VASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR 108 (435)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 108 (435)
+.+..++...+.....+. +|.+.+++ +.+.++.++..+++.++++++++++|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~p~--l~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr 80 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPG--IINVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGR 80 (413)
T ss_pred HHHHHHHHHHHHHhhccC--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCc
Confidence 344455555666666544 46676776 8899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 043264 109 KGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWIN 188 (435)
Q Consensus 109 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 188 (435)
|+++..+.++++++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.++
T Consensus 81 r~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg 160 (413)
T PRK15403 81 RPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG 160 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877777788899999999999999999999999999999999
Q ss_pred HHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhh
Q 043264 189 YFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRI 267 (435)
Q Consensus 189 ~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (435)
+.+.+. .+||+.|++.++..++..+. .+.+||+++. +++.. + .+
T Consensus 161 ~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~--------------~---------------~~ 205 (413)
T PRK15403 161 AALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF--------------S---------------AK 205 (413)
T ss_pred HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC--------------C---------------hH
Confidence 988875 45999999988887776654 4457887530 00000 0 00
Q ss_pred hccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh
Q 043264 268 ASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV 346 (435)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (435)
...+.++.+++++..+. ..+..............+.|.++++ .|+++.+.++.......+..++..+.+++.++.
T Consensus 206 ~~~~~~~~ll~~~~~~~----~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~ 281 (413)
T PRK15403 206 SVLRDFRNVFRNRLFLT----GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP 281 (413)
T ss_pred HHHHHHHHHHcCHHHHH----HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 00112344444433222 2222222222244555667877765 589999889888888888888888888776554
Q ss_pred cchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccc-eeecccCChhhhhhh
Q 043264 347 GRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPW-ILNCEILPIEVRSAG 425 (435)
Q Consensus 347 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~p~~~r~~~ 425 (435)
.+++.......+..++..++...... ..+..+......++++.+.+...+.... ++..+. ..+|++
T Consensus 282 ~~~~~~~~~~~~~~ig~~l~~~~~~~----------~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~---~~~G~a 348 (413)
T PRK15403 282 TEPRFIWRAVPIQLVGLALLIVGNLL----------WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN---LPKGTV 348 (413)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH----------ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC---CCCcHH
Confidence 44444333333333333333221100 1122223345556666666655433321 221122 236777
Q ss_pred hHHHHhhh
Q 043264 426 QGLSTAIS 433 (435)
Q Consensus 426 ~~~~~~~~ 433 (435)
.++.+...
T Consensus 349 ~a~~~~~~ 356 (413)
T PRK15403 349 SASLNMVI 356 (413)
T ss_pred HHHHHHHH
Confidence 77666553
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=222.94 Aligned_cols=326 Identities=15% Similarity=0.119 Sum_probs=223.8
Q ss_pred HhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchh
Q 043264 31 SAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKG 110 (435)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 110 (435)
+..+..+++....+.. .|.+++++ |+|+.+.+++.+.+.+++.+++++.|++.||+|||+
T Consensus 33 ~~~~~~~~~~~~~~~~--~p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~ 92 (438)
T PRK10133 33 SLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 3346667776666544 46776666 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHH
Q 043264 111 ALIIGGIIYLIGVSLH---ALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI 187 (435)
Q Consensus 111 ~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 187 (435)
++..+.+++.++.+++ .++++++.++++|+++|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+++.+
T Consensus 93 ~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 93 GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 4689999999999999999999999999999998777777778999999999999999999
Q ss_pred HHHHhhcC------------------C-----CCcchHHHHhhh-HHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHH
Q 043264 188 NYFIMSSL------------------N-----FKRWRIAVSVSG-FPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLN 242 (435)
Q Consensus 188 ~~~l~~~~------------------~-----~~~wr~~~~~~~-~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~ 242 (435)
+..+.... + ..+||++|+... +..++..+. ....||.+. +++.
T Consensus 173 g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~-------- 240 (438)
T PRK10133 173 GQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS-------- 240 (438)
T ss_pred HHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc--------
Confidence 87654110 0 024666665433 333332222 223454221 0000
Q ss_pred HHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-HH-HcCCCCCc
Q 043264 243 QVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI-VT-SLGIRLKD 320 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~s~~~ 320 (435)
++++.+...+.+++++++..+...+...+.. ........|.+.+ .+ ..|+++.+
T Consensus 241 --------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ 296 (438)
T PRK10133 241 --------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGF 296 (438)
T ss_pred --------------------cccccchhhhHHHHHhCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 0000000122334444443333222222221 2233344566655 34 47999999
Q ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHH
Q 043264 321 VFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVG 400 (435)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (435)
++.......++.++++++.+++.||+++|+++..+..+.++.+++..+. + . . .....+.+.+++
T Consensus 297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~-~-~-~~~~~~~l~glg 360 (438)
T PRK10133 297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------G-G-H-VGLIALTLCSAF 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------C-C-h-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999888766665554443321 1 1 1 234556677777
Q ss_pred hhhccccccceeecccCChhhhhhhhHHHH
Q 043264 401 MALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 401 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
.+..+++. +....|.+|+ +.+++.++..
T Consensus 361 ~~~i~P~~-~s~a~~~~~~-~~~~as~l~~ 388 (438)
T PRK10133 361 MSIQYPTI-FSLGIKNLGQ-DTKYGSSFIV 388 (438)
T ss_pred HHHHHHHH-HHHHHcccch-hhccchhHHh
Confidence 77775544 5666787775 3556666554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=219.75 Aligned_cols=310 Identities=16% Similarity=0.113 Sum_probs=207.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---h-ccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---L-AVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++. . .++++.+++.|+++|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999998877653 3 3578888999999999998888
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHH-HHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGV-AGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSL 228 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l 228 (435)
+.....+.|++|+++|++++++.+.+.++|. .+++.+++.+.+.. +|+..++.......+..+. .++.+|.++
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 198 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF---GEMNTLWSALAFVLTGGVIALFSNKDIFT-- 198 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHHHHhccCCCCC--
Confidence 8888889999999999999999999999997 58899888877643 4554444333222222222 233444321
Q ss_pred HhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 229 IQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
+++.++ +++.++ .+..++.+++++..+. ..+..+...........+.|
T Consensus 199 --~~~~~~---------------~~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p 246 (402)
T TIGR00897 199 --PQHMQT---------------REKFSE-----------LGKAATILFTNPNVLL----GGMVRIINTIGLFGFAVFLP 246 (402)
T ss_pred --cccccC---------------Ccchhh-----------HHHHHHHHHcChhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 0112333444333222 22222333334556677889
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHH-HhHHHHHHHHHHHHHHHHhhccCCCCccccchhh
Q 043264 309 LIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLI-VGGCQIFICQVILAILMASESRSHGTSIFSKRSA 387 (435)
Q Consensus 309 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
.+.++.|++..+.+.......++..++++..|++.||++||+... .+.....++...+...... ..++.
T Consensus 247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~----------~~~~~ 316 (402)
T TIGR00897 247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH----------FGHSF 316 (402)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc----------cCCcH
Confidence 988889999988888888899999999999999999999888664 2333333332222221100 11233
Q ss_pred HHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 388 FVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+...+..++.+.+.+.. .+.. ....|..| ++|+++.|+.+....
T Consensus 317 ~~~~~~~~~~G~~~~~~-~~~~-~~~~~~~~-~~~g~~~g~~~~~~~ 360 (402)
T TIGR00897 317 AVALIIAIALGIFLAGY-VPLA-AVFPTLAP-KHKGAAMSVLNLSAG 360 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHHHhhCc-chhHHHHHHHHHHHH
Confidence 44445555555555443 3443 34467655 689999999887653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-27 Score=218.02 Aligned_cols=314 Identities=14% Similarity=0.151 Sum_probs=218.4
Q ss_pred HhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchh
Q 043264 31 SAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKG 110 (435)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~ 110 (435)
++.++.+.+.+..++. +|.+++++ |.|..++|++.+.+.++..+++++.|+++||+|||+
T Consensus 13 ~~~~~~~~~~~~~~~~--lp~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 13 CGLLLLTLAIAVLNTL--VPLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR 72 (381)
T ss_pred HHHHHHHHhhhhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556677777777654 46777766 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 043264 111 ALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYF 190 (435)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 190 (435)
++..+.++..++..++++++|++.+++.|+++|++.+...+.....+.+..++++|+++++.+..+.++|..+|+.+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 73 SYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998888888888889999999999999999999999999999998
Q ss_pred HhhcCCCCcchHHHHhhhHHHHHHH-HHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhc
Q 043264 191 IMSSLNFKRWRIAVSVSGFPATLMT-IIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIAS 269 (435)
Q Consensus 191 l~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (435)
+.+... |...+ ..+....... +.....+|++. ++ ++
T Consensus 153 l~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~--~~ 189 (381)
T PRK03633 153 VSTELM---SVLPW-VTGLVLAAILPLLFTRILNQQA-------------------------------------EN--HD 189 (381)
T ss_pred cccccc---chHHH-HHHHHHHHHHHHHHhcccCCCC-------------------------------------CC--CC
Confidence 866421 22222 2222111111 11111222110 00 00
Q ss_pred cccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch
Q 043264 270 ETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR 349 (435)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 349 (435)
+.+.++.++++..+.......... ........+.|.++++.|.++.+.+.......+..+++++..+++.||+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 190 STSIWPMLKLRQARLGVNGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CCCHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 122333444333222111111111 1133445678888888899988889888999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 350 IMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 350 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
+.+..+.....++...+.. .. .......+.+.+.... .|.......|..|+++++.+.+..
T Consensus 266 ~~l~~~~~~~~~~~~~~~~----------------~~--~~~~~~~l~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~ 326 (381)
T PRK03633 266 LVLRVQVFVVILGSIAMLS----------------QA--AMAPALFILGAAGFTL-YPVAMAWACEKVEHHELVAMNQAL 326 (381)
T ss_pred HHHHHHHHHHHHHHHHHhh----------------hH--HHHHHHHHHHHHHHhH-HHHHHHHHHccCCHHHHHHHHHHH
Confidence 9888777776665543321 01 1112223333333222 344456667888888777666654
Q ss_pred H
Q 043264 430 T 430 (435)
Q Consensus 430 ~ 430 (435)
+
T Consensus 327 ~ 327 (381)
T PRK03633 327 L 327 (381)
T ss_pred H
Confidence 3
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=218.78 Aligned_cols=300 Identities=16% Similarity=0.143 Sum_probs=209.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALII-GGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|.|+.++|++.+++.++..+.+++.|+++||+||||.++. +..+..++.++++++++++.+++.|++.|.+.+...|.
T Consensus 28 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~ 107 (375)
T TIGR00899 28 VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQ 107 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHH
Confidence 38999999999999999999999999999999999987665 56666777888899999999999999999888888888
Q ss_pred cchhhhcccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHH
Q 043264 153 APIYLVEMAPTKWRGAI--GTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLI 229 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~ 229 (435)
..++..|+.|+++|++. .+....+.++|..+++.+++.+.+.. +||+.|++.+++.++..+.. +++||+|++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T TIGR00899 108 LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF---GFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP 184 (375)
T ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc
Confidence 88888998887777654 57778888999999999999998754 59999999888776665554 45888764110
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
++ + ++.+.++.++++..+.......+... .......+.|.
T Consensus 185 ~~----~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 224 (375)
T TIGR00899 185 GA----L--------------------------------TRLEVRGLLASRDTRLLFVACTLMWG----CNILYIINMPL 224 (375)
T ss_pred cc----c--------------------------------CcchhhhhhcCcchHHHHHHHHHHHH----HHHHHHhhhHH
Confidence 00 0 00111122332222222222222111 12233445566
Q ss_pred HH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 310 IV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 310 ~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
++ ++.|.++.+.+..........+++.++.+++.||++||+.+..+.....+....+... ++.+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 289 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---------------NSLW 289 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 65 5679998888888777777888889999999999999998877665544443332221 2334
Q ss_pred HHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.......+.+++.+... +....+..|..|+ +++++.++.+...
T Consensus 290 ~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 332 (375)
T TIGR00899 290 ALLMLQLLNAIFIGILA-GIGMLYFQDLMPG-RAGAATTLYTNTG 332 (375)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhCcc-hhhHHHHHHHHHH
Confidence 44444555555555443 3445667788876 4668899887654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=218.91 Aligned_cols=321 Identities=10% Similarity=0.094 Sum_probs=221.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc-----cchhHH-HHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhcc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-----GRKGAL-IIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLG 145 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 145 (435)
|+|.+++++.... .+...+ .+++|+++||+ ||||.+ +.+.++.++...+.++. .+.+.+....++.+++
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 9999999999755 455555 99999999998 899975 56777777777777777 4556677778888888
Q ss_pred ccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcchHHHHhhhHHHHHHHHHhcc
Q 043264 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN-----FKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+ .++||..|++.++..++..+..++
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999988877543 234999999988877776555443
Q ss_pred -CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhc
Q 043264 221 -IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTG 299 (435)
Q Consensus 221 -~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (435)
.||+++. +++ .+++ +++.+++++++++++..++.+.......+. ...
T Consensus 177 ~~~e~~~~---~~~-----------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 224 (356)
T TIGR00901 177 LAKEPQED---ASV-----------------PKPL-----------TQAVLKPIREFFQRKNMIQALLLLLLIVLY-KLG 224 (356)
T ss_pred hccCCCcc---ccc-----------------chhH-----------HHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHH
Confidence 5664320 000 0000 000012344555444322222222222222 222
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 300 FNLNAVVGQLIVTSLGIRLKDVFPILIIQS-TIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
......+.|.++++.|+++++.+......+ +..+++.++.+++.||+|+|+.+..+.++.++...++.+..... .+.+
T Consensus 225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 303 (356)
T TIGR00901 225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG-HHDG 303 (356)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-cccc
Confidence 445666778887778999988888777655 67889999999999999999998888777776655444331100 0000
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
...+..+......++.+++.+....+. .++..|.+|+++|++.+|+.++...
T Consensus 304 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 ---ITFPHLLMLFLTITLEAVTGGLGTVAF-VAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ---cccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHh
Confidence 000233445555555566666554444 5788999999999999999988764
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=219.29 Aligned_cols=324 Identities=21% Similarity=0.226 Sum_probs=243.4
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc--chhHHHHHHhhhhccccc
Q 043264 71 DGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 148 (435)
+.+++.+..+.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++...+- +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 456899999999999999999999999999999999999999999999999999999884 456789999999999999
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc-cCCCChhh
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF-FIPDTPSS 227 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~ 227 (435)
.+|+...+.++|.|+++|++..++...+..+|.+++.++++.+.+. ..||+..|++.++.+++..++++ +..|+|.-
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999886 25699999999999999887754 46777741
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhh--ccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIA--SETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAV 305 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (435)
+++ ..++|.+.+++...+++.+ .+.|++++++.+. ++...+..+....+...+..
T Consensus 223 ---h~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~ 279 (466)
T KOG2532|consen 223 ---HPN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLT 279 (466)
T ss_pred ---CCC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 111 2233444444333322222 3678888886543 55556666666667889999
Q ss_pred HHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcc---------hHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 043264 306 VGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGR---------RIMLIVGGCQIFICQVILAILMASESR 375 (435)
Q Consensus 306 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~ 375 (435)
|.|.|+++ +|++..+.|+..++..+...+..+++|.++||+.+ |..-.++....+++++.+.+.
T Consensus 280 y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~------ 353 (466)
T KOG2532|consen 280 YLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT------ 353 (466)
T ss_pred HhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec------
Confidence 99999975 89999999999999999999999999999999855 222334445555555554443
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+....+..++++.+.....+...... +.-..+. .+++-+..+|+.+.++.
T Consensus 354 -------~~~~~~~a~~~l~~~~~~~g~~~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~ 403 (466)
T KOG2532|consen 354 -------SDEHRLLAVILLTIAIGLSGFNISGF-YKNHQDI-APQHAGFVMGIINFVGA 403 (466)
T ss_pred -------CCCcchHHHHHHHHHHHHcccchhhh-Hhhhhhc-cchHHHHHHHHHHHHHH
Confidence 22222333333333222222222211 2222232 55788899998887754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=214.83 Aligned_cols=291 Identities=13% Similarity=0.055 Sum_probs=203.6
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHhhhhccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----VNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~ 148 (435)
+|+|++|.+++.+++.+++.++.++.|.+.||+|.|+++.++.++.++.+++.+++ ++++.+++.|++.|++ +.
T Consensus 65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~ 143 (462)
T PRK15034 65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GA 143 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HH
Confidence 49999999999999999999999999999999999999999999999999999987 8999999999999998 77
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh-----hcC----------CCCcchHHHHhhhHHHHH
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM-----SSL----------NFKRWRIAVSVSGFPATL 213 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-----~~~----------~~~~wr~~~~~~~~~~~~ 213 (435)
.++.....+++++|+++||++.++.....++|..+++++...+. ... +..+||.+.++..++.++
T Consensus 144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv 223 (462)
T PRK15034 144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI 223 (462)
T ss_pred hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999997777777766655554432 111 123488888787777666
Q ss_pred HHHHhcc-CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHH
Q 043264 214 MTIIAFF-IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALP 292 (435)
Q Consensus 214 ~~~~~~~-~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (435)
..+..++ ++|.|. ++.+.....+.+|++..+. ..+.
T Consensus 224 ~~i~~~~~~~~~~~---------------------------------------~~~~~~~~~~vlk~~~~Wl----lsll 260 (462)
T PRK15034 224 ATIAAWSGMNDIAS---------------------------------------SRASIADQLPVLQRLHLWL----LSLL 260 (462)
T ss_pred HHHHHHHhCCCccc---------------------------------------cccCHHHHHHHhCCCchhH----HHHH
Confidence 6555443 443321 0000112333444444333 3333
Q ss_pred HHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHh
Q 043264 293 TFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMAS 372 (435)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 372 (435)
+++.+.++..+..+.|++.++ .++............+...+.++++|+++||+|+++++.++.+.+.++...+......
T Consensus 261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~ 339 (462)
T PRK15034 261 YLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG 339 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555567777888888765 3443333333455568888999999999999999999998888777766444333210
Q ss_pred hccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCCh
Q 043264 373 ESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPI 419 (435)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 419 (435)
. ...+.+...+.++...++.+.+.+++ +-++++.+|+
T Consensus 340 --~-------~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~ 376 (462)
T PRK15034 340 --T-------GSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQ 376 (462)
T ss_pred --c-------cccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhh
Confidence 0 11234444444444445555554444 4456677774
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=226.03 Aligned_cols=305 Identities=12% Similarity=0.074 Sum_probs=222.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL-----AVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~ 149 (435)
+.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|+++|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988877777665442 567889999999999998888
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHH
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLI 229 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~ 229 (435)
.+...+++.|+.|+++|+++.++...+.++|..+||.+++.+.+.. +|++.+.+.++..++..+..+.+||+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---GVAWNYGLAAAGTFITLLPLLRLPALPPPP- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 8888999999999999999999999999999999999999988754 499999888877776666666677754310
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
+++ ++..++. ++.++..++++..+...+...+. .. ......+.|.
T Consensus 204 -~~~------------------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~p~ 248 (417)
T PRK10489 204 -QPR------------------EHPLRSL-----------LAGFRFLLASPVVGGIALLGGLL---TM--ASAVRVLYPA 248 (417)
T ss_pred -ccc------------------ccchHHH-----------HHHHHHHHcChHHHHHHHHHHHH---HH--HHhHHHhhHH
Confidence 000 0000000 11223333333222222211111 11 2344567787
Q ss_pred HHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 310 IVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 310 ~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
+.++ .|.++.+.+.......++.+++.++.+++.||.++++.+..+..+.+++.+.+... ++.+
T Consensus 249 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~ 313 (417)
T PRK10489 249 LADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---------------PMWI 313 (417)
T ss_pred HHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---------------chHH
Confidence 8776 89998889999999999999999999999999877777777766666665444321 2334
Q ss_pred HHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
...+..++++.+.+.. .+...+++.|..|++.|+++.|+.++..+
T Consensus 314 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 358 (417)
T PRK10489 314 LAVLCLALFGYLSAIS-SLLQYTLLQTQTPDEMLGRINGLWTAQNV 358 (417)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 4445555555555443 33445677899999999999999877654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=216.47 Aligned_cols=326 Identities=15% Similarity=0.141 Sum_probs=231.2
Q ss_pred HHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc
Q 043264 29 VASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR 108 (435)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 108 (435)
+++..+..|+..+..++.. |.+++++ |+++.+.|++.+.+.+++.+++++.|++.||+||
T Consensus 8 ~~~~f~~~G~~~~~~~~l~--~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~ 67 (410)
T TIGR00885 8 ITSLFALWGFANDITNPMV--PQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY 67 (410)
T ss_pred HHHHHHHHHHHHHhHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3344577777777776554 7777777 8999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHH
Q 043264 109 KGALIIGGIIYLIGVSLHAL---AVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGAS 185 (435)
Q Consensus 109 r~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 185 (435)
|+++.++.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+...++|..+++
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----------------------CCcchHHHHhhhHHHHHHHHHhcc--CCCChhhHHhcCCHHHHHHH
Q 043264 186 WINYFIMSSLN-----------------------FKRWRIAVSVSGFPATLMTIIAFF--IPDTPSSLIQRGKVQQALKS 240 (435)
Q Consensus 186 ~l~~~l~~~~~-----------------------~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~ 240 (435)
.++..+..... ..+||++|++.+++.++..+...+ .||.++ ++ +
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~---- 216 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--A---- 216 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--c----
Confidence 99987753310 135999998888766665444322 343211 00 0
Q ss_pred HHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcC--CCC
Q 043264 241 LNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLG--IRL 318 (435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~s~ 318 (435)
++.+.+++.++.++++......+..++. .........+.+.+.++.+ .+.
T Consensus 217 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~y----vg~e~~~~s~l~~y~~~~~~~~~~ 268 (410)
T TIGR00885 217 ------------------------KQISFSASLSRLARIRHYREGVIAQFFY----VGVQIMCWTFIIQYAVRLIPGMTA 268 (410)
T ss_pred ------------------------ccccchhhHHHHHhChhHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccCCCCH
Confidence 0000011223344433333322222222 2223345566777766543 333
Q ss_pred CchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHH
Q 043264 319 KDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLG 398 (435)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (435)
..+............+|+++++++.||+++|+.+.++....++.+++.... + . ........+.+
T Consensus 269 ~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------------~-~--~~~~~~l~~~g 332 (410)
T TIGR00885 269 GFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------------G-G--HVGLYCLTLCS 332 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------------C-C--hHHHHHHHHHH
Confidence 334555666668889999999999999999998887777776665555442 1 1 23355566677
Q ss_pred HHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 399 VGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 399 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
++.+..+ |..+....+..+++.+..+.++..
T Consensus 333 lf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~ 363 (410)
T TIGR00885 333 AFMSLMF-PTIYGIALKGLGQDTKYGAAGLVM 363 (410)
T ss_pred HHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHH
Confidence 7777776 455677788888776655555444
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=214.08 Aligned_cols=300 Identities=16% Similarity=0.133 Sum_probs=211.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|++.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|++.|++.+...+...
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999988888877 778999999999999999998888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKV 234 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~ 234 (435)
.++.|++| ++|+++.++.+.+.++|..+++.+.+.+.+..+ .+||+.|...++..++... .++||.++ +.
T Consensus 110 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~------~~ 179 (355)
T TIGR00896 110 SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRR------RV 179 (355)
T ss_pred HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhcc------cc
Confidence 89999886 689999999999999999999999888876532 2499988776654443322 23343321 00
Q ss_pred HHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHc
Q 043264 235 QQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSL 314 (435)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (435)
+ ++++..+...++.++++..+. ..+..+.....+.....+.|.++++.
T Consensus 180 ~----------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~~~~~ 227 (355)
T TIGR00896 180 A----------------------------ANQTTTRLTPVRIWRSPLAWQ----VTVFFGLQSGLYYSLIGWLPAILISH 227 (355)
T ss_pred C----------------------------CCCCCCCCCCchhhcCHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000000112233443332222 12222222223455667889888888
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh-cchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHH
Q 043264 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV-GRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALIL 393 (435)
Q Consensus 315 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
|++..+.+...+...++.++++++.|++.||+ +||+.+..+..+.+++.+.+.+. +....+ ..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~---~~ 291 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-------------PMHGLW---AW 291 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-------------hhhHHH---HH
Confidence 99999999999999999999999999999999 45666666666666665555432 111111 13
Q ss_pred HHHHHHHhhhccccccceeec-ccCChhhhhhhhHHHHhhhc
Q 043264 394 RCFLGVGMALSWGPLPWILNC-EILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+++++.+.... ....... +..+++.+++..++.+.+++
T Consensus 292 ~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (355)
T TIGR00896 292 ALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGY 332 (355)
T ss_pred HHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 3455666554433 2223333 44456778888888776543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=202.31 Aligned_cols=344 Identities=18% Similarity=0.124 Sum_probs=254.2
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSA 96 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~ 96 (435)
+..++.+.+.......+|...+..+.++. .+.+ ++|+|+.|.+++.++..+...+..
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~-----~i~~------------------~~~LS~~q~~ll~aiPil~GallR 66 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGV-----FIKS------------------DFGLSEGQKGLLVAIPILVGALLR 66 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcc------------------ccCCCHHHHHHHHHHHHHHhHHHH
Confidence 34444555555555555665555555432 2223 349999999999999999999999
Q ss_pred HhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh---HHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHH
Q 043264 97 LMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG---MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGF 173 (435)
Q Consensus 97 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 173 (435)
++.|.+.||+|.|++..++.++..+-.+..+++.+.+ ++++.+++.|++ |+.+.+...++++++|++++|.+++++
T Consensus 67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~ 145 (417)
T COG2223 67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIA 145 (417)
T ss_pred HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHh
Confidence 9999999999999999999999999999999985554 999999999998 678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcH
Q 043264 174 QIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252 (435)
Q Consensus 174 ~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 252 (435)
. ..|+|..+...++..+....+...||....+..+..++..+. ++.+.|.|....
T Consensus 146 g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~----------------------- 201 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA----------------------- 201 (417)
T ss_pred c-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc-----------------------
Confidence 9 888888888887777766543113999888887777775555 444666653100
Q ss_pred HHHHHHHHHHHHhhhhcc-ccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHH
Q 043264 253 NELKYLIKYNEDMRIASE-TPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQST 330 (435)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~ 330 (435)
..++.. ..++...+++.. +...+.++..+.++..+..++|.+++ ++|.++.+++.......+
T Consensus 202 ------------~~~~~~~~~~~~v~~~~~~----W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~ 265 (417)
T COG2223 202 ------------SVKPQLPAQLKAVFSNKDT----WLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPL 265 (417)
T ss_pred ------------cccccchhHHHHHhcCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 000001 223334444333 34455556666678888899999885 589999999999999999
Q ss_pred HHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccc
Q 043264 331 IFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPW 410 (435)
Q Consensus 331 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (435)
.+.+.++++|+++||+|.+++..+....++++..+......... ...+.+.....+....++.+.+.+.. +
T Consensus 266 ~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~l~l~~~~G~GnGsv-f 336 (417)
T COG2223 266 IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG--------HGGSFVVFVAVFLALFVFAGLGNGSV-F 336 (417)
T ss_pred HHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc--------cCcchHHHHHHHHHHHHHhccCcchh-e
Confidence 99999999999999999999999888888888777765432100 12445555665666666777775544 5
Q ss_pred eeecccCChhhhhhhhHHHHhhhc
Q 043264 411 ILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 411 ~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
-+++..+|. +-|.+.|+..+++.
T Consensus 337 k~Ip~if~~-~~G~v~G~vga~G~ 359 (417)
T COG2223 337 KMIPVIFPK-ETGAVTGIVGAIGG 359 (417)
T ss_pred eechHHHHh-hhhHHHHHHHHhcc
Confidence 666777764 67777888777653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=216.91 Aligned_cols=324 Identities=16% Similarity=0.094 Sum_probs=217.1
Q ss_pred hhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccch-----hhHHHHHHHHHHHHHHHhHHHhhhhcc
Q 043264 33 GLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWK-----LTAYNSSLYIAGIFSALMAGRLTTSAG 107 (435)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~G 107 (435)
.++.++......+. +|.+.+++ |++..+ .+++.+++.++..+++++.|+++||+|
T Consensus 23 ~~~~~~~~~~~~~~--l~~~~~~~------------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 82 (408)
T PRK09874 23 CFLTGAAFSLVMPF--LPLYVEQL------------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG 82 (408)
T ss_pred HHHHHHHHHHhhhh--HHHHHHHh------------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Confidence 35555555554433 46666665 666544 588999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHH
Q 043264 108 RKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI 187 (435)
Q Consensus 108 rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 187 (435)
||+++..+.++..++.+++.+.++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.++...+..+|..++|.+
T Consensus 83 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (408)
T PRK09874 83 RKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLA 161 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999855 567777888999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhh
Q 043264 188 NYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMR 266 (435)
Q Consensus 188 ~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (435)
++.+.+.. +||+.|.+.++..++..+.. +++||+++. +++ ++..+.
T Consensus 162 ~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~~~~~-------- 208 (408)
T PRK09874 162 GGLLADSY---GLRPVFFITASVLFLCFLVTLFCIRENFQP---VSK-------------------KEMLHM-------- 208 (408)
T ss_pred HHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhccCccc---ccc-------------------hhhhHH--------
Confidence 99988754 59999998887766655543 446654320 000 000000
Q ss_pred hhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCc----hHHHHHHHHHHHHHHHhhhHHH
Q 043264 267 IASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKD----VFPILIIQSTIFFVCLLLTGYL 342 (435)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~~~~~~~g~l 342 (435)
+ +..+.++++..........+ ... ........+.+.+..+.+.+..+ .+......+++.+++.+..+++
T Consensus 209 ---~-~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l 281 (408)
T PRK09874 209 ---R-EVVTSLKNPKLVLSLFVTTL--IIQ-VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL 281 (408)
T ss_pred ---H-HHHHhCcCCchHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111222211111111111 111 11223334455555543322222 3445556677888888999999
Q ss_pred HhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhh
Q 043264 343 IDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVR 422 (435)
Q Consensus 343 ~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 422 (435)
.||++||+.+..+.....++.+..... ++.+...+..++.+.+.+...... ..+..+..|++.|
T Consensus 282 ~dr~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 345 (408)
T PRK09874 282 GDRIGPEKILITALIFSVLLLIPMSFV---------------QTPLQLGILRFLLGAADGALLPAV-QTLLVYNSSNQIA 345 (408)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHhhhHhhHHHH-HHHHHHhCCcccc
Confidence 999999999888777666555443321 234444555556666665543333 3555678898999
Q ss_pred hhhhHHHHhhh
Q 043264 423 SAGQGLSTAIS 433 (435)
Q Consensus 423 ~~~~~~~~~~~ 433 (435)
++.+++.+.+.
T Consensus 346 g~~~~~~~~~~ 356 (408)
T PRK09874 346 GRIFSYNQSFR 356 (408)
T ss_pred eeeehHHHHHH
Confidence 99998876653
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=213.93 Aligned_cols=303 Identities=15% Similarity=0.183 Sum_probs=212.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
.+..|.+++++|+++.++...+..+|..++|.+++.+.+. .+||+.|++.++..++..+. .++.||+++. +++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 192 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR 192 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc
Confidence 8899999999999999999999999999999999988775 45999999887766654443 4557776521 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
+ ++ .+..+++.++++..+........ ...+......+.+.++++
T Consensus 193 ------------------~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 236 (394)
T PRK11652 193 ------------------R---TR-----------VLASYRTLLSNRRFNCYLLMLIG----TLAGIAVFEACSGVLMGA 236 (394)
T ss_pred ------------------h---hH-----------HHHHHHHHHcChHHHHHHHHHHH----HHHHHHHHHHhChHHHHH
Confidence 0 00 01223333433332222222111 112233334455556655
Q ss_pred -cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 314 -LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 314 -~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.|.++.+.+.......++.+++..+.+++.||.+++.... .....++.+.+..... ....+.+....
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 304 (394)
T PRK11652 237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPGW----------FGVMNVWTLLV 304 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----------hccccHHHHHH
Confidence 7888888888888888888899999999999988433322 2222222222111110 01123445555
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...+.+.+.+.... ....+..|.+| ++++++.++.+...
T Consensus 305 ~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~ 343 (394)
T PRK11652 305 PAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQ 343 (394)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHH
Confidence 56666666665543 33456678887 57888888877553
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=214.07 Aligned_cols=253 Identities=15% Similarity=0.188 Sum_probs=193.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
.++.|++|+++|+++.++.+....+|..++|.+++.+.+. .+||+.+++.++..++..+. ...+||+++. +++
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~ 187 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP 187 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC
Confidence 9999999999999999999999999999999999888764 45999998888776665554 4557776420 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-H
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-T 312 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (435)
++ ... .+..++.++++..........+... .......+.|.+. +
T Consensus 188 -~~---------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 232 (392)
T PRK10473 188 -AA---------------SSK---------------PRENSESLLNRFFLSRLVITTLSVT----VILTFVNTSPVLLME 232 (392)
T ss_pred -Cc---------------cch---------------HHHHHHHHhCHHHHHHHHHHHHHHH----HHHHHHHhCHHHHHH
Confidence 00 000 0011122222221111111111111 1222334455555 4
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAI 368 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 368 (435)
+.|+++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++.+.+..
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 233 QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 67998888888888999999999999999999999999988888777776665554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=209.33 Aligned_cols=299 Identities=12% Similarity=0.132 Sum_probs=213.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.|..++|++.+...+...+.+++.|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~ 233 (435)
+++.|++|+++|+++.++......+|..+||.+++.+.+ ++||+.|++.++..++..+. .++.||.+. ++
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~ 192 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----ST 192 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cc
Confidence 999999999999999999999999999999999999973 46999999887776655443 344554210 00
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
. + + +.++++++.++++............ .........+.|.+.++
T Consensus 193 ~-----------------~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~ 237 (400)
T PRK11646 193 V-----------------R---T-----------PVREGMTRVLRDKRFVTYVLTLTGY----YMLAVQVMLMLPIMVND 237 (400)
T ss_pred c-----------------c---h-----------hhHHHHHHHHcCchHHHHHHHHHHH----HHHHHHHHHhhhhhHHh
Confidence 0 0 0 0011233344333222211111111 11112234567888777
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHh-hhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLID-RVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.+.++.+.+.......+....+....++..| |++.++.+..+..+.+++..++... ++.+...+
T Consensus 238 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~ 302 (400)
T PRK11646 238 IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------------SNLQQLFT 302 (400)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHH
Confidence 6667777788877777766665555565554 5666666666666666665544332 22333444
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...+++.+.+... |...++..|..|+++|++++|+.+...
T Consensus 303 ~~~l~~~g~~~~~-p~~~~~~~~~~p~~~~g~~~g~~~~~~ 342 (400)
T PRK11646 303 LICLFYIGSIIAE-PARETLSASLADARARGSYMGFSRLGL 342 (400)
T ss_pred HHHHHHHHHHHHH-ccHHHHHHhcCCcccchhhhhHHHHHH
Confidence 4455555555443 343567789999999999999887654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=208.73 Aligned_cols=297 Identities=13% Similarity=0.026 Sum_probs=215.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHH----HHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGAL----IIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.|.+++|++.+++.+...++++++|+++||+|||... ..+..+..+ ..+..+++++.+++.|.++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 89999999999999999999999999999999985433 222222222 244567899999999999999988888
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC-hhhHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT-PSSLI 229 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes-p~~l~ 229 (435)
|...++..|+ +++|++..+....+.++|.+++|++++.+.+.. |||..|.+..+..++..+.. .++|+ ++
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~---g~~~~f~~~~~~~~~~~~~~-~~~~~~~~--- 183 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF---DEQNILAILTAGLAFMLIGF-LIKPTIPP--- 183 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---ChhHHHHHHHHHHHHHHHHH-HcCCCCCC---
Confidence 9888887664 477899999999999999999999999998864 59999887665433332222 33333 21
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
+++ ++ +++.++.++.++++|++..+.......+ ..........+.|.
T Consensus 184 -~~~-~~---------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l----~~~~~~~~~~~~~~ 230 (382)
T TIGR00902 184 -KDA-IP---------------------------EDESQGDSAFIALLKNPMNLRFLAAVCL----IQGAHAAYYGFSAI 230 (382)
T ss_pred -Ccc-cc---------------------------ccccccchhHHHHHcChHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 000 00 0000112234455554433332222222 22234555667788
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHH
Q 043264 310 IVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFV 389 (435)
Q Consensus 310 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
++++.|.++.+.+.......++.+++....+++.||+++|+.+.++.+...+....+.+. ++.+.
T Consensus 231 ~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~ 295 (382)
T TIGR00902 231 YWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI---------------EAFPL 295 (382)
T ss_pred HHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH---------------hhHHH
Confidence 888899999999999999999999999999999999999999999988888887766543 45566
Q ss_pred HHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 390 ALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
.+...++.+..++....+. ..++.+. |++.|++++++.++.
T Consensus 296 ~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~~q~~~~~~ 336 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAKLQALYNAL 336 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHHHHHHHHHH
Confidence 6777788888888776554 4677777 999999999987643
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=211.96 Aligned_cols=265 Identities=19% Similarity=0.123 Sum_probs=205.2
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccc
Q 043264 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
++.++...+.+.+.++++++++++.+++|.+.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP 153 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP 153 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence 44578899999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHhhhHHHHHHHHH-hccCCCChh-
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL---NFKRWRIAVSVSGFPATLMTII-AFFIPDTPS- 226 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~- 226 (435)
....++..|+.+++|++.++++.++.++|.++|.+++..+.+.. +..||||.|++.++++++..+. .+++|+.|.
