Citrus Sinensis ID: 043271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEEEEcccEEEEEEcccEEcccccccccccccccccccccEEEEccccccccccccccccccEEcccccccccccEEEEEEEEEcccccccccccccEEEcccccccccccccccccccccccccEEEEEEEEEcEEEEEccccccccccEEEEEccEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccEEccccccccccEEEEEcccccccccccEEEEccccHHHHHHHHHHHcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEccccEEEEEEcccEccccccHccccccccccccccEEEEccccccccccccHcccccEEccccccHHHcEEEEEEEEEEccccccccccccEEEEcccccccccccEEccccccccccccccEEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEEcccccccEEEEEEccccccccccccccHHHccHHHHHHHHHHccccccccEEEEEEEEcccccEEEccccccccEEEEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
cydpldpygnitvTFDIHQWTNDGYVARVTIQNyhqyrhvdqpgwkigwtwaDNEIILSMSGAfateqgncsdfkfqsphscekdpvivdlgpdaspqnmtdaccrggvlssytinpansfsFFEVTVgnlgmnasgyapqnltlwapgpgytcglledvdptvsleiggrrQVQVFRTWKStctystflanktpvccvslstfynpkvtpcpvcscgcrdadkttALCIsqdivhcsdhmcpvrvHWHVQNNYVGHWRVKVTVSNynykrnysnwnvvvqhpgfsqkataysfnssvlpsagfseKVALFWGISYYNEELLQAGENQVGSVTTQILLekdsesftlsngwalprriyfngencemplpdtfpmlpnaassslkp
Flexible Loop (DISEMBL)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKdsesftlsngwaLPRRIYFNGENCEMPLPDTfpmlpnaassslkp
Low Complexity Region (SEG)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP
Disordered region (IsUnstruct)
*****DPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQ********PVIVDL********MTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEM*******************
Disordered Region (DISOPRED)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDV**********RRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCR*********I*QDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPM***********
Disordered Region (DISEMBL)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPN********
Disordered Region (DISPRO)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPN********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q6Z4G8	446	COBRA-like protein 1 OS=O	yes	no	0.979	0.845	0.502	1e-116
Q75IW1	458	COBRA-like protein 2 OS=O	no	no	0.981	0.825	0.497	1e-115
Q60E70	457	COBRA-like protein 3 OS=O	no	no	0.989	0.833	0.486	1e-114
Q8L8Q7	441	COBRA-like protein 2 OS=A	yes	no	0.974	0.850	0.5	1e-114
Q9SRT7	452	COBRA-like protein 1 OS=A	no	no	0.976	0.831	0.491	1e-113
Q94KT8	456	Protein COBRA OS=Arabidop	no	no	0.981	0.828	0.471	1e-112
Q9LFW3	431	COBRA-like protein 4 OS=A	no	no	0.976	0.872	0.446	1e-107
Q6Z4G7	451	COBRA-like protein 6 OS=O	no	no	0.971	0.829	0.447	1e-105
Q10JL1	468	COBRA-like protein 5 OS=O	no	no	0.976	0.803	0.432	1e-102
A2XHZ9	468	COBRA-like protein 5 OS=O	N/A	no	0.976	0.803	0.432	1e-102

>sp|Q6Z4G8|COBL1_ORYSJ COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/402 (50%), Positives = 263/402 (65%), Gaps = 25/402 (6%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +D+ QWT DGYVA V++ NY QYRH+  PGWK+GW WA  EII +M+
Sbjct: 29  YDPLDPNGNITIKWDVLQWTPDGYVAVVSLYNYQQYRHIQSPGWKLGWVWAKKEIIWAMN 88

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
           G  ATEQG+CS FK   PH C+KDP IVDL P  +P NM  A CC+GGVL+S+  +PAN+
Sbjct: 89  GGQATEQGDCSKFKSNIPHCCKKDPEIVDLLP-GTPYNMQIANCCKGGVLNSWAQDPANA 147

Query: 121 FSFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
            + F+V+VG  G  N +   P+N TL +PGPGYTCG  + V PT      GRR  Q   T
Sbjct: 148 IASFQVSVGQAGTTNKTVRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQAHMT 207

Query: 180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------ 233
           W  TCTYS  +A ++P CCVSLS+FYN  +  CP CSCGC++    +  C+  +      
Sbjct: 208 WNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNNKPGS--CVEGNSPYLAS 265

Query: 234 ------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQ 281
                       +V C+ HMCP+RVHWHV+ NY  +WRVK+TV+N+NY+ NYS WN+V Q
Sbjct: 266 VVNTHNKDSLTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQ 325

Query: 282 HPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKD 341
           HP F    T +SFN   L   G     A+ WGI YYN+ L+ AG +  G+V +++L +KD
Sbjct: 326 HPSFDNLTTIFSFNYKSLNPYGVINDTAMLWGIKYYNDLLMTAGPD--GNVQSELLFKKD 383

Query: 342 SESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSL 383
            +SFT   GWA PRR+YFNG+NC MP PD +P LPNA++  +
Sbjct: 384 PKSFTFEKGWAFPRRVYFNGDNCVMPPPDAYPWLPNASTRVM 425

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75IW1|COBL2_ORYSJ COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/404 (49%), Positives = 265/404 (65%), Gaps = 26/404 (6%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +DI QWT DGYVA VTI N+ +YRH+  PGW +GW WA  EII SM+
Sbjct: 30  YDPLDPNGNITIKWDITQWTPDGYVAVVTIYNFQKYRHIQAPGWSLGWAWAKKEIIWSMA 89

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
           G  ATEQG+CS FK   PH C++DP +VDL P A P NM    CC+GGVL+S+  +P N+
Sbjct: 90  GGQATEQGDCSAFKANIPHCCKRDPRVVDLVPGA-PYNMQFGNCCKGGVLTSWVQDPLNA 148

Query: 121 FSFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVD-PTVSLEIGGRRQVQVFR 178
            + F++TVG+ G  N +  AP+N TL APGPGY+CGL ++V  PT  + + GRR  Q   
Sbjct: 149 VASFQITVGHSGTSNKTVKAPKNFTLKAPGPGYSCGLAQEVKPPTRFISLDGRRTTQAHV 208

Query: 179 TWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD----- 233
           TW  TCTYS F+A + P CCVSLS+FYN  +  CP C+CGC+  +K    C+  +     
Sbjct: 209 TWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQ--NKKPGSCVEGNSPYLA 266

Query: 234 -------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVV 280
                        +V C+ HMCP+RVHWHV+ NY  +WRVKVT++N+NY+ NYS WN+VV
Sbjct: 267 SVVNGPGKGSLTPLVQCTPHMCPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWNLVV 326

Query: 281 QHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEK 340
           QHP F   +T +SFN   L   G     A+ WG+ YYN+ L+ AG +  G+V +++L  K
Sbjct: 327 QHPNFENVSTVFSFNYKSLNPYGVINDTAMMWGVKYYNDLLMVAGPD--GNVQSELLFRK 384

Query: 341 DSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLK 384
           D  +FT   GWA PRRIYFNGE+C MP PD +P LP +++   +
Sbjct: 385 DRSTFTFDKGWAFPRRIYFNGESCVMPSPDLYPWLPPSSTPRFR 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60E70|COBL3_ORYSJ COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/405 (48%), Positives = 263/405 (64%), Gaps = 24/405 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YD LDP GNIT+ +D+  WT DGYVA VT+ NY Q+RH+  PGW++GWTWA  E+I SM 
Sbjct: 37  YDALDPNGNITIKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMV 96

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
           GA  TEQG+CS FK  +PH C+KDP +VDL P  +P NM  A CC+ GV++++  +P+N+
Sbjct: 97  GAQTTEQGDCSKFKGGTPHCCKKDPTVVDLLP-GTPYNMQIANCCKAGVINTFNQDPSNA 155

Query: 121 FSFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
            S F+++VG  G  N +   P+N TL APGPGYTCG    V PT      GRR  Q   T
Sbjct: 156 ASSFQISVGLAGTTNKTVKLPKNFTLKAPGPGYTCGRAMIVRPTKFFTGDGRRATQALMT 215

Query: 180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCIS-------- 231
           W  TCTYS FLA KTP CCVSLS+FYN  +  CP CSCGC++   +   C++        
Sbjct: 216 WNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQS 275

Query: 232 ----------QDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQ 281
                     Q +V C+ HMCP+R+HWHV+ NY  +WRVK+T++N+NY+ NY+ WN+V Q
Sbjct: 276 AIDGPGKWTGQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQ 335

Query: 282 HPGFSQKATAYSFNSSVL-PSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEK 340
           HP F+     +SFN   L P        A+FWG+ +YN+ L+QAG   +G+  +++LL K
Sbjct: 336 HPNFNNITQLFSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGP--LGNAQSELLLRK 393

Query: 341 DSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP 385
           DS+ FT   GWA P R+YFNG+NC MP PD +P LPNA+  + +P
Sbjct: 394 DSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPNASPLTKQP 438

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/394 (50%), Positives = 253/394 (64%), Gaps = 19/394 (4%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YD LDPYGNIT+ +DI  WT DGYVA VTI N+ QYRH++ PGW++GW+W   E+I SM 
Sbjct: 29  YDALDPYGNITIKWDIMSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMV 88

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           G  ATEQG+CS FK   PH C+K P IVDL P          CCRGGV+S++  +PA + 
Sbjct: 89  GGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAI 148

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+++VG  G  N +  AP+N+TL APGPGYTCG  + V P+  +    RR+ Q   TW
Sbjct: 149 SSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQSLLTW 208

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDI------ 234
             TCTYS FLA KTP CCVSLS FYN  + PCP CSCGC+++ +    C+   I      
Sbjct: 209 NITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNSSQ-AGTCVDPKIASVVPA 267

Query: 235 ---------VHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGF 285
                    + C+ HMCP+RVHWHV+ +Y  +WRVKV ++N+NY  NYS WN+VVQHP F
Sbjct: 268 LGKNNLEPLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNF 327

Query: 286 SQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESF 345
                 +SFN   L         A+ WGI +YN+ L QAG   VG+V +++L +K+   F
Sbjct: 328 DNLTKLFSFNYKPLNPYLNINDTAMLWGIKFYNDFLSQAGP--VGNVQSELLFQKNPLEF 385