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~ 233 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSK 233 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhh
Confidence 99999999999999999999999999999999999999865422 2368999999999988887766 566999985
Q ss_pred -hHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhh--hccccHhhhhccCchhHHHHHHHHHHHHHhhchhHH
Q 043264 227 -SLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRI--ASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLN 303 (435)
Q Consensus 227 -~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (435)
|..++++.+-+. ++.++...+... .++..+++.++.+. ++...+..++.....+.+
T Consensus 234 ~~fl~~~ek~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~dp~----vw~~~l~~~~~~lv~~~~ 292 (495)
T KOG2533|consen 234 AWFLTDEEKELVV-----------------ERLRESPSGGIENKFKWKGFKEALKDPG----VWPFSLCYFFLKLVNYGF 292 (495)
T ss_pred ccccchHHHHHHH-----------------HHHHhccCCCcccccCHHHHHHHHhchh----HHHHHHHHHHHhhccccH
Confidence 221111111000 011100000000 12233444444333 444445555555557788
Q ss_pred HHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhh----hcchHHHHHhHH
Q 043264 304 AVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDR----VGRRIMLIVGGC 357 (435)
Q Consensus 304 ~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~ 357 (435)
.+|+|.++++ .|++..++..+..+..++++++.+++|+++|| ..+|........
T Consensus 293 ~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~ 351 (495)
T KOG2533|consen 293 SYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC 351 (495)
T ss_pred HHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999987 66999999999999999999999999999999 445554444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=213.78 Aligned_cols=343 Identities=12% Similarity=0.109 Sum_probs=221.8
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSA 96 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~ 96 (435)
..++++....+.+. +..|......+.. +|.+.++. |.+..+++.+ +.....+ ++.
T Consensus 8 ~~~~~~~~~~~~l~---~~~gl~~~~~~~~--l~~~l~~~------------------g~~~~~ig~~-~~~~~~~-~~~ 62 (491)
T PRK11010 8 IFQQPNSAILLILG---FASGLPLALTSGT--LQAWMTVE------------------NIDLKTIGFF-SLVGQAY-VFK 62 (491)
T ss_pred HHcccHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHhC------------------CCCHHHHHHH-HHHHHHH-HHH
Confidence 33444544444443 5555555555432 24444443 7888888887 3333343 689
Q ss_pred HhHHHhhhhc-----cchhH-HHHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhccccccccccchhhhcccCCCCcc
Q 043264 97 LMAGRLTTSA-----GRKGA-LIIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRG 167 (435)
Q Consensus 97 ~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 167 (435)
+++|+++||+ ||||. +..+.++.+++...+++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+
T Consensus 63 ~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg 142 (491)
T PRK11010 63 FLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG 142 (491)
T ss_pred HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 9999999999 99986 556777777777777775 46788999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCC
Q 043264 168 AIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT 247 (435)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~ 247 (435)
++.++...+..+|.++++.++..+.+.. .|||..|++.++..++..+..++.||+++.. ++ ++
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~--~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~----------- 205 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRY--LGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK----------- 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc-----------
Confidence 9999999999999999999998887731 3699999998887777666655678865310 00 00
Q ss_pred CcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchHHHHH
Q 043264 248 KFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVFPILI 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~ 326 (435)
.. ++....++++.++++..+.......+.. .. ......+.+.++ ++.|++..+.+....
T Consensus 206 ---~~-------------~~~~~~~l~~~~~~~~~~~~ll~~~l~~---~~-~~~~~~~~~~~l~~~~G~s~~~~g~~~~ 265 (491)
T PRK11010 206 ---TL-------------EQAVVAPLRDFFGRNNAWLILLLIVLYK---LG-DAFAMSLTTTFLIRGVGFDAGEVGLVNK 265 (491)
T ss_pred ---ch-------------hhhHHHHHHHHHcCcCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00 0000123445554433332222222111 11 222333444444 568999999998874
Q ss_pred -HHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcc
Q 043264 327 -IQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSW 405 (435)
Q Consensus 327 -~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (435)
...++.+++.++.|++.||+++|+.+.++..+.++..+.+..... ..++.+......++..++.+.+.
T Consensus 266 ~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-----------~~~~~~~l~~~~~l~~~~~g~~~ 334 (491)
T PRK11010 266 TLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-----------TDKNLYSMGAAVFFENLCGGMGT 334 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHHHHHHH
Confidence 556899999999999999999988877666555554433332211 11222233333333222233232
Q ss_pred ccccceeecccCChhhhhhhhHHHHhhh
Q 043264 406 GPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 406 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.+. +++..+..|++.+++.+|+.++..
T Consensus 335 ~~~-~a~~~~l~~~~~~~t~~gl~~s~~ 361 (491)
T PRK11010 335 AAF-VALLMTLCNKSFSATQFALLSALS 361 (491)
T ss_pred HHH-HHHHHHHcCCCCcHHHHHHHHHHH
Confidence 222 455567788888888888777653
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=211.77 Aligned_cols=298 Identities=11% Similarity=0.058 Sum_probs=211.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|++..++|++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++.+++++++.+++.|++.|.+.+...+...
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988788888889
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCChhhHHhcCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTPSSLIQRGK 233 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~l~~~~~ 233 (435)
.+..|..|+++|+++.++.....++|..++|.+++.+.+ .+|+..|.+.++..++..+.. +++||+++ +++
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~ 190 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIA 190 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccc
Confidence 999999999999999999999999999999999998875 359999998887776654443 34555431 000
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH--
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-- 311 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 311 (435)
++ + + + ..+.++.++++..+.......+..+. ......+.+.+.
T Consensus 191 -~~---------------~----------~-~----~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 235 (395)
T PRK10054 191 -TE---------------T----------G-S----VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMV 235 (395)
T ss_pred -cc---------------h----------h-h----hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHH
Confidence 00 0 0 0 00113334433333322222222221 112222333333
Q ss_pred -HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHH
Q 043264 312 -TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVA 390 (435)
Q Consensus 312 -~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
++.+.+....+.......+.........+++.||.++|+.+..+..+..++...+... .++.+..
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~ 301 (395)
T PRK10054 236 VADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--------------GNSLLLW 301 (395)
T ss_pred hcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--------------chHHHHH
Confidence 2344555556667777777777777888999999999998888877777666555431 1233444
Q ss_pred HHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 391 LILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
.+...+++.+.... .|....++.+..|++.|+++.+..+
T Consensus 302 ~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~~~~~~ 340 (395)
T PRK10054 302 GMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASYFSAQS 340 (395)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceehHhHHH
Confidence 45556666665443 3444567788999999999887544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=203.11 Aligned_cols=298 Identities=10% Similarity=0.011 Sum_probs=209.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccch----hHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRK----GALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.|..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......+++++.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999999999999999994 3333222222 22334446889999999999999999899
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHh
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQ 230 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~ 230 (435)
+...++..++ .++|+++.+......++|..+||++++.+.+.. +||..|++.++..++..+...+.||+++
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~---- 183 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---GEQAILWILTAGVASMLLGQLLRPTIMP---- 183 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---ChhHHHHHHHHHHHHHHHHHHccCCCCC----
Confidence 9888887776 456888889999999999999999999998864 5999998877655544443444555321
Q ss_pred cCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 043264 231 RGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI 310 (435)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (435)
+++.+ ++.++...+++++++++..+.......+... .......+.|.+
T Consensus 184 ~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 231 (382)
T PRK11128 184 QGESR----------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQG----SHAAYYGFSAIY 231 (382)
T ss_pred ccccc----------------------------cccccccchHHHHHcChhHHHHHHHHHHHHH----HhHhHHHHHHHH
Confidence 00000 0000112345666665544433332222222 133445566777
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHH
Q 043264 311 VTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVA 390 (435)
Q Consensus 311 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.++.|.+..+.+.......+..++...+.+++.||+++|+.+..+....+++.+.+... ++.+..
T Consensus 232 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~ 296 (382)
T PRK11128 232 WQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---------------TALPWL 296 (382)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---------------hhHHHH
Confidence 77889998889999888889999999999999999999999888888777766554432 455566
Q ss_pred HHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 391 LILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
++..++.+++++....+. ..+..+. +++++++..++.+..
T Consensus 297 ~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 336 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIRLQALYSAL 336 (382)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHHHHHHHHHH
Confidence 667777777777654433 4555665 566678888877643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=217.77 Aligned_cols=301 Identities=17% Similarity=0.133 Sum_probs=208.8
Q ss_pred hhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhH
Q 043264 32 AGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGA 111 (435)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~ 111 (435)
..+..+...+..+... +++.++| +++..+.|++.+.+.++++++.++.+++.||+|||+.
T Consensus 41 ~~~~~~~~~g~~~~~l--~~iek~F------------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~ 100 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSL--TTIERRF------------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV 100 (633)
T ss_pred HHHHHHHHHHHHHhhc--hhhhhhh------------------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE
Confidence 3444555555555433 5555555 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc---------------------------------------------------chhHHHHHHh
Q 043264 112 LIIGGIIYLIGVSLHALAV---------------------------------------------------NMGMLFLGRV 140 (435)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~l~~~r~ 140 (435)
+.++.++++++++++++.+ .+..++++|+
T Consensus 101 i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 180 (633)
T TIGR00805 101 IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQL 180 (633)
T ss_pred EEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHH
Confidence 9999999999999988763 2456789999
Q ss_pred hhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC-------------------cch
Q 043264 141 FTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFK-------------------RWR 201 (435)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~-------------------~wr 201 (435)
++|+|.+...+...+++.|++|+++|+++++++..+..+|..+|+++++.+.+...++ +||
T Consensus 181 l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 181 LRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred HHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988653211 277
Q ss_pred HHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCc
Q 043264 202 IAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKY 281 (435)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (435)
..|++.+++.++..+..+++|+..+-...+.+.++.++. .. ....+ +...+ ..+..++.....+.+++++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~--~~-~~~~~--~~~~~----~~~~~~~~~~~~~~Ll~n~~ 331 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETE--KL-EKSED--KSRKK----NSDITKDFPKIIKRLLCNPI 331 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhh--cc-ccccc--ccchh----hhhhHHHHHHHHHHHHcCcH
Confidence 778888887777666666666542100000010000000 00 00000 00000 00000001123444555443
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHH-HHHHHHhhhHHHHhhhc--chHHHHHhHH
Q 043264 282 RPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQST-IFFVCLLLTGYLIDRVG--RRIMLIVGGC 357 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~~~~~~~~~~ 357 (435)
++...+..+........+..|+|.+++ ++|+++.+++.+.....+ +.+++.+++|+++||++ .|+.+.++..
T Consensus 332 ----f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~ 407 (633)
T TIGR00805 332 ----YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAIC 407 (633)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHH
Confidence 333333334444446677889999886 589999999988877665 56899999999999988 4566666666
Q ss_pred HHHHHHHH
Q 043264 358 QIFICQVI 365 (435)
Q Consensus 358 ~~~i~~~~ 365 (435)
...++.+.
T Consensus 408 ~~~~~~~~ 415 (633)
T TIGR00805 408 LSTLSYLL 415 (633)
T ss_pred HHHHHHHH
Confidence 66665444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=230.03 Aligned_cols=312 Identities=14% Similarity=0.033 Sum_probs=218.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHH---HhccchhHHHHHHhhhhcccccccccc
Q 043264 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLH---ALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++. ..+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 34557999999999999999999999999999999999887666555543 345789999999999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC------CCcchHHHHhhhH-HHHHHHHHhccCCCChh
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN------FKRWRIAVSVSGF-PATLMTIIAFFIPDTPS 226 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~------~~~wr~~~~~~~~-~~~~~~~~~~~~pesp~ 226 (435)
.+++.|++|+++|++++++...+..+|.++|+.+++.+.+..+ ..+|++.+.+..+ ..++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 9999999999999999999999999999999999999877510 0124444433333 33333444556788764
Q ss_pred hHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHH
Q 043264 227 SLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVV 306 (435)
Q Consensus 227 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
....+++.++ . .........++.+++++..+..++...+..+ .......+
T Consensus 205 ~~~~~~~~~~---------------~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 254 (1146)
T PRK08633 205 AAPEVFDKKK---------------Y-----------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWF----ISQLAQAN 254 (1146)
T ss_pred CCcccccccc---------------c-----------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHh
Confidence 2111000000 0 0000001223444444333332222222222 12334455
Q ss_pred HHHHH-HHcCCCCC-chHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 307 GQLIV-TSLGIRLK-DVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 307 ~~~~~-~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.|.++ +..|++.. ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++.+.
T Consensus 255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------- 319 (1146)
T PRK08633 255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--------------- 319 (1146)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---------------
Confidence 66665 45899888 88999999999999999999999999999888877777776666555432
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+.+..++..++++++.+....+. .+++.+..|++.||+++|+.+++.+
T Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~ 368 (1146)
T PRK08633 320 PSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQN 368 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHH
Confidence 234455566666666666654444 5677899999999999998887653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=200.08 Aligned_cols=297 Identities=14% Similarity=0.120 Sum_probs=189.1
Q ss_pred ccccchhhHHHHHHHH-HHHHHHHhHHHhhhhccchhHHH-HHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYI-AGIFSALMAGRLTTSAGRKGALI-IGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|++++++|++.+...+ +..++.+++++ +||+||||.++ .+.++..++..+.+++++++.+++.+.+.|...+...+.
T Consensus 47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 125 (393)
T PRK15011 47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQ 125 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 8999999999876655 55556655666 99999998754 556666677888889999998876655544444567788
Q ss_pred cchhhhcccCCCCcc--hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHH
Q 043264 153 APIYLVEMAPTKWRG--AIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLI 229 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~ 229 (435)
...++.|+.++++|. ...++.+.+.++|.+++|++++.+.+.. |||..|++.++..++..+. .+++||+++-
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-- 200 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF---SFTVMYLSAAVAFIVCGVMVWLFLPSMRKE-- 200 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHhhcCccCCC--
Confidence 888888887666553 4457888899999999999999998754 5999999988776666554 4457876520
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
+++ ++ ++ .+.. .+++ +..+........ ..........+.|.
T Consensus 201 -~~~-~~---------------------------~~----~~~~---~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~p~ 241 (393)
T PRK15011 201 -LPL-AT---------------------------GT----LEAP---RRNR--RDTLLLFVICTL-MWGTNSLYIINMPL 241 (393)
T ss_pred -Ccc-cc---------------------------cc----cccc---cccc--ccHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 000 00 00 0000 0010 111111111111 11223344556777
Q ss_pred HHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 310 IVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 310 ~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
+++ +.|+++.+.+.......+..+++.++.|+++||++||+.+..+.....+....... . ++.+
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~ 306 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM--------------A-HSPA 306 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--------------H-hhHH
Confidence 764 57888888888887777888899999999999999999877665544443322211 1 2233
Q ss_pred HHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
..+....+.+++.+..... ...+..|.+|+ .|+++.++.+...
T Consensus 307 ~~l~~~~l~~~~~g~~~~~-~~~~~~~~~p~-~~g~~~~~~~~~~ 349 (393)
T PRK15011 307 ILLGLQLLNAIYIGILGGI-GMLYFQDLMPG-QAGSATTLYTNTS 349 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CcchHHHHHHHHH
Confidence 3333333333333332222 23455788885 5899988876643
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=187.87 Aligned_cols=325 Identities=17% Similarity=0.118 Sum_probs=203.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.+....|.+.+.+.+++.+.++.+|.++||+|||+++++|++..++..++.++++|+..+.+.|++.|+.-| ....+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 4566778999999999999999999999999999999999999999999999999999777777999999865 566788
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc---CCCCcchHHHHhhhHHHHH-HHHHhccCCCChhhHHh
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS---LNFKRWRIAVSVSGFPATL-MTIIAFFIPDTPSSLIQ 230 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~---~~~~~wr~~~~~~~~~~~~-~~~~~~~~pesp~~l~~ 230 (435)
++++|.+++|+|+++++...+++++|.++||.+++++... .+.+..-.+-++..+.+.. .....+++||+-+ .
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~ 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---L 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---c
Confidence 9999999999999999999999999999999999999882 2211111111222222222 2334577999832 2
Q ss_pred cCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchh--HHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 231 RGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRP--HLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
|++.+++.... +..+..++.++.+ . ......+...+... ..+....+..+.....+....++.+
T Consensus 220 rk~~~~~~~~~--------~~~~~~~~~~~~~---~---~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~ 285 (451)
T KOG2615|consen 220 RKRNDEHSTLQ--------EAADDRLALLKFA---R---IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVL 285 (451)
T ss_pred hhhcccccchh--------hhhhhhhhhcchh---h---hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 22211110000 0000000000000 0 00000111111111 1122222222222222334444444
Q ss_pred HHH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhc--chHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccch
Q 043264 309 LIV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVG--RRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKR 385 (435)
Q Consensus 309 ~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
.+. +.+|+++.+.|.+.+..++...+......+..||.+ .+..+..+..++.-..+++.. ..
T Consensus 286 ~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~---------------~~ 350 (451)
T KOG2615|consen 286 FLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL---------------AR 350 (451)
T ss_pred HhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc---------------cc
Confidence 443 458999999999999988888888877777777765 333333333333222222221 13
Q ss_pred hhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 386 SAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
....+.....+..+..+...+ ....+.....|+++||++.|+..+.+
T Consensus 351 ~~~~l~~~s~l~sf~~A~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~ 397 (451)
T KOG2615|consen 351 TPVVLYLGSTLKSFSTASVVT-CLTSLVHKYGPQSQRGTLNGIFRSLG 397 (451)
T ss_pred cchhhhHHHHHHHHHHHHhhH-HHHHHHHhcCCcccchHHHHHHHHHH
Confidence 334444555555555444433 33567788999999999999988765
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=227.42 Aligned_cols=320 Identities=14% Similarity=0.007 Sum_probs=217.6
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHH---HHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccch
Q 043264 79 WKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALII---GGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPI 155 (435)
Q Consensus 79 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 155 (435)
...++..+++.+.++++++++|+++||+|||+++.. +.+...+..+.+...+++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997633 33333333344444589999999999999999999999999
Q ss_pred hhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHH
Q 043264 156 YLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQ 235 (435)
Q Consensus 156 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~ 235 (435)
++.|++++++|++++++.+++.++|.++||++++++.... +|++.|+..++..++..+..+++|+++.- .++...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 206 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---NFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKI 206 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCee
Confidence 9999999999999999999999999999999999998864 49999866656556555556667765420 000000
Q ss_pred HHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-c
Q 043264 236 QALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-L 314 (435)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 314 (435)
+ .+.. ++....++.+.+++..+...+...+..+ .......+.|.++++ +
T Consensus 207 ~------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~ 256 (1140)
T PRK06814 207 D------------------RNII--------RSTITLLKYAKADKRIWLAILGISWFWL----VGAVVLSQLPLLAKETL 256 (1140)
T ss_pred c------------------cchH--------HHHHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHc
Confidence 0 0000 0001234444444443333332222222 234555677887754 7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC-----ccccchhhHH
Q 043264 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT-----SIFSKRSAFV 389 (435)
Q Consensus 315 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 389 (435)
|.++...+.+.+..+++.++|.++.+++.|+..+++.+..+.++.+++.+.+.+........... ......+.|.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 99999999999999999999999999999888777666555555544444333210000000000 0001134455
Q ss_pred HHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 390 ALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+..++++++.+....+. .+++.+..|++.||+++|+.++++.
T Consensus 337 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~ 380 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHH
Confidence 5566666777666655554 5777899999999999999887653
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=191.81 Aligned_cols=325 Identities=12% Similarity=0.079 Sum_probs=217.2
Q ss_pred hhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhc-----c
Q 043264 33 GLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-----G 107 (435)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----G 107 (435)
++.+|+..+..... +|.+.++. |+|.+++|++..+... .+..+++|+++||+ |
T Consensus 8 ~~~~~~~~~~~~~~--~~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 8 GFASGLPLALTSGT--LQAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHhhhHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 35556666665533 46666555 9999999999777776 58999999999999 8
Q ss_pred chh-HHHHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHH
Q 043264 108 RKG-ALIIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAG 183 (435)
Q Consensus 108 rr~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~ 183 (435)
||| .+.++.++.+++..+.++. ++++.+.+..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++
T Consensus 66 ~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 66 RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 876 6777888888888777776 357778888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHH
Q 043264 184 ASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNE 263 (435)
Q Consensus 184 ~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (435)
++.++..+.+.. .+||..|++.++..++..+..++.||+++. +++.++ . +
T Consensus 146 g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~------------------~---~---- 195 (402)
T PRK11902 146 SGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS------------------L---G---- 195 (402)
T ss_pred HhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch------------------h---H----
Confidence 999988887742 369999999888776665555667776531 000000 0 0
Q ss_pred HhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHHHHHHhhhHHH
Q 043264 264 DMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQS-TIFFVCLLLTGYL 342 (435)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l 342 (435)
++.+++++++++++..+..+....+...... .......+.+.++.|+++++.+......+ ++.+++.++.+++
T Consensus 196 ---~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l 269 (402)
T PRK11902 196 ---EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTL 269 (402)
T ss_pred ---HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 0002234556665554443333333222111 11122334445668999888888876554 5689999999999
Q ss_pred HhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHH----HHHHHhhhccccccceeecccCC
Q 043264 343 IDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRC----FLGVGMALSWGPLPWILNCEILP 418 (435)
Q Consensus 343 ~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p 418 (435)
.||+++|+.+..+..+..+..+.+..... ..++.+....... ..+.+.+.. .+....++.+.+|
T Consensus 270 ~~r~g~~~~l~~~~~~~~l~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 337 (402)
T PRK11902 270 MVRLGLYRSLMLFGVLQAVSNLGYWVLAV-----------TPKHLWTMALAIGIENLCGGMGTAAF-VALLMALCNRSFS 337 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCc
Confidence 99999999887766665555444332211 1123333333332 223333333 3344567788899
Q ss_pred hhhhhhhhH
Q 043264 419 IEVRSAGQG 427 (435)
Q Consensus 419 ~~~r~~~~~ 427 (435)
.+.++...+
T Consensus 338 ~~~~~~~~~ 346 (402)
T PRK11902 338 ATQYALLSA 346 (402)
T ss_pred HHHHHHHHH
Confidence 887775433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=190.72 Aligned_cols=334 Identities=13% Similarity=0.058 Sum_probs=220.4
Q ss_pred ccccch-hhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWK-LTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|+|+++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|... +.
T Consensus 57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~ 135 (511)
T TIGR00806 57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY 135 (511)
T ss_pred CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHh---hhHHHHHHHHHhccCCCChhhHHh
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSV---SGFPATLMTIIAFFIPDTPSSLIQ 230 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~---~~~~~~~~~~~~~~~pesp~~l~~ 230 (435)
..++.+|+|+++|+++.++...+..+|.++++++++.+.. .+||+.+.+ ......+.++..+++|..++.+.-
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f 211 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFF 211 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhh
Confidence 9999999999999999999999999999999999999543 458875433 333444455556788877665544
Q ss_pred cCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhh---ccCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 231 RGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLL---ERKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
+++.++-.....+......+...+. .+..+......++.++ +..+..+.++...+.+....+++.-+..|.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~ 285 (511)
T TIGR00806 212 NRLEDVRGALPCELDQMVPGPGGKL------EDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYV 285 (511)
T ss_pred ccccccccccccccccCCCCCcccc------chhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHH
Confidence 4322110000000000000000000 0000000001111111 122223334444444555555677777787
Q ss_pred HHHHHHcCCC-CCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 308 QLIVTSLGIR-LKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 308 ~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
..+-++..-+ +...|..-++..+.+.+.++..|++-.+..+.-.+.++.....-+.+++... ..++
T Consensus 286 Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-------------~t~~ 352 (511)
T TIGR00806 286 HTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-------------QSHD 352 (511)
T ss_pred HHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-------------cccc
Confidence 7777665322 2245666777777788888888888655544333333333222222222221 4478
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.|...+.-+++...+.+..+ +...-+++....+.-|...|+++.+.
T Consensus 353 Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVA 398 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHH
Confidence 88888888888888877643 33344455555566677777776653
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=193.15 Aligned_cols=302 Identities=12% Similarity=0.069 Sum_probs=198.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc-hhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR-KGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|++..++|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+...+.
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 48999999999999999999999999999999965 77888888888888888889999999999999999987766666
Q ss_pred cchhhh--------cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 153 APIYLV--------EMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 153 ~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
..++.. |......|.+..+ .+|.++++.+++.+... ..|+. |++.++..++..+..+++||+
T Consensus 113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~~-f~~~~~~~~~~~~~~~~~~e~ 182 (418)
T TIGR00889 113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNIQ-LYITAGSSALLGVFALTLPDI 182 (418)
T ss_pred HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhHH-HHHHHHHHHHHHHHHhcCCCC
Confidence 555432 2233334555444 36788888888777321 23543 445555555555555678887
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
|+- +++.++ + .++ ..+.+.++.+|++.....+....+... ......
T Consensus 183 ~~~---~~~~~~-------------~-------------~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~~~~ 228 (418)
T TIGR00889 183 PVA---KSTAKM-------------S-------------IKV-MLGLDAFILFKNKRMAIFFFFSMLLGA----PLQITN 228 (418)
T ss_pred CCC---cccccc-------------C-------------HHH-HhhhhHHHHhcCCCeeeHHHHHHHHHh----HHHHHH
Confidence 630 000000 0 000 001123344444433332222222211 122334
Q ss_pred HHHHHHHHHcCCCC--------CchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 043264 305 VVGQLIVTSLGIRL--------KDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRS 376 (435)
Q Consensus 305 ~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 376 (435)
.+.+.++++.|.++ ...+...+...+..+++.+..+++.||+|+|+.+..+.++.+++..++.....
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~----- 303 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP----- 303 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc-----
Confidence 55566666666554 45688888999999999999999999999999999988887777655543200
Q ss_pred CCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
.....+...+..++.+.+.+... +....++.|.+|++.|++++|+.+.
T Consensus 304 ------~~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i~~~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 304 ------EYFGYALLFLSMIVYGCAFDFFN-ISGSVFVEKEVPVHIRASAQGLFTL 351 (418)
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 01122334455566666655443 3334677899999999999999973
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=190.76 Aligned_cols=302 Identities=12% Similarity=0.059 Sum_probs=184.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---hcc-----chhHHHHHHhhhhcc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---LAV-----NMGMLFLGRVFTGLG 145 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 145 (435)
+|+++.++|++.+++.++..+++++.|+++||+|||+++.++..+..++..... .++ .+....+++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 389999999999999999999999999999999999999887666554433221 111 111223344444444
Q ss_pred ccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC-CCC
Q 043264 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI-PDT 224 (435)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pes 224 (435)
.....+....+..+. .+++++..+......++|..++|.+++.+.+ .+|+..|++.++..++..+..++. ||.
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 121 FLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 433334443433222 3456778888888899999999999998876 359999998887777666555444 333
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
++- +++.++ +.+++++.+.+..++.++++..+...+........ .....
T Consensus 195 ~~~---~~~~~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~----~~~~~ 243 (420)
T PRK09528 195 PST---AKVANA------------------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVACF----YDVFD 243 (420)
T ss_pred cch---hhhccc------------------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHHH----HHHHH
Confidence 210 000000 00000000011223344443332222221111111 12222
Q ss_pred HHHHHHHH----HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCc
Q 043264 305 VVGQLIVT----SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTS 380 (435)
Q Consensus 305 ~~~~~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 380 (435)
.+.|.++. +.+.+..+.+.......+...++.++.|++.||+++|+.+..+..+..+..+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----------- 312 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----------- 312 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------
Confidence 23444432 235555667888888889999999999999999999999888877777766655432
Q ss_pred cccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 381 IFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
++.+..+....+.+.+.+.... ....+..|.+|++.|+++.+.
T Consensus 313 ----~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 355 (420)
T PRK09528 313 ----TGPLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLV 355 (420)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeee
Confidence 2344444545555555544322 224567888999999887654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=193.15 Aligned_cols=370 Identities=18% Similarity=0.195 Sum_probs=252.0
Q ss_pred cCCCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHH
Q 043264 14 EKGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGI 93 (435)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~ 93 (435)
|.+.+.|......+++.+ +.+|.....- ...+.++++| +-+..+++|+.++......
T Consensus 39 PdGG~gWvV~~a~fl~~~--~~~g~~~~~G---v~~~~~~~~f------------------~~s~~~~~~i~sl~~~~~~ 95 (509)
T KOG2504|consen 39 PDGGWGWVVVFASFLVNL--STDGLINSFG---LLFEELMDYF------------------GSSSSQIAWIGSLLLGVYL 95 (509)
T ss_pred CCCCeeeeeeHhHHHHHH--hhhcchheeh---hhHHHHHHHh------------------CCCccHHHHHHHHHHHHHH
Confidence 355667766666555543 3333333221 2235555555 7788889999999999999
Q ss_pred HHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHH-HhhhhccccccccccchhhhcccCCCCcchhhhH
Q 043264 94 FSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLG-RVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTG 172 (435)
Q Consensus 94 i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 172 (435)
+.+|+.+.+.||+|.|.+.++|.++..++.++.++++++|++++. -++.|+|.|..+.....++..++ +|+|+.+.|+
T Consensus 96 ~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi 174 (509)
T KOG2504|consen 96 LAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI 174 (509)
T ss_pred HhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence 999999999999999999999999999999999999999888766 58899999999999999999887 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc-CCCChhhHHhcCCHHHHHHHHHH--------
Q 043264 173 FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF-IPDTPSSLIQRGKVQQALKSLNQ-------- 243 (435)
Q Consensus 173 ~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~~~~-------- 243 (435)
...+.++|.++-|.+...+.+.. |||+.+++.+.+.+-..+.... -|.+++- +++.++..+....
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~---G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~~~~~~~~ 248 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKY---GWRGALLIFGGISLNVLVAGALLRPLSPPK---KPNEEKDLRNSAASVESTPKP 248 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHHHHcCCCCcCC---Cchhhhhhccccccccccccc
Confidence 99999999999999998888864 5999998888777665555433 3433321 0001110000000
Q ss_pred ----HhCCCcCcHH----HHHHHHHHHHHhh-hhccccH----hhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 043264 244 ----VRGTKFDSEN----ELKYLIKYNEDMR-IASETPY----KMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI 310 (435)
Q Consensus 244 ----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (435)
....+....+ +....++.+++.+ ...+... .++++ .+.++...+...+...++.....++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~----~~~fl~~~~~~~~~~~g~~~p~~~l~~~ 324 (509)
T KOG2504|consen 249 VELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK----DPKFLLLALSNLFAYLGFNVPFVYLPSY 324 (509)
T ss_pred cccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000000000 0001111 23333 3456666666666666788888999999
Q ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchH--HHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 311 VTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRI--MLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 311 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.++.|++..++....++.++..++++++.|++.|+...++ ...++.+..+++.+.+.+ ..+.+
T Consensus 325 ~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~---------------~~~~~ 389 (509)
T KOG2504|consen 325 AKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF---------------ATTYV 389 (509)
T ss_pred HhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH---------------hccHH
Confidence 9999999999999999999999999999999999988443 344444444444422222 24445
Q ss_pred HHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.......+++.+.+.. ..+....+.|+.+.+.-..+.|+...++
T Consensus 390 ~l~~~~~~fG~~~g~~-~~l~~~i~~~~~g~~~l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 390 GLIVFSILFGFCVGSF-SSLTPVILVDLVGLEKLSNAYGLLLLFQ 433 (509)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence 6666666666666554 3344456789999999999999877654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=186.05 Aligned_cols=301 Identities=11% Similarity=0.042 Sum_probs=192.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---hcc-----chhHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---LAV-----NMGMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~~ 146 (435)
|.++.+.+++.+++.++..+++++.|+++||+|||+.++.+.....++..... +.+ .+..+++.|++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999987766655443221 121 2344567789999988
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc-CCCCh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF-IPDTP 225 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp 225 (435)
+...+....+..|.. +++++..+......++|..++|.+++.+.+ .+||..|++.++..++..+..+. .||+|
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 114 SAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred ccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888888888877753 334556677778889999999999988765 46999999988777776555444 44443
Q ss_pred hhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHH
Q 043264 226 SSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAV 305 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (435)
+. ++.+ + ..+.++++.+.++.++.++++..+........ . ...+.....
T Consensus 188 ~~-------~~~~------------------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~---~-~~~~~~~~~ 236 (396)
T TIGR00882 188 SS-------ATVA------------------N--ALGANASAFSLKLALELFRQRKFWMFVLYVVG---V-ACVYDVFDQ 236 (396)
T ss_pred hh-------hhhh------------------c--ccccccCCCCHHHHHHHHcCCcHHHHHHHHHH---H-HHHHHHHHH
Confidence 20 0000 0 00000011112234555555443322221111 1 111222333
Q ss_pred HHHHHHHH----cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCcc
Q 043264 306 VGQLIVTS----LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSI 381 (435)
Q Consensus 306 ~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 381 (435)
+.+.++++ .+.+....+.......+...++....+++.||+++|+.+.++..+.++...+....
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~------------ 304 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA------------ 304 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc------------
Confidence 44555443 24455566778888888999999999999999999999888877777765543321
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 382 FSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
.+.+......++.+.+...... ....+..+..|++.++++.+.
T Consensus 305 ---~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~ 347 (396)
T TIGR00882 305 ---TTALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLI 347 (396)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehH
Confidence 2344444555555555433322 223455677788877776654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-21 Score=181.01 Aligned_cols=333 Identities=20% Similarity=0.220 Sum_probs=204.1
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhh
Q 043264 79 WKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLV 158 (435)
Q Consensus 79 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 158 (435)
....|+.+.+.++..+++++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|.... ....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence 5567999999999999999999999999999999999999999999999999999999999999999777664 456689
Q ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCH---H
Q 043264 159 EMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKV---Q 235 (435)
Q Consensus 159 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~---~ 235 (435)
|..|.|+|....++.....-+....++.++..+... .+|||.|++..+...+.++...++..+|++-..+++. .
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~ 233 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKR 233 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHH
Confidence 999999998877776665555555677777666543 4699999999887777665543322333332222211 1
Q ss_pred HHHHHHHHH------------------hCC---CcCcHHHHHHHHH--------HHHHhhhhccc--cHhhhhccCchhH
Q 043264 236 QALKSLNQV------------------RGT---KFDSENELKYLIK--------YNEDMRIASET--PYKMLLERKYRPH 284 (435)
Q Consensus 236 ~a~~~~~~~------------------~~~---~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~ 284 (435)
+..+.++.+ .+. +++...-.-.+.. ..-|.....+. -..++++++ +
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r 310 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---R 310 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---h
Confidence 212222221 010 1111111111000 00111111111 123344432 2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHH-HHHcCCCC---CchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHH-HHhHHHH
Q 043264 285 LLFAIALPTFQALTGFNLNAVVGQLI-VTSLGIRL---KDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIML-IVGGCQI 359 (435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~ 359 (435)
.+....+..+.....++....+.|.. ...++-++ ...++.....+.+..++..+.+.+..+++|-|.. +++...+
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ 390 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM 390 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 22222222222222233333344443 33344443 3567778888889999999999999988875544 5665555
Q ss_pred HHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 360 FICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 360 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
.+++.++... ..++....+...++.+++.+....+. .+.+.-..|++.-+++.|+..++
T Consensus 391 ta~~Gama~~-------------~~~n~~~~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~ 449 (599)
T PF06609_consen 391 TAFCGAMAAV-------------RPDNKNAAIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSI 449 (599)
T ss_pred HHHHHHHHHc-------------cCCCcchHHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHH
Confidence 5544444332 11222233444556666666554444 35556778999999998877654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=170.53 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=236.7
Q ss_pred hhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH
Q 043264 34 LMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI 113 (435)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~ 113 (435)
++.|+......... |++++.| +++..+.+.+...++.|+.+++++.|.+.+|+|+|+.++
T Consensus 23 fl~G~~~~l~diLi--p~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~ 82 (422)
T COG0738 23 FLWGFITCLNDILI--PHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV 82 (422)
T ss_pred HHHHHHhhcchhhH--HHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 66677777666543 7888887 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 043264 114 IGGIIYLIGVSLHA---LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYF 190 (435)
Q Consensus 114 ~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 190 (435)
++..++++++.+.. -..++..++++-|+.|.|.+...+....++....++++..+.+++.+...++|.+++|++++.
T Consensus 83 lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 83 LGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999885 557889999999999999999999999999999999888999999999999999999999998
Q ss_pred HhhcC----------------CCCcchHHHHhhhHHHHHHHHHhcc--CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcH
Q 043264 191 IMSSL----------------NFKRWRIAVSVSGFPATLMTIIAFF--IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSE 252 (435)
Q Consensus 191 l~~~~----------------~~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 252 (435)
+.... ....||++|...+...++..+.... .||.+.
T Consensus 163 lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-------------------------- 216 (422)
T COG0738 163 LILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-------------------------- 216 (422)
T ss_pred HHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------------------------
Confidence 87731 0124788887777665555554332 444321
Q ss_pred HHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHH
Q 043264 253 NELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTI 331 (435)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 331 (435)
.+++..+.++....+++++++.+.-.+..+++... ......+++.++.+ .|.+..++....+....+
T Consensus 217 --------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~ 284 (422)
T COG0738 217 --------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVG 284 (422)
T ss_pred --------ccccccccccchHHHHHhChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 00000111011455666666555545555444443 56677788888877 888999999999999999
Q ss_pred HHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccce
Q 043264 332 FFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWI 411 (435)
Q Consensus 332 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (435)
.++|++++.++..|+...|.+.+...+..+.++...+. +..+.+....+.+.+.+..++.+ +.