Query: 346 TLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAA 379
           T   GWA PRRIYFNG+NC MP PD++P LPNA+
Sbjct: 386 TFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNAS 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/399 (49%), Positives = 248/399 (62%), Gaps = 23/399 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNITV +DI  WT DGYVA VT+ N+ QYRH+  PGW +GW+WA  E+I  M+
Sbjct: 34  YDPLDPSGNITVKWDIITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMN 93

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           G   TEQG+CS FK   PH C+K P +VDL P +        CCRGGVL+S+  +PA + 
Sbjct: 94  GGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATAV 153

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F++TVG  G  N +   P+N TL APGPGYTC   + V PT  +    RR  Q   TW
Sbjct: 154 SAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQALMTW 213

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------- 233
             TCTYS FLA KTP CCVSLS+FYN  +  CP CSCGCR+  +    C+          
Sbjct: 214 NVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNTSQ-PGNCVDPKGPRIASV 272

Query: 234 ------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQ 281
                       +V C+ HMCPVR+HWHV+ NY  +WRVKVT++N+NY  NYS WN+VVQ
Sbjct: 273 IPNPGKNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQ 332

Query: 282 HPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKD 341
           HP F      +SFN   L          + WGI +YN+ L+QAG    G+V +++L +K+
Sbjct: 333 HPNFDNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGP--FGNVQSELLFQKE 390

Query: 342 SESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAAS 380
           + +FT   GWA PRRIYFNG+NC MP PD++P LPN  S
Sbjct: 391 ASAFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNTGS 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/403 (47%), Positives = 253/403 (62%), Gaps = 25/403 (6%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YD LDP GNIT+ +D+  WT DGYVA VT+ N+ +YRH+  PGW +GW WA  E+I SM 
Sbjct: 37  YDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMV 96

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA  TEQG+CS +K   PH C+KDP +VDL P          CC+GGV++S+  +PA + 
Sbjct: 97  GAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAA 156

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+++VG  G  N +   P+N TL  PGPGYTCG  + V PT  +    RR  Q   TW
Sbjct: 157 SSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMTW 216

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------- 233
             TCTYS FLA +TP CCVSLS+FYN  +  CP C+CGC++    +  C+  D       
Sbjct: 217 NITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASV 276

Query: 234 -------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVV 280
                        +V C+ HMCP+RVHWHV+ NY  +WRVK+T++N+NY+ NY+ WN+V 
Sbjct: 277 VSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWNLVA 336

Query: 281 QHPGFSQKATAYSFN-SSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLE 339
           QHP        +SFN  S+ P AG ++  A+ WG+ +YN+ L +AG   +G+V ++IL  
Sbjct: 337 QHPNLDNITQIFSFNYKSLTPYAGLND-TAMLWGVKFYNDFLSEAGP--LGNVQSEILFR 393

Query: 340 KDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSS 382
           KD  +FT   GWA PRRIYFNG+NC MP PD++P LPN  S S
Sbjct: 394 KDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRS 436

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFW3|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/401 (44%), Positives = 247/401 (61%), Gaps = 25/401 (6%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +DI  WT DGYVA VT+ N+  YRH+  PGW +GWTWA  E+I SM 
Sbjct: 21  YDPLDPSGNITIKWDIMSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMV 80

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA  TEQG+CS FK   PH C+K P +VDL P          CC+GGV+ ++  +P+ + 
Sbjct: 81  GAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAV 140

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+V+ G  G  N +   P+N TL  PGPGYTCG  + V  TV L    RR+ Q   TW
Sbjct: 141 SQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTW 200

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------- 233
             TCTYS FLA K P CCVS S+FYN  +TPCP C+CGC +       C+  D       
Sbjct: 201 NVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCENKKS----CVKADSKILTKK 256

Query: 234 -----------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQH 282
                      ++ C+ HMCPVRVHWHV+ NY  +WRVK+ ++N+NY+ N++ W + +QH
Sbjct: 257 GLNTPKKDNTPLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQH 316

Query: 283 PGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDS 342
           P  +     +SF+   +   G      +F+G  +YN+ L++AG +  G+V +++LL+KD 
Sbjct: 317 PNLNNVTQVFSFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPS--GNVQSEVLLQKDQ 374

Query: 343 ESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSL 383
           ++FT   GWA PR++YFNG+ C +P PD++P LPN+A  + 
Sbjct: 375 KTFTFKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSAQGNF 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z4G7|COBL6_ORYSJ COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/407 (44%), Positives = 242/407 (59%), Gaps = 33/407 (8%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +D+  WT DGYVA VTI NY  YR +  PGW +GWTWA  E+I SM 
Sbjct: 22  YDPLDPNGNITIKWDVMSWTPDGYVAMVTINNYQTYRQIMAPGWTVGWTWARQEVIWSMV 81

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA AT+QG+CS FK   PH C + P +VDL P          CCRGGVL +Y   P+ + 
Sbjct: 82  GAQATDQGDCSRFKANLPHCCRRTPAVVDLLPGVPYNQQIANCCRGGVLPAYGQAPSAAA 141

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           + F+V+VG  G  N +   P+N TL  PGPGYTCG    V  TV L    RR+ Q   TW
Sbjct: 142 AAFQVSVGQAGTTNRTVRLPRNFTLLGPGPGYTCGRARVVPSTVFLTADRRRKTQALMTW 201

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGC----------RDADKTTALCI 230
             TCTYS  LA+K P CCVS S+FYN  + PC  C+CGC          RD  +      
Sbjct: 202 NVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGCDAHKPCVRSERDGKRLAVTGK 261

Query: 231 SQD--------------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYK 270
             D                    ++ C+ HMCPVRVHWHV+ NY  +WR K+T+ N+NY+
Sbjct: 262 KHDANANAHGRGNGVAAAAMAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYR 321

Query: 271 RNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVG 330
            NY+ W +V QHP        +SF+   + S G     A+F+G+ Y+N++L++AG +  G
Sbjct: 322 MNYTGWTLVAQHPNLDNITEVFSFDYKPVVSYGSINDTAMFYGLKYFNDQLMEAGPH--G 379

Query: 331 SVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPN 377
           +V +++L+ KD+ +FT   GWA PR++YFNG+ C+MP PD++P LPN
Sbjct: 380 NVQSEVLMRKDARTFTFRQGWAFPRKVYFNGDECQMPPPDSYPYLPN 426

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10JL1|COBL5_ORYSJ COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/425 (43%), Positives = 244/425 (57%), Gaps = 49/425 (11%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +D+  WT DGYVA VT+ NY  YR +  PGW +GW+WA  E+I S+ 
Sbjct: 23  YDPLDPKGNITIKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIV 82

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA ATEQG+CS FK   PHSC++ P IVDL P          CC+ GV+S+Y  +PA S 
Sbjct: 83  GAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSV 142

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+V+VG  G  N +   P N TL  PGPGYTCG    V  TV L    RR+ Q   TW
Sbjct: 143 SAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTW 202

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGC---------------RDADKT 225
             TCTYS  LA++ P CCVS S+FYN  + PC  C+CGC               R  D  
Sbjct: 203 TVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGR 262

Query: 226 TAL-------------CISQD------------------IVHCSDHMCPVRVHWHVQNNY 254
           +               CI  D                  ++ C+ HMCP+RVHWHV+ NY
Sbjct: 263 SRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNY 322

Query: 255 VGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGI 314
             +WR K+ ++N+NY+ NY+ W +V QHP  +     +SF    L   G      +F+G+
Sbjct: 323 KDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGL 382

Query: 315 SYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPM 374
            +YN+ L++AG    G+V +++L+ KD  +FT S GWA PR+IYFNG+ C+MP PD++P 
Sbjct: 383 KFYNDLLMEAGP--FGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPY 440

Query: 375 LPNAA 379
           LPN+A
Sbjct: 441 LPNSA 445

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XHZ9|COBL5_ORYSI COBRA-like protein 5 OS=Oryza sativa subsp. indica GN=BC1 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/425 (43%), Positives = 244/425 (57%), Gaps = 49/425 (11%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +D+  WT DGYVA VT+ NY  YR +  PGW +GW+WA  E+I S+ 
Sbjct: 23  YDPLDPKGNITIKWDVISWTPDGYVAMVTMSNYQMYRQILAPGWTVGWSWAKKEVIWSIV 82

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA ATEQG+CS FK   PHSC++ P IVDL P          CC+ GV+S+Y  +PA S 
Sbjct: 83  GAQATEQGDCSKFKGGIPHSCKRTPAIVDLLPGVPYNQQIANCCKAGVVSAYGQDPAGSV 142

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+V+VG  G  N +   P N TL  PGPGYTCG    V  TV L    RR+ Q   TW
Sbjct: 143 SAFQVSVGLAGTTNKTVKLPTNFTLAGPGPGYTCGPATIVPSTVYLTPDRRRRTQALMTW 202

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGC---------------RDADKT 225
             TCTYS  LA++ P CCVS S+FYN  + PC  C+CGC               R  D  
Sbjct: 203 TVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGR 262

Query: 226 TAL-------------CISQD------------------IVHCSDHMCPVRVHWHVQNNY 254
           +               CI  D                  ++ C+ HMCP+RVHWHV+ NY
Sbjct: 263 SRRNSGGGGGHSGGTECIMGDSKRALSAGVNTPRKDGAPLLQCTSHMCPIRVHWHVKLNY 322

Query: 255 VGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGI 314
             +WR K+ ++N+NY+ NY+ W +V QHP  +     +SF    L   G      +F+G+
Sbjct: 323 KDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTEVFSFQYKPLLPYGNINDTGMFYGL 382

Query: 315 SYYNEELLQAGENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPM 374
            +YN+ L++AG    G+V +++L+ KD  +FT S GWA PR+IYFNG+ C+MP PD++P 
Sbjct: 383 KFYNDLLMEAGP--FGNVQSEVLMRKDYNTFTFSQGWAFPRKIYFNGDECKMPPPDSYPY 440