T Consensus 285 ~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~----------------~g~v~~~~l~~ig~F~simfPTI-fs 347 (422)
T COG0738 285 FMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI----------------GGVVALYALFLIGLFNSIMFPTI-FS 347 (422)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh----------------cChHHHHHHHHHHHHhHHHHHHH-HH
Confidence 99999999999999999888877666555555555443 12455566677777777776544 56
Q ss_pred eecccCCh
Q 043264 412 LNCEILPI 419 (435)
Q Consensus 412 ~~~e~~p~ 419 (435)
...+..|+
T Consensus 348 lal~~l~~ 355 (422)
T COG0738 348 LALKNLGE 355 (422)
T ss_pred HHHhccCc
Confidence 66777773
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=183.69 Aligned_cols=344 Identities=12% Similarity=0.052 Sum_probs=214.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 38899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCCCC---cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC----CCCh
Q 043264 153 APIYLVEMAPTKW---RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI----PDTP 225 (435)
Q Consensus 153 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~----pesp 225 (435)
..++++|++|+++ |+++.++.+.+.++|..+||.+++.+.+.. +||+.|.+.++..++..+...+. ++.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~---g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY---GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 9999999998754 888999999999999999999999998754 59999988776555444333222 2222
Q ss_pred hhHHhcCCHHHHHHHHHH--------------HhCCCcCcHHHHHHHH-----HHHHHhhhhccccHhhhhccCchhHHH
Q 043264 226 SSLIQRGKVQQALKSLNQ--------------VRGTKFDSENELKYLI-----KYNEDMRIASETPYKMLLERKYRPHLL 286 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (435)
+.- ++.+.++.+..... ....+........... ........+ + ...+..+++ ...+
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~--~~~~ 274 (475)
T TIGR00924 200 SVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK-P-RLDAVARNK--MYAY 274 (475)
T ss_pred CCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHhH--HHHH
Confidence 100 00000100000000 0000000000000000 000000000 0 000010111 1112
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCC----chHHHHHHHHHHHHHHHhhhHHHHhhhcc-----hHHH--HH
Q 043264 287 FAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLK----DVFPILIIQSTIFFVCLLLTGYLIDRVGR-----RIML--IV 354 (435)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~~~--~~ 354 (435)
+...+........+.......+.+.++ .+.+.. ..+.+.+...+..++..++..++..|++| +... .+
T Consensus 275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~ 354 (475)
T TIGR00924 275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence 222222222122222333334443332 232211 25677888888888887775554444433 2333 56
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 355 GGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 355 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
|.++.+++...+.+....... . ...+.++.+...++.+.+.... .|....+..|..|++.||+++|+....
T Consensus 355 G~~l~~~~~~~~~~~~~~~~~-~-----~~~s~~~~i~~~~~~~~ge~~~-~p~~~~~~~~~aP~~~~g~~~g~~~l~ 425 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWFADA-G-----GLTSPWFMVLIYLFQTLGELMI-SPLGLSWWTKIAPQRLMGQMLGMWFLA 425 (475)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-C-----CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777777777666543221110 0 1356777777888888886666 556678889999999999999988754
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=183.32 Aligned_cols=339 Identities=10% Similarity=0.078 Sum_probs=207.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhccchhH-HHHHHhhhhcccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAVNMGM-LFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~ 151 (435)
+|++.++.+++.+.+.....+..+++|+++|| +||||++..+.+++.+++++++++++... ++++|+++|+|.|...+
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 38899999999999999999999999999999 99999999999999999999999877554 45899999999999999
Q ss_pred ccchhhhcccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhH-
Q 043264 152 TAPIYLVEMAPTK--WRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL- 228 (435)
Q Consensus 152 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l- 228 (435)
...+++.|.+|++ +|+++.++++.+.++|..++|.+++++.+.. |||+.|++.++..++..+.....++..+-.
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~ 201 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLIIALLVYFACRGMVKDIG 201 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHcchhhcccC
Confidence 9999999999877 4577899999999999999999999998865 599999887554333333333333211100
Q ss_pred --HhcCCHHHHHHHH------------HHHhCCCcCcHHHHHHHHH------HHHHhhhhccccHhhhhccCchhHHHHH
Q 043264 229 --IQRGKVQQALKSL------------NQVRGTKFDSENELKYLIK------YNEDMRIASETPYKMLLERKYRPHLLFA 288 (435)
Q Consensus 229 --~~~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (435)
..+++.|.....+ ....... ........... ...++.+. + +.+|+ +.+..
T Consensus 202 ~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~f~~~~~~~---~--~~~r~----r~~~~ 271 (489)
T PRK10207 202 SEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV-EVANLVLIVLSIVVTIIFFREAFKL---D--KTGRN----KMFVA 271 (489)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcC---C--HHHHH----HHHHH
Confidence 0000111100000 0000000 00000000000 00000000 0 12222 21111
Q ss_pred HHH--HHHHHhhchhHHHHHHHHHHHH-c-----CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchH-------HHH
Q 043264 289 IAL--PTFQALTGFNLNAVVGQLIVTS-L-----GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRI-------MLI 353 (435)
Q Consensus 289 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~ 353 (435)
..+ ........+.......+.+.++ . |+.. ..........+..++..++.+++.||+++|+ .+.
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~ 350 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFT 350 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 111 1111111122222333444432 2 2211 2234455556667778888899999999886 366
Q ss_pred HhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 354 VGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 354 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+|.++.+++.+.+..........+ ...+.|+.+...++.+.+..... |....++.+..|++.++.++|+.+..
T Consensus 351 ~G~~l~~~~~~~~~~~~~~~~~~~-----~~~s~~~~i~~~~l~g~Ge~~~~-~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 351 LGMFLCSLGFLTAAAAGMWFADAQ-----GLTSPWFIVLVYLFQSLGELFIS-ALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-----CccCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 777777766654432111011100 12345666677777777776664 44457778899999999999998754
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=192.48 Aligned_cols=309 Identities=17% Similarity=0.136 Sum_probs=204.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh----ccchh-HHHHHHHHHHHHHHHHHhccc------hhHHHHHHhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS----AGRKG-ALIIGGIIYLIGVSLHALAVN------MGMLFLGRVFT 142 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 142 (435)
+|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++.+.++ ...+++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 49999999999999999999999999999997 78755 566788888888888877664 35667788888
Q ss_pred hccccccccccchhhhccc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC----CCCcchHHHHhhhHHHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMA-PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL----NFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~----~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
+++.+...++..++..|.. ++++|++..++.+.+..+|..+++.+.+.+.... ...+||+.+.+.+++.++..+.
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888887 4688999999999888888887777665554322 2357999998888877766554
Q ss_pred -hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHH
Q 043264 218 -AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQA 296 (435)
Q Consensus 218 -~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
.+..||.++. .+ ++ ++++.+.++.++.+++++........ .+..
T Consensus 190 ~~~~~~e~~~~----~~-~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ 234 (437)
T TIGR00792 190 CFFGTKERYSE----IP-KN--------------------------IEKKLSLKQIFKALFKNDQLLILCLA----YLFY 234 (437)
T ss_pred HHcCCEecCCC----CC-cc--------------------------cccCCCHHHHHHHHhCCHHHHHHHHH----HHHH
Confidence 4556765410 00 00 00000001223344443332222222 2222
Q ss_pred hhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 043264 297 LTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375 (435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 375 (435)
.........+.+++.+. .+ ++...+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------ 307 (437)
T TIGR00792 235 NLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA------ 307 (437)
T ss_pred HHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------
Confidence 22223333344444433 33 44556667777789999999999999999999999988887777766555432
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCC-------hhhhhhhhHHHHhhh
Q 043264 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILP-------IEVRSAGQGLSTAIS 433 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~ 433 (435)
+ .+.+...+..++.+++.+... +..+++.+|..| ++.+|++.|+.+...
T Consensus 308 -------~-~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 363 (437)
T TIGR00792 308 -------G-SNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVR 363 (437)
T ss_pred -------c-hhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHH
Confidence 1 233444445555556655543 344566677765 456788888887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=187.33 Aligned_cols=306 Identities=15% Similarity=0.099 Sum_probs=222.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 149 (435)
.-|+..++++..+..+...+.++++|.++||+.||++++.+-++..+..+..++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999999999999999888776655444332 46788999999999999999
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHH
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLI 229 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~ 229 (435)
.|+..+++.|..|+++...++++.+...++..++||.++|.+....+ -.+.|.+.++..++........+..++
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G---~~~~f~inalsfl~~i~~l~~~~~~~~--- 194 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG---AAAAFLINALSFLISILALLRWKPPPP--- 194 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcccccc---
Confidence 99999999999999999999999999999999999999999988654 667888877665554444333332211
Q ss_pred hcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH
Q 043264 230 QRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL 309 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
+++. ..+. -.++-+..++-..+++..+..+....+..+ ........+|.
T Consensus 195 -~~~~---------------~~e~-----------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l----~~~a~~aLlPl 243 (524)
T PF05977_consen 195 -PSSL---------------PRER-----------FFSALREGLRYVRSSPPLRSVLLRSFLFNL----FASAVWALLPL 243 (524)
T ss_pred -cccc---------------chhh-----------hhhhHHHHHHHHhcchHHHHHHHHHHHHHH----hhhHHHHhhhH
Confidence 0000 0000 000012223333333332222222222111 12334455777
Q ss_pred HHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 310 IVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 310 ~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
+.+ .+|.++...|++.+..+++.++|.++.+++.+|+++++.+..+.+..+++.+.+++. .+.+
T Consensus 244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---------------~~~~ 308 (524)
T PF05977_consen 244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---------------PSFW 308 (524)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---------------hHHH
Confidence 764 578888899999999999999999999999999999988888887777776666543 4556
Q ss_pred HHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...+.+++.|.+......+. .+...+..|++.||++.++.+++.
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~ 352 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVF 352 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHH
Confidence 66667777777766655444 466789999999999999987754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=182.84 Aligned_cols=327 Identities=14% Similarity=0.095 Sum_probs=208.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc------cchhHHHHHHhhhhccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA------VNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~ 148 (435)
|+|..+++++.++. ....+++++.|++.||+|||+++.++.+++.+++++++++ ++++.+++.|++.|+|.+.
T Consensus 58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~ 136 (591)
T PTZ00207 58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCML 136 (591)
T ss_pred CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHH
Confidence 89999999998874 4455678889999999999999999999999999999997 6899999999999999999
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHHHHHH-HHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hcc--CCCC
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAG-ASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFF--IPDT 224 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~--~pes 224 (435)
..+.+...+.+++| ++||++.++...+.++|..+ +++...++.+ +|+..|++.++..++..+. ..+ .|++
T Consensus 137 ~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr~p~~ 210 (591)
T PTZ00207 137 FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----NTSAYFFFLMSFALVVGILAIVFMRLPPF 210 (591)
T ss_pred HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhheeCCcc
Confidence 99999999999996 78999999999999999975 4444444432 4888777777666665444 333 4555
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCC------------------------------------cCcH----------------
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTK------------------------------------FDSE---------------- 252 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~------------------------------------~~~~---------------- 252 (435)
|+|..++++.+++++..++..+.. ....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~ 290 (591)
T PTZ00207 211 HLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIF 290 (591)
T ss_pred hhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 666545544444433322211110 0000
Q ss_pred --------------------HHHHHHHH-HHH--Hhh------------hhccccHhhhhccCchhHHHHHHHHHHHHHh
Q 043264 253 --------------------NELKYLIK-YNE--DMR------------IASETPYKMLLERKYRPHLLFAIALPTFQAL 297 (435)
Q Consensus 253 --------------------~~~~~~~~-~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (435)
.+..+..+ ..+ +++ ++..+++.+. .++.-+++++...++..
T Consensus 291 p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~----l~~~d~Wll~~~~~cg~ 366 (591)
T PTZ00207 291 PFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEG----LKTARLWCLLWSIFCCV 366 (591)
T ss_pred HHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHH----HhchhHHHHHHHHHHhh
Confidence 00000000 000 000 0000012222 22333455555555555
Q ss_pred hchhHHHHHHHHHHHHc-CCCCCc--hHHHHHHHHHHHHHHHhhhHHHHhhhcchH---------HHHHhHHHHHHHHHH
Q 043264 298 TGFNLNAVVGQLIVTSL-GIRLKD--VFPILIIQSTIFFVCLLLTGYLIDRVGRRI---------MLIVGGCQIFICQVI 365 (435)
Q Consensus 298 ~~~~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~---------~~~~~~~~~~i~~~~ 365 (435)
.........+..+.+.+ |.+.+. ...+.+..++.+.+|++..|++.....+|+ .+.+..+ +.++.++
T Consensus 367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~ll 445 (591)
T PTZ00207 367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLT 445 (591)
T ss_pred CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHH
Confidence 54555566677777777 773333 233778899999999999998873332222 2233333 4444444
Q ss_pred HHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 366 LAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
+.+.. + ...+.+..++.+++++..++.. ...++|+|. ++-|+-+-+..
T Consensus 446 l~~~~------------p---~~~L~~~~~lvg~~~G~~~~~~-~~i~selFg-k~~g~~yN~~~ 493 (591)
T PTZ00207 446 LFLTL------------P---KAALPLPYFIAAFANGFMAATI-ALVTRTIFA-KDPAKHYNFCF 493 (591)
T ss_pred HHHHC------------C---ccHhHHHHHHHHHHhhHhHHHH-HHHHHHHhc-cchHHHhhHHh
Confidence 44321 1 1356667777888888876655 466799999 77777665544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=162.57 Aligned_cols=301 Identities=17% Similarity=0.162 Sum_probs=229.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|+|.+..|.++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+......
T Consensus 42 ~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLL 120 (395)
T COG2807 42 LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLL 120 (395)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhh
Confidence 49999999999999999999999999999999999999999999999999999888 77889999999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGK 233 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~ 233 (435)
+..+.+.+| |+-+..++++.++.++|..+++.++..+.++. .+||....+.+.++++.++.++ |...|. +
T Consensus 121 PslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~ 190 (395)
T COG2807 121 PSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWL--PQALRE-----Q 190 (395)
T ss_pred hHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHh--hhcccc-----c
Confidence 999999996 45799999999999999999999999998875 3699999999998888776543 322110 0
Q ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 043264 234 VQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS 313 (435)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (435)
..+.+.+..+...+++++.-+. ..+++..+...++....|+|.++.+
T Consensus 191 -----------------------------~~~~~~~~~~~~~vw~~~~aW~----vtLfmGlqS~~~Y~~~~WLP~ili~ 237 (395)
T COG2807 191 -----------------------------AASIATKLVSVRKVWRSPLAWQ----VTLFMGLQSLLYYIVIGWLPAILID 237 (395)
T ss_pred -----------------------------ccccccccccccccccCchhHH----HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0011111222334555554444 3344444444588899999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh-cchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV-GRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.|+|+++++.+.+...+..++.++....+.+|. .+|+.......++.++.+.+.+. +.+..+..
T Consensus 238 ~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-------------P~~~~~lw-- 302 (395)
T COG2807 238 RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-------------PGQLPILW-- 302 (395)
T ss_pred cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-------------hhhHHHHH--
Confidence 999999999999999999999999999999975 55666666677777777666653 33333322
Q ss_pred HHHHHHHHhhhccccccceeeccc-CChhhhhhhhHHHHhhhcC
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEI-LPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~l 435 (435)
+++++.+.+..+. +....+... -.++..+.-.|+.+.++|+
T Consensus 303 -~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYl 344 (395)
T COG2807 303 -ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYL 344 (395)
T ss_pred -HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHH
Confidence 3556666554433 333333343 3456677777788877764
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=174.74 Aligned_cols=284 Identities=16% Similarity=0.106 Sum_probs=207.1
Q ss_pred HHHHHHHHhhhhhhhhhhcccccccchHHHHhhcc-------chhhhcc-------------------------cccccC
Q 043264 24 IICIAVASAGLMYGYDIGINGGITKAESFLKKFFP-------SVLRSQK-------------------------NAKVVD 71 (435)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-------------------------~~~~~~ 71 (435)
.+...++++.+.+++...++.+.. |.+..+... ....... ..+-++
T Consensus 21 lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 98 (464)
T KOG3764|consen 21 LILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEA 98 (464)
T ss_pred eEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhc
Confidence 334445555678888888887664 777776641 0000000 000012
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccc
Q 043264 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
+..+-+++++|++.+...+.+.+.+++.|.+.||+|+|-.+++|.+.....++++++.++++.++++|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHh
Q 043264 152 TAPIYLVEMAPTKW-RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQ 230 (435)
Q Consensus 152 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~ 230 (435)
+..++++|.+|+++ |++++|+.-.+.++|..+||+.++.+.+..| .+.+|++.+++.++-..+.+++-|+.+
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---k~aPFlVL~~v~Lld~~L~l~vi~p~~---- 251 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---KSAPFLVLAIVLLLDGALQLLVIEPTE---- 251 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC---CcCcHHHHHHHHHHHHHHHHheeCccc----
Confidence 99999999998765 7999999999999999999999999999765 999999999998888777655433211
Q ss_pred cCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHH-
Q 043264 231 RGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQL- 309 (435)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 309 (435)
.++++.++..+++++++.+... .......+++.. ....--.++.
T Consensus 252 -------------------------------~~~~~~~~~~~~~~Ll~dP~I~---~~agai~~~n~~-lafLePtlslw 296 (464)
T KOG3764|consen 252 -------------------------------MDPDSTEQGTPMWSLLMDPYIL---LIAGAITFSNSS-LAFLEPTLSLW 296 (464)
T ss_pred -------------------------------cCccccccCccHHHHHhCchHh---hhhcchhhccch-HHHhCcccHHH
Confidence 0001122244566666544322 222222222111 1111122223
Q ss_pred HHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHH
Q 043264 310 IVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIM 351 (435)
Q Consensus 310 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 351 (435)
..++..-+.-+.+.......+...+++.+.|.+.||++..+.
T Consensus 297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w 338 (464)
T KOG3764|consen 297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW 338 (464)
T ss_pred HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence 235566444478899999999999999999999999994433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=173.27 Aligned_cols=332 Identities=11% Similarity=-0.016 Sum_probs=205.7
Q ss_pred HhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHH--HHHHHHHHHHHHHhHH-Hhhhhcc
Q 043264 31 SAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAY--NSSLYIAGIFSALMAG-RLTTSAG 107 (435)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~i~~~~~g-~l~dr~G 107 (435)
..++.+|...+...+. +|.+.++. |.|.+++|.+ .++..+...+.+|+.+ +..||+|
T Consensus 8 ~ly~~~g~~~~~~~p~--lp~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g 67 (390)
T TIGR02718 8 LLYLSQGIPIGLAMDA--LPTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLG 67 (390)
T ss_pred HHHHHHHhHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 3447777777666544 35555555 8999999997 4677888888888884 5799999
Q ss_pred chhHHHHHHHHH-HHHHHHHH-h--ccc-hhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHH
Q 043264 108 RKGALIIGGIIY-LIGVSLHA-L--AVN-MGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVA 182 (435)
Q Consensus 108 rr~~l~~~~~~~-~~~~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 182 (435)
|||.+++.+.+. .+.....+ + ..+ ..+++..-++.++..+...+....+..|..++++++...+....+..+|.+
T Consensus 68 ~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~ 147 (390)
T TIGR02718 68 RRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF 147 (390)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH
Confidence 999986665332 22222222 2 222 334455556666777777788888888888888888888888888899999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHH
Q 043264 183 GASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYN 262 (435)
Q Consensus 183 ~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+++...+.+.+.. +||..|++.++..++..+..++++|+++ .+++ +
T Consensus 148 ~g~~~~~~l~~~~---gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~--~-------------------------- 193 (390)
T TIGR02718 148 GGGAGTLVLFGKF---GQRPAFLLVACVPLASLVCVLWLKDRAV---ASPE--A-------------------------- 193 (390)
T ss_pred HHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc--c--------------------------
Confidence 9998888888764 5999999998887766555545444321 0000 0
Q ss_pred HHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHH-HHHHHHhhhHH
Q 043264 263 EDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQST-IFFVCLLLTGY 341 (435)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~ 341 (435)
++++..+.++.+|++..+.......+... .......+.+.++++.|+++++.+......++ ..+++.++.|+
T Consensus 194 ---~~~~~~~~~~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 194 ---PLARRASLFRFFRRPLAWSLLALALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred ---chhhHHHHHHHHcCcCHHHHHHHHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00001234455555443333332222222 13344456677777889999999998887764 66777899999
Q ss_pred HHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCCh-h
Q 043264 342 LIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPI-E 420 (435)
Q Consensus 342 l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~ 420 (435)
+.||+|+|+.+..+..+.++..+....... .. .....+.......+.++..+....+. .....+..++ +
T Consensus 267 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 336 (390)
T TIGR02718 267 LVRRAGLWRTFILGVGLAGSLALLWFAQAA-FW--------LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGD 336 (390)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-cc--------cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCccc
Confidence 999999999988776655333222221110 00 01112222222233333334443333 2343455555 8
Q ss_pred hhhhhhHHHHhhh
Q 043264 421 VRSAGQGLSTAIS 433 (435)
Q Consensus 421 ~r~~~~~~~~~~~ 433 (435)
.+++.+++.++..
T Consensus 337 ~~g~~~~~~~~~~ 349 (390)
T TIGR02718 337 QAGTDVTAVQSTR 349 (390)
T ss_pred chHHHHHHHHHHH
Confidence 8999999888764
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=168.15 Aligned_cols=334 Identities=13% Similarity=0.131 Sum_probs=209.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhh----hccchhHHHHH-HHHHHHHHHHHHhccchh----------------
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTT----SAGRKGALIIG-GIIYLIGVSLHALAVNMG---------------- 133 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~---------------- 133 (435)
|++..+.+++..+..+...+.+|+.|.++| |+||||.++++ .+...++.++.+++++..
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999999874 666666667777776643
Q ss_pred -HHHHHHhhhhccccccccccchhhhcccCCCCc--chhhhHHHHHHHHHHHHHHHHHHHHh--hcCC----------CC
Q 043264 134 -MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWR--GAIGTGFQIFFWSGVAGASWINYFIM--SSLN----------FK 198 (435)
Q Consensus 134 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l~--~~~~----------~~ 198 (435)
.++++-.+..++.+...++..++++|.+|+++| +.+.++.+...++|.++|+.+++... +..+ ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 223333344457777888899999999998865 57899999999999999999998752 2110 12
Q ss_pred cchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhh
Q 043264 199 RWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLL 277 (435)
Q Consensus 199 ~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (435)
+.|..|++.++..++..+. .+..+|.|.. .+++.++ ++.+ +.++.+.+..+++++
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~----------------~~~~------~~~~~~~~~~~~~i~ 250 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN----------------SEAA------PPSKHGEEAFFGELF 250 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh----------------hhcc------cccccchhhhHHHHH
Confidence 5788999988877776665 4558887631 1100000 0000 000000112233333
Q ss_pred cc-CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH--cCCCCCc----------hHHHHHHHHHHHHHHHhhhHHHHh
Q 043264 278 ER-KYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS--LGIRLKD----------VFPILIIQSTIFFVCLLLTGYLID 344 (435)
Q Consensus 278 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~----------~~~~~~~~~~~~~~~~~~~g~l~d 344 (435)
+. +..++.+...++..++.+.+...+..|.+.+..+ ++-++.+ ..+......+...+.+++..++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1112222233333333344455666666666532 3322211 123345556666677778888999
Q ss_pred hhcc-hHHHHHhHHHHHHHHHHHHHHHHhhcc--C-CC-Cccc--cchhhHHHHHHHHHHHHHhhhccccccceeecccC
Q 043264 345 RVGR-RIMLIVGGCQIFICQVILAILMASESR--S-HG-TSIF--SKRSAFVALILRCFLGVGMALSWGPLPWILNCEIL 417 (435)
Q Consensus 345 ~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 417 (435)
|+|+ |+...++.++.++++....+......+ . ++ +... +....+..++.+...|+..+.. ..++++++++..
T Consensus 331 ~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~ 409 (477)
T TIGR01301 331 GWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRS 409 (477)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHc
Confidence 9985 566677777777777776654321110 0 00 0000 0111366777777888887766 457889999999
Q ss_pred Chh--hhhhhhHHHHhhh
Q 043264 418 PIE--VRSAGQGLSTAIS 433 (435)
Q Consensus 418 p~~--~r~~~~~~~~~~~ 433 (435)
|++ ..|..+|+.|.+-
T Consensus 410 ~~~~~~~G~~mgilN~~I 427 (477)
T TIGR01301 410 SNLGAGQGLSMGVLNLAI 427 (477)
T ss_pred cccCCCCcchhhHHHHHH
Confidence 954 5588999888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=168.13 Aligned_cols=338 Identities=11% Similarity=0.035 Sum_probs=199.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhcccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 151 (435)
+|++..+.+++.+.+........+++|+++|| +|||+++..+.++..++..++++++ +.+.+.++|+++|++.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 38899988888888776766777899999999 5999999999999999999998874 566777889999999999999
Q ss_pred ccchhhhcccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh----ccCCCCh
Q 043264 152 TAPIYLVEMAPTKW--RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA----FFIPDTP 225 (435)
Q Consensus 152 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~----~~~pesp 225 (435)
...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+.. |||+.|.+.++..++..+.. ..++|.+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~---g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY---GWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 99999999998654 446788889999999999999999998854 59999998876544433322 2233321
Q ss_pred hhHHhcCCHHHHHHH-----------HHHHhCCCcCcHHHHHHHHHH---HHHhhhhccccHhhhhccCchhHHHHHHHH
Q 043264 226 SSLIQRGKVQQALKS-----------LNQVRGTKFDSENELKYLIKY---NEDMRIASETPYKMLLERKYRPHLLFAIAL 291 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (435)
+- ..+++.|..... .......+.+........... ....+.. . ..++..+++.+....+
T Consensus 209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~ 281 (500)
T PRK09584 209 SK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEA--F----AMKGAARRKMIVAFIL 281 (500)
T ss_pred CC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--h----hcCHHHHHHHHHHHHH
Confidence 10 000011110000 000000000000000000000 0000000 0 0001112222222111
Q ss_pred HHHHHhhchhHHHHHHHHHHHH---cCCCC------CchHHHHHHHHHHHHHHHhhh----HHHHhhhcchHHHHHhHHH
Q 043264 292 PTFQALTGFNLNAVVGQLIVTS---LGIRL------KDVFPILIIQSTIFFVCLLLT----GYLIDRVGRRIMLIVGGCQ 358 (435)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~---~g~s~------~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~~~~~~ 358 (435)
. ... ..++......+..+.. .+.+. .......+...+..++..++. +++.+|++..+.+.++.++
T Consensus 282 ~-~~~-i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l 359 (500)
T PRK09584 282 M-LEA-IIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVL 359 (500)
T ss_pred H-HHH-HHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHH
Confidence 1 111 1122222333333221 11111 124556666776666666666 4444555555777888888
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 359 IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 359 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
.+++.+.+........ .+ ...+.++.+...++.+++.... .|....++.+..|++.||+++|+..
T Consensus 360 ~~l~f~~l~~~~~~~~-~~-----~~vs~~~~~~~~~l~~~ge~~~-~p~g~s~~~~~aP~~~rg~~~g~~~ 424 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN-DA-----GIVSVNWLIASYGLQSIGELMI-SGLGLAMVAQLVPQRLMGFIMGSWF 424 (500)
T ss_pred HHHHHHHHHHHHHhcC-CC-----CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 8888877765432111 00 1133455666666676665544 5666788889999999999999764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=161.08 Aligned_cols=307 Identities=16% Similarity=0.129 Sum_probs=210.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc-chhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG-RKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|+|..|+|.+.++..+...++++++|.++||++ +||.+.+..++.++........++++.+++.-++..+......|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 5777778888888877777888899988888888888888888888
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHH-HHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWI-NYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRG 232 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~ 232 (435)
.++..+... ++++-.+-.-...++|.+++... ...+....+..+....+++.+...++.....+.+|+.|+ ++
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~---~~- 186 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPP---KR- 186 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcc---cc-
Confidence 888888775 33444455555666666665443 222332222122334556666555555555566787762 00
Q ss_pred CHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 043264 233 KVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT 312 (435)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (435)
+.+ ++.++....+..+++|++.....++...+. .........|.+.+++
T Consensus 187 ~~~---------------------------~~~~~~~~~~~~~llk~~~~~~Fll~~~l~----~~~~~~~~~f~~~yl~ 235 (400)
T PF03825_consen 187 SAK---------------------------ESVKKLLGLDALKLLKNPRFLVFLLAAFLI----GISHAAYYTFFSIYLQ 235 (400)
T ss_pred ccC---------------------------CCcccccchHHHHHhcCccHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 000 000001112223455554433322222222 2225566778888888
Q ss_pred HcC-CCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHH
Q 043264 313 SLG-IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVAL 391 (435)
Q Consensus 313 ~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+.| .+....+...++..+++++.-...+++.+|+|.++++.++.+..++=..++.... ++.+...
T Consensus 236 ~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--------------~~~~~~~ 301 (400)
T PF03825_consen 236 ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--------------DPWPFIV 301 (400)
T ss_pred HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--------------CCcHHHH
Confidence 887 7777788888899999999999999999999999999999998888877776541 1222222
Q ss_pred ----HHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 392 ----ILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 392 ----~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
....+.+..++..+... ..|+.+..|++.|++++++.+++.
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~ 346 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALS 346 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHH
Confidence 22345777777665544 467899999999999999987754
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-17 Score=151.95 Aligned_cols=346 Identities=14% Similarity=0.078 Sum_probs=195.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc-cchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-GRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|+++.+.+.+.+.+.....++++++|+++||+ ||||++.++.++..++.++.+..+ +...+.++..+.++|.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999999 999999999999999988776543 2233444444555666777787
Q ss_pred cchhhhcccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhH-H
Q 043264 153 APIYLVEMAPTK--WRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL-I 229 (435)
Q Consensus 153 ~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l-~ 229 (435)
..++++|.+|++ +|..+.++...+.++|..++|.+.+++.+.. ||++.|.+.++..++..+......+...-. .
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~---Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY---SWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh---ChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 889999999875 6888999999999999999999999998754 599999887654444333322211110000 0
Q ss_pred hcCCHHHHHHHHHHHhCC---CcCcHHHHH-H-HHHHHHHhh-h----hccc----cHhhhhccCchhHHHHHHHHHHH-
Q 043264 230 QRGKVQQALKSLNQVRGT---KFDSENELK-Y-LIKYNEDMR-I----ASET----PYKMLLERKYRPHLLFAIALPTF- 294 (435)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~-~-~~~~~~~~~-~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 294 (435)
.+.+..+.++........ -........ . ..+...... . ..-. -.+.-.++..+++......+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~ 277 (493)
T PRK15462 198 VNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFS 277 (493)
T ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHH
Confidence 000000000000000000 000000000 0 000000000 0 0000 00000011122232221111111
Q ss_pred -HHhhch----hHHHHHHHHHHHH--cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcc--h-----HHHHHhHHHHH
Q 043264 295 -QALTGF----NLNAVVGQLIVTS--LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGR--R-----IMLIVGGCQIF 360 (435)
Q Consensus 295 -~~~~~~----~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~-----~~~~~~~~~~~ 360 (435)
..+..+ ...+.|.....+. .|+.. ...+..++..+..++.+++..++-.|..+ | .-..+|.++.+
T Consensus 278 ~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g 356 (493)
T PRK15462 278 MLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMS 356 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 111111 1122222211111 23322 24567788888888888877777566532 2 12566777778
Q ss_pred HHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 361 ICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 361 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
++.+++.+....... + ...+.++.+...++...+ ....+|+..+.++++.|++.|+..+|+...
T Consensus 357 ~~f~~l~~~~~~~~~-~-----~~~s~~wl~~~~~~~t~g-El~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 357 AGFCILTLSARWSAM-Y-----GHSSLPLMVLGLAVMGFA-ELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred HHHHHHHHHHhhcCC-C-----CCcCHHHHHHHHHHHHHH-HHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 877766554322111 1 113455566666666555 556688988999999999999999998654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=166.19 Aligned_cols=296 Identities=19% Similarity=0.238 Sum_probs=212.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhh----hccchhHHH-HHHHHHHHHHHHHHhc-c-------chhHHHHHHh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTT----SAGRKGALI-IGGIIYLIGVSLHALA-V-------NMGMLFLGRV 140 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~ 140 (435)
+|+++..+|.+..+.-+..++..|+.|.++| |+||||..+ ++.+..+++.+++... + ....+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 4899999999999999999999999999999 899877666 5778888877777766 4 2234567777
Q ss_pred hhhccccccccccchhhhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCC----CcchHHHHhhhHHHHHHH
Q 043264 141 FTGLGIGFINQTAPIYLVEMAP-TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNF----KRWRIAVSVSGFPATLMT 215 (435)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~----~~wr~~~~~~~~~~~~~~ 215 (435)
+..++......+..++..|..+ +++|.+..+.-..+..+|.++...+...+.+..++ .+|++...+.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7789999999999999999997 46899999999998888887777776666654432 279999888888777766
Q ss_pred HHh-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHH
Q 043264 216 IIA-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTF 294 (435)
Q Consensus 216 ~~~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (435)
+.. +..+|.++ + .+.++++.+-++.++++++++.....+....+.
T Consensus 192 ~i~~~~~ke~~~------~--------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~-- 237 (428)
T PF13347_consen 192 LITFFFVKERSV------E--------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQ-- 237 (428)
T ss_pred hhhhheeeeccc------c--------------------------ccccccccccccchhhhcccchHHHHHHHHHHH--
Confidence 554 44666211 0 000111111233455555554444333333322
Q ss_pred HHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhh
Q 043264 295 QALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373 (435)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 373 (435)
..+........+++.+. .|.+ ...+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+.
T Consensus 238 --~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~---- 310 (428)
T PF13347_consen 238 --WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL---- 310 (428)
T ss_pred --HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH----
Confidence 22344444555666554 4544 456677778889999999999999999999999999999999888877765
Q ss_pred ccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChh
Q 043264 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIE 420 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 420 (435)
+..+.+...+...+.+.+.+..+ ...+.+.+|+.+.+
T Consensus 311 ---------~~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 311 ---------GPGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYD 347 (428)
T ss_pred ---------HhhhHHHHHHHHHHhHhhhcccc-cccccccccchhhH
Confidence 22567777888888888887775 46678889998754
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=162.67 Aligned_cols=293 Identities=12% Similarity=0.068 Sum_probs=183.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh----ccchhHHH-HHHHHHHHHHHHHHhccc------hhHHHHHHhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS----AGRKGALI-IGGIIYLIGVSLHALAVN------MGMLFLGRVFT 142 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 142 (435)
+|+++.++|.+..+..+..++..|+.|.++|| +||||..+ .+.+..+++.++....++ +..+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 49999999999999999999999999999998 88855544 576777777666555543 34556666666
Q ss_pred hccccccccccchhhhccc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHhhhHHHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMA-PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~~~~~~~~~~~~~~ 217 (435)
+.+......+..++..|+. ++++|++..++......+|..+++.+...+....+ ..+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7666677777788999988 45779988888888888888887766555443322 247888888777766665444
Q ss_pred -hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHH
Q 043264 218 -AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQA 296 (435)
Q Consensus 218 -~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
.+..+|.++. + ++++.+..+..+++++++..+.......+....
T Consensus 200 ~~~~~~e~~~~----~------------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~- 244 (444)
T PRK09669 200 CFFMTKERYTP----E------------------------------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTA- 244 (444)
T ss_pred HhCCeEEecCC----C------------------------------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHH-
Confidence 3334543210 0 000000122344555555444433222222111
Q ss_pred hhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 043264 297 LTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRS 376 (435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 376 (435)
........+++.+..--+++..........+..+++.++.+++.||+|+|+.+..+....+++...+.+.
T Consensus 245 ---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~------- 314 (444)
T PRK09669 245 ---VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI------- 314 (444)
T ss_pred ---HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-------
Confidence 1222223333333211122233445555667788888899999999999999887766555433333222
Q ss_pred CCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCC
Q 043264 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILP 418 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 418 (435)
+.++.+...+..++.+++.+.. .++.+++.+|..+
T Consensus 315 ------~~~~~~~~~~~~~i~g~~~~~~-~~~~~am~ad~~d 349 (444)
T PRK09669 315 ------PPSNVWLIFALNILFNFIQNLT-TPLQWSMFSDVVD 349 (444)
T ss_pred ------CcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhh
Confidence 2344555566666677776655 4566788888876
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-19 Score=146.02 Aligned_cols=315 Identities=15% Similarity=0.107 Sum_probs=200.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHhhhhcccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHAL---AVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~ 149 (435)
.+++.++..++.+.|..-..+-++++|++.|| +|.|..-++-++...+|-++++. .+.+|++.++||+.|+|.-..
T Consensus 74 ~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESl 153 (459)
T KOG4686|consen 74 SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESL 153 (459)
T ss_pred cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhh
Confidence 47888999999999999999999999999995 78887777777777777777664 488999999999999998888
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCC----CcchHHHHhhhHHHHHHHHHhccCCCCh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNF----KRWRIAVSVSGFPATLMTIIAFFIPDTP 225 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~----~~wr~~~~~~~~~~~~~~~~~~~~pesp 225 (435)
..+-..++.-|+..|+.+.++|+.....-+|..+-..+.+++.+..+. .+- ....+...+....... +-
T Consensus 154 AVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~gh-T~LG~~l~~~~~tc~~------sl 226 (459)
T KOG4686|consen 154 AVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGH-TLLGLWLCFEVKTCKQ------SL 226 (459)
T ss_pred hhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHH------HH
Confidence 888899999999999999999999998889887776666666554320 000 0111100000000000 00
Q ss_pred hhHHhcCCHHH-HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 226 SSLIQRGKVQQ-ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 226 ~~l~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
......+-.|+ |++.+.+- + ....+.....+. +....+.+....+. +.......-+.
T Consensus 227 ical~lg~~D~rAerilh~e------------------~-g~~Ge~pkLtdv--~~f~ppfw~~~iic-v~yyva~fPFi 284 (459)
T KOG4686|consen 227 ICALSLGLSDDRAERILHLE------------------E-GFLGEEPKLTDV--NTFYPPFWVLVIIC-VLYYVAWFPFI 284 (459)
T ss_pred HHHHHhhhhhhHHHHHHhhh------------------c-CcccCCcccccc--cccCccHHHHHHHH-HHHHHHHHHHh
Confidence 00001111111 11111000 0 000000011111 11122222222222 21111233445
Q ss_pred HHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHH-HHHHHHHHHHhhccCCCCccc
Q 043264 305 VVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFI-CQVILAILMASESRSHGTSIF 382 (435)
Q Consensus 305 ~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~ 382 (435)
...|.+++ ++|+|+..++.+.+.......+.+++.|.++||+|++...+.+..+..+ +...+.+
T Consensus 285 ~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------------- 350 (459)
T KOG4686|consen 285 TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-------------- 350 (459)
T ss_pred hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--------------
Confidence 55666664 5899999999999988889999999999999999999877665544333 3233332
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhcC
Q 043264 383 SKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISFA 435 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~l 435 (435)
+.+...+.+++.+..++....++ |..++.++|+++-|+++|.++.++++
T Consensus 351 ---t~lsPy~~m~~lGLsysllAcsl-WP~va~~vpE~qLGTaygf~qsIqNL 399 (459)
T KOG4686|consen 351 ---TFLSPYTSMTFLGLSYSLLACSL-WPCVASLVPEEQLGTAYGFIQSIQNL 399 (459)
T ss_pred ---hhccHHHHHHHHhhhHHHHHHHH-hhhhhhhCCHHHhcchHHHHHHHHhh
Confidence 22334556667777766654433 66778889999999999999988754
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=161.91 Aligned_cols=330 Identities=12% Similarity=-0.036 Sum_probs=205.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc-----chhHHHHHHHHHH-HHHHHHHhccchhHHH-HHHhhhhcccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG-----RKGALIIGGIIYL-IGVSLHALAVNMGMLF-LGRVFTGLGIG 147 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~~~l~-~~r~l~G~~~g 147 (435)
|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ +.....+..++..... +..++.+++.+
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a 135 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA 135 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999666 999999997 7777777776663 4433344445544444 48899999999
Q ss_pred ccccccchhhhcccCCCCcchhhhH---HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 148 FINQTAPIYLVEMAPTKWRGAIGTG---FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
...++..++..|..+ +++....+. .....++|.++++.+++.+.+.. +||..|++.++..++..+...++||+
T Consensus 136 ~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~---~~~~~f~~~a~l~ll~~~~~~~~~E~ 211 (468)
T TIGR00788 136 LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT---LTRILFLITAALLLLQLFVSNLSKER 211 (468)
T ss_pred HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998 555443333 33444589999999999998864 49999999887777775556778886
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
+.....+.+ ++.. .. ..... . ...+ ..++.....+..++++..++.+...++.+ ....+. ...
T Consensus 212 ~~~~~~~~~-~~~~---~~--------~~~~~-~-~~~~-~~~~~~~~l~~~l~~~~i~~~l~fifl~~-~~~~~~-~~~ 274 (468)
T TIGR00788 212 RAFVRPRIG-TYLE---MN--------MALLT-L-GVLA-NVKVQILGLRGAIQLLEIAKPLIFIFLSY-ANLPGA-SGS 274 (468)
T ss_pred ccccccccc-ccch---hh--------hhhhh-h-hHHH-HHHHHHHHHHHHHhcHHHHHHHHHHHHHH-hhcCCC-Cce
Confidence 310000000 0000 00 00000 0 0000 00000111222233322222122122201 111111 111
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 305 VVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 305 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.+. ...+..|+++.+.|....+.+++.+++....+++.+|++.|+.+.++.++.+++............... ..
T Consensus 275 ~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-----gi 348 (468)
T TIGR00788 275 VFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-----GI 348 (468)
T ss_pred eEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc-----CC
Confidence 111 111458999999999999999999999999999999999999998888877776644321110000000 00
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.+.+.......+.+++.+..+.|. ..++.+..|++.+++.+++.+++.
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~ 396 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASIL 396 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHH
Confidence 223344455566677777777777 477789999999999999988765
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=159.93 Aligned_cols=301 Identities=13% Similarity=0.037 Sum_probs=182.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhh----hccch-hHHHHHHHHHHHHHHHHHhccc------hhHHHHHHhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTT----SAGRK-GALIIGGIIYLIGVSLHALAVN------MGMLFLGRVFT 142 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 142 (435)
+|+++.++|.+..+.-+..++..|+.|.++| |+||| +.++.+.+..+++..+....++ +..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999 67995 4555577777777666544332 33455666777
Q ss_pred hccccccccccchhhhccc-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHhhhHHHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMA-PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~~~~~~~~~~~~~~ 217 (435)
+++.....++..++..|.. ++++|.+..++...+.++|..+.+.+...+.+..+ ..+|+....+.++..++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999998 58889999888777777776666555443322211 135777766666665554443
Q ss_pred -hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHH
Q 043264 218 -AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQA 296 (435)
Q Consensus 218 -~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
.+..+|.+.. ++ .+.+++++.+.++.++...+++.+.......+..
T Consensus 197 ~~~~~~e~~~~----~~-----------------------------~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~ 243 (473)
T PRK10429 197 TLRNVHEVYSS----DN-----------------------------QVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAY 243 (473)
T ss_pred HHcCceecCCc----cc-----------------------------cccccccCCCHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3346664310 00 0000001223333332111111122222222222
Q ss_pred hhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 043264 297 LTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRS 376 (435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 376 (435)
.........+.+++.+....+....+.......++.+++.++.+++.||+|+|+.+..+..+.+++.+.+......
T Consensus 244 ~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~---- 319 (473)
T PRK10429 244 NIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA---- 319 (473)
T ss_pred HHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 2223344444454444333244445566666778889999999999999999999887777656555444322110
Q ss_pred CCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCC
Q 043264 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILP 418 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 418 (435)
...+.+..++...+.+.+.+... +..+++.+|..+
T Consensus 320 ------~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id 354 (473)
T PRK10429 320 ------APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVD 354 (473)
T ss_pred ------CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 22334445555555666665554 344667788865
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=157.04 Aligned_cols=170 Identities=14% Similarity=0.103 Sum_probs=132.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHH---HHhccchhHHHHHHhhhhcccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSL---HALAVNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...+++++++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888889999999999999999999999988877654443332 22345677788899999887777777
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhc
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQR 231 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~ 231 (435)
....++.|.+|++.|+.+.++......++..++|.+.+.+.+..+ +|+..+++..+++++..+..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~--~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ--NLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 778888999999999999997444344556678888887766432 477777666667777666667789999998865
Q ss_pred -----CCHHHHHHHHHHHhC
Q 043264 232 -----GKVQQALKSLNQVRG 246 (435)
Q Consensus 232 -----~~~~~a~~~~~~~~~ 246 (435)
+|.|||++.+++++.
T Consensus 440 ~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccccchhhHHHHhhcccc
Confidence 999999999999873
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=151.13 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=177.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhc----cchhHH-HHHHHHHHHHHHHHHhcc-----c--hhHHHHHHhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA----GRKGAL-IIGGIIYLIGVSLHALAV-----N--MGMLFLGRVF 141 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-----~--~~~l~~~r~l 141 (435)
+|+++.++|.+.+...+..++..++.|+++||. ||||.+ ..+.+...+.+++....+ + ...++...++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 489999999999999999999999999999986 777765 455555554444432111 1 2234445567
Q ss_pred hhccccccccccchhhhcccCC-CCcchhhhHHHHHHH-----HHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHH
Q 043264 142 TGLGIGFINQTAPIYLVEMAPT-KWRGAIGTGFQIFFW-----SGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMT 215 (435)
Q Consensus 142 ~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~-----~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~ 215 (435)
.+++.+...++..++..|...+ ++|.+..+.-..+.+ ++..++|.++........ .+|.....+.+++.++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHHHHHH
Confidence 7888888888777877777644 668877666554433 445555655543211100 112222222223323222
Q ss_pred HH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHH
Q 043264 216 II-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTF 294 (435)
Q Consensus 216 ~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (435)
+. ....||+++. + +++...+..++.+++++..........+.
T Consensus 198 ~~~~~~~~e~~~~----~-------------------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~-- 240 (448)
T PRK09848 198 FICFKSTRENVVR----I-------------------------------VAQPSLKISLQTLKRNRPLFMLCIGALCV-- 240 (448)
T ss_pred HHHHcCcEeccCC----C-------------------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHH--
Confidence 22 2335554310 0 00000022344555554433322222222
Q ss_pred HHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhh
Q 043264 295 QALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373 (435)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 373 (435)
...........|+++++ .|.++...+.......++.+++.++.+++.||+++|+.+.++..+.+++.+.+.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---- 314 (448)
T PRK09848 241 --LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---- 314 (448)
T ss_pred --HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----
Confidence 22233444556666543 56655544444444466778889999999999999999999888777776655432
Q ss_pred ccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChh-------hhhhhhHHHHhhh
Q 043264 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIE-------VRSAGQGLSTAIS 433 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~ 433 (435)
+..+.+.......+.+.+.+.... ..+++..|..|.+ .+|...|+.+...
T Consensus 315 ---------~~~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~ 371 (448)
T PRK09848 315 ---------SVWSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR 371 (448)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence 223445555555666666666543 4456667877654 3477777766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-16 Score=146.38 Aligned_cols=248 Identities=10% Similarity=-0.020 Sum_probs=158.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh----ccchhHHHH-HHHHHHHHHHHHHhccc------hhHHHHHHhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS----AGRKGALII-GGIIYLIGVSLHALAVN------MGMLFLGRVFT 142 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~-~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 142 (435)
+|+++..+|.+..+.-+.-++..|+.|.++|| +||||..++ +.+..+++.+++...++ ...+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 59999999999999999999999999999995 798766664 66777777766655543 34456666677
Q ss_pred hccccccccccchhhhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHhhhHHHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMAP-TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.++......+-.++..|..+ +++|.+..++...+..+|..+++.+...+....+ ..+|+....+.++++++....
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999986 6889999999999999988888777665554332 135777776666665555443
Q ss_pred h-ccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHH
Q 043264 218 A-FFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQA 296 (435)
Q Consensus 218 ~-~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
. ...+|.++- + +++..-++.++..++++..+.......+....
T Consensus 200 ~~~~~kE~~~~-----~------------------------------~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~- 243 (460)
T PRK11462 200 CFFTTKERVEA-----P------------------------------PTTTSMREDLRDIWQNDQWRIVGLLTIFNILA- 243 (460)
T ss_pred HHhcceeccCC-----C------------------------------ccCCCHHHHHHHHhCChHHHHHHHHHHHHHHH-
Confidence 3 334543210 0 00000012233444444333322222222221
Q ss_pred hhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHH
Q 043264 297 LTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFI 361 (435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i 361 (435)
.........++.+. .| ++...+.......++.+++.++++++.||+++|+....+.....+
T Consensus 244 ---~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 244 ---VCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred ---HHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 12222222222222 23 223344566677888899999999999999999887655444433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-16 Score=137.88 Aligned_cols=351 Identities=13% Similarity=0.067 Sum_probs=222.7
Q ss_pred CcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHH
Q 043264 17 RLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSA 96 (435)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~ 96 (435)
|...++|.+.+++++-.+..++..--++++ ..+.+.| ++ +....-|+.-+|++.+....
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~-----------------Yg-s~~~~~wlsmIym~v~vp~g 96 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSF-----------------YG-SSSAADWLSMIYMVVSVPFG 96 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHH-----------------hc-chHHHHHHHHHHHHHHHHHh
Confidence 455677888888776666665544333322 2344444 36 67778899999999999999
Q ss_pred HhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc------cchh--HHHHHHhhhhccccccccccchhhhcccCCCCcch
Q 043264 97 LMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA------VNMG--MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGA 168 (435)
Q Consensus 97 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (435)
+++-|+.|++|-|...+++..+.++|..+-..+ +.++ ....+..+.+.+.-.....-..+..-|+++++|..
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~ 176 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI 176 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence 999999999999999999999999999987776 2344 66688888888887777777788889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcC---CCCcchH--HHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHH
Q 043264 169 IGTGFQIFFWSGVAGASWINYFIMSSL---NFKRWRI--AVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLN 242 (435)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~l~~~l~~~~---~~~~wr~--~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~ 242 (435)
+..+-..+..+|.+++.++...+.... ++..|-. +|+....++.+.+++ .+..+|.|+.-.
T Consensus 177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp------------- 243 (480)
T KOG2563|consen 177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP------------- 243 (480)
T ss_pred hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------
Confidence 999999999999999998888887665 2345655 344444433333333 233344332000
Q ss_pred HHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchH
Q 043264 243 QVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVF 322 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 322 (435)
+... . .+.+.+-..+.+..++++.. +...+.+......++.....+...+...|++...+|
T Consensus 244 -------s~s~--~------~~~~~~f~~si~~~~~n~~F----~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG 304 (480)
T KOG2563|consen 244 -------SASQ--A------ALQDASFPKSIKSCFKNRQF----IILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG 304 (480)
T ss_pred -------chhH--h------hhhcCcHHHHHHHHHcCccH----HHHHHHHhhhHHHHHHHHHHhhhccccccCCccccc
Confidence 0000 0 00001113344555554433 333333333333344444444434445688878899
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcchH-HHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHh
Q 043264 323 PILIIQSTIFFVCLLLTGYLIDRVGRRI-MLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGM 401 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (435)
.......+++++++++.|.+.||.++-+ ...+......++...+..+.. .....+.......+++.+
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~-----------~~~~~viv~~t~~~~g~~- 372 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL-----------FLGDSVIVFTTCGLLGFF- 372 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----------cCCceEehhhhHHHHHHh-
Confidence 9999999999999999999999987644 444444444444222221111 223333444444444444
Q ss_pred hhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 402 ALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 402 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+.+..|+..-+..|..=|..-++..|+.+..
T Consensus 373 ~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 373 GTGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred hcCCCCcceeeeeeeccccCCcccceeEEee
Confidence 3455677777777775455555555555444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=140.56 Aligned_cols=294 Identities=15% Similarity=0.225 Sum_probs=209.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhh----hccchhHHHH-HHHHHHHHHHHHHhccc------hhHHHHHHhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTT----SAGRKGALII-GGIIYLIGVSLHALAVN------MGMLFLGRVFT 142 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~------~~~l~~~r~l~ 142 (435)
+|+++..+|.+..+.=+--++..|+.|.++| |+||+|..++ +.+..++.+.++-.+++ ....++...+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 5999999999999999999999999999999 5888666554 77999999998888874 34556777888
Q ss_pred hccccccccccchhhhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHhhhHHHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMAP-TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~~~~~~~~~~~~~~ 217 (435)
+++......+-.++..|..+ +++|.+..+.-+.+.++|.++...+...+....+ ..||+....+.+++.++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999984 6789999999999999998777766666655543 247888777777776666555
Q ss_pred hcc-CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHh----hhhccCchhHHHHHHHHH
Q 043264 218 AFF-IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYK----MLLERKYRPHLLFAIALP 292 (435)
Q Consensus 218 ~~~-~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 292 (435)
.++ .+|.+. + ....++..+.+++ .+++++...... +.
T Consensus 203 ~~~~v~ER~~---------~-------------------------~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l----~~ 244 (467)
T COG2211 203 CFFNVKERVV---------E-------------------------TQPTKTGVKLKLKDSFLLIFKNRPLLLLL----LM 244 (467)
T ss_pred HHHHhhcccC---------c-------------------------cccCcccccccHHHHHHHHHccchHHHHH----HH
Confidence 333 555432 0 0000000122333 344444333322 22
Q ss_pred HHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHH
Q 043264 293 TFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371 (435)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 371 (435)
..+.+.+.+.......++.+ .+|.+.............+.+++.++..++.+|+|+|++...+.++.+++.+++.+.
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~-- 322 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-- 322 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--
Confidence 33333334444444444443 256666667777778888888889999999999999999999999999988888775
Q ss_pred hhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCCh
Q 043264 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPI 419 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 419 (435)
+.++.+..++..++.+++.+.. .+++|++.+|...-
T Consensus 323 -----------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDy 358 (467)
T COG2211 323 -----------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDY 358 (467)
T ss_pred -----------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhH
Confidence 4456666666667777777666 67889999887643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-14 Score=135.32 Aligned_cols=319 Identities=17% Similarity=0.148 Sum_probs=208.6
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHH-HHHHHHHHHHHHHhc--cchhHHHHHHhhhhccccccccccch
Q 043264 79 WKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALII-GGIIYLIGVSLHALA--VNMGMLFLGRVFTGLGIGFINQTAPI 155 (435)
Q Consensus 79 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~ 155 (435)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+.+.+..+. ++++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999987766665 555555666666664 34444455556666778888888899
Q ss_pred hhhcccCCCCc--------------------------chhhhHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcchHHH
Q 043264 156 YLVEMAPTKWR--------------------------GAIGTGFQIFFWSGVAGASWINYFIMSSLN-----FKRWRIAV 204 (435)
Q Consensus 156 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----~~~wr~~~ 204 (435)
++.|..+++++ ++..+.-.....+|.++.-.+...+....+ ..+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 899888888888888887777666544332 12457788
Q ss_pred HhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchh
Q 043264 205 SVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRP 283 (435)
Q Consensus 205 ~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (435)
.+.++.-++..+. .+++||.|+....++...-. ....++. ...+++..+ .
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~l-----------~~t~k~~~~----~ 280 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYL--------------RFGFKRL-----------WRTFKEIRK----L 280 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHH--------------HHHHHHH-----------HHHHHHHHh----C
Confidence 7777765554444 56688876410000000000 0000111 122223222 2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch--HHHHHhHHHHH
Q 043264 284 HLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR--IMLIVGGCQIF 360 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~ 360 (435)
+.+...++.++...-+...+......+.+ ++|++..+.........+..++|+++.+++.||+|.| +.+..+.....
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 22333444444444456666677777765 6999999999999999999999999999999999998 77666655553
Q ss_pred HHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 361 ICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 361 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+..+.-.+-.... . ....+.+...+..++.+.+.+.. .+...++.+|+.|+++.+...|+....+.
T Consensus 361 ~i~~~g~~G~~~~--~-----~g~~~~~~f~~~a~~~G~~~G~~-qs~sRs~~~~LiP~g~e~efFgly~i~gk 426 (477)
T PF11700_consen 361 IIPLYGLFGFWPS--F-----FGLKSPWEFWVLAVLIGLFMGGI-QSASRSLFSRLIPPGREAEFFGLYAITGK 426 (477)
T ss_pred HHHHHHHHHhhhc--c-----cCcccHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3322221100000 0 01245555666666777776655 44556788999999999999999887653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=134.02 Aligned_cols=248 Identities=13% Similarity=0.066 Sum_probs=166.9
Q ss_pred HhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----------
Q 043264 127 ALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN---------- 196 (435)
Q Consensus 127 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~---------- 196 (435)
+..++++.++++-++.|.|.+...+..+.++++..++|++.+.+++.+...++|..++|.+++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3557899999999999999999999999999999999999999999999999999999999998874321
Q ss_pred ---CCcchHHHHhhhHHHHHHHHHhcc--CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccc
Q 043264 197 ---FKRWRIAVSVSGFPATLMTIIAFF--IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASET 271 (435)
Q Consensus 197 ---~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (435)
...|+++|++.+...++..+.+.+ +||... ++++ + . .+++ ..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--------------------~---~-~~~~---~~ 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--------------------R---V-SSGD---TT 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--------------------c---c-cccc---cc
Confidence 136999998666554444444333 455321 0000 0 0 0000 00
Q ss_pred cHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH---cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcc
Q 043264 272 PYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS---LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGR 348 (435)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 348 (435)
..+..++ ++......+..+...........|.+.|+++ .|+++.+.+...+....+.++|+++.+++.||+++
T Consensus 132 ~~~~~~~----~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQ----FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 0111222 1222233344444444466778888888864 48899999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 349 RIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
|+.+.++..+.+++.++.... +. ........+.+++.+..++.. .....+.+|++ .+++.++
T Consensus 208 ~~~l~~~~~l~~~~~~l~~~~---------------~~-~~~~~~~~l~g~~~s~i~P~~-~s~a~~~~~~~-~~~asai 269 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSIGAALT---------------HG-YVAMWFVLALGLFNSIMFPTI-FSLALNALGRH-TSQGSGI 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---------------CC-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhh-hhhhHHH
Confidence 998887776666655333321 11 222334556677766665543 45556777753 4455554
Q ss_pred H
Q 043264 429 S 429 (435)
Q Consensus 429 ~ 429 (435)
.
T Consensus 270 ~ 270 (310)
T TIGR01272 270 L 270 (310)
T ss_pred H
Confidence 3
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=137.38 Aligned_cols=301 Identities=12% Similarity=0.097 Sum_probs=181.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHH--HHHH-HHHHhc----cch-hHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIY--LIGV-SLHALA----VNM-GMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~-~~~~~~----~~~-~~l~~~r~l~G~~~ 146 (435)
|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++...... ..+. ....+. .|. ...+++-...|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999777655433222 2222 222222 232 23344445556656
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc-CCCCh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF-IPDTP 225 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp 225 (435)
....++..+++.+.. ++.+.-.|-.-...++|.+++..++|.+.+. +-+..|++....+++..++... -|+.+
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 666666666655543 3345556667788889999999999988763 2345677766665555444333 33333
Q ss_pred hhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhh---hhccCchhHHHHHHHHHHHHHhhchhH
Q 043264 226 SSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKM---LLERKYRPHLLFAIALPTFQALTGFNL 302 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (435)
+....++ .+..++++.+.++ ++|.+..+. .... .......+..
T Consensus 193 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~l~k~~~fw~---~~l~-v~g~~~~Y~v 238 (412)
T PF01306_consen 193 PQAEVAD------------------------------ALGAKKDKVSLKDVLSLFKMRNFWF---FVLF-VIGVAAIYDV 238 (412)
T ss_dssp SSS-SST------------------------------TSSS------HHHHHHHTTSHHHHH---HHHH-HHHHHHHHHH
T ss_pred hhhhhhc------------------------------ccccCCCCCcHHHHHHHhcchhHHH---HHHH-HHHHHHHHHH
Confidence 2000000 0000111223333 333332222 1111 1111112344
Q ss_pred HHHHHHHHHHH----cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 303 NAVVGQLIVTS----LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 303 ~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
.-...+.+... .+.+....|...+...+.+.+...+..++.+|+|.|+.++++..++.+-....++.
T Consensus 239 fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--------- 309 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--------- 309 (412)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---------
Confidence 43344444443 23344557888899999999999999999999999999999999988887777654
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
++.+.+...-.+.+.-+.....+. .-|+.+.+|++..++.+.+...
T Consensus 310 ------~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~ 355 (412)
T PF01306_consen 310 ------TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQ 355 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHT
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHH
Confidence 566677777788887777765555 4678999999999988877643
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=126.86 Aligned_cols=309 Identities=15% Similarity=0.170 Sum_probs=201.6
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc-----chhHHHH-HHHHHHHHHHHHHhc-----c-------ch--h
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG-----RKGALII-GGIIYLIGVSLHALA-----V-------NM--G 133 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-------~~--~ 133 (435)
+++.....+.+.++.++... ..+.+|+.+|+.+ ||..++. |..+...+..+..++ . +. +
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 47888888888888877765 5899999999999 8877766 666666665555543 2 22 2
Q ss_pred --HHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHH
Q 043264 134 --MLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPA 211 (435)
Q Consensus 134 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~ 211 (435)
...+.-.+.|+|.+...++..++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.+++..-...+...++..
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 334556789999999999999999999999999999999999999999999999998877654222222222222333
Q ss_pred HHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHH
Q 043264 212 TLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIAL 291 (435)
Q Consensus 212 ~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (435)
+...+...+=.|.+..... +..++++..-++.++++..++..++.+....+
T Consensus 169 ~~l~~ia~wg~E~r~~~~~-----------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l 219 (403)
T PF03209_consen 169 LLLNLIALWGQEPRRSRRA-----------------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFL 219 (403)
T ss_pred HHHHHHHHHhcccCCcccc-----------------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence 3322333332332210000 00001111112344555555555554444333
Q ss_pred HHHHHhhchhHHHHHHHHH-HHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHh-hhcchHHHHHhHHHHHHHHHHHHHH
Q 043264 292 PTFQALTGFNLNAVVGQLI-VTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLID-RVGRRIMLIVGGCQIFICQVILAIL 369 (435)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~i~~~~~~~~ 369 (435)
..+. ++..-..+..| -+.+|++..+...+....+.+.++|....+++.. |.++++....++....+++.++.+.
T Consensus 220 ~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 220 GTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3221 22222222222 2458999999999999999999999999997766 6788888888888888887776665
Q ss_pred HHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 370 MASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
. ...+.+......+++|++.+....... ....++.+++..|..+|.=
T Consensus 296 ~------------~~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~aG~~mG~W 342 (403)
T PF03209_consen 296 G------------PLGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRAGLFMGAW 342 (403)
T ss_pred H------------hcccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcchhHHHHHH
Confidence 3 334567777788888888776644333 3335777777777776653
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-15 Score=117.64 Aligned_cols=136 Identities=20% Similarity=0.319 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCC
Q 043264 85 NSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTK 164 (435)
Q Consensus 85 ~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 164 (435)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|..|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc-cCCC
Q 043264 165 WRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF-FIPD 223 (435)
Q Consensus 165 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pe 223 (435)
+|++..++.+....+|..+++.+.+.+.+.. +|++.+.+.++..++..+... ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL---GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc---chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988753 599999888877666655543 3554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=122.68 Aligned_cols=311 Identities=16% Similarity=0.129 Sum_probs=204.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH-HHHHHHHHHHHHHHhccc--h-hHHHHHHhhhhccccccccc
Q 043264 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI-IGGIIYLIGVSLHALAVN--M-GMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~ 152 (435)
+.+..+...++..+..++-+|+.|.++|+.|+||... +...+..+...+..+.++ + +..++.-.+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3466788888999999999999999999999766555 466666666666666654 4 44456677888888899999
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC---------------CCCcchHHHHhhhHHHHHHHHH
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL---------------NFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---------------~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
-.+++.+..++++-++..++-.....+|..+.-+......... +...-|..+.+.++--++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 9999999999988888877766656666555544432111111 1245778888877776665544
Q ss_pred -hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHH
Q 043264 218 -AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQA 296 (435)
Q Consensus 218 -~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (435)
.+..||.++ .+....++ .....+++ +.++++.++++... ...+..+..
T Consensus 216 m~~~v~~~~~---~~~~~~~~-------------l~~g~k~L-----------~~t~k~i~~~~~i~----~FLiA~~~~ 264 (438)
T COG2270 216 MILNVHDAEK---ISSPPPTA-------------LRNGFKEL-----------KSTFKEIRGRKNLV----LFLIARFFY 264 (438)
T ss_pred HHhccccccc---ccccchHH-------------HHHHHHHH-----------HHHHHHHhcccchH----HHHHHHHHH
Confidence 445666553 00000000 00011111 33444544443222 223333333
Q ss_pred hhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 043264 297 LTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375 (435)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 375 (435)
.-+.+........+-. ++|++..+.........+..++|+++.|++.||+|.|+++..+.++..+.++...+..
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~----- 339 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE----- 339 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----
Confidence 3345666667666665 7999999999999999999999999999999999999988888877776665554431
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
. .....++..+.+...+.. .+..-++..+++|+++-++..|+.+..++
T Consensus 340 -------~---~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fFglyaltgr 387 (438)
T COG2270 340 -------G---ELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFFGLYALTGR 387 (438)
T ss_pred -------c---cHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCccccceeehhhhhhh
Confidence 1 222333334444444444 33446788999999999999999988764
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=118.08 Aligned_cols=345 Identities=13% Similarity=0.081 Sum_probs=210.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhcc--chhHHHHHHhhhhccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 150 (435)
+|+++++..-+.+.|..-.-....++|+++|| +|+|+++..|.++..+|-++.+.+. +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 58999999999999988888999999999998 5999999999999999999999884 78899999999999999999
Q ss_pred cccchhhhcccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhH
Q 043264 151 QTAPIYLVEMAPTKW--RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL 228 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l 228 (435)
+....++.|.+|+++ |-...+++.++.++|.+++|++.+++.+..+ |...|...++-..+.++.....+..-.+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 999999999998644 5668889999999999999999999999655 99999988877666665544333111000
Q ss_pred Hhc-----CCHHHHHHHHH----HHhCC---CcCcHHHHHHHHHHH---------HHhhhhccccHhhhhccCchhHHHH
Q 043264 229 IQR-----GKVQQALKSLN----QVRGT---KFDSENELKYLIKYN---------EDMRIASETPYKMLLERKYRPHLLF 287 (435)
Q Consensus 229 ~~~-----~~~~~a~~~~~----~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (435)
..+ .+..+...... ..... .....++........ .+....++.. .+..|-...-+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl 291 (498)
T COG3104 213 GGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFL 291 (498)
T ss_pred CCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHH
Confidence 000 00011110000 00000 000000000000000 0000000000 00000001111122
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHH--cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch-------HHHHHhHHH
Q 043264 288 AIALPTFQALTGFNLNAVVGQLIVTS--LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR-------IMLIVGGCQ 358 (435)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~ 358 (435)
...+.+...-...+..+.|.....++ .|++ -...+..+...+.-++..++..++..+++++ .-+-++..+
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l 370 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLIL 370 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHH
Confidence 22222232222334455555444322 2322 2345677777888888888777777775443 133455566
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 359 IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 359 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
++.+.+++........+.+ ...+.++.+...++..++ ....+|+...++..+.|++..+..++.-
T Consensus 371 ~g~~fl~l~~~~~~~~~~~-----~~~s~~~lil~y~l~s~g-EL~iSpvGLs~~t~laP~~~~s~~ma~w 435 (498)
T COG3104 371 AGLGFLILLLAGIWFGGPS-----GLVSVWWLVLSYVLQSFG-ELFISPVGLSMVTKLAPPALKSFIMAMW 435 (498)
T ss_pred HHHHHHHHHHHHHhhcCCC-----CCcCHHHHHHHHHHHHHH-HHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence 6666555554422111111 224455555555555555 5666888888899999999988888754
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=116.81 Aligned_cols=342 Identities=14% Similarity=0.057 Sum_probs=215.6
Q ss_pred cccccchhh-HHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLT-AYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 377777764 455566667778889999999999999999999999999999999999999999999999998764 777
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcC
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRG 232 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~ 232 (435)
-.+++-...|+++-.++.+....+..+|..++.+++..+....+ .+.+....+......+..+..+++|.+++-..-++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 78888888888888899999999999999999999998887543 45667767766666666666778888765433322
Q ss_pred CHHHHHHHHHHHhCCCcCcHHHHH-HHHHHHHHhhhhccccHhhhh---ccCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 233 KVQQALKSLNQVRGTKFDSENELK-YLIKYNEDMRIASETPYKMLL---ERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
+.++..+ .++...++.+..++.+ +.++..+..+...+..++.++ +.....+.++...+.+....+++.....|..
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ 271 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQ 271 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2211111 0000000000000000 000000000000111122222 2223334455555666666666777888888
Q ss_pred HHHHHc---CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccch
Q 043264 309 LIVTSL---GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKR 385 (435)
Q Consensus 309 ~~~~~~---g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
.+-++. +-...-.|..-....+.+.++.+..|++..+..+..-+.++......+.+++... ...
T Consensus 272 ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-------------~t~ 338 (412)
T PF01770_consen 272 SLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-------------FTG 338 (412)
T ss_pred HHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-------------Hhh
Confidence 877766 2233345677777778888888888888666665544444433333232222222 236
Q ss_pred hhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 386 SAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+.|...+..+++...+..... +...-++.....+.-|...|+++.+
T Consensus 339 ~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 339 NIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHH
Confidence 777777777777777766533 3233334444556666667766554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-13 Score=121.77 Aligned_cols=190 Identities=16% Similarity=0.152 Sum_probs=143.9
Q ss_pred CCCcchhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHH
Q 043264 15 KGRLTGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIF 94 (435)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i 94 (435)
.++.+|+...++.+. +++.+.+.+++.+. ..++.++..| +-+.+..|++.++..++.++
T Consensus 28 ~~~t~wrsi~l~~~~---sfl~~v~~sI~~~s--~wpYl~~lD~----------------~A~~~ffG~viaa~slg~~i 86 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLN---SFLVAVQFSIYLTS--MWPYLQKLDP----------------TATATFFGLVIAASSLGHAI 86 (488)
T ss_pred ccCCchHhHHHHHHH---HHHHhhhheEEEee--cchhhhhcCC----------------CCCcchhhHHHHHHHHHHHh
Confidence 345566655554444 47777788877643 3566665422 56788899999999999999
Q ss_pred HHHhHHHhhhhccc-hhHHHHHHHHHHHHHHHH-Hhc---c-chhHHHHHHhhhhccccccccccchhhhcccCCCCcch
Q 043264 95 SALMAGRLTTSAGR-KGALIIGGIIYLIGVSLH-ALA---V-NMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGA 168 (435)
Q Consensus 95 ~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 168 (435)
+++..|....|.|. |+.++.+.++..++.++. +.. + .-+.++++|++.|+|.| .....-+|+++....++|.+
T Consensus 87 ~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 87 FSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPR 165 (488)
T ss_pred cchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHH
Confidence 99999999999987 999999999999999988 333 3 56888999999999965 56677899999888899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCC-------C---cchHHHHhhhHHHHHHHHHh-ccCCCChh
Q 043264 169 IGTGFQIFFWSGVAGASWINYFIMSSLNF-------K---RWRIAVSVSGFPATLMTIIA-FFIPDTPS 226 (435)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~-------~---~wr~~~~~~~~~~~~~~~~~-~~~pesp~ 226 (435)
+++....+..+|.++||.+...+.....+ . -+..+-++.++..++..+.. .+++|.++
T Consensus 166 A~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 166 AFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 99999999999999999988777654310 1 12345566666666655553 45777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=136.12 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcc
Q 043264 81 LTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEM 160 (435)
Q Consensus 81 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (435)
......+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++..+...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999999888888999999998888999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCCh
Q 043264 161 APTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTP 225 (435)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp 225 (435)
+|.+.|++++++......+|.+++|.+++.+.+. +...+|++.++..++..++..++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999887663 245677777777777766667789875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-12 Score=110.53 Aligned_cols=253 Identities=12% Similarity=0.091 Sum_probs=159.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.+..|++.+....+...++..++.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++.|++....+.+-.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE 143 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE 143 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999886 45668999999999999999999999888
Q ss_pred hhh-hcccC----CCCcchhhhHHH-HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc-cCCCChhh
Q 043264 155 IYL-VEMAP----TKWRGAIGTGFQ-IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF-FIPDTPSS 227 (435)
Q Consensus 155 ~~i-~~~~~----~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~ 227 (435)
++. .|.-. ++..+...+... ...++-.+.+.+++..+.+..+ .+-..+|....+..++..+.+. ..+|++.
T Consensus 144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg- 221 (354)
T PF05631_consen 144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYG- 221 (354)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence 875 45432 222222222222 2233334555566666666444 3346788777777666665543 3556532
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
+.++ ..+..+.. ++.++.+.+ .++.+...........+.+.....|.
T Consensus 222 -----~~~~--------------~~~~~~~~-----------~~a~~~i~~---d~ril~LG~~qslFE~smy~FVflWt 268 (354)
T PF05631_consen 222 -----DTSS--------------SSSLSGSF-----------REAWRAILS---DPRILLLGLIQSLFEGSMYLFVFLWT 268 (354)
T ss_pred -----Cccc--------------ccchHHHH-----------HHHHHHHHc---CchhHHHHHHHHHHHHHHHHheeeee
Confidence 0000 00000000 112222322 23445555555666555555666677
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHh-hhcchHHHHHhHHHHHHHHHH
Q 043264 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLID-RVGRRIMLIVGGCQIFICQVI 365 (435)
Q Consensus 308 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~i~~~~ 365 (435)
|.+- ..+ ...--|++.+...++.++|+.+..++.. +......+.....+.++++.+
T Consensus 269 PaL~-~~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~ 325 (354)
T PF05631_consen 269 PALD-PDD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAI 325 (354)
T ss_pred ceec-CCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 8764 111 1223588999999999999988876554 434334444444444444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-15 Score=143.10 Aligned_cols=285 Identities=15% Similarity=0.107 Sum_probs=3.0
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc--------------------
Q 043264 71 DGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV-------------------- 130 (435)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 130 (435)
++.++++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++-+
T Consensus 30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 455599999999999999999999999999999998888888899999999998876420
Q ss_pred ------------------------------chhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHH
Q 043264 131 ------------------------------NMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSG 180 (435)
Q Consensus 131 ------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 180 (435)
-+..++++.++.|+|....++...+|+-|.+++++-+..+|+......+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 03678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC---------------CC----cchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHH
Q 043264 181 VAGASWINYFIMSSLN---------------FK----RWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSL 241 (435)
Q Consensus 181 ~~~~~~l~~~l~~~~~---------------~~----~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~ 241 (435)
.++|.++++.+.+... +. .|..-|++.++..++..+..+.+|+.-+-. ++..++.+...