Query: 375 LPNAA 379
           LPN+A
Sbjct: 441 LPNSA 445

Involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. May act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
359474889	453	PREDICTED: COBRA-like protein 2-like [Vi	0.989	0.841	0.685	1e-168
255576747	430	Protein COBRA precursor, putative [Ricin	1.0	0.895	0.664	1e-161
224078050	415	predicted protein [Populus trichocarpa]	1.0	0.927	0.650	1e-158
357467477	446	COBRA-like protein [Medicago truncatula]	0.994	0.858	0.637	1e-151
449454343	426	PREDICTED: COBRA-like protein 2-like [Cu	0.981	0.887	0.639	1e-144
356517868	577	PREDICTED: COBRA-like protein 2-like [Gl	0.987	0.658	0.652	1e-141
388515389	448	unknown [Lotus japonicus]	0.976	0.839	0.513	1e-116
357115193	456	PREDICTED: COBRA-like protein 3-like [Br	0.992	0.837	0.497	1e-116
242046228	458	hypothetical protein SORBIDRAFT_02g03872	0.974	0.818	0.502	1e-116
224077744	453	predicted protein [Populus trichocarpa]	0.987	0.838	0.496	1e-115

>gi|359474889|ref|XP_002276626.2| PREDICTED: COBRA-like protein 2-like [Vitis vinifera]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 270/394 (68%), Positives = 326/394 (82%), Gaps = 13/394 (3%)

Query: 1   CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSM 60
           CYDPLDP GNIT+TFD H+WT+DGYVARVTIQNY+QYRHV++ GWK+GWTWA +E+I SM
Sbjct: 36  CYDPLDPNGNITITFDTHKWTDDGYVARVTIQNYYQYRHVEKQGWKLGWTWAKDEVIWSM 95

Query: 61  SGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANS 120
           SGAFAT+QGNCS F  Q+PHSC K+PVIVDL P A+P+NMT+ CC GG+LS++ I P+NS
Sbjct: 96  SGAFATQQGNCSSFIVQTPHSCLKNPVIVDLEPTAAPENMTEDCCHGGILSAWAIIPSNS 155

Query: 121 FSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           FS FE+ VGNL  N  G  P NLTL APGPGYTC  +ED DPTVSL IGGRR++QVFRTW
Sbjct: 156 FSSFEIMVGNLEGNTHGNKPLNLTLMAPGPGYTCSPIEDTDPTVSLVIGGRREIQVFRTW 215

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQ-------- 232
           KSTCTYSTFL+NK PVCCVSLSTFY+P +T CP CSCGCRDA+ +T  CI +        
Sbjct: 216 KSTCTYSTFLSNKVPVCCVSLSTFYSPTITTCPQCSCGCRDANPSTDSCIREGSSLSQLS 275

Query: 233 -----DIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQ 287
                DIV C+DHMCP+RVHWHV+NNY+ HWRVK+T+SNYN  +NYS+WN++VQHPGFSQ
Sbjct: 276 SSGKLDIVQCTDHMCPIRVHWHVKNNYMSHWRVKLTISNYNLAKNYSDWNILVQHPGFSQ 335

Query: 288 KATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTL 347
             T YSFNS+ LP+ GF++++ALFWG+++YN ELL A + ++GSVTT+ILL KDS SFTL
Sbjct: 336 NTTTYSFNSTALPTVGFADEIALFWGVTFYNNELLHADDKKLGSVTTEILLGKDSNSFTL 395

Query: 348 SNGWALPRRIYFNGENCEMPLPDTFPMLPNAASS 381
           + GWA PRRIYFNGENCEMPLPDT+PMLPN +S+
Sbjct: 396 NGGWAFPRRIYFNGENCEMPLPDTYPMLPNGSST 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576747|ref|XP_002529261.1| Protein COBRA precursor, putative [Ricinus communis] gi|223531297|gb|EEF33139.1| Protein COBRA precursor, putative [Ricinus communis]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/397 (66%), Positives = 318/397 (80%), Gaps = 12/397 (3%)

Query: 1   CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSM 60
           CYDPLDP GNI VTFDIH+WT DGYVARVTIQNY+QYRH+D+PGW +GW W + E+I SM
Sbjct: 11  CYDPLDPNGNIAVTFDIHEWTTDGYVARVTIQNYYQYRHIDKPGWSLGWEWTNKEVIWSM 70

Query: 61  SGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANS 120
           SGAFA  QG+C+ FKF+ PHSC+ +PVI DL P+  P + ++ CCRGGVL+++ I+P+NS
Sbjct: 71  SGAFAILQGDCASFKFEKPHSCQPNPVIADLLPETLPASRSEDCCRGGVLAAWAIDPSNS 130

Query: 121 FSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           FS FE+ VGNL +N++   P NLTL APGPGYTC  + + +PT S EIGGRR+VQV+RTW
Sbjct: 131 FSSFEMKVGNLNINSTVSPPANLTLLAPGPGYTCIPVLETEPTQSSEIGGRRKVQVYRTW 190

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQ-------- 232
           KS CTYS+FLANK PVCCVSLSTFYNP VT CP CSCGCR+  + +  CI +        
Sbjct: 191 KSKCTYSSFLANKKPVCCVSLSTFYNPTVTTCPECSCGCRETGQNSVPCIREDSSSSLSD 250

Query: 233 ----DIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQK 288
               DIV C+DHMCPVRVHWHV+N Y+ HWRVK+T+SNYNYKRNYSNWNV+VQHPGFSQK
Sbjct: 251 IIGLDIVKCTDHMCPVRVHWHVKNIYLTHWRVKLTISNYNYKRNYSNWNVLVQHPGFSQK 310

Query: 289 ATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTLS 348
              YSFN ++LP+ GF++KVALFWG+ +YN ELLQ+ E Q+GSV T+ILLEKD  +FTLS
Sbjct: 311 INTYSFNCTLLPTFGFTDKVALFWGLQHYNNELLQSDEKQLGSVKTEILLEKDLSTFTLS 370

Query: 349 NGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP 385
           NGWALPRRIYF GE CEMPLPDTFP+LPN +SS   P
Sbjct: 371 NGWALPRRIYFGGEECEMPLPDTFPVLPNGSSSRKLP 407

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078050|ref|XP_002305480.1| predicted protein [Populus trichocarpa] gi|222848444|gb|EEE85991.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/406 (65%), Positives = 315/406 (77%), Gaps = 21/406 (5%)

Query: 1   CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSM 60
           CYDPLDP GNITVTFDIH W +DGY ARVTIQN++QYRHVD+PGW IGW+W + EII SM
Sbjct: 2   CYDPLDPSGNITVTFDIHDWRSDGYAARVTIQNFYQYRHVDKPGWNIGWSWTNEEIIWSM 61

Query: 61  SGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANS 120
            GA AT+QG CS  K+   HSC  +PVIVDL PDA P NM++ CCRGG++S+  I+P  S
Sbjct: 62  FGACATKQGECSPVKYGGAHSCMPNPVIVDLMPDAPPVNMSENCCRGGLISARAIDPLRS 121

Query: 121 FSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
            S FE+TV NL  N++ Y P NLTL APGPGYTCG + +  PTVS + GGRRQVQV++TW
Sbjct: 122 LSSFEMTVVNLDGNSTVYPPANLTLLAPGPGYTCGPVVETTPTVSSDFGGRRQVQVYKTW 181

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCI---------- 230
           KSTCTYSTFLANKTP CCVSLSTFYNP+VT CP CSCGCRDAD++T  C+          
Sbjct: 182 KSTCTYSTFLANKTPGCCVSLSTFYNPRVTACPDCSCGCRDADQSTVSCVRTHLSPWNSS 241

Query: 231 -----------SQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVV 279
                        DIV C+ HMCPVRVHWHV+NNY+ HWRVK+T+SNYNYK+NYS+WNV+
Sbjct: 242 EVDSLPLSDVEKADIVQCTAHMCPVRVHWHVKNNYMDHWRVKMTISNYNYKKNYSDWNVL 301

Query: 280 VQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLE 339
           VQHPGF Q +T +SFNS++LP+AGF+++VALFWG+  YN ELLQA + Q+GSV+T+IL E
Sbjct: 302 VQHPGFKQNSTTFSFNSTLLPTAGFADEVALFWGLQAYNNELLQADQRQLGSVSTEILFE 361

Query: 340 KDSESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP 385
           KDS  FTL NGWALPRRIYF GE C MPLPDTFP+LPN +S +  P
Sbjct: 362 KDSGMFTLRNGWALPRRIYFGGEECAMPLPDTFPVLPNGSSCTKPP 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467477|ref|XP_003604023.1| COBRA-like protein [Medicago truncatula] gi|355493071|gb|AES74274.1| COBRA-like protein [Medicago truncatula]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/400 (63%), Positives = 313/400 (78%), Gaps = 17/400 (4%)

Query: 1   CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSM 60
           CYDPLDP GNI+VTFDI+Q   +GY+ARVT++N+HQYRHVD+PGWK+GWTWA+ E+I SM
Sbjct: 29  CYDPLDPNGNISVTFDIYQRMENGYLARVTLENHHQYRHVDKPGWKLGWTWANKEVIWSM 88

Query: 61  SGAFATEQGNCSDFK-FQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPAN 119
           SGA AT++G+CS +   Q PHSC+KDP+IVD+ PD S QN +D CCRGG LS+  ++  N
Sbjct: 89  SGAIATDRGDCSSYSGSQMPHSCKKDPIIVDISPDVS-QNRSDHCCRGGRLSARAVDSFN 147

Query: 120 SFSFFEVTVGNL--GMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVF 177
           S S FE+ V NL    N+ G AP N+T  APGPGYTC      DP+VSL+ GG+RQV V 
Sbjct: 148 SLSSFELEVRNLEEKENSLGQAPNNVTFMAPGPGYTCSSFLTSDPSVSLDFGGQRQVPVL 207

Query: 178 RTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCG-CRDADKTTALCI------ 230
           RTWKSTCTYS+FLANK+PVCCVS STFYNP +TPC  C+CG CR+A+K +  CI      
Sbjct: 208 RTWKSTCTYSSFLANKSPVCCVSFSTFYNPIITPCRNCTCGGCREANKNSLSCIRPGDPL 267

Query: 231 -----SQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGF 285
                 ++I+ C+DHMCP+RVHWH +NNY+  WR+K+T+SNYN+ RNYSNWNV+VQHPGF
Sbjct: 268 GGSNDEKNIIECTDHMCPIRVHWHFKNNYMNQWRIKLTISNYNFNRNYSNWNVLVQHPGF 327

Query: 286 SQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESF 345
           +QKAT YSFNS+ L + G  + VALFWGI YYN ELL + +++VGSVTT+ILLEKD  SF
Sbjct: 328 NQKATTYSFNSTKLSTLGIQDGVALFWGIDYYNNELLHSDKDRVGSVTTEILLEKDENSF 387