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~--~~~~~~~~~~~ 267 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT--SERQEEKESSE 267 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc--ccccchhhhhh
Confidence 9999999988765431 11 255556666666666666566666543211 00011100000
Q ss_pred HHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhh---ccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCC
Q 043264 242 NQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLL---ERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIR 317 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s 317 (435)
++. +++ ++.+..+++..+......+++. ++..+++.++...+...........+..+.|.|++ +++.+
T Consensus 268 ~~~-------~~~-~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s 339 (539)
T PF03137_consen 268 RKE-------EDS-DKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLS 339 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cch-------hhh-hhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 000 000 0000000000000012223332 34455565666666666666667788899999986 58999
Q ss_pred CCchHHHHHHHHH-HHHHHHhhhHHHHhhhc--chHHHHHhHHHHHHHHHH
Q 043264 318 LKDVFPILIIQST-IFFVCLLLTGYLIDRVG--RRIMLIVGGCQIFICQVI 365 (435)
Q Consensus 318 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~i~~~~ 365 (435)
+.++..+.....+ +..+|.+++|++.+|++ .|+.+....+...++.+.
T Consensus 340 as~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 340 ASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 8888877755444 77788899999999875 345555444444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=126.89 Aligned_cols=150 Identities=13% Similarity=0.191 Sum_probs=127.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc----chhHHHHHHhhhhcccccccc
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV----NMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 151 (435)
.+..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988877666642 245677889999999998889
Q ss_pred ccchhhhcccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHHhhcCCC---CcchHHHHhhhHHHHHHHHH-hccCCCCh
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQ-IFFWSGVAGASWINYFIMSSLNF---KRWRIAVSVSGFPATLMTII-AFFIPDTP 225 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~---~~wr~~~~~~~~~~~~~~~~-~~~~pesp 225 (435)
....++.|.+|+++|+++.++.+ ...++|..+||.+++.+.+..+. +||+.+|.+.+++.++..+. .+++||+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 98999999999999999999997 67889999999999999987653 57999998888777776555 45577764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=127.93 Aligned_cols=279 Identities=14% Similarity=0.090 Sum_probs=197.4
Q ss_pred CcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc-------------------c
Q 043264 71 DGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV-------------------N 131 (435)
Q Consensus 71 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------~ 131 (435)
++.++++.++.|++.+.+=++..+...+..+...|.-|-+.+-+|+++.+++++++++-+ +
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 455699999999999999999999999999999999999999999999999999987630 0
Q ss_pred --------------------------------h-hHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHH
Q 043264 132 --------------------------------M-GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFW 178 (435)
Q Consensus 132 --------------------------------~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (435)
. ..++.+.++.|+|....++...+|+-|...+++-+..+++......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 1 2567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCC----------------cchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHH
Q 043264 179 SGVAGASWINYFIMSSLNFK----------------RWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLN 242 (435)
Q Consensus 179 ~g~~~~~~l~~~l~~~~~~~----------------~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~ 242 (435)
+|.++|.++++++.....+. .|..-|++.+.+.++..+.++++|+..+- .++..+ .+
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~~----~~ 356 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK---SQKRKR----AR 356 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc---ccccch----hh
Confidence 99999999999987654221 36666777777777777777778765421 111000 00
Q ss_pred HHhCCCcCcHHHHHHHHHHHHHhhhhccccHhh---hhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCC
Q 043264 243 QVRGTKFDSENELKYLIKYNEDMRIASETPYKM---LLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRL 318 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~ 318 (435)
+.+..+.+.+ .+++........++ ..++...++.++...+...+....+.....|+|-|++ ++|.++
T Consensus 357 ~~~~~k~~~~---------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sa 427 (735)
T KOG3626|consen 357 DLHVLKTESG---------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISA 427 (735)
T ss_pred hhcccccccc---------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCH
Confidence 0000000000 00000000111222 2233344455666666666666678888899999996 589999
Q ss_pred CchHHHHHHHH-HHHHHHHhhhHHHHhhhc--chHHHHHhHHHHHHHHHH
Q 043264 319 KDVFPILIIQS-TIFFVCLLLTGYLIDRVG--RRIMLIVGGCQIFICQVI 365 (435)
Q Consensus 319 ~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~i~~~~ 365 (435)
..+..+....+ .+..+|.+++|++++|+. .|....+..+...++++.
T Consensus 428 s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 428 SLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 88888775444 466778888999999874 455555554444444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=120.56 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=121.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.|...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899988888888888999999999999999988877766666555555677888888899988888777777777
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
.+..|..|+ +|+++.++++....+|..+++.+++.+.+.. +|+..+.+.+++.++..+..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888998875 5999999999999999999999999998864 5999999888888777777666665
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-12 Score=119.79 Aligned_cols=300 Identities=15% Similarity=0.173 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhc--cccccccccchhhhcccCCC
Q 043264 87 SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGL--GIGFINQTAPIYLVEMAPTK 164 (435)
Q Consensus 87 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~i~~~~~~~ 164 (435)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. |++++ +.|+ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 34677788999999999999999999999999888888777776 34433 4443 23456777888999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHH
Q 043264 165 WRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQ 243 (435)
Q Consensus 165 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~ 243 (435)
+|....++.......+..++|.+++.+....+ .-..|.+..+..++..+. ..++||+-. ++.+.+ + ..+.
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~---~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~-~--~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG---IALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD-A--TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHhhccccccC---cccccc-c--cccc
Confidence 99999999999999999999999999988644 777888888777777666 456888742 111110 0 0000
Q ss_pred HhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH-HHcCCCCCchH
Q 043264 244 VRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIV-TSLGIRLKDVF 322 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~ 322 (435)
....+ .........++...+....+..+.......+..........-..++++ ...|++..+.+
T Consensus 216 ~~~~~---------------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s 280 (463)
T KOG2816|consen 216 LTPGS---------------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS 280 (463)
T ss_pred cCCCc---------------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH
Confidence 00000 000000111222222112222222222222211110000000112222 34789999999
Q ss_pred HHHHHHHHHHHHHHhhhH-HHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHh
Q 043264 323 PILIIQSTIFFVCLLLTG-YLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGM 401 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (435)
...+.......++.++.. .+...++.|+....|.....+....+++. +..|.......+..+.
T Consensus 281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---------------~~~w~~~~~~v~~~~~- 344 (463)
T KOG2816|consen 281 DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---------------TETWMMFAAGVVVALA- 344 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---------------ccchhhhHHHHHHHhh-
Confidence 888888888888888777 77788899998888888888888888775 3334433333333222
Q ss_pred hhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 402 ALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 402 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
....|...++.+...+++++|+++++.+.+
T Consensus 345 -~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 345 -GIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred -cchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 222344456777888999999999987764
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=126.15 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=125.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.+..+.+++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999989999999999999999999999888888888
Q ss_pred hhhhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCC
Q 043264 155 IYLVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDT 224 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pes 224 (435)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+.. ||+..|.+.+++.++..+.. ...++.
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999988887655 67778899999999999999865 49999998877766655443 334443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=115.85 Aligned_cols=143 Identities=23% Similarity=0.330 Sum_probs=132.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchh-HHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKG-ALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 678899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
..++.|..|+++|++..++.+....+|..+++.+.+.+.+. .+|+..+.+.+++.++..+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999875 45999999998888887766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=117.96 Aligned_cols=137 Identities=12% Similarity=-0.055 Sum_probs=119.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccch--hHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNM--GMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~ 152 (435)
+.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..++.++..+.++. ..+++..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 6778888999999999999999999999999999999999999998888887777643 33456678888888888888
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHH
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLM 214 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~ 214 (435)
...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. +|++.|.+.+++.++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---GFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999998764 5999998887766554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.2e-12 Score=118.15 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=121.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhc
Q 043264 80 KLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVE 159 (435)
Q Consensus 80 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 159 (435)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34666778888999999999999999999999999988888888888888888888899999999999888888888889
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 160 MAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 160 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
..|+++|+++.++++....+|..+++.+.+.+.+.. +|+..+.+.++..++..+...++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999888764 4999999888777776666555444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=117.64 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=122.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.+...+...++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78889999999999999999999999999999999999887777777777777778888888888889988888888889
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI 221 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 221 (435)
++..|.+|+++|+++.++.+....+|..++|.+++.+.+..+ +|...+.......++..+..+++
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987532 46666666665555555544443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=115.62 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcc
Q 043264 81 LTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEM 160 (435)
Q Consensus 81 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (435)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++.+.+.+..++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666777888899999999999999999999999999999888888888888888899999999998888888888999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 161 APTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
+|+++|+++.++.+....+|..++|.+.+.+.+.. +|+..|.+.++..++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865 499999998887777665543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=113.40 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=122.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+......+.++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899988888778888999999999999999999888777666666666677888888899999999888888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
.++.|..|+ +|+++.++.+....+|..++|.+++.+.+.. +|+..|.+.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHheecC
Confidence 889998875 5679999999999999999999999998864 4999999988887777766655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=113.36 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=123.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.++|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.++++|++.+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQ-IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.++.+. |+++|++..++++ ...++|..+++.++|.+.+..+ + ..|.+.+.++++..+.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---H-HHHHHHHHHHHHHHHH
Confidence 999998 8889999999976 5788999999999999998654 5 4566666666655444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=118.02 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=116.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc--cchhHHHH--HHHHHHHHHHHHHhccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA--GRKGALII--GGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+..+.+++.++..++..++.++.|.++||. ++|+...+ +.++.+++.++....++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 78899999999999999999999999999973 34443333 344445555666778899999999999999999999
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTI 216 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~ 216 (435)
+...+++.|.+|++++++..++++....+|.++||.+++.+.+..+ +|++.|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999887542 499999888877665544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.2e-11 Score=113.59 Aligned_cols=145 Identities=16% Similarity=0.040 Sum_probs=109.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHH--HHHhccchhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVS--LHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++.. .....++.+...+.+++.|++.......
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 88999999999999999999999999999999999887765544443332 2233456666778888888654333333
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhc---------CCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWS-GVAGASWINYFIMSS---------LNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~---------~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
......|.+|++.||.+.++.+....+ |..++|.+.+.+.+. ....+|+..|.+..+..++..+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 346677999999999999999888886 778999999999881 0124699999888776666655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-11 Score=110.20 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=115.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.++..+...++..+++++.|++.||+|+|+.+..+..+..++.+... + ........++.|++.+...|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 77888899999999999999999999999999999999888888777665443 2 23444567788887777889999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
+++.|..|+++++...+......++|..++|.+++.+.++.+ |++.|.+.+.+.++..+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g---~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS---DNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHh
Confidence 999999988888888888888899999999999999988654 999998888777666555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=119.08 Aligned_cols=133 Identities=16% Similarity=-0.041 Sum_probs=105.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--cchhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--VNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..++.... ++.+.+.+..++.+.......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 8899999999999999999999999999999999999988877766665544433 33344445555554443344566
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHH
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFP 210 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~ 210 (435)
.+.++.|.+|+++|++++++......+|..++|.+++.+.+.. +|+..+...+..
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~---g~~~~~~~~~~~ 441 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL---DLGTALASLSFS 441 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC---ChHHHHHHHHHH
Confidence 7788999999999999999999999999999999999998864 488776554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-11 Score=111.45 Aligned_cols=135 Identities=18% Similarity=0.090 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcc
Q 043264 81 LTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEM 160 (435)
Q Consensus 81 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (435)
.+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+...+.+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45667777888889999999999999999999999888888888888888888888999999999999999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 161 APTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
.|+++|++..++......+|..+||.+++.+.+.. +|+..|++.++..++..+..
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---GFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754 59999999888777766554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-11 Score=110.68 Aligned_cols=144 Identities=8% Similarity=-0.073 Sum_probs=120.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|++..+.+++.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+...+...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988877777777777778887777788889998888888888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCC
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIP 222 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~p 222 (435)
++..|..| +++++..+.......+|..++|.+.+.+.+..+ |+..++..+++.++..+.....+
T Consensus 317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG---LQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC---chhhhhhhHHHHHHHHHHHHHHH
Confidence 88888775 446778888888889999999999999988644 99988887777666655544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=110.21 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=110.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh---c-cchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL---A-VNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++..++.|++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 666665555666666777888999999999999999998887766555433322 2 234444556677788888888
Q ss_pred cccchhhhcccCCCCcchhhhHH-HHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGF-QIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
+...+++.|.+|.+.|+.+.++. ..+..+|..++|.+.+.+.+..+ .+|+..+...++.+++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88889999999999998888885 44556888999999999877543 358888888777777776666666664
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=111.82 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=125.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999998888888888888888888888888888888889999998888778888
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHH-HhccCCCCh
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTI-IAFFIPDTP 225 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp 225 (435)
+++.|..|++.|+++.+++.....+|..+|+.+.+.+.+..+ ++..+...+...++..+ ....+||.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT---PVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999998644 77777766655555433 345566544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=106.37 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=116.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 88899999999999999999999999999999999999988877777766554333 22222 2346688888888877
Q ss_pred chhhhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCCh
Q 043264 154 PIYLVEMAP-TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTP 225 (435)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp 225 (435)
.....+..+ +++|++..++.+....++..++|.+.+++.+..+ +|+..|.+.++..++..+. ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777777774 5788999999999999999999999999999765 4777787777666665554 45567764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=109.59 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=109.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--cch-h-HHHHHHhhhhccccc-c
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--VNM-G-MLFLGRVFTGLGIGF-I 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~-~-~l~~~r~l~G~~~g~-~ 149 (435)
|.+.....+......++..++.++.|+++||+|||+.++.+.++.+++.++.+.. ++. + ....+-++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 6777777777778888899999999999999999999999999988888776543 121 1 222333444444333 3
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh---cCCCCcchHHHHhhhHHHHHHHHHh-ccCCCCh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS---SLNFKRWRIAVSVSGFPATLMTIIA-FFIPDTP 225 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~---~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp 225 (435)
.+....++.|.+|+++|+++.++......+|..+++.+...+.+ ..++.+|++.|++.++.+++..+.. .+.||+.
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 46678999999999999999999999999999888766654441 0113568888888777766665554 4567764
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=105.48 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=113.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHH-HHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGV-SLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+..+.+++.+...++..++.++.|+++||+|||+... +..+..++. .+....++.+.+.+..++.|++.+...+..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence 788899999999999999999999999999999887544 444444433 344556778888888999999887777777
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
...+.|..| ++|++++++......+|..+||++++.+.+.. +++..|.+.+.+.++..+..
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~---g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL---GLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHH
Confidence 788888876 68899999999999999999999999999865 49999998887777766554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=110.68 Aligned_cols=148 Identities=14% Similarity=0.026 Sum_probs=114.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh---c--c------chhHHHHHHhhhh
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL---A--V------NMGMLFLGRVFTG 143 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~--~------~~~~l~~~r~l~G 143 (435)
|.+..+.++......++..++.++.|+++||+|||+.+.++.++..++.++..+ . + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999988888777766652 1 1 2223333333333
Q ss_pred ccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCC
Q 043264 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIP 222 (435)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~p 222 (435)
.......+....++.|.+|+++|+++.++......+|.++++.+.+.+.+.. +|++.|++.++++++..+.. ++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI---GVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccceehhHHHHHHHHHHHHheecc
Confidence 3333344666777899999999999999999999999999999999888754 49988888887777766654 4467
Q ss_pred CCh
Q 043264 223 DTP 225 (435)
Q Consensus 223 esp 225 (435)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=108.97 Aligned_cols=135 Identities=17% Similarity=0.065 Sum_probs=107.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHH--HHHHh--ccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGV--SLHAL--AVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. ....+ .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999998876554444333 22222 2566777788889999988899
Q ss_pred cccchhhhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPA 211 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~ 211 (435)
+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+ .|+..++...+..
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~ 390 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALA 390 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHH
Confidence 9999999999999999999998 456677889999999999988654 2777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=103.97 Aligned_cols=146 Identities=15% Similarity=0.061 Sum_probs=112.9
Q ss_pred ccccchhhHHHH-HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHH---Hhc-cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNS-SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLH---ALA-VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.+..+.++... ...++.+++.+++|+++||+|+|+.+.++.++..+..++. +.. ++.+.+.+.-++..++.|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 6668999999999999999999998877666555544322 233 45555555566655555555
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
.+...++..+..+++.++...++.+...++|..+++.+.+.+.+.. ||+..|.+.++.+++..+...++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999999999999999998888999998864 5999999988888887666555544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-10 Score=104.68 Aligned_cols=141 Identities=11% Similarity=0.034 Sum_probs=109.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH-HHHHHHHHHHHHHHh-----ccchhHHHHHHhhhhccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI-IGGIIYLIGVSLHAL-----AVNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~ 148 (435)
|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+...+ .++.+...+..++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999988764 333333343333322 24566777888888988776
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
..+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+.. ||+..+++.++..++..+...+
T Consensus 333 ~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 333 YVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHH
Confidence 544 345667765 468999999999999999999999999998864 4999998888777776655444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-10 Score=103.46 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=116.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++..++.++.++.++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999998888888899999999999999999998889888
Q ss_pred hhhhcccCCCCcchhhhHHH-HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQ-IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.++.+. +++++++..+... ...++|..+||.+++.+.+..+ + ..++..++++++.++.
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g---~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG---A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---H-HHHHHHHHHHHHHHHH
Confidence 888887 5566788888775 5667888999999999998654 5 3555555555554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=105.44 Aligned_cols=141 Identities=15% Similarity=0.071 Sum_probs=103.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhH--HH------HHHHHHHHHHHHHHhccchhHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGA--LI------IGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~--l~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 146 (435)
|.++.+.+++.+...++..++.++.|+++||+|||+. .. .+.++..+........++.+......++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence 7788889999999999999999999999999999961 11 111111111222222234444444445555554
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
+ ..+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+..+ +|+..+.+.++..++..+..
T Consensus 327 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 327 G-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG--SFAGALMVVAALALIGALSY 395 (399)
T ss_pred h-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC--chhHHHHHHHHHHHHHHHHH
Confidence 4 788899999999999999999999999999999999999999987532 28888888777766655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.9e-10 Score=104.87 Aligned_cols=130 Identities=21% Similarity=0.111 Sum_probs=107.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHH-HHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGV-SLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+.. ......++.+.+.+..++.|+..+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 7889999999999999999999999999999999999988877653333 233345666677777788887777778888
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHh
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSV 206 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~ 206 (435)
..++.|.+|+++|+++.++.+....+|..++|++.+.+.+..+ .|+..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g--~~~~~~~~ 400 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD--EYGTALAS 400 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHh
Confidence 8999999999999999999999999999999999999998654 26555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-10 Score=104.50 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=130.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccch--hHHHHHHHHHHHHHHHHHh--------ccchhHHHHHHhhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRK--GALIIGGIIYLIGVSLHAL--------AVNMGMLFLGRVFTG 143 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G 143 (435)
+|++..+...+.-+..+..++|++++|++.||+|.| +++.++++++.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999 8999988888666666655 677888999999999
Q ss_pred ccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
+..|..++...++.+|..|+++.+...|++....-....+||++-+.+.+..+ +-|+.+....++.++.+++..++++
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999875 4778877777777777666666544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=105.19 Aligned_cols=140 Identities=15% Similarity=0.030 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc----chhHHHHHHhhhhccccccccccchhhhccc
Q 043264 86 SSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV----NMGMLFLGRVFTGLGIGFINQTAPIYLVEMA 161 (435)
Q Consensus 86 s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (435)
.+..++..++.+++++++||+|||+.++++..+.+++..+.++.. +...+...-+...++.....+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 344556677889999999999999999888877777665555431 1111111111122222234456667789999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC-------CCcchHHHHhhhHHHHHHHHHhccCCCCh
Q 043264 162 PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN-------FKRWRIAVSVSGFPATLMTIIAFFIPDTP 225 (435)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~pesp 225 (435)
|.+.|+++.++.+....+|.++++.+.+.+.+..+ ..++...|.+.++..++..+..+++||+.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 99999999999999999999999999988876421 12355677777776666655566789975
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=103.73 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=93.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhc--cccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGL--GIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~ 152 (435)
|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-++.|+ +.....+.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence 6788888999999999999999999999999999999998887776665544433322212222223332 22233455
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
.+.++.|.+|+++|+++.++......+|..++|.+.+.+.+..+
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 66788999999999999999999999999999999999988644
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=102.16 Aligned_cols=140 Identities=16% Similarity=0.093 Sum_probs=118.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.+..+.|...++..+...++.++.|++.||+|||+.+.++.++.++...+...++|.+.+++.++++|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999999999999999999999999998888878889999999999999998776666666
Q ss_pred hhhhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 155 IYLVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.+..+..+++.++...+. .+....+|..+++.+++.+.+.. ||+..|.+.++..++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHHHHH
Confidence 677777887777776665 67889999999999999999864 4999999988777665554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=103.09 Aligned_cols=142 Identities=21% Similarity=0.104 Sum_probs=98.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc--cchhHHH-HHHHHHHHHHHHHHh--ccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA--GRKGALI-IGGIIYLIGVSLHAL--AVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~-~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.+..+.++....+.++..++.++.|+++||+ |||+... ....+..++.++..+ .++.+...+..++.|.+....
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP 364 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence 77888889999999999999999999999999 5554332 222333333332222 234444445555555543332
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHH-HHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVA-GASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
......+..|.+|+++||++.++.+....+|.. .+|.+.+.+.+..+ |+..|.+.++.+++..+...
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g---~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc---chHHHHHHHHHHHHHHHHHH
Confidence 333345677999999999999999888778765 57999999988654 99999888877776655543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-10 Score=106.95 Aligned_cols=122 Identities=7% Similarity=-0.000 Sum_probs=104.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhcccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
|.++.+.++......++..++.++.|++.||+|||+++..+..+..++..+..+. ++.+.+.+.-++.|++.+...+
T Consensus 293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999998888888999999999999999999999988888877766654 3334445567788888888888
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
....+..+..|+++|+.+.++.+....+|..+|+.+++.+.+..+
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999988876543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=101.48 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=110.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccc-hhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN-MGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.++.+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999888888888888877774 8888899999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 194 (435)
.+++.|..|+++|+++.++.+....+|..+++.+++.+.+.
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998774
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=97.44 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=134.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|++..+...+.....+..++|++++|++.||+|.|+++..+.++..+.++...+...-..+.+.-.+.|...|+.+..+
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S 362 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS 362 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence 49999999999999999999999999999999999999999999999999988888887788888899999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
.++..+..|+++-++..|+++...-.+..+||.+-+.+.+..+ +-|.-+....++..+.++..+++|++
T Consensus 363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999998876 36776666666666666666777664
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=90.52 Aligned_cols=146 Identities=20% Similarity=0.237 Sum_probs=114.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-------cchhHHHHHHhhhhccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-------VNMGMLFLGRVFTGLGI 146 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~ 146 (435)
+|+|.+|...+.....+|..+| ++.|.+.|++|++.++.+|.+...+|..+...+ .++|.+.+..++.|.+.
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~ 110 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS 110 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence 3999999999999999999874 888999999999999999999999998877664 36688888888888888
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
+.....+.....+.+| ++||.+.++.-...+++..+-..+...+.+. ..-+..+.....+.++.++...++++.
T Consensus 111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 7777777777788887 5799999999999999887776665555443 224455555555555555555554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=102.97 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=127.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|.++...|++.++..+|.++|++..+.+.+|+++++.+..+.++++++.+..+++++.+..++.-++.|++.....+..
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~ 328 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSL 328 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.+.+.+..|++.||++++++++....+..+|.++.|.+.+..+ -+..+.+.++..++..++
T Consensus 329 ~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g---~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 329 NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG---VRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999755 888887777655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=104.22 Aligned_cols=138 Identities=17% Similarity=0.101 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccch--hHHHHHHhhhhccccccccccchhhhcc
Q 043264 83 AYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNM--GMLFLGRVFTGLGIGFINQTAPIYLVEM 160 (435)
Q Consensus 83 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 160 (435)
+......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777889999999999999999999999998888888777654 4455566677777777888889999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCCh
Q 043264 161 APTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTP 225 (435)
Q Consensus 161 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp 225 (435)
+|++.|+.++++.+....+|.+++|.+.+ +.+ .++...+.+.+...++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999988 433 2356677777777777767777888864
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-09 Score=98.59 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=102.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHhhhhccccccccccch
Q 043264 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-VNMGMLFLGRVFTGLGIGFINQTAPI 155 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 155 (435)
++.+.+++.+...++..++.+++++++||+|+|+.+..+.++..++.++..+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999998888887777665 45677778888999999999999999
Q ss_pred hhhcccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 156 YLVEMAP-------TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 156 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+..+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9988865 4567899999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.3e-09 Score=98.35 Aligned_cols=140 Identities=14% Similarity=-0.005 Sum_probs=107.3
Q ss_pred ccccchhhHHHHHHH-HHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh------ccchhHHHHHHhhhhcccc
Q 043264 75 LFYSWKLTAYNSSLY-IAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL------AVNMGMLFLGRVFTGLGIG 147 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g 147 (435)
|.++++++++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 889999999988876 466778999999999999999998877665333332221 1233344455566667777
Q ss_pred ccccccchhhhcccCC-CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 148 FINQTAPIYLVEMAPT-KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
...+...+...+..++ +++++..++.+...++|..++|.+++.+.+..+ ++..|...+++.++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G---~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG---YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHH
Confidence 7777777887777766 788999999999999999999999999988654 888888887766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-09 Score=98.95 Aligned_cols=146 Identities=12% Similarity=0.000 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH--h--ccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA--L--AVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+..+.+...++..++..+++++.|+++||+|||+.+.++.++..+...... . .++....+..-++.+++.+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888899999999999999999988776655433332221 1 2232222222222223333334
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWS-GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
+....++.|.+|++.|+.+.++.+....+ .....|.+.+.+... + .|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g--~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-G--METAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-C--CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667889999999999999998755443 333477777755432 2 2555666665665665555444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=103.62 Aligned_cols=143 Identities=14% Similarity=-0.006 Sum_probs=98.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchh-------HHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKG-------ALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIG 147 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 147 (435)
|++..+.+.+.+++.++..++.+++|+++||+|||+ ...+..++.++..++....++.+...+.-++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998762 2223333333334444555666555555566666555
Q ss_pred ccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCC
Q 043264 148 FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIP 222 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~p 222 (435)
........++.+.. +++|+...++...+..+|..+++.+.. ..+..+|+..|.+.+++.++..+..++++
T Consensus 364 ~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 364 AACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 55555555666655 468999999987777777776665532 22223599999888877777766655554
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-09 Score=97.98 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=90.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHH-H---HhccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSL-H---ALAVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+..+.++....+.++..++.+++|+++||+|||+++..+.++..+.... . ...+++....+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 778888889988999999999999999999999999988765544332211 1 122344444444555666666666
Q ss_pred cccchhhhcccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHHhhcCC
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQI-FFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~ 196 (435)
+....++.|.+|++.|+.+.++... +..++..++|.+.+.+.+..+
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 6677889999999999999998544 444557779999999988765
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=100.17 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.+..+.++..+...++..++.++.|+++||+|||+.+....+......++....++.+.+.+..++.|++.+...+...
T Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY 360 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999554444444333333333356777788888999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFI 191 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l 191 (435)
+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999998865
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=98.15 Aligned_cols=142 Identities=10% Similarity=-0.045 Sum_probs=111.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhh-hccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTT-SAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
.++.+.+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.+++++++.+.+..++.|++.+...|...
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~ 319 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARE 319 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHH
Confidence 35677888888887777766666666665 56767777788888888888888888888888888889999888889999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-hHHHHhhhHHHHHHHHH
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRW-RIAVSVSGFPATLMTII 217 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~w-r~~~~~~~~~~~~~~~~ 217 (435)
+++.|..|+++||++.++.+....+|..+||.+++.+.+..+..+. ...+...++.+++..+.
T Consensus 320 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 320 TLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887532233 34555555555554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-10 Score=104.31 Aligned_cols=327 Identities=16% Similarity=0.101 Sum_probs=182.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhc---c--chhHHHHHHHHHHHHHHHHHhcc----chhHHHHHHhhhhc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA---G--RKGALIIGGIIYLIGVSLHALAV----NMGMLFLGRVFTGL 144 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~ 144 (435)
+|+++++.....+...+...+ -++.|.++|-+ | ||+-++++.++..++.+..+..+ +.....+.-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 499999998888887777665 67889999975 3 45555567777766666555543 45666677788889
Q ss_pred cccccccccchhhhcccC--CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc-C
Q 043264 145 GIGFINQTAPIYLVEMAP--TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF-I 221 (435)
Q Consensus 145 ~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~ 221 (435)
|.......+.++..|... ++.||...+.......+|.+++..+++.+.+..+ +|..|.+.+++..+..+..++ .
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~---~~~~f~i~~~~~~l~~~~~~~~~ 175 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG---PQGVFLISAALPLLMLIVALFLL 175 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC---CeEEehHHHHHHHHHHHHHHHhh
Confidence 999999999999999983 3336778888888899999999999999988654 888888877666666555444 4
Q ss_pred CCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHH-HHHHHHHHHHhhhhccccHhhhhccCchhHHHH-HHHHHHHHHhhc
Q 043264 222 PDTPSSLIQRGKVQQALKSLNQVRGTKFDSENE-LKYLIKYNEDMRIASETPYKMLLERKYRPHLLF-AIALPTFQALTG 299 (435)
Q Consensus 222 pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 299 (435)
+|.+. +.+.+.. ..+++ .+... .. .++.....++.++.+..++..+ ..++..+....
T Consensus 176 ~e~~~----~~~~~~~------------~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~- 234 (433)
T PF03092_consen 176 EERKV----RPADEVF------------SFGKEEVPCLF---GS-FREQLSELWRALQQRAIWQPILFFIFFFNLPPSI- 234 (433)
T ss_pred hhccc----cccchhh------------cccccccchhh---HH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-
Confidence 44110 0000000 00000 00000 00 0000112222222221111111 11111111000
Q ss_pred hhH-HHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 043264 300 FNL-NAVVGQLIVTSLG---IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375 (435)
Q Consensus 300 ~~~-~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 375 (435)
... ..++.. +..+ +++...+....+..++.++|..+..+...+..-|+++....++..+..+.-.... ...+
T Consensus 235 ~~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n 310 (433)
T PF03092_consen 235 SSASSFYFQT---DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWN 310 (433)
T ss_pred CCccEEEEEe---ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEe
Confidence 001 111111 2234 6776667777777777788877777666666777777665554443322211110 0000
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+- .-++.+..+.-.++........+-|.. .+.+|+.|+..-|+.+++..++.+
T Consensus 311 ~~~----Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~N 364 (433)
T PF03092_consen 311 LDL----GIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSN 364 (433)
T ss_pred eee----CcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHH
Confidence 000 001112222233334444445555553 556899999999999999888765
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-07 Score=85.25 Aligned_cols=334 Identities=11% Similarity=0.034 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh------c--c----chhHH---HHHHhhhhcccc
Q 043264 83 AYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL------A--V----NMGML---FLGRVFTGLGIG 147 (435)
Q Consensus 83 ~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~----~~~~l---~~~r~l~G~~~g 147 (435)
...-.-.+..++.++..|...||..|.+++..+.+.--++..+++. . + +-+.. ++.-.+.|.-.-
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 121 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER 121 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence 3333445667778899999999999999887776554333322221 1 1 11111 111112221111
Q ss_pred c-cccccchhhhccc------CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hc
Q 043264 148 F-INQTAPIYLVEMA------PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AF 219 (435)
Q Consensus 148 ~-~~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~ 219 (435)
. ......+.=.||. +++.+.+.++...-.-.+.-+++|++.+.+.+..+ .+....+.+...++..+. .+
T Consensus 122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s---~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS---PVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111112223443 23344566666666777789999999999988544 666666666665555543 11
Q ss_pred c----CCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHH
Q 043264 220 F----IPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQ 295 (435)
Q Consensus 220 ~----~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (435)
+ ....|. +..|++.++.+...+.-... .+.+.....+...+.-+.....++..++.+.....+-. .+.++.
T Consensus 199 ~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~al-alLY~T 273 (432)
T PF06963_consen 199 LLARVYNSVPA-LAVKKRSSESESSSDEESSS---ESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFAL-ALLYFT 273 (432)
T ss_pred HHHHHHHhChH-hcCCCCCccccccccccccc---cccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHH-HHHHHH
Confidence 1 123332 22222222111000000000 00000011111111111113455555555444443222 222232
Q ss_pred HhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhcc
Q 043264 296 ALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESR 375 (435)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 375 (435)
..+ +......|+...|+++...+..-....+.++.++++..++.+|+|..+.-..+......++.+..........
T Consensus 274 VLs----f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~ 349 (432)
T PF06963_consen 274 VLS----FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS 349 (432)
T ss_pred Hhc----CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222 2334455566679999999999999999999999999999999999888877777666665554443321110
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 376 SHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.. +..+....+..+++--+|. .++.....-+..|.+|+++||+..|+-++.+.
T Consensus 350 ~~-----~~~s~~~l~~gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~ 402 (432)
T PF06963_consen 350 PF-----SSISAYLLLGGIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQS 402 (432)
T ss_pred Cc-----hhhHHHHHHHHHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHH
Confidence 00 0112222222233322221 11222223456899999999999998777653
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=91.61 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=117.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhh-hccchhHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHhhhhcc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTT-SAGRKGALIIGGIIYLIGVSLHALAVN--------MGMLFLGRVFTGLG 145 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~l~G~~ 145 (435)
|.+++....+...+....-+...++|.++| ++||++.+.++.++..+|.++.+++.. ....+++-.+..+|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 778888888888888888899999999999 579999999999999999988877521 12356777888899
Q ss_pred ccccccccchhhhcccCCCC---cchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHHHhhhHHHHHHHHHh
Q 043264 146 IGFINQTAPIYLVEMAPTKW---RGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
.|+.-+...+...|.+++++ |-....++..+.++|.++++.+...+.+..+ ..+|...|.+.++..++..+..
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 5567888889999999999999888875431 2469999999888877766553
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=91.31 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=117.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-VNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|++.+.++++.-.+.++..+|..+.|+++|| +.|+.+.....+..+..+...+. ++.+..++.-++.|+..+......
T Consensus 243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~ 321 (394)
T COG2814 243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGL 321 (394)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHH
Confidence 8899999999999999999999999999999 99999998877777777666655 555566666777888777766666
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
...+++ ..++.+..+.+++....++|..+|..+++.+.++. ++....++.++..++..+..+.
T Consensus 322 ~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 322 QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---GYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHHH
Confidence 666777 44678999999999999999999999999999974 5999999998888877766543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=98.22 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=117.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-VNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+.+....+++.+.+.......+++.|++.||+++|+.+..+..+..++.....+. ++.+.+.+..++.|+|.+...|..
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 319 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE 319 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4566777888888888877888999999999999999999988888888777765 567777788899999998888888
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCCh
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTP 225 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp 225 (435)
...+.+..|++.|+++.+..+ ...+|..+||.+++.+.++.+ .+..|++.+....+..+. ....+|+|
T Consensus 320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP---PWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 889999999999999988655 455899999999999999754 666777765555554444 34466655
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=97.29 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=98.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc--cchhHH-HHHHHHHHHHH--HHHHhccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA--GRKGAL-IIGGIIYLIGV--SLHALAVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.+..+.+...+.+.++..++.++.|+++||+ ++|+.. ....+...+.. +......+.....+..+..|++....
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 354 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP 354 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH
Confidence 88899999999999999999999999999999 333332 22111111111 11111233333334444445433222
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
.........|.+|+++|+.+.++.+....+|..++|.+.+.+.+.. +|+..|++.++++++..+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~---g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 355 QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW---HWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc---ccHHHHHHHHHHHHHHHHHHH
Confidence 2233456789999999999999999999999999999999998864 499999888888777665443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=109.00 Aligned_cols=136 Identities=13% Similarity=0.035 Sum_probs=117.0
Q ss_pred ccccc-hhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSW-KLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+.. +.+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 78888 89999999999999999999999999999999999988888888888888888888899999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHH
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPAT 212 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~ 212 (435)
.+++.+..|++.||+++++.+....+|.++++.+++.+... + .++...+.+.+.+.+
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL-G-LSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh-c-cCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887766542 1 345556655554433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=93.54 Aligned_cols=122 Identities=15% Similarity=0.028 Sum_probs=98.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhc-cchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-GRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+..+.+.+.+...++.++++++.|++.||+ +||+.+..+.++..++.+...+.++..... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 78889999999999999999999999999999 566677778888888777777665433332 4567899999988887
Q ss_pred chhhhcccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043264 154 PIYLVEMAP-TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNF 197 (435)
Q Consensus 154 ~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 197 (435)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777765554 55678888888888888999999999999887653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-08 Score=94.28 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=98.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc--chhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|.++...++......++..++.++.+++.||+|+|+.+.++.++..++.++..+.+ +++.+.+..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555445555555677888999999999999999999999998888887777654 5677777788999999999999
Q ss_pred cchhhhcccCCC-------CcchhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 043264 153 APIYLVEMAPTK-------WRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195 (435)
Q Consensus 153 ~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 195 (435)
..++.+|..|.+ ++|...++.+....+|..+++.+.+.+.+..
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998888653 3588899999999999999999988876554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=96.65 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHH
Q 043264 282 RPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFI 361 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i 361 (435)
+++......+.++.............|.+.+++|.+..+.++..+...++..++.++.|++.||+|||+.+..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 34455555556565555566667777877788999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 362 CQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+.++..+. ++.+...+.-++.+++.+... |....++.|.+|+++|+++.++.+..
T Consensus 86 ~~~~~~~~---------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~rg~~~~~~~~~ 140 (412)
T TIGR02332 86 ASTATMFA---------------TGPESLYLLRILVGIAEAGFL-PGILLYLTFWFPAYFRARANALFMIA 140 (412)
T ss_pred HHHHHHHh---------------cCHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 77776653 344556666677777776553 44456779999999999999988754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=96.73 Aligned_cols=147 Identities=18% Similarity=0.079 Sum_probs=97.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHH---HHHHHHHhc--cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYL---IGVSLHALA--VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.++.+.++....+.++..++.+++|+++||+|+++....+..+.. ++.+..... .+.+.....-++.|++....
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 7888889999999999999999999999999975443223322221 121222222 23333334445555543222
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHH-HHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCC
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSG-VAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDT 224 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pes 224 (435)
.........|.+|+++|+.+.++.+....+| ..++|.+.+.+.+..+ |...+.+.....++..+. ...+||.
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---WDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2222345779999999999999998877776 5789999999988654 888887776665555554 3446664
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=92.76 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=123.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.++...|.+.+...+.-++...+..++.+|+|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCC
Q 043264 155 IYLVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDT 224 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pes 224 (435)
.|+++.+|+|-.++...+ .+.+.++|..+.+.++|.+.+..| .+..|++.+.+.++..+.. +.+++.
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G---~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG---FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC---cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998877777766 478899999999999999999754 8888888777766655553 445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-08 Score=90.85 Aligned_cols=136 Identities=13% Similarity=0.019 Sum_probs=107.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHH-HHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGII-YLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.+..+.+.+...+.++..++.++.+++.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.+...+..
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 888899999999999999999999999999964 4444444444 34444444556777788888999999999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHH
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMT 215 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~ 215 (435)
.+++.+..| +++++..+.......+|..+|+.+++.+.+..+ ++..+...++..++..
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g---~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG---LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---hhhHHHHHHHHHHHHH
Confidence 989998886 556778888888889999999999999988644 8888877766554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-08 Score=89.39 Aligned_cols=131 Identities=8% Similarity=-0.053 Sum_probs=105.3
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|+++.+.+...+.+..+..+|.+..+++.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998888888887766665554333 45568899999999999
Q ss_pred chhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHH
Q 043264 154 PIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFP 210 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~ 210 (435)
.+...+..|++ .+.+.++. ....+|..+.|.+.+.+.+..+ .+..+++..+.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g---~~~a~~v~~~~ 303 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG---IQLAFALPVPC 303 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc---chHHHHHHHHH
Confidence 99988888654 45566665 4566899999999999988644 77777654433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-07 Score=85.46 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=98.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccch
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPI 155 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 155 (435)
+++..--.-.++.+....+.+++.+.+.|+.|.|..+.++...+....+..-+-+ -+-+++.-.+.|+|.+..+..-..
T Consensus 47 i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ 125 (461)
T KOG3098|consen 47 ISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGG 125 (461)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccce
Confidence 3333333448888899999999999999999999999999999988877776555 556778899999999999999999
Q ss_pred hhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 156 YLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 156 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
+++|..+++.+.+..++.......+.++|..+-..+..
T Consensus 126 ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 126 YLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 99999999999999999988888888888766555443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-09 Score=99.07 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=132.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc--chhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG--RKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+.+..+.+.+.++..+...++.+..|+++|+.. ++....++++..+++.+.+.++++++.++..-.+.|+..|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988 455666788888888899999999999999999999999999988
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCC
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIP 222 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~p 222 (435)
....+.|..+.++-..+.|+.....+++.++||++++.+.+..+ +|...|...++..++....++..|
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 88899999999999999999999999999999999998888765 488899999988888777666655
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.8e-08 Score=90.59 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=105.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++.... ++.+.+++.-++.|++.+..
T Consensus 247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888899999999999999999999999888877777766553 35667778889999998887
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHH
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATL 213 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~ 213 (435)
.+......... ++++||++.+..+....+|..+|+.+++.+.+..+ +.......++.+++
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~ 386 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG---NGLFNLFNLANGLL 386 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc---hHHHHHHHHHHHHH
Confidence 77666655443 45889999999999999999999999999877544 54443444333333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-08 Score=88.78 Aligned_cols=134 Identities=27% Similarity=0.364 Sum_probs=113.3
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccc--hhHHHHHHhhhhccccccccccchh
Q 043264 79 WKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN--MGMLFLGRVFTGLGIGFINQTAPIY 156 (435)
Q Consensus 79 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (435)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 47899999999999999999999999999998888888776777777777776 8999999999999999999999999
Q ss_pred hhcccCC-CCcchhhhHHHH-HHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHH
Q 043264 157 LVEMAPT-KWRGAIGTGFQI-FFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATL 213 (435)
Q Consensus 157 i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~ 213 (435)
+.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||..+.........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 9999987 678888888888 5888889999888777765 445799966666555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=98.22 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=105.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc----cchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA----VNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.++.+.++......++..++.++.|++.||+|||+.+.++..+..++..+..+. .+.+.+....++.|++.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999998888888877632 345667777889999999888
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999999888865
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=86.97 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=112.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc---chh------HHHHHHhhhhcc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV---NMG------MLFLGRVFTGLG 145 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~------~l~~~r~l~G~~ 145 (435)
|++..+..+..........+..+++..+.||+|||+.++.+..+..+..++..... +.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999888887776551 111 123444443333
Q ss_pred cc-ccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCC
Q 043264 146 IG-FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPD 223 (435)
Q Consensus 146 ~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pe 223 (435)
.+ +..|...-+.+|.+|++.|..+.++......++..+-...-..+.+..+ = +.|++..+++++..+. ...+||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 22 3467778889999999999999999988888887777766666766544 2 5667777776666655 466999
Q ss_pred Ch
Q 043264 224 TP 225 (435)
Q Consensus 224 sp 225 (435)
+.
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 85
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-08 Score=91.08 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHH-HHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHH---Hhc-cchhHHHHHH----hhhhcc
Q 043264 75 LFYSWKLTAYNSSL-YIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLH---ALA-VNMGMLFLGR----VFTGLG 145 (435)
Q Consensus 75 ~~s~~~~~~~~s~~-~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r----~l~G~~ 145 (435)
|+++.+.+++.+.. ..+..++.+++|++.||+|||+.+..+..+..+..+.. ++. ++.+.+.+.- +..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88899999988665 45688999999999999999999887777666554433 343 4555555554 345556
Q ss_pred ccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC
Q 043264 146 IGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI 221 (435)
Q Consensus 146 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 221 (435)
.+...+....++.+..|.++ .++.+...++|..+++.+++.+.+.. ||+..|.+.++++++..+..+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~---G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 321 TAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAY---GWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776554 45555556777776777899998865 49999999888887776655433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=84.67 Aligned_cols=146 Identities=15% Similarity=0.031 Sum_probs=108.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHH-HHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIG-VSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|+|+...+.+.+..+.-.++.+++.|.++||+|++-..+.+..+..+. -....|+ ++.=.++..+.|+..+.....
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHH
Confidence 3999999999999999999999999999999999999888865554443 3333332 233345666778876666555
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHh-hhHHHHHHHHHhccC
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSV-SGFPATLMTIIAFFI 221 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~-~~~~~~~~~~~~~~~ 221 (435)
....++-..|+++.|.+.+..+...++|..+.|++++.+.+..+.+.|--+|.+ .+.+++....+.+.+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 666777888889999999999999999999999999999998765555544444 444444444333333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=93.21 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=88.8
Q ss_pred ccccchhhHHHHHHH-HHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----------cchhHHHHHHhhh
Q 043264 75 LFYSWKLTAYNSSLY-IAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----------VNMGMLFLGRVFT 142 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~ 142 (435)
|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++..++..+..+. ++.+.+....++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 888999998887666 6778999999999999999999998888887776655543 3456777888999
Q ss_pred hccccccccccchhhhcccCCCCcchhhhHHHHHHH
Q 043264 143 GLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFW 178 (435)
Q Consensus 143 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 178 (435)
+++.+...+...+++.|.+|+++||+..++.+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999999876643
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-08 Score=104.20 Aligned_cols=134 Identities=9% Similarity=-0.088 Sum_probs=111.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--------------------cchhH
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--------------------VNMGM 134 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~ 134 (435)
|.++.+.+++.+.+.++.+++.++.|+++|+.++++.+..+.++.+++.+...+. ++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 7889999999999999999999999999998888777776666666655544443 67788
Q ss_pred HHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHH
Q 043264 135 LFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFP 210 (435)
Q Consensus 135 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~ 210 (435)
+++..++.|++.+...+...+++.+.+|++.||++++..+....+|..+++++.+.+.... .+....+++.++.
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~~~~ 410 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999988886432 2456555554443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=87.58 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=118.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-cchhHHHH----HHhhhhccccccc
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-VNMGMLFL----GRVFTGLGIGFIN 150 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~ 150 (435)
.+....+.+.++..++=++.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+ ...++|+..+...
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 566677777788888888889999999999999999999999999998888887 55544333 3456999999999
Q ss_pred cccchhhhcccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHHhhcCCC---CcchHHHHhhhHHHHHHHHHh-ccCCC
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQI-FFWSGVAGASWINYFIMSSLNF---KRWRIAVSVSGFPATLMTIIA-FFIPD 223 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~---~~wr~~~~~~~~~~~~~~~~~-~~~pe 223 (435)
.+...++.+..|++.|+++.++++. ..++|..+|..++|.+.+..+. ..|...+.+.+...++..+.. ++.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999875 5789999999999999987652 235556666666655555443 33444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=91.66 Aligned_cols=119 Identities=14% Similarity=-0.074 Sum_probs=100.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
+|.++.+.|++.+...++..++++..+++.||.++|+++..+. +.++...+..+.++++...+.-++.|++.+...+..
T Consensus 236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~ 314 (393)
T PRK11195 236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPM 314 (393)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3788999999999999999999999999999999999888775 344445555667777777788889999998888888
Q ss_pred chhhhcccCCCC-cchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 154 PIYLVEMAPTKW-RGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 154 ~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.+.+.|..|++. +|++.++.+....+|..++..+.+.+..
T Consensus 315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888766654 7999999999999999999999886643
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=93.62 Aligned_cols=119 Identities=24% Similarity=0.174 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 299 GFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
+........|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--------- 90 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--------- 90 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH---------
Confidence 34444455677778899999999999999999999999999999999999999998888887777666543
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
++.+...+..++.+.+.+.... ....+..|.+|+++|+++.++.+...
T Consensus 91 ------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (385)
T TIGR00710 91 ------NNIETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVL 138 (385)
T ss_pred ------ccHHHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445555666666666655533 33567789999999999999887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-08 Score=85.17 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchh----HHHHHHhhhhccccccccccchhhhcccC
Q 043264 87 SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMG----MLFLGRVFTGLGIGFINQTAPIYLVEMAP 162 (435)
Q Consensus 87 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~----~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 162 (435)
+..+.-.-|.++.+++.||+|||+++..+.+++++..++...+.+-. +++.+|++ ..+.+.+.++|..|.+|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYP 464 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH----HhchheEEEEecCcccc
Confidence 34456677999999999999999999999999999998887774432 34455554 45567788899999999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 163 TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 163 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
.+-|+...|......-+|.++.|+++-.. + .+-..+..+.+...++..+...++|-
T Consensus 465 TavRatgvGtcSsmaRIggI~~p~iA~~~-e----~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 465 TAVRATGVGTCSSMARIGGIFSPVIAMRA-E----LSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhhcchhhhhhHHhhhhhhhhHHHHHh-c----cceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999999999999222 2 12334555666666666677777764
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=88.54 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=102.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHhhhhcccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL-AVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++... .++.+..++..++.+++.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 788999999999999999999999999999999999999988888877765543 4555666666666676655444443
Q ss_pred ch-hhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 154 PI-YLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 154 ~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.. ...+..+++.++.. ..+....+|..+||.+++.+.+.. .+|+..+.+.+...++....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHH
Confidence 43 33444444444443 346678899999999999998853 35888888877665555444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-08 Score=93.32 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=105.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc---cchhHHHHHHhhhhcccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA---VNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
|.++.+.|.......++..++.++.|++.||+|+|+.+..+.++..++.++.... ++.+......++.|+|.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 7899999999999999999999999999999999999998988888777655432 4556667788999999999999
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988854
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=2e-08 Score=93.89 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=93.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc-hhHHH-HHH-HHHHHHHHHHHh--ccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR-KGALI-IGG-IIYLIGVSLHAL--AVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~-~~~-~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.++.+.++..+...++..++.++.|++.||.++ |+... ... ....++...... ..+.+...+..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 7888999999999999999999999999998643 33222 222 222222222222 234555666777777766566
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHH
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIA 203 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~ 203 (435)
.+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~ 378 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG---WAGA 378 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc---cccc
Confidence 66667788999999999999999999999999999999999998644 8764
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9e-08 Score=89.97 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHH
Q 043264 283 PHLLFAIALPTFQALTGFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFI 361 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i 361 (435)
++.+....+.+...+..........+.+.+ ++|++..+.++..++..++..++++..|++.||+|.|+++.++..+..+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344555555555444444444444555544 6899999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 362 CQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
..+...+... ...++.+..++..++.+++ +..+.+ ....+++.+|+++||++.|+....
T Consensus 113 ~~~~~~~a~~----------~~~~s~~~lli~r~l~Gig-g~~f~~-~~~~vs~wfp~~~rG~A~Gi~~g~ 171 (462)
T PRK15034 113 PCVWLGIAVQ----------NPNTPFGIFIVIALLCGFA-GANFAS-SMGNISFFFPKAKQGSALGINGGL 171 (462)
T ss_pred HHHHHHHHHc----------ccCCCHHHHHHHHHHHHHH-HHhHHH-HHHHHHHHCCHhHhHHHHHHHHHH
Confidence 7776665311 0124556666667777765 444443 346678999999999999998543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=93.63 Aligned_cols=150 Identities=5% Similarity=0.002 Sum_probs=120.1
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHhhhh
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA----------VNMGMLFLGRVFTG 143 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G 143 (435)
.|.++.+.|.+.+...++.+++....+++.+|++.|+++.++.++.+++.+..... ++.+..+..-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 58999999999999999999999999999999999999999999999888654321 33345556678888
Q ss_pred ccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCcchHHH-HhhhHHHHHHHHHh
Q 043264 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN----FKRWRIAV-SVSGFPATLMTIIA 218 (435)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~----~~~wr~~~-~~~~~~~~~~~~~~ 218 (435)
++.+....+...++.+..|++.++...++.+...++|..+++.+++.+.+..+ +++.++.. .++.+..++.+...
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~ 442 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLL 442 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 99899999999999999999999999999999999999999999999988764 22333332 33334444444444
Q ss_pred ccCCC
Q 043264 219 FFIPD 223 (435)
Q Consensus 219 ~~~pe 223 (435)
.++|+
T Consensus 443 ~llP~ 447 (468)
T TIGR00788 443 HLLPR 447 (468)
T ss_pred HhCCC
Confidence 56785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=90.59 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=115.5
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHH
Q 043264 281 YRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIF 360 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 360 (435)
.+.+.++..++.+......--.+..-.|.+.++.++|.++.+.+.+...+..-++..+.|.++||.+.|+.+..++++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 44555666666555544334556677888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 361 ICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 361 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
++.+++++. ++.+...++..+.+.+-+.+++|.... +..-+|+++||+..++=|+.++
T Consensus 106 i~nil~Gfs---------------~s~~~~~~l~~lng~fQg~Gwpp~~~~-i~~Wfsr~eRG~~~siWn~shN 163 (448)
T COG2271 106 IVNILFGFS---------------PSLFLFAVLWVLNGWFQGMGWPPCART-ITHWFSRKERGTWWSIWNTSHN 163 (448)
T ss_pred HHHHHHhhh---------------hHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHcCccccCceEEEehhhhh
Confidence 999999875 467788888899999999999988754 4799999999999988777654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=78.10 Aligned_cols=306 Identities=13% Similarity=0.100 Sum_probs=168.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
++....++|.+.-..+-..++...+.|-++|+.|||+.-+.-++.++++++ .-.++++-.++++|.+-|+..+..+...
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 377888888888877778888899999999999999975555444444332 3346889999999999999999888888
Q ss_pred chh-hhcccCCCCcchhhhHHH--------HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCC
Q 043264 154 PIY-LVEMAPTKWRGAIGTGFQ--------IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDT 224 (435)
Q Consensus 154 ~~~-i~~~~~~~~r~~~~~~~~--------~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pes 224 (435)
.++ +.|.. ++|+.-.-+.. .+..+-.+++.+.+..+.+..+ .|--.+|-..+....+...+.+-
T Consensus 146 EsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~---- 218 (454)
T KOG4332|consen 146 ESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILS---- 218 (454)
T ss_pred HHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHh----
Confidence 776 45654 34443222221 2223333444555555555443 33444454443333332222111
Q ss_pred hhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHH
Q 043264 225 PSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNA 304 (435)
Q Consensus 225 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (435)
.|-...+++.|.+..+... +...+.+.. ..+..+...+...+....+....
T Consensus 219 -~W~ENygdps~~kdlltqf-------------------------~gaa~aiaS---D~ki~LLG~iqsLFE~smytFVF 269 (454)
T KOG4332|consen 219 -SWSENYGDPSENKDLLTQF-------------------------KGAARAIAS---DEKIALLGAIQSLFEGSMYTFVF 269 (454)
T ss_pred -hhhhccCChhhhHHHHHHh-------------------------hHhHHHHhc---chHHHHHHHHHHHHhhhhheeee
Confidence 2222223322211111111 011111111 11222333333333333233344
Q ss_pred HHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcch--HHHHHhHHHHHHHHHHHHHHHHhhccCCCCcc
Q 043264 305 VVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRR--IMLIVGGCQIFICQVILAILMASESRSHGTSI 381 (435)
Q Consensus 305 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 381 (435)
.|.|.+- ++.+.+ -|.+.+...+..++|+-+..++..|-..| ..+.+.+.+.+..+.+..........
T Consensus 270 LWTPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~------ 340 (454)
T KOG4332|consen 270 LWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS------ 340 (454)
T ss_pred eecccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC------
Confidence 4555432 111211 36777778888888887777776654332 34445555555555444444332221
Q ss_pred ccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 382 FSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
..+..-.++.++++-.+.+..|+++. -+-.+..|++.|++.+-+
T Consensus 341 --kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNf 384 (454)
T KOG4332|consen 341 --KESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNF 384 (454)
T ss_pred --cCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhh
Confidence 23334457778888888888877764 555788999999987643
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=91.80 Aligned_cols=146 Identities=16% Similarity=0.031 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHH--------HHHHHHH--HHHHHHHHh-ccchhHHHHHHhhhh
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGAL--------IIGGIIY--LIGVSLHAL-AVNMGMLFLGRVFTG 143 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G 143 (435)
|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... .+..+.... ..+....++.-++.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 78899999999999999999999999999998755321 1111111 111111222 234444444555555
Q ss_pred ccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC
Q 043264 144 LGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI 221 (435)
Q Consensus 144 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~ 221 (435)
.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+..+..+|+..|.+.++..++..+.....
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 55555555554555676654 799999999999999999999998887764332348899988887777776665444
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=84.70 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHH
Q 043264 287 FAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVIL 366 (435)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~ 366 (435)
..........+..........+.+-++.|+|+.|.+++..+..+.+.+.+++.|.+.||+|.|++...+.++..+-++.+
T Consensus 17 ~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~ 96 (417)
T COG2223 17 WLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGL 96 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHH
Confidence 33333333333334444445555557899999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 367 AILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+... .++.|..+++-.+.+++-+..... ..++++-||+|++|.+.|+.- .++
T Consensus 97 ~~a~~------------~~~~~~ll~~gll~G~~GasFav~--m~~~s~~fP~~~qG~AlGI~g-~GN 149 (417)
T COG2223 97 AFAVT------------YPSTWQLLVIGLLLGLAGASFAVG--MPNASFFFPKEKQGLALGIAG-AGN 149 (417)
T ss_pred HHHcc------------CCchHHHHHHHHHHhcccceehcc--cccccccCChhhhhHHHHHhc-ccc
Confidence 77632 233356666666666654444333 467799999999999999986 443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-07 Score=84.26 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=94.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc---hhHHHH-HHHHHHHHHHHHHhccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR---KGALII-GGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+.. .+...++..+...++. ++++||..| |+.... ..++.++...+.++..+....++.-++.|++.....
T Consensus 223 g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 223 GLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred CCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhH
Confidence 44543 4566666666555554 677777654 343332 344444444444555555555556667777777777
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCC
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPD 223 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pe 223 (435)
+...++.+|.+|++.|+++.++.+....+|..++|.+.+.+.. +-+..|.+.+++.++..+....+++
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7788899999999999999999999999999899888877763 3566777777776666655444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-07 Score=87.31 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=105.2
Q ss_pred chhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc--chhHHHHHHhhhhccccccccccchh
Q 043264 79 WKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTGLGIGFINQTAPIY 156 (435)
Q Consensus 79 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (435)
...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+.......++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5678888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhcccCC-------CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 157 LVEMAPT-------KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 157 i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
++|..+. ++.|...+.......+|..+++.+.+.+.+..+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999873 334778888999999999999998888776543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-07 Score=79.68 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
...|.+.+...+-++.++.-.+++ |++..|- |+|..+.|++.+...+.....++..
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WL------P~ili~~------------------G~sa~~aG~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWL------PAILIDR------------------GLSAAEAGSLLSLMQLAQLPTALLI 263 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHH------HHHHHHc------------------CCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 345677777666666655555553 5555544 9999999999999999999999999
Q ss_pred HHhhhhc-cchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCC-CcchhhhHHHHHH
Q 043264 100 GRLTTSA-GRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTK-WRGAIGTGFQIFF 177 (435)
Q Consensus 100 g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~ 177 (435)
..+++|. .+|+..+....++.++.+.+.+.+.-..+.- -++.|+|.|..++.+...+.+..++. +-++..++.|...
T Consensus 264 P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 264 PLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 9999964 5677777788888888888877765433333 48999999999999999998887544 3455666666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 178 WSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 178 ~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.+=..+||.+.|++.|..+ +|+......+...+...+.
T Consensus 343 YllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHH
Confidence 6666789999999999876 6988877766665555544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=90.29 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh-cchHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 043264 299 GFNLNAVVGQLIVT-SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV-GRRIMLIVGGCQIFICQVILAILMASESRS 376 (435)
Q Consensus 299 ~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 376 (435)
.++.+..++|.++. ++|++..+++.......+...++.+++|+++||+ |||+.+.++.++..++.+++...
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~------- 96 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS------- 96 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-------
Confidence 46667778888875 4799999999999999999999999999999998 99999999998888887655421
Q ss_pred CCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChh--hhhhhhHHHHhhhc
Q 043264 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIE--VRSAGQGLSTAISF 434 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~ 434 (435)
........+...+...+.+.. .+...++.+|.+|++ .|+++.++.++..+
T Consensus 97 -------~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n 148 (493)
T PRK15462 97 -------EIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGN 148 (493)
T ss_pred -------hcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHH
Confidence 111112222233333444433 233356789999986 69999998887654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=89.55 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=95.8
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHH
Q 043264 288 AIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILA 367 (435)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 367 (435)
+..........+........|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 33333344444455556678888888999999999999999999999999999999999999999988888777766655
Q ss_pred HHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 368 ILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.. ++.+...+..++.+.+.+.... ....+..|.+|+++|+++.++.+...
T Consensus 87 ~~---------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~ 136 (392)
T PRK10473 87 LA---------------ETSSLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGIT 136 (392)
T ss_pred Hh---------------CcHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 42 2334444555556655554433 34567789999999999999877653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=87.61 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=93.0
Q ss_pred HHHhhchhHHHHHHHH-HHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHh
Q 043264 294 FQALTGFNLNAVVGQL-IVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMAS 372 (435)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 372 (435)
+..+........+.|. +.+++|+++.+.++......++..++.++.|++.||+|||+.+..+..+..++.+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~-- 88 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV-- 88 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh--
Confidence 3334445666777885 5578999999999999999999999999999999999999999999888888877765531
Q ss_pred hccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 373 ESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
.+.+...+..++.+.+.+ ...+ ...++.|.+|+++|+++.++...
T Consensus 89 ------------~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~~r~~~~~~~~~ 133 (366)
T TIGR00886 89 ------------QSYSVLLLLRLFIGIAGG-SFAS-CMPWISFFFPKKIQGTALGLAAG 133 (366)
T ss_pred ------------hhHHHHHHHHHHHHHhch-hhHh-HHHHHHHhcCHhhhhHHHHHHHH
Confidence 144555555666665533 3333 34677899999999999998764
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=84.55 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=94.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHhhhhccccccccc
Q 043264 78 SWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL-----AVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 78 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
....+++.+...++.+++.+++++++||+|+|+.+.++..+..++.+...+ .++.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777889999999999999999999999888877766655432 345667777788899999999999
Q ss_pred cchhhhcccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 153 APIYLVEMAP-------TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 153 ~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
..++++|..+ .++.|...+......-+|..+++.+.+.+.+..+
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999965 2334557888888899999999999988876443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-07 Score=80.74 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhccc
Q 043264 82 TAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMA 161 (435)
Q Consensus 82 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (435)
+.+.-+-.+...+.-+.+.+..+|...+.-+..+.++..++.++.++++|.+.-+++-.+.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666677777888899988777777788889999999999999999999999999999988888877744 45
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc-cCCCC
Q 043264 162 PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF-FIPDT 224 (435)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pes 224 (435)
++ ...+-+..+.+.+.++|+..-..+.+ .+ .+-|..+.+...+.++..+..+ .+|++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 43 35678888888888888877766666 43 4457777776655554444433 35543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=86.53 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 299 GFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
.........|.+.+++|.++.+.++......++..++.++.|++.||+|||+++..+..+..++.+++....
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-------- 112 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------- 112 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 356677788888788999999999999999999999999999999999999999999999888887653221
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
..++.+..++..++.+.+.+...... +.++.|..|+++|...+++.+..
T Consensus 113 ----~a~~~~~ll~~r~l~G~g~g~~~~~~-~~~v~~~~~~~~~~~~~s~~~~~ 161 (438)
T PRK10133 113 ----EIMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_pred ----hcCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhCChhhHHHHHHHHHHH
Confidence 12455667777788888877765544 45567877777776666665544
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=75.74 Aligned_cols=117 Identities=8% Similarity=-0.096 Sum_probs=88.7
Q ss_pred ccchhhHHHHHHHHHHHHH-HHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--c--c--------------------
Q 043264 77 YSWKLTAYNSSLYIAGIFS-ALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--V--N-------------------- 131 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~-------------------- 131 (435)
+.+.+.++.+...+...+. .++.+++++|++|++.+-.....+.....++++. + +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467889988888877766 8999999999999999988877777777666655 1 1
Q ss_pred -------hhHHHHHHhhhhcccccccc-ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 132 -------MGMLFLGRVFTGLGIGFINQ-TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 132 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.|...+......+-...... .-..++.|.+..++-.|..+++..+.++|.++++.+..++.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333344444444444 667788999999998999999999999999999999888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-07 Score=83.81 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHcCCCCCc-hHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 301 NLNAVVGQLIVTSLGIRLKD-VFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 301 ~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
....+..|++.+++|++.++ .+.+......+..+..+++|++.||+|.|+++.++.+...+..++.++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 44566677777899999999 9999999999999999999999999999999999998888888887764
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.+.+...+.-+++|++-+..+ +. +.++.+.+|+++|+++.|+.++..
T Consensus 113 -----~Sl~~L~i~R~llGvaEA~~~-A~-~syI~~WfP~kER~ratsi~~sg~ 159 (511)
T TIGR00806 113 -----TSVWHMQLMEVFYSVTMAARI-AY-SSYIFSLVPPSRYQRAAAYSRAAV 159 (511)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHCCHHHHHHHHHHHHHHH
Confidence 456778888888999888887 44 577789999999999999987754
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=85.61 Aligned_cols=121 Identities=6% Similarity=0.003 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 300 FNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
........|.+.++.|.+..+.++..+...++..++++..+++.||+|||+.+..+..+.+++.+++....
T Consensus 19 ~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--------- 89 (410)
T TIGR00885 19 NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--------- 89 (410)
T ss_pred HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34455677888888999999999999999999999999999999999999999999999888877654331
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
..++.+..++..++.+.+.+....+. ..+..+..|+++|++..++.+...
T Consensus 90 ---~~~~~~~~l~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (410)
T TIGR00885 90 ---EIMNYTLFLVGLFILTAGLGFLETAA-NPYILVMGPESTATRRLNLAQSFN 139 (410)
T ss_pred ---hhccHHHHHHHHHHHHhhHHHHHhhh-hHHHHHHCCHhHHHHHHHHHHHHH
Confidence 12345566677777788777765544 456678889999999888776543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.2e-08 Score=87.42 Aligned_cols=117 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhh----hccchhHHHH-HHHHHHHHHHHHHhccch-----------------
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTT----SAGRKGALII-GGIIYLIGVSLHALAVNM----------------- 132 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~~~~~----------------- 132 (435)
|++....+.+-....+...+.+|+.|..+| ||||||.++. +..+..++.++..++.++
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 888888888888888899999999999999 5899888776 556666666677766443
Q ss_pred hHHHHHHhhhhccccccccccchhhhcccCCCCcch-hhhHHHHHHHHHHHHHHHHHHHH
Q 043264 133 GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGA-IGTGFQIFFWSGVAGASWINYFI 191 (435)
Q Consensus 133 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~l 191 (435)
..++++--+.=++.......+-+++.|...+++|.+ +.+.+....++|..+|..++.+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 234444445556667788899999999997666666 99999999999999998887643
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=87.10 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=98.6
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc---chhHHHHHHhhhhccccccc
Q 043264 75 LFY-SWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV---NMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.+ ..+.+.+.+...++..++.++.|++.||+|+|+...+......+..+...+.. +....+..-++.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 317 (352)
T PF07690_consen 238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF 317 (352)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 778 68899999999999999999999999999998888887777777777666553 45777778889999999999
Q ss_pred cccchhhhcccCCCCcchhhhHHHHHHHHHHHHHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGAS 185 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 185 (435)
+....++.|..|+++|+++.++.+...++|..++|
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-07 Score=78.40 Aligned_cols=318 Identities=11% Similarity=0.047 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcc
Q 043264 88 LYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRG 167 (435)
Q Consensus 88 ~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 167 (435)
..-.+.+.-.+.=.+.|..-.|+++++-.+.......+..+.++.+.+=+.-++.|..+ +...+-++++-+.++++++.
T Consensus 51 wTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEIAYysYIYs~Vd~~~Yq 129 (433)
T KOG3810|consen 51 WTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEIAYYSYIYSKVDPEMYK 129 (433)
T ss_pred hhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHHhhhheeeeecCHHHHH
Confidence 33445566666778899999999999988888888889999999999999999999875 45667788899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHHHHHHHHHHhCC
Q 043264 168 AIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGT 247 (435)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~~~~~~~~ 247 (435)
++.+....+.-.|...|..++..+.+... .++...-.+......+..+..+++|..+|.+.-+.+.++-. ..+. +
T Consensus 130 rvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~--e 204 (433)
T KOG3810|consen 130 RVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDL--E 204 (433)
T ss_pred HHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccc--h
Confidence 99999999999999999999988877543 34555555555555555566778888776555444433210 0000 0
Q ss_pred CcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCC--CchHHHH
Q 043264 248 KFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRL--KDVFPIL 325 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~ 325 (435)
+.+.+.+..+..+ .....-...+.+. .+++.++...+.+....++++-...|...+-++..-.+ ...|..-
T Consensus 205 ~~~~~~~~~~~l~---~~~~~l~~~l~~~----y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~ve 277 (433)
T KOG3810|consen 205 EMNPQASYMSYLR---GAFVLLWRDLQEC----YSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVE 277 (433)
T ss_pred hcCccchhhHHHH---HHHHHHHHHHHHH----hcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHH
Confidence 0000000000000 0000001112222 22233344444455555566667777777666653111 1124455
Q ss_pred HHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcc
Q 043264 326 IIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSW 405 (435)
Q Consensus 326 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (435)
++..+.+.++.+..|++.-+..|+.-+.++......+.+++... ...+.|+..+...++...+....
T Consensus 278 Av~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-------------~t~~Iw~~Ya~yvlfr~~y~l~i 344 (433)
T KOG3810|consen 278 AVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-------------QTQHIWVCYAGYVLFRVIYQLTI 344 (433)
T ss_pred HHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-------------cccceehhhhhHHHHHhhHhhhh
Confidence 66667777778888888665555533322222222222222221 44668888888888877777664
Q ss_pred ccccceeecccCChhhhhhhhHHHHhh
Q 043264 406 GPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 406 ~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+ +...-+++....|.-|...|+++.+
T Consensus 345 t-iA~~~iA~nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 345 T-IATFQIARNLSSELFGLVFGINTFV 370 (433)
T ss_pred h-HHHHHHHHhhhhhhheeeeehHHHH
Confidence 3 3223334555667777777776654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=85.16 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccc
Q 043264 303 NAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIF 382 (435)
Q Consensus 303 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 382 (435)
.....|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 27 ~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------- 93 (394)
T PRK11652 27 YVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------------- 93 (394)
T ss_pred HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3344677778899999999999999999999999999999999999999998887777766655432
Q ss_pred cchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 383 SKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
++.+..++..++.+.+.+.. .+....+..|.++.+.++.+.+..+.
T Consensus 94 --~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (394)
T PRK11652 94 --HSLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNM 139 (394)
T ss_pred --ccHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23445555556666555433 23444566788898889888776654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=85.93 Aligned_cols=136 Identities=9% Similarity=0.099 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHhH----HHhhhhccchhHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHhhhhcccc
Q 043264 81 LTAYNSSLYIAGIFSALMA----GRLTTSAGRKGALIIGGIIYLIGVSLHALAVN---------MGMLFLGRVFTGLGIG 147 (435)
Q Consensus 81 ~~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 147 (435)
.+++.++..+...+..++. +++.||++.++.+.++.++.+++.+..++..+ .++++..+++.|+|+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666677776666666665 66666777778889999999999888777654 4688899999999999
Q ss_pred ccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC------C-CCcchHHHHhhhHHHHHHHH
Q 043264 148 FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL------N-FKRWRIAVSVSGFPATLMTI 216 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~------~-~~~wr~~~~~~~~~~~~~~~ 216 (435)
...|...+++.+..|++.||+++|.+..+..+|..++..+........ . ..+..+.|...++.+++..+
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888888777766664332100 0 01255677666665554433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-06 Score=79.58 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---h-ccchhHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---L-AVNMGMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 150 (435)
|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+.+...++-.+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999988766544333222 1 2344555555555555555556
Q ss_pred cccchhhhcccCCCCcchhhhHHHHH-HHHHHHHHHHHHH
Q 043264 151 QTAPIYLVEMAPTKWRGAIGTGFQIF-FWSGVAGASWINY 189 (435)
Q Consensus 151 ~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~ 189 (435)
......+.|..| ++|+++.++.... ..+|..+++.++.
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777765 7889888886543 4566677766654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=83.58 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHH----hhhh-ccchhHH--HHHHHHHHHHHHHHHh---------ccchhHHHHHHhhhhc
Q 043264 81 LTAYNSSLYIAGIFSALMAGR----LTTS-AGRKGAL--IIGGIIYLIGVSLHAL---------AVNMGMLFLGRVFTGL 144 (435)
Q Consensus 81 ~~~~~s~~~~~~~i~~~~~g~----l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 144 (435)
.+++.++..+..++.+++..+ +.|| .+++... .+|.++.+++....++ ..|+++++...++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 678888888888888888665 4443 2333434 6788888888777764 4688999999999999
Q ss_pred cccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 145 GIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 145 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
|.....|...++++|..|++.||++++++..+..+|..+++.+....... .+|...|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888876553 347777777776666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=82.37 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh--ccchhHHHHHHhhhhccccccccccchhh
Q 043264 80 KLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL--AVNMGMLFLGRVFTGLGIGFINQTAPIYL 157 (435)
Q Consensus 80 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 157 (435)
..+.+.....+..+++.+++++++||+|+|+.+..+.++..+......+ .++.+.+++..++.|++.+...+...+++
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677888889999999999999999999888766654443333 35677788888999999999999999999
Q ss_pred hcccCC-------CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 158 VEMAPT-------KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 158 ~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
+|..+. +..|...+.......+|..+++.+++.+.+..+
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 998852 223556788888889999999999998877654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-06 Score=78.79 Aligned_cols=118 Identities=12% Similarity=-0.025 Sum_probs=91.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHH---Hh--ccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLH---AL--AVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.++.+.++......++..++.+..+++.||+|+|+.+....+...++.+.. .. .++.+..++.-.+.|++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 7888889998888888999999999999999999987766555544443322 22 345555666677888888888
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.+.......|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888888777775 579999999998877777888888877765
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.2e-07 Score=85.39 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccch
Q 043264 306 VGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKR 385 (435)
Q Consensus 306 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
-+|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+++..+..+.+++.+..... +
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------------~ 102 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------------T 102 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------------C
Confidence 3445557789999999999999999999999999999999999999998888777776665542 3
Q ss_pred hhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 386 SAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+.+..++.-++.+.+.+.. .+..+.+..|.+|+++|++++++.+..