Query: 346 TLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP 385
           TL NGW  PRRIYFNGENC+MPLPDTFPMLPN  SSSL+P
Sbjct: 388 TLQNGWTFPRRIYFNGENCDMPLPDTFPMLPN-GSSSLRP 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454343|ref|XP_004144915.1| PREDICTED: COBRA-like protein 2-like [Cucumis sativus]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/391 (63%), Positives = 300/391 (76%), Gaps = 13/391 (3%)

Query: 1   CYDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSM 60
           CYDPLDP GNIT+T+DI  WT  GYV RVT+QNY+Q+RHV+ PGWK+GWTW   E+I SM
Sbjct: 11  CYDPLDPNGNITITYDIQTWTTRGYVGRVTVQNYYQFRHVENPGWKLGWTWTRGEVIWSM 70

Query: 61  SGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANS 120
           +GAFATEQGNCS FKF  PHSCE  PVI+DL P+ASP+N ++ CCR GVLS++ ++P+ S
Sbjct: 71  NGAFATEQGNCSLFKFDIPHSCEDSPVILDLMPEASPENRSEGCCRSGVLSAWAVDPSKS 130

Query: 121 FSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           FS FE++VG+   + +   P N+TL APGPGYTC    D  PT+S  I G+R+VQVFRTW
Sbjct: 131 FSSFEISVGSTDEDGNEQPPVNITLMAPGPGYTCSPFLDSSPTISSVIDGKREVQVFRTW 190

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDI------ 234
           KSTCTYS F+ NKTPVCCVSLS FYNP +TPCP CSCGCR A K++  C   +       
Sbjct: 191 KSTCTYSIFVDNKTPVCCVSLSAFYNPSITPCPSCSCGCRKASKSSVQCTRDEYQLSSTD 250

Query: 235 -------VHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQ 287
                  V CSDHMCPVRVHWHV+ NY+ HWRVK+TVSNYNY RNYSNWN++VQHPGFSQ
Sbjct: 251 SATNLSSVRCSDHMCPVRVHWHVKTNYINHWRVKLTVSNYNYNRNYSNWNILVQHPGFSQ 310

Query: 288 KATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFTL 347
              A+SFN S LPS  F +++ALFWGI  +N EL+Q+ E+ +G VTT +LLEKD ESFTL
Sbjct: 311 STEAFSFNRSQLPSFRFGDELALFWGIEDFNTELVQSTESNMGYVTTDVLLEKDLESFTL 370

Query: 348 SNGWALPRRIYFNGENCEMPLPDTFPMLPNA 378
           SNGWA PRR+YFNG+NC M LPDTFPMLPN 
Sbjct: 371 SNGWAFPRRVYFNGDNCHMALPDTFPMLPNG 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517868|ref|XP_003527608.1| PREDICTED: COBRA-like protein 2-like [Glycine max]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/397 (65%), Positives = 311/397 (78%), Gaps = 17/397 (4%)

Query: 1   CYDPLDPYGNITVTFDIHQWTND-GYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILS 59
           CYDPLDP GNI+VTFDI + T D GY+ARVT++NY+QYRHV++PGWK+GWTWA+NE+I S
Sbjct: 160 CYDPLDPNGNISVTFDILERTTDNGYLARVTLENYYQYRHVEKPGWKLGWTWANNEVIWS 219

Query: 60  MSGAFATEQGNCSDFK-FQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPA 118
           MSGA AT++GNCS +   Q PHSC+KDP IVDL  D S QN ++ CCRGG+LS+++I+P 
Sbjct: 220 MSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDVS-QNRSEHCCRGGLLSAWSIDPF 278

Query: 119 NSFSFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVF 177
           N+FS FE+ V N+G  N  G AP NLTL APGPGYTC  L D D +VS + GG RQV V 
Sbjct: 279 NAFSSFELEVRNVGDNNPLGQAPNNLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVL 338

Query: 178 RTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCIS------ 231
           RTWKSTC YS+F+AN  PVCCVSLS+FYNP +T C  CSCGCR+ADK+TA CI       
Sbjct: 339 RTWKSTCAYSSFIANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTASCIRPSSLPR 398

Query: 232 -------QDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPG 284
                   +I+ C+DHMCPVRVHWH +NNY+  WRVK+TVSNYNY RNYSNWNV+VQHPG
Sbjct: 399 SNGDNTIDEIIECTDHMCPVRVHWHFKNNYMNQWRVKLTVSNYNYNRNYSNWNVLVQHPG 458

Query: 285 FSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSES 344
           F+QKA  YSFNS+ LP+ G  + V+LFWGI YYN EL+ + +  VG VTT+ILL+KD  S
Sbjct: 459 FTQKARTYSFNSTRLPTLGLQDGVSLFWGIDYYNNELVHSDKGVVGLVTTEILLDKDPNS 518

Query: 345 FTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASS 381
           FT+SNGWA PRRIYFNGENCEMPLPDTFPMLPN +SS
Sbjct: 519 FTVSNGWAFPRRIYFNGENCEMPLPDTFPMLPNGSSS 555

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515389|gb|AFK45756.1| unknown [Lotus japonicus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/397 (51%), Positives = 255/397 (64%), Gaps = 21/397 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +DI  WT+DGYVA VT+ N+ QYRH+  PGW +GW WA  E+I SM 
Sbjct: 31  YDPLDPNGNITIKWDIITWTSDGYVAVVTMNNFQQYRHIAAPGWSLGWAWAKKEVIWSMV 90

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMT-DACCRGGVLSSYTINPANS 120
           G  ATEQG+CS FK   PH C+KDP +VDL P  +P NM    CC+GGVLSS+  +P N+
Sbjct: 91  GGQATEQGDCSKFKGSIPHCCKKDPTVVDLLP-GTPYNMQFSNCCKGGVLSSWAQDPTNA 149

Query: 121 FSFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
            + F+V+VG  G  N +   P+N TL APGPGYTCG  + V PT  ++   RR  Q   T
Sbjct: 150 VASFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVKPTKFIQPDKRRVTQALMT 209

Query: 180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------ 233
           W  TCTYS FLA KTP CCVSLS+FYN  + PCP C+CGC+     +  CI  D      
Sbjct: 210 WNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSRSGSCIEADTPHLAS 269

Query: 234 ----------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHP 283
                     +V C+ HMCPVR+HW V+ NY  +WRVKVT++N+NYK NYS WN+V QHP
Sbjct: 270 VVAGSGKNTPLVQCTRHMCPVRIHWRVKLNYKEYWRVKVTITNFNYKMNYSEWNLVAQHP 329

Query: 284 GFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSE 343
            F      +SFN   L   G     AL WG+ +YN+ L +AG +  G+V +++L  KD  
Sbjct: 330 NFDNLTQLFSFNYKSLTPYGSINDTALLWGVKFYNDFLNEAGPS--GNVQSELLFRKDKS 387

Query: 344 SFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAAS 380
           +FT   GWA PRRIYFNG+NC MP PD +P LPNA S
Sbjct: 388 TFTFERGWAFPRRIYFNGDNCVMPSPDAYPWLPNAGS 424

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357115193|ref|XP_003559376.1| PREDICTED: COBRA-like protein 3-like [Brachypodium distachyon]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/404 (49%), Positives = 261/404 (64%), Gaps = 22/404 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YD LDP GNIT+ +DI +WT DGYVA VT+ NY Q+RH+  PGW++GWTWA  E+I SM 
Sbjct: 36  YDSLDPNGNITIKWDIREWTADGYVAVVTMFNYQQFRHISAPGWQLGWTWAKKEVIWSMV 95

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           GA ATEQG+CS FK   PHSC++DP IVDL P          CC+ GV+ ++  +P+N+ 
Sbjct: 96  GAQATEQGDCSKFKSSPPHSCKRDPTIVDLLPGTPYNQQIANCCKAGVIDTFNQDPSNAA 155

Query: 122 SFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+V+VG  G  N +   P+N TL APGPGYTCG      PT      GRR  Q   TW
Sbjct: 156 SSFQVSVGLAGTTNKTVKVPKNFTLKAPGPGYTCGRAIVGKPTKYFTSDGRRATQALMTW 215

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCIS--------- 231
             TCTYS FLA KTP CCVSLS+FYN  +  CP CSCGC++ +     C++         
Sbjct: 216 NVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNNTRPGSCVNENSPYLQSA 275

Query: 232 ---------QDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQH 282
                    Q +V C+ HMCP+R+HWHV+ NY  +WRVKVT++N+NY+ NY+ WN+VVQH
Sbjct: 276 IDGPGKYTGQPLVQCTSHMCPIRIHWHVKLNYKDYWRVKVTITNFNYRMNYTQWNLVVQH 335

Query: 283 PGFSQKATAYSFNSSVL-PSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKD 341
           P F      +SFN   L P  G     A+FWG+ +YN+ L+QAG   +G+  ++ILL+KD
Sbjct: 336 PNFDNITKLFSFNYKPLTPYGGGINDTAMFWGMKFYNDLLMQAGP--LGNAQSEILLKKD 393

Query: 342 SESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSLKP 385
           S +FT   GWA PRR+YFNG+NC MP PD +P LPNA+  + +P
Sbjct: 394 SATFTFDKGWAFPRRVYFNGDNCVMPSPDAYPWLPNASPLTKQP 437

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046228|ref|XP_002460985.1| hypothetical protein SORBIDRAFT_02g038720 [Sorghum bicolor] gi|241924362|gb|EER97506.1| hypothetical protein SORBIDRAFT_02g038720 [Sorghum bicolor]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/398 (50%), Positives = 260/398 (65%), Gaps = 23/398 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +D+ QWT+DGYVA V++ NY QYRH+  PGWK+GW WA  E+I +M+
Sbjct: 38  YDPLDPNGNITIKWDVIQWTSDGYVAVVSLYNYQQYRHIQAPGWKLGWVWAKKEVIWAMT 97

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
           G  ATEQG+CS FK   PH C KDP +VDL P  +P NM  A CC+GGVL+S+  +P+N+
Sbjct: 98  GGQATEQGDCSKFKTNIPHCCRKDPEVVDLLP-GTPYNMQIANCCKGGVLTSWAQDPSNA 156

Query: 121 FSFFEVTVGNLG-MNASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
            + F+V+VG  G  N +   P+N TL APGPGYTCG  + V PT  +   GRR  Q   T
Sbjct: 157 VASFQVSVGQAGTTNRTVKVPKNFTLKAPGPGYTCGTAKLVTPTKFISPDGRRSTQAHMT 216

Query: 180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------ 233
           W  TCTYS FLA ++P CCVSLS+FYN  +  CP CSCGC++       C+  +      
Sbjct: 217 WNVTCTYSQFLAQRSPSCCVSLSSFYNDTIVNCPTCSCGCQNNSTAPGSCVEGNSPYLAS 276

Query: 234 ------------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQ 281
                       +V C+ HMCP+RVHWHV+ NY  +WRVK+TV+N+NY+ NYS WN+V Q
Sbjct: 277 VVNDPNKNSLAPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVAQ 336

Query: 282 HPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKD 341
           HP F    T +SFN   L   G     A+ WGI YYN+ L+ AG +  G+V +++L  K+
Sbjct: 337 HPNFDNLTTIFSFNYKPLNPYGVINDTAMLWGIKYYNDLLMTAGPD--GNVQSELLFRKE 394

Query: 342 SESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAA 379
             +FT   GWA PRR+YFNG+NC MP PD +P LPNA+
Sbjct: 395 PSTFTFQKGWAFPRRVYFNGDNCVMPPPDAYPWLPNAS 432

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077744|ref|XP_002305390.1| predicted protein [Populus trichocarpa] gi|222848354|gb|EEE85901.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/401 (49%), Positives = 256/401 (63%), Gaps = 21/401 (5%)

Query: 2   YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
           YDPLDP GNIT+ +DI  WT DGYVA VTI N+ QYRH+  PGW +GWTWA  E+I SM 
Sbjct: 34  YDPLDPTGNITIKWDIISWTADGYVAVVTIYNFQQYRHIQAPGWSLGWTWAKKEVIWSML 93

Query: 62  GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
           G  AT+QG+CS FK   PH C+K P +VDL P       T  CC+GGV+SS+  +PAN+ 
Sbjct: 94  GGQATDQGDCSKFKGNVPHCCKKSPTVVDLLPGTPYNQQTANCCKGGVISSWAQDPANAA 153

Query: 122 SFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
           S F+++VG+ G  N +   P+N TL APGPGYTC   + V PT  +    RR  Q   TW
Sbjct: 154 SSFQLSVGSAGTSNKTVRLPKNFTLKAPGPGYTCARAKIVKPTRFMSTDKRRITQALMTW 213

Query: 181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQD------- 233
             TCTYS FLA KTP CCVSLS+FYN  + PCP C+CGC+  +  +  C+  +       
Sbjct: 214 NVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPKCTCGCQRNNSDSGGCVDPNAPHLASV 273

Query: 234 -----------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQH 282
                      +V C+ HMCP+RVHWHV+ NY  +WRVKVT++N+NY  NY+ WN+VVQH
Sbjct: 274 VSSLGNNNPMPLVQCTSHMCPIRVHWHVKLNYKQYWRVKVTITNFNYNMNYTQWNLVVQH 333

Query: 283 PGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDS 342
           P F     ++SFN   L         A+ WG+ +YN+ L+QAG +  G+V +++L  KD 
Sbjct: 334 PNFDNLTQSFSFNYQSLSPYSAINDTAMLWGVKFYNDLLMQAGRS--GNVQSELLFRKDK 391

Query: 343 ESFTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSSL 383
            +FT   GWA PRRIYFNG+NC MP PD +P LPNA+S  L
Sbjct: 392 STFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRQL 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
TAIR|locus:2076507	452	COBL1 "COBRA-like protein 1 pr	0.576	0.491	0.551	2.3e-112
TAIR|locus:2086601	441	COBL2 "AT3G29810" [Arabidopsis	0.971	0.848	0.498	2.3e-110
TAIR|locus:2143151	431	IRX6 "IRREGULAR XYLEM 6" [Arab	0.984	0.879	0.454	2e-102
TAIR|locus:2024377	454	COBL6 "AT1G09790" [Arabidopsis	0.979	0.830	0.442	1.9e-92
TAIR|locus:2173532	456	COB "AT5G60920" [Arabidopsis t	0.761	0.642	0.432	5.8e-66
TAIR|locus:2085785	672	COBL10 "COBRA-like protein 10	0.566	0.324	0.283	1.2e-29
TAIR|locus:2130100	661	COBL7 "AT4G16120" [Arabidopsis	0.568	0.331	0.252	2.8e-29
TAIR|locus:2173547	204	COBL5 "COBRA-like protein 5 pr	0.441	0.833	0.408	5.6e-29
TAIR|locus:2155889	663	SHV2 "SHAVEN 2" [Arabidopsis t	0.584	0.339	0.264	6.5e-29
TAIR|locus:2093673	653	COBL8 "COBRA-like protein 8 pr	0.555	0.327	0.268	1.1e-27

TAIR|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
 Identities = 124/225 (55%), Positives = 149/225 (66%)

Query:     2 YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
             YDPLDP GNITV +DI  WT DGYVA VT+ N+ QYRH+  PGW +GW+WA  E+I  M+
Sbjct:    34 YDPLDPSGNITVKWDIITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMN 93

Query:    62 GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
             G   TEQG+CS FK   PH C+K P +VDL P  SP N   A CCRGGVL+S+  +PA +
Sbjct:    94 GGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLP-GSPYNQQIANCCRGGVLNSWAQDPATA 152

Query:   121 FSFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
              S F++TVG  G  N +   P+N TL APGPGYTC   + V PT  +    RR  Q   T
Sbjct:   153 VSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQALMT 212

Query:   180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADK 224
             W  TCTYS FLA KTP CCVSLS+FYN  +  CP CSCGCR+  +
Sbjct:   213 WNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNTSQ 257

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 197/395 (49%), Positives = 257/395 (65%)

Query:     2 YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
             YD LDPYGNIT+ +DI  WT DGYVA VTI N+ QYRH++ PGW++GW+W   E+I SM 
Sbjct:    29 YDALDPYGNITIKWDIMSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMV 88

Query:    62 GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
             G  ATEQG+CS FK   PH C+K P IVDL P          CCRGGV+S++  +PA + 
Sbjct:    89 GGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATAI 148

Query:   122 SFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
             S F+++VG  G  N +  AP+N+TL APGPGYTCG  + V P+  +    RR+ Q   TW
Sbjct:   149 SSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQSLLTW 208

Query:   181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCIS--------- 231
               TCTYS FLA KTP CCVSLS FYN  + PCP CSCGC+++ +    C+          
Sbjct:   209 NITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNSSQA-GTCVDPKIASVVPA 267

Query:   232 ------QDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGF 285
                   + ++ C+ HMCP+RVHWHV+ +Y  +WRVKV ++N+NY  NYS WN+VVQHP F
Sbjct:   268 LGKNNLEPLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNF 327

Query:   286 SQKATAYSFNSSVL-PSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSES 344
                   +SFN   L P    ++  A+ WGI +YN+ L QAG   VG+V +++L +K+   
Sbjct:   328 DNLTKLFSFNYKPLNPYLNIND-TAMLWGIKFYNDFLSQAGP--VGNVQSELLFQKNPLE 384

Query:   345 FTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAA 379
             FT   GWA PRRIYFNG+NC MP PD++P LPNA+
Sbjct:   385 FTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNAS 419

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 180/396 (45%), Positives = 248/396 (62%)

Query:     2 YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
             YDPLDP GNIT+ +DI  WT DGYVA VT+ N+  YRH+  PGW +GWTWA  E+I SM 
Sbjct:    21 YDPLDPSGNITIKWDIMSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMV 80

Query:    62 GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSF 121
             GA  TEQG+CS FK   PH C+K P +VDL P          CC+GGV+ ++  +P+ + 
Sbjct:    81 GAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAAV 140

Query:   122 SFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTW 180
             S F+V+ G  G  N +   P+N TL  PGPGYTCG  + V  TV L    RR+ Q   TW
Sbjct:   141 SQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQALMTW 200

Query:   181 KSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRD------ADK--------TT 226
               TCTYS FLA K P CCVS S+FYN  +TPCP C+CGC +      AD          T
Sbjct:   201 NVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCENKKSCVKADSKILTKKGLNT 260

Query:   227 ALCISQDIVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFS 286
                 +  ++ C+ HMCPVRVHWHV+ NY  +WRVK+ ++N+NY+ N++ W + +QHP  +
Sbjct:   261 PKKDNTPLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLN 320

Query:   287 QKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSESFT 346
                  +SF+   +   G      +F+G  +YN+ L++AG +  G+V +++LL+KD ++FT
Sbjct:   321 NVTQVFSFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPS--GNVQSEVLLQKDQKTFT 378

Query:   347 LSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSS 382
                GWA PR++YFNG+ C +P PD++P LPN+A  +
Sbjct:   379 FKQGWAFPRKVYFNGDECMLPPPDSYPFLPNSAQGN 414

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 176/398 (44%), Positives = 235/398 (59%)

Query:     2 YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
             YDPLDP+G I + +D+   +   +  +VT++N  +YRHV++PGWK+ W W + E+I  M 
Sbjct:    36 YDPLDPFGKIIIKWDLLLSSPGQHHVQVTLENMQEYRHVEKPGWKLSWHWLNQEVIWDMK 95

Query:    62 GAFATEQGNCSDFKFQS--PHSCEKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPAN 119
             GA  TEQGNCS F      PH C + P IVDL P AS       CCRGGVL+S + + AN
Sbjct:    96 GAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDHAN 155

Query:   120 SFSFFEVTVGNLGMNASGY-APQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFR 178
               S F +TVG+       +  P N  +  PG  Y+C     V PT      GRR+ Q   
Sbjct:   156 HVSAFHMTVGSSPDGPEEFNMPSNFDIGVPG--YSCDNATSVSPTKFSTDKGRRKTQALA 213

Query:   179 TWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGC------RDADKTTALCISQ 232
             TW++ C YS F ++ +P CCVSLS FY   + PCP CSCGC      +D +    L    
Sbjct:   214 TWEAVCVYSQFRSSPSPKCCVSLSAFYYQNIVPCPTCSCGCSSSHCVKDGELPPYLEQKH 273

Query:   233 D-------IVHCSDHMCPVRVHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGF 285
             D       +V CSDHMCP+R+HWHV+ NY  +WRVK+T +N+N  +NY+NWN+VV HP  
Sbjct:   274 DPDEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNL 333