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFI-ATVGYVTVQEAFGQTKGIKLMAIITSI 148 (413)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666666665433 334456778999999999988876654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-07 Score=81.83 Aligned_cols=132 Identities=21% Similarity=0.226 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHH
Q 043264 286 LFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~ 365 (435)
+....+....+..--+.+....+..-+.+|.+....|++.....++..+++++.|++.||+.|++++.+|..+-.++.+.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 34444444444444444555555555668999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 366 LAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
.++. ...|..+++-.+.|+|-+.. .|+...+++|.+|.++|++..++.+...
T Consensus 115 ~~fs---------------~~Fwq~~l~R~~vGiGeAs~-~~ia~s~IaD~f~~~~Rs~~~~ify~~i 166 (493)
T KOG1330|consen 115 SGFS---------------NHFWQVLLCRGFVGIGEASY-SPIAPSLIADSFPDDKRSRVLGIFYFAI 166 (493)
T ss_pred HHHH---------------HHHHHHHHHHHHhccchhhh-cccchhHhhhcCcchhhhHHHHHhhhhc
Confidence 8765 56788888899999987655 5666788899999999999999988764
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-05 Score=73.49 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=101.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhcc--chhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAV--NMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
|.++....+.......+.+++.+++.++.+|+|+|+++..+.++..++.++..+.+ +.+..++..++.++|.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 44556667777788888888899999999999999999999999999999988886 7788889999999999999999
Q ss_pred cchhhhcccCC-------CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043264 153 APIYLVEMAPT-------KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196 (435)
Q Consensus 153 ~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 196 (435)
..++++|..+- ++-|...+......=+|..++..+.++.....|
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999888752 333566777777777888888877777766554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=82.81 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=84.3
Q ss_pred chhHHHHHHHHHH-HHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhh-hcchHHHHHhHHHHHHHHHHHHHHHHhhccC
Q 043264 299 GFNLNAVVGQLIV-TSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDR-VGRRIMLIVGGCQIFICQVILAILMASESRS 376 (435)
Q Consensus 299 ~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 376 (435)
+++....+++.++ +++|++..++.+..........+..+++|+++|| +|||+++..+.++..++.+.+.+..
T Consensus 29 ~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~------ 102 (489)
T PRK10207 29 GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL------ 102 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc------
Confidence 3556666666666 5689999888888888888888888899999999 9999999999999999887776531
Q ss_pred CCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhh--hhhhhHHHHhh
Q 043264 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEV--RSAGQGLSTAI 432 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~ 432 (435)
.......+...+.+.+.+... |....++.|.+|++. |+.++++.++.
T Consensus 103 --------~~~~ll~~~~~l~~ig~g~~~-~~~~~li~~~~p~~~~~~~~~~~~~~~~ 151 (489)
T PRK10207 103 --------LKPDLIFIALGTIAVGNGLFK-ANPASLLSKCYPPKDPRLDGAFTLFYMS 151 (489)
T ss_pred --------cchhHHHHHHHHHHhcccccc-CCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence 112223344555555555543 344577899998874 46666555543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=78.66 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 300 FNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
...+.+++=..+++.+-.+.--|......-.+.++.-+..+++++|+|+-+++..++.+..+-++.+..+
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3444445544567777666667777778888899999999999999999999999888888777766654
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
.++|..+..-++-++.++..|..+. +|++...|++.|+++.++....
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~ 503 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGI 503 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHH
Confidence 7888899999999999999988775 8889999999999999988754
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-06 Score=66.40 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=100.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
++++..--.-.++.+....+.+++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..++...
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 4455555566777888888999999999999999999999999988655443 567788999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.++.+..++++|++..+++......+.++|.++...+.+
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988888898888887776644
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-07 Score=84.57 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=125.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+-.+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+..++.+|.|+.+...+++|+..+..+.++.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55667778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHH-HHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 155 IYLVEMAPTKWRGAIGTGFQI-FFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
+|++...|++-|..+.++.+. ..++|--+|.++++.+.+..+ -|..|.+.++.+++.++..
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg---~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG---ARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh---hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 578889999999999988654 7888888877777665554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-05 Score=74.19 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccc--hhHHHHHHhhhhccccccccccchhh
Q 043264 80 KLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVN--MGMLFLGRVFTGLGIGFINQTAPIYL 157 (435)
Q Consensus 80 ~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i 157 (435)
..+.+...+.++.+++.+++++++||+|+|+.+..+..+..+..++..+.++ ...+++.-++.|++.+...+...+++
T Consensus 264 ~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 264 VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888899999999999999999999887655544444444333322 23344555667877777676667777
Q ss_pred hcccC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 043264 158 VEMAP-------TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195 (435)
Q Consensus 158 ~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 195 (435)
.|..+ .++.|...+......-+|..+++.+++.+.+..
T Consensus 344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77765 222244456666788889888888888777543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=68.46 Aligned_cols=134 Identities=12% Similarity=0.025 Sum_probs=84.7
Q ss_pred hhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhh-----hcc
Q 043264 33 GLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTT-----SAG 107 (435)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~G 107 (435)
...+|...+..+ +.|-+.+.= |+|-++.+...-++.=- .--+.+.++.| |+|
T Consensus 40 YllQGiP~GL~~---~iP~lL~ak------------------~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~G 96 (510)
T KOG3574|consen 40 YLLQGIPLGLIG---AIPLLLQAK------------------GVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFG 96 (510)
T ss_pred HHHcCCchhHhh---hhHHHhcCC------------------CcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhc
Confidence 467787777776 234444321 66666665544333211 23467888899 999
Q ss_pred chhHHHH-HHHHHHHHHHHHHhc-----------cchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHH
Q 043264 108 RKGALII-GGIIYLIGVSLHALA-----------VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQI 175 (435)
Q Consensus 108 rr~~l~~-~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (435)
|||..++ +..+.+....+.+.. ++...+...-++.-+..+.-..+.-.+.-....+++-|-+......
T Consensus 97 rrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~V 176 (510)
T KOG3574|consen 97 RRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSV 176 (510)
T ss_pred cccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence 9998776 555555555554443 2222333344555666677777788888888888888888888877
Q ss_pred HHHHHHHHHHHHHH
Q 043264 176 FFWSGVAGASWINY 189 (435)
Q Consensus 176 ~~~~g~~~~~~l~~ 189 (435)
+.+.|.+++..+--
T Consensus 177 g~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 177 GQTAGYFLGNVVFL 190 (510)
T ss_pred HHhhhHHhhcceee
Confidence 77777777765443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=77.79 Aligned_cols=133 Identities=17% Similarity=0.068 Sum_probs=104.8
Q ss_pred HHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccch--------hHHHHHHhhhhccccccccccchhhhcccC
Q 043264 91 AGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNM--------GMLFLGRVFTGLGIGFINQTAPIYLVEMAP 162 (435)
Q Consensus 91 ~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 162 (435)
++..|-.+...+.|++|||+..+.+.+++.+..+..++..|. ..+.+..++.-+| .......+-+|.+|
T Consensus 360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP 436 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP 436 (538)
T ss_pred ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence 333477778889999999999999999999999999988761 2333344444444 33445566799999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC--CCCcchHHHHhhhHHHHHHHHHhccCCCChh
Q 043264 163 TKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL--NFKRWRIAVSVSGFPATLMTIIAFFIPDTPS 226 (435)
Q Consensus 163 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~ 226 (435)
.+-|+..-++.....-+|.+++...-.++.++. ...+.|+.+++.+.+.++..+..+++||+.+
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 999999999999999999999998888887722 1245899999999999988888888999863
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=78.59 Aligned_cols=122 Identities=11% Similarity=0.145 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 300 FNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
.+.+..+.+.+.+++|++..+.+....... ......++.|++.||+|+|+++.++.+...++.++.++.....
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~------ 115 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV------ 115 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 456667788888889999988887776533 3345566789999999999999999999999988887652100
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...+.+...+..++.+.+.+...... ...+.+.+| ++||++.|+..+..
T Consensus 116 ---i~~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~ 164 (591)
T PTZ00207 116 ---IEGSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFT 164 (591)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHH
Confidence 11345555666666666655443333 344578887 78999999887653
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.3e-06 Score=78.66 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=97.1
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccch--------hH-HHHHHHHHHHHHHHHHhccchh------HHHHH
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRK--------GA-LIIGGIIYLIGVSLHALAVNMG------MLFLG 138 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--------~~-l~~~~~~~~~~~~~~~~~~~~~------~l~~~ 138 (435)
+|.+..+.|++.++..+...+..+++|.++||.-+| |. =.++....++..+..++.++-. .+.+.
T Consensus 289 L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~ 368 (466)
T KOG2532|consen 289 LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA 368 (466)
T ss_pred hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH
Confidence 588999999999999999999999999999987542 22 2234445555555555555321 11222
Q ss_pred HhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 139 RVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 139 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
-.+.|+..++.. .-..|. .+++-+..+++.+....+..+++|.+.+.+........||+.|++.+++.++..+..
T Consensus 369 ~~~~g~~~~Gf~----~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 369 IGLSGFNISGFY----KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF 443 (466)
T ss_pred HHHcccchhhhH----hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence 223333322222 222222 456678999999999999999999999999853233579999999998888876654
Q ss_pred cc
Q 043264 219 FF 220 (435)
Q Consensus 219 ~~ 220 (435)
.+
T Consensus 444 ~~ 445 (466)
T KOG2532|consen 444 LF 445 (466)
T ss_pred eE
Confidence 43
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=57.92 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=57.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHH
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGML 135 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l 135 (435)
++|.++.+++.+.+++|+.+|.+....+.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 8999999999999999999999999999999888999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=77.71 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 305 VVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 305 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.-++.+.++.|-+ .+..++.....+...+..++.|+++|.+|||..++.+.++..++.++.+..
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--------------- 128 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--------------- 128 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC---------------
Confidence 3456666778865 455677778889999999999999999999999999999999998877643
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
++....+....+.+++.+... +....++|..|.+.|..+.++..
T Consensus 129 ~~~~~~iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred CcHHHHHHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHH
Confidence 556667777888887765543 33455799999999988877654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-05 Score=72.55 Aligned_cols=143 Identities=11% Similarity=-0.049 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhcc-chhHHHHHHHHHHHHHHHHHhccc---------------------hhHHHHHH
Q 043264 82 TAYNSSLYIAGIFSALMAGRLTTSAG-RKGALIIGGIIYLIGVSLHALAVN---------------------MGMLFLGR 139 (435)
Q Consensus 82 ~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r 139 (435)
.+....+.+...+.+++.-++.+|+| ||++..++.++.+++.....+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34455555555677788889999999 578778998888888777765442 26677888
Q ss_pred hhhhccccccccccchhhhcccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 140 VFTGLGIGFINQTAPIYLVEMAPT--KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 140 ~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.+.|+..+.....-++++++..++ ++.|..+|+.+.+..+.+++..+..+.+.+..+ .+-.+++.+.++..++..+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-~~~~~~~~~~gv~~~~aa~~ 466 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-GGNLPAFVVGAVAAFVSGLL 466 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCeeHHHHHHHHHHHHHHH
Confidence 899999999999999999999985 455999999999999999999988888666655 34566888888888887776
Q ss_pred h-ccCCCCh
Q 043264 218 A-FFIPDTP 225 (435)
Q Consensus 218 ~-~~~pesp 225 (435)
. +.+|+++
T Consensus 467 ~~~~~~~~~ 475 (477)
T TIGR01301 467 ALILLPRPR 475 (477)
T ss_pred HHHhCCCCC
Confidence 4 4578765
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=66.85 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=120.1
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhHHHhhh-hccchhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHhhhhcccc
Q 043264 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTT-SAGRKGALIIGGIIYLIGVSLHAL---AVNMGMLFLGRVFTGLGIG 147 (435)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g 147 (435)
+-+|++..+..-+++....|..+|....|.+.. |.++|+...+++....++..+..+ ..+.+.+..+-++.|++.|
T Consensus 237 ~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 237 EVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 336999999999999999999999999998877 778888888888887777665444 4678899999999999999
Q ss_pred ccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC----C---CCcchHHHHhhhHHHHHHHHH
Q 043264 148 FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL----N---FKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~----~---~~~wr~~~~~~~~~~~~~~~~ 217 (435)
.......+...|...+++.|..+|.+.....++..++..+++.+.|.. + ..+|-..|.+-++..++...+
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887643 1 134666676666655554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.3e-06 Score=67.30 Aligned_cols=91 Identities=27% Similarity=0.332 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccc
Q 043264 327 IQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWG 406 (435)
Q Consensus 327 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (435)
...++..++.+..+++.||++||+.+..+.....++.+..... .+.+.......+.+.+.+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~- 69 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---------------SNITVLIIARFLQGFGAAFAL- 69 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHH-
Confidence 4567788899999999999999999988877777776655432 234455555666666655543
Q ss_pred cccceeecccCChhhhhhhhHHHHhhh
Q 043264 407 PLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 407 ~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
+....+..|.+|+++|+++.++.+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGI 96 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhH
Confidence 344577789999999999999987654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-06 Score=76.60 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=110.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc--chhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG--RKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
..+.+++|...--..+.+.+++.+.|.++||++ |-.....+++..++.+....+++++.++++-++..|++.+.....
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 445668888888888999999999999999999 433444567777777778888999999999999999888877776
Q ss_pred cchhhhcccCCC------CcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH
Q 043264 153 APIYLVEMAPTK------WRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII 217 (435)
Q Consensus 153 ~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~ 217 (435)
......+..+.+ --|...++...++++|..+||.+++.+.+..+ .+|...+.++..++-..+
T Consensus 382 l~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG---F~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 382 LIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG---FEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh---HHHHHHHHHHHHHHHHHH
Confidence 666666665433 34678899999999999999999999998654 888877777766665443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=77.69 Aligned_cols=95 Identities=24% Similarity=0.255 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHh
Q 043264 322 FPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGM 401 (435)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (435)
+++.+...++..++.++.|+++|++|||+.+.++.+...++.++.... .+.+...+.-++.|++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---------------~~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---------------PSWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHhccch
Confidence 789999999999999999999999999999999999999999888875 46778888899999988
Q ss_pred hhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 402 ALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 402 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
+...... -.|.+|..|++.||...+..+..
T Consensus 157 G~~~~~~-piy~sEiap~~~RG~l~~~~~l~ 186 (513)
T KOG0254|consen 157 GGASVLA-PVYISEIAPAHIRGTLVSLYQLF 186 (513)
T ss_pred hhhhhcc-hhhHhhcCChhhhHHHHHHHHHH
Confidence 8876555 47889999999999988876643
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0017 Score=61.97 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=81.1
Q ss_pred ccchhhHHHHHHHH-HHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc--c-------c---------------
Q 043264 77 YSWKLTAYNSSLYI-AGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA--V-------N--------------- 131 (435)
Q Consensus 77 s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~-------~--------------- 131 (435)
+++.+..+-....+ ...+......+++++++|++++-+....+.....+.++. | +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 55666666665555 445668889999999999999888777776666666553 1 1
Q ss_pred -------hhHHHHHHhhhhcccccccc-ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 132 -------MGMLFLGRVFTGLGIGFINQ-TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 132 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
.|.+.+.....-+-.....+ .-..+..|.++.++-.|..+++..+.++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222222 346678899999998999999999999999999988888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=5e-06 Score=82.61 Aligned_cols=141 Identities=13% Similarity=0.067 Sum_probs=99.4
Q ss_pred HHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHH
Q 043264 292 PTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMA 371 (435)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~ 371 (435)
..+.+...........+.+.+++++++.+.+++.+...++..++.++.+++.||.+||+.+.++.++.+++.+++++...
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 34444333344555566666789999999999999999999999999999999999999999999999999888776532
Q ss_pred hhccC-CC-------------Cccc-------------------cc--h-hhHHHHHHHHHHHHHhhhccccccceeecc
Q 043264 372 SESRS-HG-------------TSIF-------------------SK--R-SAFVALILRCFLGVGMALSWGPLPWILNCE 415 (435)
Q Consensus 372 ~~~~~-~~-------------~~~~-------------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 415 (435)
..... .+ .+.. .. . .....++.-++.|++.+.. .++...++.|
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~-~~~~~~~i~d 199 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI-FPLGISYIDD 199 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc-hhcCchhhhc
Confidence 11000 00 0000 00 1 2334456666676666555 3455688899
Q ss_pred cCChhhhhhhhHHHHhhh
Q 043264 416 ILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 416 ~~p~~~r~~~~~~~~~~~ 433 (435)
.+|++.|+.+.|+.+...
T Consensus 200 ~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIA 217 (633)
T ss_pred cCCccccHHHHHHHHHHH
Confidence 999999999999877653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=53.80 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=55.4
Q ss_pred HHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHH
Q 043264 293 TFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGC 357 (435)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 357 (435)
++..+.+.....-|.|.++++.|+++.+.+.+..+..+..+++.++.|.++||+++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34444456777788899999999999999999999999999999999999999999887765443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0005 Score=63.95 Aligned_cols=52 Identities=8% Similarity=-0.153 Sum_probs=37.7
Q ss_pred hhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 043264 141 FTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192 (435)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 192 (435)
+.=+-++--..+.-.+.-....+++++.+......+.+.|..++..+--.+.
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3334455666677777777888899999888888888888888776655544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.5e-05 Score=75.45 Aligned_cols=100 Identities=22% Similarity=0.137 Sum_probs=83.2
Q ss_pred HcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 313 SLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 313 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
....+.....+..++..++..+|.++.|.++||+|||+++..+..+..++.+..++. .+.+...+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---------------~~~~~~~~ 176 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---------------PNYWMFLI 176 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---------------CcHHHHHH
Confidence 345566667788899999999999999999999999999999999999988666654 56777788
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
.-++.|++.+.... +.+.+..|.++++.|+.+..+
T Consensus 177 ~Rfl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 177 FRFLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred HHHHHHhhccchhH-HhHhhheeecCcchhhHHHHH
Confidence 88888887766644 446788999999999999988
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00032 Score=65.45 Aligned_cols=108 Identities=18% Similarity=0.300 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cch------hHHHHHHhhhhccccccccccchhhhcccCCCC---cchhhhHHHHHH
Q 043264 110 GALIIGGIIYLIGVSLHALA---VNM------GMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKW---RGAIGTGFQIFF 177 (435)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~---~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~ 177 (435)
|++.++.++..+|.++..++ ++. +.+.++-++.++|.|+.-|....+.+|.+++++ |.+...++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999884443 222 678899999999999999999999999998663 456777889999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 178 WSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 178 ~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
++|..++..+..++.+. .+|.+.|.++++..++..+....
T Consensus 82 n~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999875 45999999998887776665433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00097 Score=63.05 Aligned_cols=105 Identities=12% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcch-HHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHH
Q 043264 322 FPILIIQSTIFFVCLLLTGYLIDRVGRR-IMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVG 400 (435)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (435)
-.......++..+|+.+..+.. .-++| +.+.+..+.-.+..-++.++ ......+.+ ..-.+.+...+..+++++.
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lc-n~~~~~~~p--~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLC-NYPQRSRLP--VFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHh-cCCccccCC--eeecccHHHHHHHHHHHHh
Confidence 4566778899999998665431 11222 13333333333322222222 111000000 0113456666667777777
Q ss_pred hhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 401 MALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 401 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
.|.. ..+...+.++..++++|..+-.+...
T Consensus 386 nGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~ 415 (437)
T TIGR00939 386 NGYL-GSLSMCLAPRQVDPHEREVAGALMVI 415 (437)
T ss_pred hhHH-HHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 6655 34556677888888888777665543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.4e-07 Score=86.04 Aligned_cols=136 Identities=18% Similarity=0.117 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH--h---ccc----hhHHHHHHhhhhcc-ccccccccchh
Q 043264 87 SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA--L---AVN----MGMLFLGRVFTGLG-IGFINQTAPIY 156 (435)
Q Consensus 87 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~----~~~l~~~r~l~G~~-~g~~~~~~~~~ 156 (435)
...+...++.+.+..+.||+|||+.++.+..+.+++.+..+ . .++ -...++.-.+...+ ..+..+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 33345556777777999999999999999888888877664 1 121 11122222222222 22345666688
Q ss_pred hhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHH-HHhccCCCCh
Q 043264 157 LVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMT-IIAFFIPDTP 225 (435)
Q Consensus 157 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp 225 (435)
..|.+|.+.|+++.++......++..+++.+...+.+..+ .+ ..+.+.+.+.++.. +..+++||+.
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~-~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG--GW-GVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc--cc-ccchhhHHHHHHHHhheeEEEeeCC
Confidence 8999999999999999988888888888777666554322 13 33444444444444 4467799985
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=63.23 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 299 GFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
..+.+..|.|.+.+++|++.++...+.....++..+| +..|.+.|++|.+.++.+|.+...++...+........
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---- 91 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---- 91 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc----
Confidence 4677889999999999999999988888888888875 88899999999999999999999999988877654110
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
+..+.|...+..++.+.+.+.. .........+.|| ++||++.|+.-.
T Consensus 92 ----~~~~~~~~~~~~~l~~~s~~~~-~ta~lvt~~~NFP-~~RG~vvgilk~ 138 (250)
T PF06813_consen 92 ----PSLPVWLMCLFLFLGGNSSCWF-NTASLVTCVRNFP-RSRGTVVGILKG 138 (250)
T ss_pred ----CccchHHHHHHHHHHcccHHHh-hhHHHHHHHHhCc-cccCceehhhhH
Confidence 1133444433333333322222 2222233357898 589999887644
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=49.85 Aligned_cols=45 Identities=9% Similarity=0.211 Sum_probs=41.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHH
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIY 119 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~ 119 (435)
|+++.++|.+.++..+...++.+++|.++||+|+++.++....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999998888765543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00074 Score=61.15 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 300 FNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 300 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
........|.+.+.++.+..++++.......+..++++..+++.+|+|+|+-++.+..++++++.++.-..
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--------- 99 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--------- 99 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh---------
Confidence 33445567777788999999999999999999999999999999999999999999999999999887543
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
...+....+..+++.+.|.+.--. -.+.++..+.|++..+.-+.+.+.++
T Consensus 100 ---~~~~y~~FL~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn 149 (422)
T COG0738 100 ---SSKSYGFFLVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFN 149 (422)
T ss_pred ---hhhhHHHHHHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhh
Confidence 223444555555666666554433 33567778888766666566555543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00085 Score=63.64 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=107.3
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhHH-HhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccccc
Q 043264 73 FCLFYSWKLTAYNSSLYIAGIFSALMAG-RLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQ 151 (435)
Q Consensus 73 ~~~~s~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 151 (435)
.+++++.+.+.+.+.......+++.+.. .+...+|-|+.+.+|+..-.+.....+++++.|+.+....+.++. +...|
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~p 349 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFP 349 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhH
Confidence 3589999999999999999999988887 778889999999999999999999999999999999998888775 67888
Q ss_pred ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 152 TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 152 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
...+.++.+.+++++|++.++.+...++..+++|.+-+.+..
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999888887766643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=60.92 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHH-HHcC----CCCCchHHHHHHHHHHHHHHHhhhHHHHhh-hcchHHHHHhHHHHHHHHHHHHHHHHhh
Q 043264 300 FNLNAVVGQLIV-TSLG----IRLKDVFPILIIQSTIFFVCLLLTGYLIDR-VGRRIMLIVGGCQIFICQVILAILMASE 373 (435)
Q Consensus 300 ~~~~~~~~~~~~-~~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 373 (435)
++.+-..+..|+ .+.+ ++.+++......+..-.-+..+++|+++|| +|+|+.+..+.+++.++.++++...
T Consensus 37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--- 113 (498)
T COG3104 37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--- 113 (498)
T ss_pred hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---
Confidence 444444444444 3344 888888888888888888888999999999 5999999999999999999887631
Q ss_pred ccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhh
Q 043264 374 SRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEV 421 (435)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 421 (435)
........+.+.+...+.+.. -|....+..|++|++.
T Consensus 114 ----------~~~~~gl~i~L~~I~iG~Gl~-K~NiS~llg~ly~~~D 150 (498)
T COG3104 114 ----------VSGPGGLYIGLALIIVGTGLF-KPNISSLLGELYPKDD 150 (498)
T ss_pred ----------cccccHHHHHHHHHHhccccc-cccHHHHHHHhcCCCC
Confidence 123445555666666666655 4455677899998753
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00081 Score=64.30 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=82.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhh----ccchhHHHHHHHHHHHHH-HHHHhccchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTS----AGRKGALIIGGIIYLIGV-SLHALAVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.|..+.+.+...+..+.+++.+++|+++|| ..+|......+.+..+.. +.....++......+-...+.+.+..
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 6788999999999999999999999999999 677777777666665555 44444433444433344444556666
Q ss_pred ccccchhhhcccCCCCcc-hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHh
Q 043264 150 NQTAPIYLVEMAPTKWRG-AIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSV 206 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~ 206 (435)
.+.+....++...++.|. ...+....+.+.+..+++.+-..... ..+.|...|..
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a--p~y~~~~~f~~ 440 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA--PRYGWGAVFYM 440 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC--cchhhhhHHHH
Confidence 777777777777554443 34444555555555444433222111 12457777633
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00056 Score=61.34 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=111.6
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhHHHhhhhcc--chhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhcccccc
Q 043264 72 GFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAG--RKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 72 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 149 (435)
+.+|.++.|.|-+.+...+++.+.+....+..||.. -+..+..++.+..-..++.+.++....+.++-.+-.+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 345899999999999999999999999999999988 788888888888888888889999999999999999998889
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSS 194 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 194 (435)
.+....++....|.++||.++|+......++-++||+++|.+..+
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 999999999999999999999999999999999999999888663
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.04 Score=50.62 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccc
Q 043264 328 QSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGP 407 (435)
Q Consensus 328 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (435)
..+...+|.+...+..++- +|.+.+...+-.+..-++.++...... ....+.++.+....++++..|-. +.
T Consensus 292 fN~~d~vG~~~a~~~~~~~--~r~l~i~v~lR~lfiPlF~~cn~~~~~------v~~~~~~~~~~l~~~lglsnGYl-ts 362 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWPD--PRKLTIPVLLRLLFIPLFLLCNYPPLP------VVFESDGWFIFLMSLLGLSNGYL-TS 362 (406)
T ss_pred hHHHHHhhhhhhhcccCCC--CceehHHHHHHHHHHHHHHHhccCCCC------ceecCchHHHHHHHHHHhccchH-hh
Confidence 6777888866655554333 232332222222222222222110000 01234556666666666665544 45
Q ss_pred ccceeecccCChhhhhhhhHHHH
Q 043264 408 LPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 408 ~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
+...+.++.+|++++..+-.+..
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~ 385 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMV 385 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHH
Confidence 66788899999887766655443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0049 Score=55.41 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=72.6
Q ss_pred HHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhH
Q 043264 309 LIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAF 388 (435)
Q Consensus 309 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.+.++.|++..+++.++....+...+...+.|.+.||+|||+.-+...++..++++.- ..++.+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k----------------~~~~~~ 122 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK----------------HSSNYP 122 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------------hccccH
Confidence 3446789999999999999999999999999999999999998887777777776543 225566
Q ss_pred HHHHHHHHHHHHhhhccccccceeeccc----CChhhhhhhhH
Q 043264 389 VALILRCFLGVGMALSWGPLPWILNCEI----LPIEVRSAGQG 427 (435)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~~ 427 (435)
.+++.-++.|+..+..++..-.-++.|. +|++..+...+
T Consensus 123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~ 165 (354)
T PF05631_consen 123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFS 165 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 6777777777766655443322233343 45554444443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0036 Score=53.42 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=35.4
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHH---hhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 164 KWRGAIGTGFQIFFWSGVAGASWINYFI---MSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 164 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
|+|+........+.++|.++....--.. .+.. ..+|++.+.+.+++.++-+++..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~-~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIAL-TNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887765432111 1111 24599999888877666555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.012 Score=46.67 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHH
Q 043264 317 RLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCF 396 (435)
Q Consensus 317 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (435)
++.....-..+......+.+++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~----------------~~~~~l~~~s~l 98 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY----------------PNSYTLYPASAL 98 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHH
Confidence 3344445566777778888888999999999999999888776655444321 346677888889
Q ss_pred HHHHhhhccccccceeecccCChhhhhhhhHHHHhh
Q 043264 397 LGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAI 432 (435)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 432 (435)
.|++.+..|.+.. .++.+...++.|++-.++...+
T Consensus 99 ~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~~ifw~i 133 (156)
T PF05978_consen 99 LGFGAALLWTAQG-TYLTSYSTEETIGRNTGIFWAI 133 (156)
T ss_pred HhhhhHHhhHhhh-HHHHHcCCHHHHhhHHHHHHHH
Confidence 9999998888764 5667888888898888775543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=50.92 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=105.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhccc----------------------
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAVN---------------------- 131 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~---------------------- 131 (435)
|.+...+.-..+.+.-...+..+.++.++|- +||-+++.++.++..++..+..++..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 6666777777777777778888999999995 69999999999988888655443311
Q ss_pred ---hhHHHHHHhhhhccccccccccchhhhcccC---CCC-c--chhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchH
Q 043264 132 ---MGMLFLGRVFTGLGIGFINQTAPIYLVEMAP---TKW-R--GAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRI 202 (435)
Q Consensus 132 ---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~-r--~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~ 202 (435)
...+..+.-+..+|.|+.-+....+-+|-++ +++ + ...+.++....++|..++..+-.+..+. .+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~---~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN---VGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc---cccee
Confidence 1356666777888999999999999999998 222 2 2567778888888988888777777665 45998
Q ss_pred HHHhhhHHHHHHHHH
Q 043264 203 AVSVSGFPATLMTII 217 (435)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (435)
-|.+..+...+..++
T Consensus 226 gf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 226 GFGIPTVLNALAILI 240 (571)
T ss_pred eccHHHHHHHHHHHH
Confidence 888877766665544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0089 Score=41.63 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHH
Q 043264 301 NLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAIL 369 (435)
Q Consensus 301 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~ 369 (435)
+...-.+|.+.++.++|..+.+++.+...++.++|.+...++.++..+++.+..+.+...+....+.+.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888889999999999999999999999999999999999888888888888888888777764
|
Note that many members are hypothetical proteins. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0038 Score=59.33 Aligned_cols=151 Identities=10% Similarity=0.106 Sum_probs=109.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHhhhhc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA----------VNMGMLFLGRVFTGL 144 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~ 144 (435)
|.++...+.+..+..++..+|..+.....-++.-|+++....++..+.++..... ++.+-.+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 4888889999988999999999999988888888999888887777666543221 122222333455666
Q ss_pred cccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCC-----CcchHHHHhhhHHHHHHHHHhc
Q 043264 145 GIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNF-----KRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 145 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~-----~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
..+..+.+...+++|..|+..-|...++.....++|..++..++..+.+..+. .+-.+..++..+..++.+....
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 66667777788899999999999999999999999999999999888876641 1223344555555555555555
Q ss_pred cCCCCh
Q 043264 220 FIPDTP 225 (435)
Q Consensus 220 ~~pesp 225 (435)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.46 Score=44.84 Aligned_cols=120 Identities=8% Similarity=-0.078 Sum_probs=84.2
Q ss_pred cccchhhHHHHHHHH-HHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc---------cch-------------
Q 043264 76 FYSWKLTAYNSSLYI-AGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA---------VNM------------- 132 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~~------------- 132 (435)
.++..+.++-+...+ +..+..++.+++.+++.|.+++-..+..+....+++++. +++
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 356777888888888 777899999999999999999998888887777777764 110
Q ss_pred ----------hHHHHHHhhhhcccccccc-ccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 043264 133 ----------GMLFLGRVFTGLGIGFINQ-TAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL 195 (435)
Q Consensus 133 ----------~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 195 (435)
|...+...+.=+-.+.... .-.....|.+..++-.|..++++.+.+++..++..+..++.+..
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 1111222221111111111 23345578888888889999999999999999998888887643
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.033 Score=51.53 Aligned_cols=149 Identities=13% Similarity=-0.003 Sum_probs=90.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc-hhHHHHHHHHHHHHHHHH-Hhc---cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR-KGALIIGGIIYLIGVSLH-ALA---VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~~~~~l~~~r~l~G~~~g~~ 149 (435)
|.+....|+.......++++++...|.+.||... |.++++......++.... .+. ...+.+...-.+.|++....
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 4455778999999999999999999999999764 555555555555553211 111 33456667777888888999
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhh-HHHHHHHHHhccCCC
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSG-FPATLMTIIAFFIPD 223 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~-~~~~~~~~~~~~~pe 223 (435)
.|....+-.|..-|..-+.-.|+......+=..+-..+-+...+..+..+|....-+.. ...++..+...+++|
T Consensus 377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 99999998888644444455555554444333333344444444333345555433333 233333344444443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00038 Score=62.89 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhh
Q 043264 323 PILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMA 402 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
.......++..+|+.+..+..-+..+++.+.+..+.-.+..-++.++-.....+..+ ..-++.+..++.++++++..|
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~--~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLP--VLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCC--CcccchHHHHHHHHHHHHccc
Confidence 345678899999999887643221133333333333332222222221100000000 012344556666777777665
Q ss_pred hccccccceeecccCChhhhhhhhHHHH
Q 043264 403 LSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 403 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
.. .++...+.++..++++|..+-.+..
T Consensus 264 yl-~tl~m~~~p~~v~~~e~e~aG~~~~ 290 (309)
T PF01733_consen 264 YL-STLAMMYAPKSVSPEERELAGSVMS 290 (309)
T ss_dssp ----HHHH--------------------
T ss_pred hh-hhceeeeCCCcCCHHHHHHHHHHHH
Confidence 55 4455678888888888777655443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0025 Score=60.05 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=78.3
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcc-hHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHH
Q 043264 314 LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGR-RIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALI 392 (435)
Q Consensus 314 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.+-+.+..|+..+...++..+++++.++-..|.+. |+.++.+.++++++.++.....+. +....+..++
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~----------~~~~~y~mL~ 135 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV----------PNGVKYLMLV 135 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHH
Confidence 66677778999999999999999999999999886 788889999999999888555431 3335666767
Q ss_pred HHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 393 LRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
+-++.|++.+.. ...-.|+++..-.+.|.++++..+.
T Consensus 136 ~R~l~Gvg~~n~--a~lR~Y~a~~s~~~dR~rA~a~~~~ 172 (488)
T KOG2325|consen 136 ARILTGVGVGNF--AVLRAYIADASTVEDRPRAFAATSG 172 (488)
T ss_pred HHHHcCcCcccH--HHHHHHHHhccCccchHHHHHHhhh
Confidence 667766665433 3445677776656677777665543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.029 Score=52.76 Aligned_cols=119 Identities=12% Similarity=0.031 Sum_probs=91.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHh---c---c----chhHHHHHHhhhhc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHAL---A---V----NMGMLFLGRVFTGL 144 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~----~~~~l~~~r~l~G~ 144 (435)
|+++..+|..-+...+....+.+...++.+|+|..|.=..+...-.....++.. . + +...++.+-.+.-+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877776654443333332 2 2 23445555555556
Q ss_pred cccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 145 GIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 145 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
|.=+...+..-++.|..|+++||...+......++-.++...++-.+.+
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6666777888889999999999999999988888888877766654433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.15 Score=49.74 Aligned_cols=117 Identities=13% Similarity=-0.003 Sum_probs=70.3
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHH--HH-HHHHHH----Hhccch-hHHHHHHhhhhccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGII--YL-IGVSLH----ALAVNM-GMLFLGRVFTGLGI 146 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~--~~-~~~~~~----~~~~~~-~~l~~~r~l~G~~~ 146 (435)
|-+..+.+.+.+++..|..+|+.+++++.++--|+.. .+-..+ .+ ++..+. .+...+ ..+...-++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999988744333322 221111 11 111111 111111 12233445677888
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
|+..|....+..+... ++-++..+-......+|.++|.++.+++.-
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 8888877776655332 223556677777788888888887766544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.23 Score=46.14 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=81.1
Q ss_pred cchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHH-----HHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 78 SWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIY-----LIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 78 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
..+..+...+|.+|-.++.--...+ |+ |+..+...+-. .+.....-+.++.|..++.-+..|+..|..+.-
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566677777777766653322111 33 44433332222 222223334588899999999999999999999
Q ss_pred cchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 043264 153 APIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMS 193 (435)
Q Consensus 153 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~ 193 (435)
....+.|-.++++|..+++..+.+-++|..++.+++-.+..
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887754
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.24 Score=49.61 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=73.1
Q ss_pred HHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhh-hcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchh
Q 043264 308 QLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDR-VGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRS 386 (435)
Q Consensus 308 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
.++.+.+|++...+...........-+..+++|++.|+ +|+++.+.++.++..++..++.+....... ....