Query:   286 SQKATAYSFN-SSVLPSAGFSEKVALFWGISYYNEELLQAGENQVGSVTTQILLEKDSES 344
                   +SFN  S+ P         +FWG+ +YN+ LLQ G+  +G+V T++LL+KD  +
Sbjct:   334 KSVQQVFSFNYKSLTPYQNSINDTGMFWGVQFYNDVLLQEGK--IGNVQTELLLKKDMGN 391

Query:   345 FTLSNGWALPRRIYFNGENCEMPLPDTFPMLPNAASSS 382
             FT   GWA PRRI FNG+ C MP PD FP LP +A SS
Sbjct:   392 FTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSAHSS 429

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 129/298 (43%), Positives = 175/298 (58%)

Query:     2 YDPLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMS 61
             YD LDP GNIT+ +D+  WT DGYVA VT+ N+ +YRH+  PGW +GW WA  E+I SM 
Sbjct:    37 YDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMV 96

Query:    62 GAFATEQGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANS 120
             GA  TEQG+CS +K   PH C+KDP +VDL P  +P N   A CC+GGV++S+  +PA +
Sbjct:    97 GAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLP-GTPYNQQIANCCKGGVMNSWVQDPATA 155

Query:   121 FSFFEVTVGNLGM-NASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT 179
              S F+++VG  G  N +   P+N TL  PGPGYTCG  + V PT  +    RR  Q   T
Sbjct:   156 ASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQAMMT 215

Query:   180 WKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALCISQDIVHCSD 239
             W  TCTYS FLA +TP CCVSLS+FYN  +  CP C+CGC++    +  C+  D  H + 
Sbjct:   216 WNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLAS 275

Query:   240 HMCPVRVHWHVQNNYVGHWRVKVTVS-NYNYKRNYSN-WNVVVQHPGFSQKATAYSFN 295
              + P      V    V   R    +  +++ K+NY   W V +    F+ +     +N
Sbjct:   276 VVSPPTKKGTVLPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWN 333

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009825 "multidimensional cell growth" evidence=RCA;IMP

GO:0009897 "external side of plasma membrane" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010215 "cellulose microfibril organization" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009930 "longitudinal side of cell surface" evidence=IDA

TAIR|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 67/236 (28%), Positives = 103/236 (43%)

Query:     8 YGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATE 67
             YG++ + +D+ Q  +  Y+A+VTI N +    +D+      W   +    +  +     +
Sbjct:   228 YGDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKD 287

Query:    68 QGNC---------SDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA---CCRGGVLSSYTI 115
                C          D  F    +C++ P I DL P+    NMT     CC+ G L    +
Sbjct:   288 PSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIM 347

Query:   116 NPANSFSFFEVTVGNL--GMNASG-YAPQNLTL-WAPGPGYTCGLLEDVDPTVSLEIGGR 171
             +P+ S S F++ V  L   +N +  Y PQ+  +     P Y CG    VDP+   +  G 
Sbjct:   348 DPSKSRSMFQLQVFKLPPDLNRTALYPPQHWKIDGVLNPQYKCGPPVRVDPSQFPDPSGL 407

Query:   172 RQVQ-VFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTT 226
               V     +W+  C  +   A  +  CCVS S FYN    PC  C+CGC D D  T
Sbjct:   408 LAVTYAISSWQVVCNITKPKAQASR-CCVSFSAFYNNSAVPCNTCACGCNDIDTDT 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
 Identities = 60/238 (25%), Positives = 110/238 (46%)

Query:     9 GNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQ 68
             G++T+ +D+ +  +  Y+A+VT++N++    +D       W   +    +  +     + 
Sbjct:   217 GDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDWMRDEFIYTMKGAYPSIVDS 276

Query:    69 GNC---------SDFKFQSPHSCEKDPVIVDLGP---DASPQNMTDACCRGGVLSSYTIN 116
              +C          D  F +  SC + P ++DL P   + S   +   CCR G +   +++
Sbjct:   277 SDCVDGPQAKHYQDLDFSNVLSCARRPTVIDLPPTKYNDSTFGLIPFCCRNGTILPRSMD 336

Query:   117 PANSFSFFEVTVGNL--GMNASGYAP-QNLTLWAP-GPGYTCGLLEDVDPTVSLEIGGRR 172
             P+ S S F++ V  +   +N S  +P QN  +     P Y CG    V P+  ++  G  
Sbjct:   337 PSKSSSVFQMQVYKMPPDLNISALSPPQNWRINGTLNPDYKCGPPVRVSPSQFVDPSGLP 396

Query:   173 QVQV-FRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTALC 229
               +  F +W+  C   T   + +P CCVS S ++N  + PC  C+CGC  ++K    C
Sbjct:   397 SNRTAFASWQVVCNI-TQPKDASPRCCVSFSAYFNDSIVPCKTCACGC-SSNKAARAC 452

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISS

TAIR|locus:2173547 COBL5 "COBRA-like protein 5 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 74/181 (40%), Positives = 95/181 (52%)

Query:     8 YGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATE 67
             YGNITV +D+  WT DGYVA VT  NY + R +  PGWK+ W     E+I +M GA  T 
Sbjct:    29 YGNITVKWDLLNWTPDGYVAVVTAYNYQKQRSI--PGWKMSWRGTKKEVIWNMLGAKTTG 86

Query:    68 QGNCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-CCRGGVLSSYTINPANSFSFFEV 126
             QG CS FK   P SC + P +VDL P  +P N   A CC+ GVL      P +  S F++
Sbjct:    87 QGGCSMFKGNIPQSCVRKPTVVDLLP-GTPFNQQIANCCKSGVLK-----PGSE-SAFQL 139

Query:   127 TVGNLGMNA-SGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCT 185
             +VG+ G +  +   P N    AP   Y CG  ++V PT       RR      TW  TC 
Sbjct:   140 SVGSAGNSVKTARMPANFMFTAPKQQYICGPSKNVRPTRFTTADKRRITAALMTWNITCV 199

Query:   186 Y 186
             +
Sbjct:   200 F 200

GO:0005886 "plasma membrane" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 6.5e-29, Sum P(2) = 6.5e-29
 Identities = 65/246 (26%), Positives = 107/246 (43%)

Query:     4 PLDPYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWT---------WADN 54
             P  P G++T+ +D+ +  +  Y+  VT++N++    +D       W           A  
Sbjct:   212 PRQP-GDLTIMYDVIRAYDQNYLTEVTMENHNPLGRLDHWELSFDWMRDEFIQKMQGAYP 270

Query:    55 EIILSMSGAFATEQGNCSDFKFQSPHSCEKDPVIVDLGP---DASPQNMTDACCRGGVLS 111
              ++ +    F  +    +   F    +CE+ P+I+DL P   D S      +CCR G + 
Sbjct:   271 TVVDATKCIFGPQSLIYTGLDFADVLTCERRPIIIDLPPTKKDDSTLGNIPSCCRNGTIL 330

Query:   112 SYTINPANSFSFFEVTVGNL--GMNASG-YAPQNLTLWAP-GPGYTCGLLEDVDPTVSLE 167
                ++P+ S S F + V  +    N S  + PQN  +     P Y+CG    V PT   +
Sbjct:   331 PRIMDPSKSVSVFTMQVAKMPPDFNRSALFPPQNWRIKGTLNPDYSCGPPVRVTPTFYPD 390

Query:   168 IGGR-RQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTT 226
               G       F +W+  C   T    + P CCVS S F+N  + PC  C+CGC    +T 
Sbjct:   391 PSGMPTNKSSFASWQIVCNI-TQAKTEIPKCCVSFSAFFNDSIIPCNTCACGC--VSETR 447

Query:   227 ALCISQ 232
               C ++
Sbjct:   448 RTCSAE 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA;IMP

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2093673 COBL8 "COBRA-like protein 8 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 65/242 (26%), Positives = 110/242 (45%)

Query:     9 GNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFAT-- 66
             G++T+ +D+ +     Y A+VTI+N++    +D   W + + W  +E + S  GA+ +  
Sbjct:   210 GDLTIMYDVTRAYQSSYSAQVTIENHNLLGRLDN--WDLSFMWMKDEFLFSTKGAYPSVV 267

Query:    67 EQGNC---------SDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA-----CCRGGVLSS 112
             +  +C          D  F +  SC + P I+DL P  +  N T+      CCR G +  
Sbjct:   268 DSSDCITGPQAKYYKDLDFSNVMSCARRPHIIDL-P-LTKYNDTNVGRIPYCCRNGTILP 325

Query:   113 YTINPANSFSFFEVTVGNL--GMNASGYAP-QNLTLWAP-GPGYTCGLLEDVDPTVSLEI 168
              +++P  S S F++ V  +   +N S   P Q+  +     P Y CG    V  +   + 
Sbjct:   326 RSMDPEKSKSVFQIEVYKMPPDLNISSITPPQSWQIKGNLNPDYKCGPPLRVSSSQFPDT 385

Query:   169 GGR-RQVQVFRTWKSTCTYSTFLANKTPVCCVSLSTFYNPKVTPCPVCSCGCRDADKTTA 227
              G       F +W+  C  +       P CCVS S+++N  V PC  C+CG   +D+   
Sbjct:   386 SGLPSNKSAFASWQVVCNITQ---PTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVAR 442

Query:   228 LC 229
              C
Sbjct:   443 TC 444

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z4G8	COBL1_ORYSJ	No assigned EC number	0.5024	0.9792	0.8452	yes	no
Q8L8Q7	COBL2_ARATH	No assigned EC number	0.5	0.9740	0.8503	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036025001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (433 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
pfam04833	169	pfam04833, COBRA, COBRA-like protein	4e-58

>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein

 Score =  186 bits (474), Expect = 4e-58
 Identities = 79/169 (46%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 25  YVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFKFQS--PHSC 82
           YVA+VTI+NY  YRH+D PGWK+ W WA  E+I SM GA+ TEQG+CS F      PH C
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYTTEQGDCSKFYKDGDFPHCC 60

Query: 83  EKDPVIVDLGPDASPQNMTDACCRGGVLSSYTINPANSFSFFEVTVGNL--GMNASG-YA 139
           +K P IVDL P          CC+ GVL   + +PA S S F+++VG      N      
Sbjct: 61  KKRPTIVDLPPGTPYDQQIANCCKNGVLLPRSQDPAKSVSAFQMSVGKAPPDTNRKTVRP 120

Query: 140 PQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRTWKSTCTYST 188
           PQN T+  P PGYTCG    V PT   +  GRR  Q   TW+ TC YS 
Sbjct: 121 PQNFTIKGPNPGYTCGPAVRVSPTRFPDPDGRRTTQALATWQVTCNYSQ 169

Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
PF04833	169	COBRA: COBRA-like protein; InterPro: IPR006918 In	100.0
PF00553	101	CBM_2: Cellulose binding domain; InterPro: IPR0019	95.89
PF00553	101	CBM_2: Cellulose binding domain; InterPro: IPR0019	82.37

>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []

Probab=100.00  E-value=2.8e-85  Score=589.99  Aligned_cols=164  Identities=52%  Similarity=0.971  Sum_probs=160.5

Q ss_pred             eEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeecCccccC--CCCCccccCCCeEEecCCCCCCCCccc
Q 043271           25 YVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGNCSDFK--FQSPHSCEKDPVIVDLGPDASPQNMTD  102 (385)
Q Consensus        25 Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqgdC~~~k--~~~ph~C~k~P~IvDLpP~~~~d~qi~  102 (385)
                      |+|+|||+|||+|||||.|||+|||+|+++||||+|+|||++|||||++|+  +++||||+|+|+|||||||+++|+||+
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~   80 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIG   80 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccc
Confidence            899999999999999999999999999999999999999999999999998  889999999999999999999999999


Q ss_pred             ccccCCeeccCccCcCCccceEEEEEeecCC--C-CCCcCCcCeEeecCCCCcccCCceecCCCcccCCCCceeeeEEEE
Q 043271          103 ACCRGGVLSSYTINPANSFSFFEVTVGNLGM--N-ASGYAPQNLTLWAPGPGYTCGLLEDVDPTVSLEIGGRRQVQVFRT  179 (385)
Q Consensus       103 nCCr~Gvl~~~~~Dps~s~S~FQm~Vg~~~~--n-~t~~~P~nf~l~~pgPgYtCg~~~~V~Pt~f~~~~g~r~tqAl~T  179 (385)
                      ||||||||+||+|||+||+|+|||+||++|+  | ++++||+||+|++|||||+||+|++|+||+|+|+||||.||||||
T Consensus        81 nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~~pgYtCg~~~~V~pT~f~~~~g~r~t~A~~T  160 (169)
T PF04833_consen   81 NCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGPGPGYTCGPPKRVSPTVFPDPDGRRTTQALMT  160 (169)
T ss_pred             cccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCCCCCcCCCCcceeCCceeeCCCCCEEEEEEEE
Confidence            9999999999999999999999999999966  4 459999999999999999999999999999999999999999999


Q ss_pred             Eeeeeeeec
Q 043271          180 WKSTCTYST  188 (385)
Q Consensus       180 WqVtC~ysq  188 (385)
                      |||||||||
T Consensus       161 WqvtC~ysq  169 (169)
T PF04833_consen  161 WQVTCNYSQ  169 (169)
T ss_pred             EeEEEEeeC
Confidence            999999997

The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3

Probab=95.89  E-value=0.04  Score=45.68  Aligned_cols=55  Identities=25%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             EEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271           12 TVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus        12 tI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      +++|.|.+--++||.++|+|.|..- ..|+  ||+|.|+-..++-|-++.+|..+..|
T Consensus         2 tv~~~v~~~W~~Gf~~~v~v~N~~~-~~i~--~W~v~~~~~~~~~i~~~Wna~~s~~g   56 (101)
T PF00553_consen    2 TVTYTVTNSWGGGFQGEVTVTNNGS-SPIN--GWTVTFTFPSGQTITSSWNATVSQSG   56 (101)
T ss_dssp             EEEEEEEEESSSEEEEEEEEEESSS-STEE--SEEEEEEESTTEEEEEEESCEEEEET
T ss_pred             EEEEEEecccCCCeEEEEEEEECCC-CccC--CEEEEEEeCCCCEEeeeeccEEEecC
Confidence            6899999888999999999999885 4564  89999999988998899999877643

2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....

>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3

Probab=82.37  E-value=7.6  Score=32.19  Aligned_cols=99  Identities=23%  Similarity=0.368  Sum_probs=61.6

Q ss_pred             EEEEEeeCCCCceEEEEEEEeccCccCcccceEEEecCCCCCcceEEeeccccCCCCCCCcceEEEecccchhHHHHHcC
Q 043271          246 VHWHVQNNYVGHWRVKVTVSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSVLPSAGFSEKVALFWGISYYNEELLQAG  325 (385)
Q Consensus       246 IhWHVk~nYk~~WrvkiTi~N~~~~~ny~~W~lvvqhpn~~~~~~~ySFN~t~l~~y~~~N~T~m~~Gl~~yN~ll~~~g  325 (385)
                      +-.-|..+.-+++.+.|+|+|=. .....+|.+-++.|.-.-+++++  |++.- .   ..+++.+-++. ||-.|.   
T Consensus         3 v~~~v~~~W~~Gf~~~v~v~N~~-~~~i~~W~v~~~~~~~~~i~~~W--na~~s-~---~g~~~~v~~~~-wn~~i~---   71 (101)
T PF00553_consen    3 VTYTVTNSWGGGFQGEVTVTNNG-SSPINGWTVTFTFPSGQTITSSW--NATVS-Q---SGNTVTVTNPS-WNGTIA---   71 (101)
T ss_dssp             EEEEEEEESSSEEEEEEEEEESS-SSTEESEEEEEEESTTEEEEEEE--SCEEE-E---ETTEEEEEESS-TCSEEE---
T ss_pred             EEEEEecccCCCeEEEEEEEECC-CCccCCEEEEEEeCCCCEEeeee--ccEEE-e---cCCEEEEEcCC-cCcccC---
Confidence            45667888999999999999966 36777999999998645555555  44421 1   22456666553 443222   


Q ss_pred             CCCCCceeEEEEEEecCCCceecCCCCCceeeEeeCCcc
Q 043271          326 ENQVGSVTTQILLEKDSESFTLSNGWALPRRIYFNGENC  364 (385)
Q Consensus       326 ~~~~G~vQSeilf~K~~~~ft~~~Gw~FP~rVyFNGeeC  364 (385)
                         +|.. ..+-|.=..     ....+-|..+-|||..|
T Consensus        72 ---~G~s-~~~Gf~~~~-----~~~~~~p~~~t~ng~~C  101 (101)
T PF00553_consen   72 ---PGGS-VTFGFQASG-----SGSSAAPSTCTVNGAPC  101 (101)
T ss_dssp             ---ESEE-EEEEEEEEE-----SSS--SESEEEETTEEE
T ss_pred             ---CCCe-EEEEEEEeC-----CCCCCCCcEEEEcCeeC
Confidence               2322 234444321     22234599999999998

2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1exg_A	110	EXO-1,4-beta-D-glycanase; cellulose binding domain	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 56/391 (14%), Positives = 117/391 (29%), Gaps = 107/391 (27%)

Query: 2   YDPLDPYGNITVTFDIHQWT-NDG------YVARVTIQNYHQYRHV---DQPGWKIGWTW 51
            +   P     +  +      ND        V+R  +Q Y + R      +P   +    
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNV---- 153

Query: 52  ADNEIILSMSGA----FATEQGNCSDFKFQSPHSCEKDPVI-VDLG----PDASPQNMTD 102
               +I  + G+     A +   C  +K Q         +  ++L     P+   + +  
Sbjct: 154 ----LIDGVLGSGKTWVALDV--CLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQK 204

Query: 103 ACCRGGVLSSYTINPANSFSFFEVTVGNLGMNASGYAPQNLTLWAPGPGYTCGL-LEDV- 160
              +  +  ++T    +S +        L +++     + L    P     C L L +V 
Sbjct: 205 LLYQ--IDPNWTSRSDHSSNIK------LRIHSIQAELRRLLKSKPYE--NCLLVLLNVQ 254

Query: 161 DPTV--SLEIGGR-----RQVQVFRTWKSTCTYSTFLANK----TPVCCVSL-STFYNPK 208
           +     +  +  +     R  QV     +  T    L +     TP    SL   + + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 209 VTPCPVCSCGCRDADKTTALCISQDIVHCSDHMCPVRVHWHVQNNY--VGHWRVKVTVSN 266
               P      R+   T    +S       D +      W   +N+  V   ++   + +
Sbjct: 315 PQDLP------REVLTTNPRRLSIIAESIRDGLA----TW---DNWKHVNCDKLTTIIES 361

Query: 267 -------YNYKRNYSNWNVVVQHPGFSQKATAYSFNSSV-LPSAGFSEKV-ALFWGISYY 317
                    Y++ +    + V             F  S  +P       + +L W     
Sbjct: 362 SLNVLEPAEYRKMF--DRLSV-------------FPPSAHIP-----TILLSLIWFDVIK 401

Query: 318 NEELLQAGENQVGSVTTQILLEKDSESFTLS 348
           ++         V  +    L+EK  +  T+S
Sbjct: 402 SDV-----MVVVNKLHKYSLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 47/363 (12%), Positives = 102/363 (28%), Gaps = 92/363 (25%)

Query: 15  FDIHQWTNDGYVARVT-----IQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG 69
           F I  W N             +Q       +D       WT + ++   ++     + Q 
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKL--LYQIDPN-----WT-SRSDHSSNIKLRIHSIQA 232

Query: 70  NCSDFKFQSPHSCEKDPVIVDLGPDASPQNMTDA---CCRGGVLSSYTINPANSFSFFEV 126
                    P+  E   +++    +       +A    C+  + + +     +  S    
Sbjct: 233 ELRRLLKSKPY--ENCLLVLL---NVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATT 286

Query: 127 TVGNLGMNASGYAP-QNLTLWAPGPGYTCGLL----EDVDP-TVSLEIGGRRQVQVFR-- 178
           T  +L  ++    P +  +L           L       +P  +S+ I    +  +    
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWD 345

Query: 179 ------TWKSTCTYSTFLANKTPV----CCVSLSTFYNPKVTPCPVCSCGCRDADKTTAL 228
                   K T    + L    P         LS F  P     P           T  L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIP-----------TILL 392

Query: 229 CI---------SQDIVH----------------CSDHMCPVRVHWHVQNNYVGHWRVKVT 263
            +            +V+                 S     + +   ++N Y  H   +  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSI 449