T Consensus 12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~-------~~~~ 84 (654)
T TIGR00926 12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG-------HPLH 84 (654)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc-------cchH
Confidence 33345578888887777777777777888889999996 799999999998888888777653210000 0111
Q ss_pred hHHHHHHHHHHHHHhhhccccccceeecccCChhh---hhhhhHHHHh
Q 043264 387 AFVALILRCFLGVGMALSWGPLPWILNCEILPIEV---RSAGQGLSTA 431 (435)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~ 431 (435)
....++.+.+..+|.+..-+.+ .+...|.++++. |.....+.++
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~ 131 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYF 131 (654)
T ss_pred HHHHHHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHH
Confidence 2234455556666655554433 466678887543 4444444443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.035 Score=48.57 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhccc
Q 043264 82 TAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMA 161 (435)
Q Consensus 82 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (435)
|.+.-.-.+-..+--+......||+---.-+.+..++.+.+.++.+++++.++-+.+-.+..++.|.....-..+-+.+
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y- 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY- 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC-
Confidence 3444444555556666667778886554445566777888888999999999999999998888887776665554332
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHH-HHHHHHhccCCC
Q 043264 162 PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPA-TLMTIIAFFIPD 223 (435)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~-~~~~~~~~~~pe 223 (435)
.....+.+..+.+.++++|..-=..+.+..+ .+-|...++...+. +.....++.+++
T Consensus 144 ----~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~-~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 ----PSIVIAGWSSGTGGAGLIGASSYAFLTSWAN-LSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred ----CCceeccccCCCCcchhhhhhHHHHHhhhcC-CChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 2334455555666666666655455555333 45666666655444 444433444443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.072 Score=49.46 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhh----hcchHHHHH-hHH
Q 043264 283 PHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDR----VGRRIMLIV-GGC 357 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~-~~~ 357 (435)
.+++....+....++. ...-..|.+.+++..|.+....+......-+.+++..++.|..+|| +||||..+. +..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4444555555555554 5567778888899999998888888888888999999999999996 788776654 445
Q ss_pred HHHHHHHHHHHHHHhhccCCCC-cc-ccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhh-hhHHH
Q 043264 358 QIFICQVILAILMASESRSHGT-SI-FSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSA-GQGLS 429 (435)
Q Consensus 358 ~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~~~~ 429 (435)
...++++++....+...--.++ +. .........++.+.+.-+......+|. -++..|+...+++.+ +.+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f 184 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVF 184 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhH
Confidence 5556666665554333211111 00 001122233333444444444455565 466678887766666 55443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.5 Score=42.01 Aligned_cols=116 Identities=28% Similarity=0.275 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCC--CchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCC
Q 043264 302 LNAVVGQLIVTSLGIRL--KDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGT 379 (435)
Q Consensus 302 ~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 379 (435)
......+.+..+.+.+. ...+.......+...++.+..|++.||.|||+.+..+.....++.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 33445555555555444 356788888888888888999999999999977776665533332222221
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhccccccceeecccCCh-hhhhhhhHHHHh
Q 043264 380 SIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPI-EVRSAGQGLSTA 431 (435)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~ 431 (435)
.....+...+.....+.+.+.. .+....+..|.+|+ +.|+...+....
T Consensus 90 ---~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 90 ---PNVGLALLLILRLLQGLGGGGL-LPVASALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred ---ccchHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 1112334444444444444433 34446777888887 667777766554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=3.2 Score=39.53 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=79.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHH
Q 043264 316 IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRC 395 (435)
Q Consensus 316 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (435)
.++........+......+..++++.+.|+++.|..+.++..........+.. .+.+.....-+
T Consensus 47 i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~----------------~N~y~~yfssa 110 (461)
T KOG3098|consen 47 ISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF----------------PNSYYLYFSSA 110 (461)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----------------cchHHHHHHHH
Confidence 34444444578888999999999999999999999999988877776655543 35777888889
Q ss_pred HHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 396 FLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
+.|+|.+..|..-. .|..|...++.+.+..++..++.
T Consensus 111 llG~Gaallw~GqG-~ylt~~st~~tie~Nisi~Wai~ 147 (461)
T KOG3098|consen 111 LLGFGAALLWTGQG-GYLTSNSTRETIERNISIFWAIG 147 (461)
T ss_pred HhhhhHHheecccc-eehhhcCChhhHHHHHHHHHHHH
Confidence 99999998877654 67789999998888888776553
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.79 Score=42.40 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred ccchhhHHHHH-HHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHH---------hccchhHHHHHHhhhhccc
Q 043264 77 YSWKLTAYNSS-LYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHA---------LAVNMGMLFLGRVFTGLGI 146 (435)
Q Consensus 77 s~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~ 146 (435)
++...-.+..+ +.+...+|.+.+.++-++ +||...+. .++-.+..-+.. +-.+-+++++...+.|+..
T Consensus 280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~-v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsn 357 (406)
T KOG1479|consen 280 GDWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIP-VLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSN 357 (406)
T ss_pred chhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHH-HHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhcc
Confidence 45555566666 888888887777666655 33433332 222222222222 2356688889999999999
Q ss_pred cccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 043264 147 GFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYF 190 (435)
Q Consensus 147 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~ 190 (435)
|-.......+..+..+++++..+..+.......|...|..++..
T Consensus 358 GYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 358 GYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred chHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999888888888888888888776643
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=11 Score=33.99 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCC--C
Q 043264 87 SLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPT--K 164 (435)
Q Consensus 87 ~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~ 164 (435)
..++..+..+++.+.+..++|.|.++.++...+... +..=+-+.+..++..-...|++.+..+..--+|+++.-.. +
T Consensus 66 ~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~ 144 (390)
T KOG3097|consen 66 ALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYAN 144 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHH
Confidence 344555666777779999999999999887776553 2222447788999999999999999998888888766532 2
Q ss_pred Cc---------chhhhHHHHHHHHHHHHHHHHHH
Q 043264 165 WR---------GAIGTGFQIFFWSGVAGASWINY 189 (435)
Q Consensus 165 ~r---------~~~~~~~~~~~~~g~~~~~~l~~ 189 (435)
.| .+..+.+.+.+..+..+|..++.
T Consensus 145 ~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~iss 178 (390)
T KOG3097|consen 145 QRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISS 178 (390)
T ss_pred hhhhhccCceeeeehhHHHHHHHHHHHHHHHHHH
Confidence 34 34555555555555555544443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.10 E-value=3.1 Score=39.71 Aligned_cols=110 Identities=9% Similarity=0.124 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhhhccch--hHHHH--HHHHHHHHHHHHHhc---------cchhHHHHHHhhhhccccc
Q 043264 82 TAYNSSLYIAGIFSALMAGRLTTSAGRK--GALII--GGIIYLIGVSLHALA---------VNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 82 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~l~~--~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g~ 148 (435)
-....++.++-.+|..+..+.. .-++| ..... .=+++.-..++|..- ++-+..++..++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4555666666666666443321 11222 22222 222333333444332 3556777889999999999
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIM 192 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~ 192 (435)
....+..+..+..++++|..+..+...+..+|..+|..++..+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776553
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=90.08 E-value=5.8 Score=38.15 Aligned_cols=115 Identities=9% Similarity=0.006 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHHHHHH-HhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCc--------cccch----
Q 043264 319 KDVFPILIIQSTIFFVC-LLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTS--------IFSKR---- 385 (435)
Q Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~---- 385 (435)
+...++.+...+...+. .++.+++++|++|++..............++++......+..+++ ..+.+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 44556655555555555 788899999999999888777766666666665533111110000 00000
Q ss_pred ----hhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 386 ----SAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
..|...+.-...........+-+-|.+++|.+.+++-.+-+++....+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 112111111122222222222356888899999999888888876654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.12 Score=50.44 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=1.2
Q ss_pred HHHhhchhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhh
Q 043264 294 FQALTGFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASE 373 (435)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 373 (435)
+.+..........++.+-+++++++.++|.+.+..-++.++..++..++.+|-.|-+.+-.+.++++++.+++.+-....
T Consensus 13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 33333344445556666677999999999999999999999999999999998887888889999999888876643322
Q ss_pred ccCC----C---------Ccc------------------ccchh----hHHHHHHHHHHHHHhhhccccccceeecccCC
Q 043264 374 SRSH----G---------TSI------------------FSKRS----AFVALILRCFLGVGMALSWGPLPWILNCEILP 418 (435)
Q Consensus 374 ~~~~----~---------~~~------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 418 (435)
.... . ... ..... .+..++.-++.|+|.... .++..+|+-|.++
T Consensus 93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl-~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPL-YTLGITYIDDNVS 171 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCC-ccceeeeeccccc
Confidence 1100 0 000 00111 122333333444443333 3466789999999
Q ss_pred hhhhhhhhHHHHhh
Q 043264 419 IEVRSAGQGLSTAI 432 (435)
Q Consensus 419 ~~~r~~~~~~~~~~ 432 (435)
++.-+...|+.++.
T Consensus 172 ~~~splYiGi~~~~ 185 (539)
T PF03137_consen 172 KKNSPLYIGILYAM 185 (539)
T ss_dssp --------------
T ss_pred cccCccchhhhhHH
Confidence 99888888877654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.24 E-value=32 Score=29.69 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHH
Q 043264 328 QSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFIC 362 (435)
Q Consensus 328 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~ 362 (435)
..++..+..+.+-+++.|+..|++.+.+..+..+.
T Consensus 249 H~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 249 HALCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 34444444444446788888888777666555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 435 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-20 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 435 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 57/369 (15%), Positives = 112/369 (30%), Gaps = 130/369 (35%)
Query: 47 TKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAY---------NSSLYIAG----- 92
+K E ++KF VL + N Y + ++ + +YI
Sbjct: 73 SKQEEMVQKFVEEVL--RIN----------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 93 ----IFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIG- 147
+F+ RL + AL+ + V + G+ LG G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLID------GV---------LGSGK 163
Query: 148 --FINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVS 205
Y V+ F+IF W+N + + N
Sbjct: 164 TWVALDVCLSYKVQCKM---------DFKIF---------WLN---LKNCN--------- 193
Query: 206 VSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDM 265
+P ++++ Q L L Q+ + S ++ IK
Sbjct: 194 ------------------SPETVLEM---LQKL--LYQIDP-NWTSRSDHSSNIKLRIH- 228
Query: 266 RIASETPYKMLLERKYRPHLLFAIAL------PTFQALTGFNLNAVVGQLIVTSLGIRLK 319
+ + + LL+ K + L + L + A FNL+ ++++T+ R K
Sbjct: 229 --SIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNA---FNLSC---KILLTT---RFK 275
Query: 320 DVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIF-----ICQVI-LAILMASE 373
V L +T + L + ++L C+ + + + +E
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 374 SRSHGTSIF 382
S G + +
Sbjct: 336 SIRDGLATW 344
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.36 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.19 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.18 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.13 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.7 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.59 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=343.43 Aligned_cols=386 Identities=24% Similarity=0.376 Sum_probs=310.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
.+.+.++++++++.+++|||.++++.. +|.+.+++..+... ..+.++.+.+++.+++.+|.++|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~~~----------~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQNL----------SESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGGCC----------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCC----------CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999865 47777776433211 124567788999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHH------------------hccchhHHHHHHhhhhccccccccccchhhhccc
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHA------------------LAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMA 161 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 161 (435)
|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcchHHHHhhhHHHHHHHHHhccCCCChhhHHhcCCHHH
Q 043264 162 PTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN-----FKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQ 236 (435)
Q Consensus 162 ~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l~~~~~~~~ 236 (435)
|+++|++..++.+.+...|.++++.++.......+ ...||+.+.+..++.++..+..+++||||+|+..+++.|+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 99999999999999999999999999887765432 3568999999999988888888999999999999999999
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHcCC
Q 043264 237 ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGI 316 (435)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 316 (435)
+++.+++.+.++...++. .+.++..+++++ ....... ...++.........+.++.+......|.+.+.+..+.
T Consensus 236 a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAV-QEIKHSLDHGRK--TGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGA 309 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSC
T ss_pred HHHhHHHhcCCchhHHHH-HHHHHHHHhhhh--hhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCC
Confidence 999988876443211111 111111111111 1111111 2233445666666777788888899999999888888
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHH
Q 043264 317 RLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCF 396 (435)
Q Consensus 317 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (435)
+...........++..+++.++++++.||+|||+.+..+...+.++++.+..... .....+..++..++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 310 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-----------TQAPGIVALLSMLF 378 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH-----------TTCCHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh-----------cccchHHHHHHHHH
Confidence 8777777888889999999999999999999999999998888888877766543 33444555666667
Q ss_pred HHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 397 LGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
+..+++.++.|+.+.+.+|++|++.|+++.|+++++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 379 YVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 77777888888888999999999999999999988775
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=263.45 Aligned_cols=332 Identities=15% Similarity=0.148 Sum_probs=248.4
Q ss_pred HHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhh
Q 043264 25 ICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTT 104 (435)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d 104 (435)
....+++..+..+++....++. +|.+.+++ |+++.+.+++.+++.++..+++++.|+++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d 86 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGILMK 86 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444445557777777766644 36666666 899999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHH---HhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHH
Q 043264 105 SAGRKGALIIGGIIYLIGVSLH---ALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGV 181 (435)
Q Consensus 105 r~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 181 (435)
|+|||++++++.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.
T Consensus 87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hcCCCC----------------------cchHHHHhhhHHHHHHHHHhc--cCCCChhhHHhcCCHHH
Q 043264 182 AGASWINYFIM-SSLNFK----------------------RWRIAVSVSGFPATLMTIIAF--FIPDTPSSLIQRGKVQQ 236 (435)
Q Consensus 182 ~~~~~l~~~l~-~~~~~~----------------------~wr~~~~~~~~~~~~~~~~~~--~~pesp~~l~~~~~~~~ 236 (435)
.+++.+++.+. +..+.. +||+.|++.+++.++..+..+ ..||+++. +++.
T Consensus 167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~-- 241 (438)
T 3o7q_A 167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD-- 241 (438)
T ss_dssp HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC--
T ss_pred HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc--
Confidence 99999999988 433210 199999877766665554433 35665531 0000
Q ss_pred HHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-HHHc-
Q 043264 237 ALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLI-VTSL- 314 (435)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 314 (435)
+++++.+.+++++++++..+...+.. +...........+.|.+ +++.
T Consensus 242 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 242 ---------------------------AKQGSFSASLSRLARIRHWRWAVLAQ----FCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp ---------------------------SSTTSHHHHHHHHTTCSHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---------------------------ccccchhhhHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhccC
Confidence 00111123445555544433333222 22222355666788888 7764
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHH
Q 043264 315 GIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILR 394 (435)
Q Consensus 315 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (435)
|+++.+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... +..+ .....
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~ 354 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------------GGHV-GLIAL 354 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------------CHHH-HHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------------CCcH-HHHHH
Confidence 9999999999999999999999999999999999999988887777766555432 1222 23344
Q ss_pred HHHHHHhhhccccccceeecccCChhhhhhhhHHHH
Q 043264 395 CFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLST 430 (435)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 430 (435)
++.+++.+... |..+.+..|.+|++ ++++.++..
T Consensus 355 ~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 355 TLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH
Confidence 56666665554 45567778999976 888887765
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=270.67 Aligned_cols=359 Identities=16% Similarity=0.078 Sum_probs=258.2
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhH
Q 043264 20 GPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMA 99 (435)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~ 99 (435)
+..+.......++.+..+++....++. ...+ .+++ .+..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA------MPYL--------------VEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH------HHHT--------------TSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------------HHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666677777776665432 2222 3335 788999999999999999999999
Q ss_pred HHhhhhccchhHHHHHHHHHHHHHHHHHh----ccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHH
Q 043264 100 GRLTTSAGRKGALIIGGIIYLIGVSLHAL----AVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQI 175 (435)
Q Consensus 100 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 175 (435)
|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCc-chHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHH
Q 043264 176 FFWSGVAGASWINYFIMSSLNFKR-WRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSEN 253 (435)
Q Consensus 176 ~~~~g~~~~~~l~~~l~~~~~~~~-wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (435)
+.++|.+++|.+++.+.+. .+ ||+.|++.+++.++..+. .+++||+|+....+++.++ ++ +.+.
T Consensus 163 ~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~ 228 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KN-DYPD 228 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CC-C---
T ss_pred HHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cc-cccc
Confidence 9999999999999987764 45 999999988887766554 4668998864322111110 00 0000
Q ss_pred HHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHH
Q 043264 254 ELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIF 332 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 332 (435)
+. ++..+++...++...++.+++ +.++...+..+...........+.|.++++ .|++..+.+.......++.
T Consensus 229 ~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 229 DY---NEKAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp -------------CCTHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred cc---hhhhhcccccccchHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00 000000000000112333322 223333333344444466777888888876 7999999999999999999
Q ss_pred HHHHhhhHHHHhhh--cchHHHHHhHHHHH-HHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccc
Q 043264 333 FVCLLLTGYLIDRV--GRRIMLIVGGCQIF-ICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLP 409 (435)
Q Consensus 333 ~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (435)
+++.++.+++.||+ +||+.+..+..+.. ++.+++... +..+.+...+..++.+.+.+.... ..
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~-~~ 367 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVM-LI 367 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHH-HH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHH-HH
Confidence 99999999999999 99988877666555 443333221 222455555566666665554433 33
Q ss_pred ceeecccCChhhhhhhhHHHHhhhc
Q 043264 410 WILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 410 ~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..+..|.+|++.|+++.|+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHH
Confidence 5777899999999999999987654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=251.48 Aligned_cols=329 Identities=13% Similarity=0.115 Sum_probs=242.8
Q ss_pred HHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHhHHHhhhhccc
Q 043264 29 VASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGR 108 (435)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr 108 (435)
++++.+..+++.....+. .|.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPA--IADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhh--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334456666666666543 24555444 8999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 043264 109 KGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWIN 188 (435)
Q Consensus 109 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 188 (435)
|+++..+.++..++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.++
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG 144 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhh
Q 043264 189 YFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRI 267 (435)
Q Consensus 189 ~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (435)
+.+.+.. +||+.|.+.++..++..+. .+.+||+++.. + +++
T Consensus 145 ~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~ 186 (375)
T 2gfp_A 145 GLLDTMW---NWRACYLFLLVLCAGVTFSMARWMPETRPVD---A--------------------------------PRT 186 (375)
T ss_dssp HHSSCHH---HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---C--------------------------------CCC
T ss_pred HHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---c--------------------------------ccc
Confidence 9987753 5999999888887776663 45688876420 0 001
Q ss_pred hccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhh
Q 043264 268 ASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRV 346 (435)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 346 (435)
+.++++++.++++..+. ..+..+...........+.|.++++ .|.++.+.+.......++.+++.++.+++.||.
T Consensus 187 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNC----YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp CTTTCSTHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred cHHHHHHHHhcCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444444332222 2222233333355566777777655 788888899999999999999999999999999
Q ss_pred cchHHHHHhHHH-HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhh
Q 043264 347 GRRIMLIVGGCQ-IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAG 425 (435)
Q Consensus 347 g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 425 (435)
+++. ..+... ...+...+..... ...+.+...+..++.+++.+... +....+..|.+| ++|+++
T Consensus 263 ~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 263 STLM--WQSVICCLLAGLLMWIPDWF-----------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHHH--HHHHHHHHHTSSSSSHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTS-STTHHHHHTHHH-HHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhhh-----------ccccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhCC-cccchH
Confidence 8732 222222 2222221111110 12344555566667777776654 454677889998 899999
Q ss_pred hHHHHhhhc
Q 043264 426 QGLSTAISF 434 (435)
Q Consensus 426 ~~~~~~~~~ 434 (435)
.|+.+..+.
T Consensus 328 ~g~~~~~~~ 336 (375)
T 2gfp_A 328 GALVGGLQN 336 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=235.57 Aligned_cols=349 Identities=13% Similarity=0.038 Sum_probs=226.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhh-ccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTS-AGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQT 152 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 152 (435)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 58999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCCCC--cchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccC-CC----Ch
Q 043264 153 APIYLVEMAPTKW--RGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFI-PD----TP 225 (435)
Q Consensus 153 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pe----sp 225 (435)
..+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++. |+ ..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 9999999999988 667888899999999999999999998864 49999999877666655443321 11 11
Q ss_pred hhHHhcCCHHHHHHHHHH----------------H-hCCCcCcHHHHHHHHHH---HH-HhhhhccccHhhhhccCchhH
Q 043264 226 SSLIQRGKVQQALKSLNQ----------------V-RGTKFDSENELKYLIKY---NE-DMRIASETPYKMLLERKYRPH 284 (435)
Q Consensus 226 ~~l~~~~~~~~a~~~~~~----------------~-~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 284 (435)
+....+.+.++.++..++ . ...+.+........... .. ..+..+........+++.. .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 284 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV-S 284 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT-T
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH-H
Confidence 100111223333332222 0 11111111110000000 00 0000000000000111111 1
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHH-----HhHHH
Q 043264 285 LLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLI-----VGGCQ 358 (435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~ 358 (435)
.....+..............+.+.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..+
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 -YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp -HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 1111111111111233334455666654 5666677788888889999999999999999999986544 56666
Q ss_pred HHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhhc
Q 043264 359 IFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 359 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
.+++.+++.......... ...+.+......++.+.+.+.. .+..+.+..|.+|++.|+++.|+.+...+
T Consensus 364 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTS------GKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHTTTHHHHHHCCCC------TTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 666655555432211100 1234455556666666666554 34556788999999999999999887653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-24 Score=205.60 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=129.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHHHhhhhc-cchhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHhhhhcccccccccc
Q 043264 76 FYSWKLTAYNSSLYIAGIFSALMAGRLTTSA-GRKGALIIGGIIYLIGVSLHALAV-NMGMLFLGRVFTGLGIGFINQTA 153 (435)
Q Consensus 76 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 153 (435)
++..+.+++.+++.++..++++++|+++||+ |||+++.++.++..++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred chhhhcccCCCCcchhhhH---HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 154 PIYLVEMAPTKWRGAIGTG---FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 154 ~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
.+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 88999999999999999888754 599999998877666555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=209.65 Aligned_cols=305 Identities=11% Similarity=0.052 Sum_probs=185.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHH---HHHHhccch-hHHHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGV---SLHALAVNM-GMLFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~~ 150 (435)
|+++.+.|++.+.+.++..++++++|+++||+|||++++++..+..++. ..+.+++.. ..+...+++.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999887775532 212232221 123456667776666555
Q ss_pred cccchhhhcccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhccCCCChhhH
Q 043264 151 QTAPIYLVEMAPT--KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFFIPDTPSSL 228 (435)
Q Consensus 151 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~l 228 (435)
+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.||+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~- 193 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS- 193 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc-
Confidence 5545555555433 345667777777788899999999998876 359999988877765555555554433310
Q ss_pred HhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 043264 229 IQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQ 308 (435)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
+.+.++. .+ +++++....+++++++++..+...+ ..+.....+.....+.|
T Consensus 194 --~~~~~~~---------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 194 --SATVANA---------VG--------------ANHSAFSLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFA 244 (417)
T ss_dssp --SSCSSSS---------SS--------------SCCCCCCHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred --ccccccc---------cc--------------cccccccHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHH
Confidence 0000000 00 0000000112233443322222111 11111111233334466
Q ss_pred HHHHH-cC---CCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 043264 309 LIVTS-LG---IRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSK 384 (435)
Q Consensus 309 ~~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
.++.+ .+ .+....+....+..++.+++.++.+++.||+|||+.+..+..+.+++.+.+.+ .
T Consensus 245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------------~- 309 (417)
T 2cfq_A 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------A- 309 (417)
T ss_dssp HHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------------C-
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------------h-
Confidence 66544 22 12334466777778888999999999999999999988777766665444322 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHH
Q 043264 385 RSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLS 429 (435)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 429 (435)
.+.+..++...+.+.+.+.... ..+.+.+|.+|++.|+++.++.
T Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence 2233344444444444333222 2356789999999999998885
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=118.91 Aligned_cols=144 Identities=19% Similarity=0.106 Sum_probs=125.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhc--cchhHHHHHHHHHH-HHHHHHHhc--cchhHHHHHHhhhhccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSA--GRKGALIIGGIIYL-IGVSLHALA--VNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 148 (435)
+|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+.-++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988877776 666666666 3677788888999999888
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWS-GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
..+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. +|+..|++.++..++..+..++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 9999999999998864 4999998888777776665443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=121.13 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccchh
Q 043264 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAPIY 156 (435)
Q Consensus 77 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 156 (435)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999988888888888888888888888888888877777777889
Q ss_pred hhcccCCCCcchhhhH-HHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChh
Q 043264 157 LVEMAPTKWRGAIGTG-FQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPS 226 (435)
Q Consensus 157 i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~ 226 (435)
+.|.+|++.|+.+.+. ++....+|..++|.+++.+.+.. +++..|.+.+++.++..+. ....||.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 47888899999999999988753 4888888888777776655 344666553
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=107.81 Aligned_cols=141 Identities=10% Similarity=-0.057 Sum_probs=117.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999888887665544 888999999999999
Q ss_pred hhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhcc
Q 043264 155 IYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAFF 220 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~~ 220 (435)
++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+ +++..|.+.++..++..+..+.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 888888776 556899999999999988643 2777777766555544444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=111.65 Aligned_cols=141 Identities=12% Similarity=0.008 Sum_probs=113.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHH-----HHHHHHHHHHHHHHhcc---------chhHHHHHHh
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALI-----IGGIIYLIGVSLHALAV---------NMGMLFLGRV 140 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~ 140 (435)
+.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 445567788889999999999999999999999986655 67777777766666542 6777888889
Q ss_pred hhhccccccccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHhc
Q 043264 141 FTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIAF 219 (435)
Q Consensus 141 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~~ 219 (435)
+.|++.+...+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+. ++...|.+.++..++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877653 466677777766666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-10 Score=107.14 Aligned_cols=151 Identities=16% Similarity=0.053 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHhhhhcccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALA-----VNMGMLFLGRVFTGLGIGFI 149 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 149 (435)
+.+............+...++.++.+.+.||+|||+.++.+.....++.+..+.. ++...+...-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 4555666667777888889999999999999999999999888887776655443 11222222222222222234
Q ss_pred ccccchhhhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcC---CCCcchHHHHhhhHHHHHHHHH-hccCCCCh
Q 043264 150 NQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSL---NFKRWRIAVSVSGFPATLMTII-AFFIPDTP 225 (435)
Q Consensus 150 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp 225 (435)
.+....+.+|.+|.+.|+.+.++......+|..+++.+...+.+.. ...++...|++.++++++..+. .+++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999988888888877765553321 0123556777777777776655 46799985
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-08 Score=92.35 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=95.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCC
Q 043264 299 GFNLNAVVGQLIVTSLGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHG 378 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 378 (435)
.........|.+.++.|.++.+.++..+...++..++.++.|++.||+|||+.+..+.....++.++....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 85 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------- 85 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh---------
Confidence 34555666777778899999999999999999999999999999999999999999988888887776654
Q ss_pred CccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHhhh
Q 043264 379 TSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAIS 433 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 433 (435)
++.+...+..++.+.+.+... +....+..|.+|+++|+++.++.+...
T Consensus 86 ------~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 86 ------SSLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGI 133 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 345566666777777766553 344577889999999999999877653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=91.11 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHH-HHcC------CCCCchHHHHHHHHHHHHHHHhhhHHHHhhh-cchHHHHHhHHHHHHHHHHHHHHHH
Q 043264 300 FNLNAVVGQLIV-TSLG------IRLKDVFPILIIQSTIFFVCLLLTGYLIDRV-GRRIMLIVGGCQIFICQVILAILMA 371 (435)
Q Consensus 300 ~~~~~~~~~~~~-~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~ 371 (435)
++....+.+.++ ++.| ++..+.++..+...++..++.++.|+++||+ |||+.+..+..+.+++.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 445556666665 4578 9999999999999999999999999999999 99999999888888877666542
Q ss_pred hhccCCCCccccchhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHH
Q 043264 372 SESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGL 428 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 428 (435)
..+.+...+..++.+++.+... +....++.|.+|+++|+++.+.
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~ 149 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKA 149 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHH
Confidence 1145566666777777766654 3445778999999999766555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 435 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 45.4 bits (106), Expect = 9e-06
Identities = 44/358 (12%), Positives = 93/358 (25%), Gaps = 29/358 (8%)
Query: 77 YSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLF 136
+ L+ + + + ++ R LI+ + L + ++ ++F
Sbjct: 61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120
Query: 137 LGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQIFFWSGVAGASWINYFIMSSLN 196
+ G G +V K RG I + + G + M+ N
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 180
Query: 197 FKRWRIAVSVSGFPATLMTIIAFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSENELK 256
+ + + + + DTP S G E +
Sbjct: 181 DWHAALYM-PAFCAILVALFAFAMMRDTPQS-----------------CGLPPIEEYKND 222
Query: 257 YLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTSLGI 316
Y YNE + L + F L + + +
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF 282
Query: 317 RLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRS 376
L + LL G++ D+V R G + + + +
Sbjct: 283 ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW------ 336
Query: 377 HGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTAISF 434
+ + V +I +G + L + E+ P + G + +
Sbjct: 337 ----MNPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGY 389
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-34 Score=268.34 Aligned_cols=364 Identities=15% Similarity=0.067 Sum_probs=249.2
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhcccccccchHHHHhhccchhhhcccccccCcccccccchhhHHHHHHHHHHHHHHHh
Q 043264 19 TGPMLIICIAVASAGLMYGYDIGINGGITKAESFLKKFFPSVLRSQKNAKVVDGFCLFYSWKLTAYNSSLYIAGIFSALM 98 (435)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~ 98 (435)
++.+|.+...+.++.+..+++...++.+. ++.+++ |+|.+++|++.+++.+++.+++++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~---p~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~ 78 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAM---PYLVEQ------------------GFSRGDLGFALSGISIAYGFSKFI 78 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHH---HHTTSS------------------TTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666667777777766654322 222223 899999999999999999999999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHhc----cchhHHHHHHhhhhccccccccccchhhhcccCCCCcchhhhHHH
Q 043264 99 AGRLTTSAGRKGALIIGGIIYLIGVSLHALA----VNMGMLFLGRVFTGLGIGFINQTAPIYLVEMAPTKWRGAIGTGFQ 174 (435)
Q Consensus 99 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 174 (435)
+|+++||+|||+++.++.++.+++.++++++ ++++.+++.|++.|++.|...+....++.|++|+++|++++++.+
T Consensus 79 ~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 158 (447)
T d1pw4a_ 79 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 158 (447)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999998876 478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHH-hccCCCChhhHHhcCCHHHHHHHHHHHhCCCcCcHH
Q 043264 175 IFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTII-AFFIPDTPSSLIQRGKVQQALKSLNQVRGTKFDSEN 253 (435)
Q Consensus 175 ~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 253 (435)
.+..+|..+++.+++.+.... .+||+.+++.+++.++..+. ..+.+|+|+........++ + +..
T Consensus 159 ~~~~~g~~i~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~- 223 (447)
T d1pw4a_ 159 CAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------K-NDY- 223 (447)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------C-CC--
T ss_pred cccchhhhhhhhhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------h-hhc-
Confidence 999999999999888776654 25999988888777766555 4456776643211111110 0 000
Q ss_pred HHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHH
Q 043264 254 ELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVGQLIVTS-LGIRLKDVFPILIIQSTIF 332 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 332 (435)
.++..+..+++...++...+..+ +.+.++......+...........+.+.++.+ .+.+..+.+.......+..
T Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
T d1pw4a_ 224 -PDDYNEKAEQELTAKQIFMQYVL----PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298 (447)
T ss_dssp -------------CCTHHHHHHTS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred -ccchhhccccccchhhHHHHHHH----cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhh
Confidence 00000001111111111222222 22323333333333333455666777777754 7889899999999999999
Q ss_pred HHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHhhhcccccccee
Q 043264 333 FVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFSKRSAFVALILRCFLGVGMALSWGPLPWIL 412 (435)
Q Consensus 333 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (435)
+++.++.+++.||++|++..........+.......... ....+.+...+..++.+++.+.. .+....+
T Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 367 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----------NPAGNPTVDMICMIVIGFLIYGP-VMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----------CCTTCHHHHHHHHHHHHHHHTHH-HHHHHHH
T ss_pred hhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh----------cccccHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999876544443333332222222111 02344555555555655554443 3344677
Q ss_pred ecccCChhhhhhhhHHHHhhhc
Q 043264 413 NCEILPIEVRSAGQGLSTAISF 434 (435)
Q Consensus 413 ~~e~~p~~~r~~~~~~~~~~~~ 434 (435)
..|.+|++.|+++.|+.+++++
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~ 389 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGY 389 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHH
Confidence 8899999999999999877654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.3e-24 Score=197.89 Aligned_cols=306 Identities=11% Similarity=0.034 Sum_probs=197.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhH----HHHHHhhhhccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGM----LFLGRVFTGLGIGFIN 150 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~----l~~~r~l~G~~~g~~~ 150 (435)
|+|++++|++.+++.++..+++++.|+++||+|||++++++..+..++..+..+..+... .++.+.+.+.+.+...
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 899999999999999999999999999999999999999999999998888888765543 4555666666655555
Q ss_pred cccchhhhcccCC--CCcchhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHH-HHHHHHhccCCCChhh
Q 043264 151 QTAPIYLVEMAPT--KWRGAIGTGFQIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPA-TLMTIIAFFIPDTPSS 227 (435)
Q Consensus 151 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~-~~~~~~~~~~pesp~~ 227 (435)
........+..++ +++.+..+........+..+++.+++.+.+. +|+..+....... +...+..+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhcccccc
Confidence 5555444444432 3445567777888888999999999988774 3555555544444 4444445667776641
Q ss_pred HHhcCCHHHHHHHHHHHhCCCcCcHHHHHHHHHHHHHhhhhccccHhhhhccCchhHHHHHHHHHHHHHhhchhHHHHHH
Q 043264 228 LIQRGKVQQALKSLNQVRGTKFDSENELKYLIKYNEDMRIASETPYKMLLERKYRPHLLFAIALPTFQALTGFNLNAVVG 307 (435)
Q Consensus 228 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (435)
. ++.++ +.+++++.......+..+.+..+............ ........
T Consensus 195 ~---~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 243 (417)
T d1pv7a_ 195 A---TVANA------------------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQF 243 (417)
T ss_dssp S---CSSHH------------------------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred h---hhhhh------------------------hhhhcccccccccccccccccccchhhhhHHHHHH----HHhhhccc
Confidence 1 10000 00000111111122222222222222222222221 11222222
Q ss_pred HHHHHH----cCCCCCchHHHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHhHHHHHHHHHHHHHHHHhhccCCCCcccc
Q 043264 308 QLIVTS----LGIRLKDVFPILIIQSTIFFVCLLLTGYLIDRVGRRIMLIVGGCQIFICQVILAILMASESRSHGTSIFS 383 (435)
Q Consensus 308 ~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 383 (435)
+.+... .+.+....+.......++..++..+.+++.||.++|+.+..+..+.+++.+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------------- 308 (417)
T d1pv7a_ 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------- 308 (417)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc---------------
Confidence 222211 2223344566777888899999999999999999999999888888777666543
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccceeecccCChhhhhhhhHHHHh
Q 043264 384 KRSAFVALILRCFLGVGMALSWGPLPWILNCEILPIEVRSAGQGLSTA 431 (435)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 431 (435)
.++.+...+..++.+++.+.... ....+..|.+|++.|+++.|+.+.
T Consensus 309 ~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 355 (417)
T d1pv7a_ 309 ATSALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHH
Confidence 24556666677777777776644 445778999999999999997644
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.6e-13 Score=124.29 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=129.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHHHHHHHhccchhHHHHHHhhhhccccccccccc
Q 043264 75 LFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIGVSLHALAVNMGMLFLGRVFTGLGIGFINQTAP 154 (435)
Q Consensus 75 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 154 (435)
+.+....+...+...++..++..+.+++.||+|+|+.+.++.++..++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 55677788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCcchhhhHH-HHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh-ccCCCC
Q 043264 155 IYLVEMAPTKWRGAIGTGF-QIFFWSGVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA-FFIPDT 224 (435)
Q Consensus 155 ~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pes 224 (435)
+++.|.+|++.|+++.++. +....+|..++|.+.+.+.+..+ |+..|++.+++.++..+.. +.++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG---FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999975 56778999999999999998654 9999988887777666554 445443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=9.7e-10 Score=101.44 Aligned_cols=142 Identities=19% Similarity=0.073 Sum_probs=110.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhHHHhhhhccchhHHHHHHHHHHHH---HHHHHh--ccchhHHHHHHhhhhccccc
Q 043264 74 CLFYSWKLTAYNSSLYIAGIFSALMAGRLTTSAGRKGALIIGGIIYLIG---VSLHAL--AVNMGMLFLGRVFTGLGIGF 148 (435)
Q Consensus 74 ~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~---~~~~~~--~~~~~~l~~~r~l~G~~~g~ 148 (435)
.+.+..+.++..+...++..++.++.|++.||++||+..........+. ..+... ..+.+...+.-++.|++.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 359 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999876544433333222 222222 25667777888888998888
Q ss_pred cccccchhhhcccCCCCcchhhhHHHHHHHH-HHHHHHHHHHHHhhcCCCCcchHHHHhhhHHHHHHHHHh
Q 043264 149 INQTAPIYLVEMAPTKWRGAIGTGFQIFFWS-GVAGASWINYFIMSSLNFKRWRIAVSVSGFPATLMTIIA 218 (435)
Q Consensus 149 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~~~~wr~~~~~~~~~~~~~~~~~ 218 (435)
..+....+..|.+|++.|+.+.++.+....+ |.+++|.+.+.+.+..+ |+..|.+.+...++..+..
T Consensus 360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---WDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999998877666 56778999999988654 9988887776666655543
|