Query: 264 VSNYNYKRNYSNWNVVVQHPGFSQKATAYSFNSSV--LPSAGFSEKVALFWGISYYNEEL 321
           V +YN  + + + +++  +         Y ++     L +    E++ LF  + + +   
Sbjct: 450 VDHYNIPKTFDSDDLIPPY------LDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRF 502

Query: 322 LQA 324
           L+ 
Sbjct: 503 LEQ 505

>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Length = 110

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 7  PYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQP--GWKIGWTWADNEIILSMSGAF 64
                V + ++QW N G+ A VT++N         P  GW + +++   + +     + 
Sbjct: 4  GPAGCQVLWGVNQW-NTGFTANVTVKN-----TSSAPVDGWTLTFSFPSGQQVTQAWSST 57

Query: 65 ATEQGN 70
           T+ G+
Sbjct: 58 VTQSGS 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3ndz_E	107	Endoglucanase D; cellotriose, xylanase, carbohydra	95.92
1exg_A	110	EXO-1,4-beta-D-glycanase; cellulose binding domain	94.41
3icg_A	515	Endoglucanase D; cellulase, xylanase, carbohydrate	94.31
1e5b_A	87	Xylanase D; hydrolase, xylan binding domain, beta-	93.65
2cwr_A	103	Chitinase; chitin-binding domain, endoglucanase, h	92.5
1heh_C	88	Endo-1,4-beta-xylanase D; hydrolase(xylan degradat	88.37

>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*

Probab=95.92  E-value=0.025  Score=47.07  Aligned_cols=55  Identities=29%  Similarity=0.453  Sum_probs=46.1

Q ss_pred             EEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeee
Q 043271           11 ITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQ   68 (385)
Q Consensus        11 itI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eq   68 (385)
                      .+++|.|.+--.+||.|.|||.|.-- .-|+  ||+|+|++..++-|-++..|..+..
T Consensus         3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~p~g~~it~~Wna~~s~s   57 (107)
T 3ndz_E            3 VEVTYAITNSWGSGASVNVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVAS   57 (107)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEE
T ss_pred             cEEEEEEcccCCCCEEEEEEEEeCCC-Cccc--CcEEEEEcCCCCEEecccceEEEec
Confidence            57899998888999999999999742 3355  9999999999999999999876643

>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A

Probab=94.41  E-value=0.1  Score=43.26  Aligned_cols=59  Identities=22%  Similarity=0.403  Sum_probs=47.2

Q ss_pred             CCCCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271            7 PYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus         7 p~GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      +.|-.+++|. .+.-.+||.|.|+|.|.-- .-|+  ||+|.|+...++-|-++..|..+..|
T Consensus         4 ~~~~c~v~y~-~~~W~~Gf~~~vtVtN~g~-~~i~--gWtv~~~~~~g~~i~~~Wna~~s~sG   62 (110)
T 1exg_A            4 GPAGCQVLWG-VNQWNTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSG   62 (110)
T ss_dssp             CCCCEEEECC-EEESSSEEEEEEEEEECSS-SCEE--SEEEEEECSSSCEEEEEESSEEEEET
T ss_pred             CCCcEEEEEE-eCCCCCCEEEEEEEEeCCC-Cccc--ceEEEEEcCCCcEEecccceEEEccC
Confidence            3477899998 6666899999999999642 2355  99999999999888888888766533

>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A

Probab=93.65  E-value=0.022  Score=45.87  Aligned_cols=50  Identities=18%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             EEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271           12 TVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus        12 tI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      +.+|.|.+.-++||.|.|+|.|      +  .||+|.|++..++=|-++..|..+..|
T Consensus         4 ta~y~v~~~W~~Gf~~~vtVtn------~--~gWtv~~~~~~g~~i~~~Wn~~~s~sg   53 (87)
T 1e5b_A            4 SVTATRAEEWSDGFNVTYSVSG------S--SAWTVNLALNGSQTIQASWNANVTGSG   53 (87)
T ss_dssp             CCBCCBCCCCSSEEEEEEBCCS------C--SSCCCEEECCTTCCEEEEESBCCEESS
T ss_pred             EEEEEECccCCCCEEEEEEEEc------c--CceEEEEEcCCCCEEeeeeceeEecCC
Confidence            4567776666899999999998      3  499999999999988888888766544

>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A

Probab=92.50  E-value=0.39  Score=39.70  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=40.7

Q ss_pred             EEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271           13 VTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus        13 I~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      .+|.+-+| .+||.|.|||.|--    +  .||+|.|++..++=|-++..|..+..+
T Consensus        12 c~y~~n~W-~~Gf~~~vtVtN~g----~--~gWtv~~~~~~g~~it~~Wna~~s~sg   61 (103)
T 2cwr_A           12 LEVKVNDW-GSGAEYDVTLNLDG----Q--YDWTVKVKLAPGATVGSFWSANKQEGN   61 (103)
T ss_dssp             EEEEEEEC-SSEEEEEEEEEESS----C--CCCEEEEEECTTCEEEEEESEEEEEET
T ss_pred             EEEEECCC-CCceEEEEEEeCCC----C--CcEEEEEECCCCcEEecccceEEecCC
Confidence            36765555 79999999999983    3  499999999999989999888877544

>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C

Probab=88.37  E-value=0.13  Score=41.44  Aligned_cols=53  Identities=13%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             CCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271            9 GNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus         9 GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      |--+++|.|.+.=.+||.|.|||.     + +  .||+|.|++..++=|-++..|..+..+
T Consensus         2 g~Ctaty~~~n~W~~Gf~a~vtVt-----g-~--~gWtv~~~~~~gq~vt~~Wna~~s~sg   54 (88)
T 1heh_C            2 GSCSVSAVRGEEWADRFNVTYSVS-----G-S--SSWVVTLGLNGGQSVQSSWNAALTGSS   54 (88)
T ss_dssp             CCCCCCCCCCSBCSSEEEEEEECS-----S-C--CSCCCEEECCSSCCCCCEESSEEECSS
T ss_pred             CceEEEEEEcccCCCceEEEEEEe-----c-c--ccEEEEEECCCCCEEEccccccCccCC
Confidence            345667777666689999999997     3 3  599999999999988888888766533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1exha_	110	b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase,	0.003

>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Length = 110

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 9  GNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQ 68
              V + ++QW N G+ A VT++N          GW + +++   + +     +  T+ 
Sbjct: 6  AGCQVLWGVNQW-NTGFTANVTVKNTSSA---PVDGWTLTFSFPSGQQVTQAWSSTVTQS 61

Query: 69 GN 70
          G+
Sbjct: 62 GS 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1exha_	110	Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce	96.95
d1hehc_	88	Endo-1,4-beta xylanase D, xylan binding domain, XB	94.79
d1e5ba_	87	Endo-1,4-beta xylanase D, xylan binding domain, XB	93.86

>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=96.95  E-value=0.00096  Score=53.93  Aligned_cols=59  Identities=25%  Similarity=0.564  Sum_probs=49.6

Q ss_pred             CCCCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeec
Q 043271            7 PYGNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQG   69 (385)
Q Consensus         7 p~GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqg   69 (385)
                      ..+-.+++|-+-+| .+||.|.|||.|.-. .-|+  ||+|+|++..+|-|-++.+|..+..|
T Consensus         4 ~p~~c~v~y~~n~W-~~Gf~~~vtVtN~~~-~~~~--gW~v~~~~p~g~~i~~~Wna~~~~~G   62 (110)
T d1exha_           4 GPAGCQVLWGVNQW-NTGFTANVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSG   62 (110)
T ss_dssp             CCCCEEEECCEEEC-SSCEEEEEEEEECSS-SCEE--SEEEEEECSSCCEEEEEESSEEEEET
T ss_pred             CCcceEEEEEEccC-CCCcEEEEEEEeCCC-Cccc--CcEEEEECCCCCEEeeeeceEEEecC
Confidence            34668999988766 789999999999875 5565  99999999999999999999876544

>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Endo-1,4-beta xylanase D, xylan binding domain, XBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=94.79  E-value=0.0034  Score=49.07  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=45.1

Q ss_pred             CCEEEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeecC
Q 043271            9 GNITVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGN   70 (385)
Q Consensus         9 GnitI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqgd   70 (385)
                      |..+.+|.|.+-=.+||.|+|+|.|.      .  ||+|.|+...++-|-++.+|.-+.++.
T Consensus         2 g~Ctaty~v~~~W~~Gf~a~vtVtn~------s--gWtv~~t~p~g~~i~~~Wna~~s~sg~   55 (88)
T d1hehc_           2 GSCSVSAVRGEEWADRFNVTYSVSGS------S--SWVVTLGLNGGQSVQSSWNAALTGSSG   55 (88)
T ss_dssp             CCCCCCCCCCSBCSSEEEEEEECSSC------C--SCCCEEECCSSCCCCCEESSEEECSSS
T ss_pred             CceEEEEEecccCCCCeEEEEEEEeC------C--CCEEEEECCCCCEEEccccceEccCCC
Confidence            56677888877779999999999984      3  999999999999999998887665443

>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Endo-1,4-beta xylanase D, xylan binding domain, XBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=93.86  E-value=0.0083  Score=46.71  Aligned_cols=51  Identities=18%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             EEEEEEEEeeCCCeEEEEEEecCccccccCCCCCeeeEEEcCCeeEEeecCceeeeecC
Q 043271           12 TVTFDIHQWTNDGYVARVTIQNYHQYRHVDQPGWKIGWTWADNEIILSMSGAFATEQGN   70 (385)
Q Consensus        12 tI~wDV~~~~~~~Y~A~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~eqgd   70 (385)
                      +.+|-+.+--++||.|+|||.|      ++  ||+|.|+...++-|-++.+|..+..|.
T Consensus         4 taty~~~~~W~~Gf~a~vtVtn------~~--gWtv~~~~~~g~~I~~~Wn~~~s~sG~   54 (87)
T d1e5ba_           4 SVTATRAEEWSDGFNVTYSVSG------SS--AWTVNLALNGSQTIQASWNANVTGSGS   54 (87)
T ss_dssp             CCBCCBCCCCSSEEEEEEBCCS------CS--SCCCEEECCTTCCEEEEESBCCEESSS
T ss_pred             EEEEEEeccCCCCEEEEEEEEe------cC--CCEEEEECCCCCEEEcccceEEecCCC
Confidence            4456666666899999999988      33  999999999999999999998776543