Citrus Sinensis ID: 043283

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------

MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

ccccccHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHcccccccccHHHHcccccccccccEEEEEcccccccccccccEEEEccccccccccccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccc

ccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHcccccHHHHccccccccEEEccEEEEEcccccHHHccccEEEEEEccccHHHHHHHHHHHcccccccccEEEccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccc

MGFLKNPEAFLRVLQTVLHTTTYRFVLFtagyepldtairvmapgtssiLTQRVITQYGisifdgklfcfsgmvpykylfpRCVAAIHHGGSFLIEFQEWFLDIVfnrdsfslMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIaerisvedgvseAVKNlkeemglf

MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

*******EAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKEC****************************

*GFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAP**SS*L**RVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

*GFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEMGLF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		186	2.2.26 [Sep-21-2011]
Q9Y751		1211	Sterol 3-beta-glucosyltra	no	no	0.661	0.101	0.280	4e-05

>sp\|Q9Y751\|ATG26_PICPG Sterol 3-beta-glucosyltransferase OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=ATG26 PE=3 SV=1	Back alignment and function desciption

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 16/139 (11%)

Query: 51   TQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIEFQEWFLDIVFNRDS 110
            + R+  Q G+ +   +    SG VP+ +LF +  A++HHGGS                  
Sbjct: 1050 SDRLGKQTGVEVELPEEIYNSGNVPHDWLFGKIDASVHHGGSGTT-------GATLRAGI 1102

Query: 111  FSLMLPFVDALFALLCICYNVDDTSI-----KEAAEALSQAI-QYALSPRVKECEKEIAE 164
             +++ PF    F        V+D  +     K  +++LS+AI +   + R+ E  KEI +
Sbjct: 1103 PTIIKPFFGDQF---FYANRVEDIGVGIGLRKLNSKSLSKAIKEVTTNTRIIEKAKEIGK 1159

Query: 165  RISVEDGVSEAVKNLKEEM 183
            +I  E+GVS A++ L +EM
Sbjct: 1160 QIQSENGVSAAIRCLYQEM 1178

Involved in the biosynthesis of sterol glucoside. Involved in the invagination of peroxisomes into the vacuole for their degradation in both glucose-induced micropexophagy and ethanol-induced macropexophagy.
Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 7EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		186
359486084		599	PREDICTED: sterol 3-beta-glucosyltransfe	0.967	0.300	0.505	5e-41
298204592		506	unnamed protein product [Vitis vinifera]	0.967	0.355	0.505	5e-41
224070555		196	predicted protein [Populus trichocarpa]	0.967	0.918	0.487	1e-39
255575420		512	conserved hypothetical protein [Ricinus	0.967	0.351	0.446	1e-37
297812673		522	hypothetical protein ARALYDRAFT_910517 [	0.973	0.346	0.445	1e-35
356528787		528	PREDICTED: sterol 3-beta-glucosyltransfe	0.919	0.323	0.454	5e-35
42568071		520	sterol glucosyltransferase-like protein	0.967	0.346	0.451	7e-34
357140154		522	PREDICTED: sterol 3-beta-glucosyltransfe	0.919	0.327	0.391	6e-31
297720981		201	Os02g0210800 [Oryza sativa Japonica Grou	0.913	0.845	0.373	2e-29
308081226		532	uncharacterized protein LOC100501651 [Ze	0.951	0.332	0.389	3e-28

>gi\|359486084\|ref\|XP_002273501.2\| PREDICTED: sterol 3-beta-glucosyltransferase-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/196 (50%), Positives = 123/196 (62%), Gaps = 16/196 (8%)

Query: 1   MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGI 60
           MGFL+NP  FL+V+ TVL  T YRF+LF+AGYEPLD A++V+A   SS L +R  ++ GI
Sbjct: 399 MGFLRNPREFLQVILTVLDITNYRFILFSAGYEPLDAAVKVIAAEASSSLERRQSSEDGI 458

Query: 61  SIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGS-------------FLIEFQEWFLDIVFN 107
            +F G+LFCFSG + Y +LFPRC AAIHHGGS              L  F    LD  + 
Sbjct: 459 FLFGGRLFCFSGTISYNWLFPRCSAAIHHGGSGSTAAALKAGIPQVLCPF---MLDQFYW 515

Query: 108 RDSFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERIS 167
            +    +    + L          D TSI+EAA  LS+AI YALSP+VK    EIAERIS
Sbjct: 516 AERMFWLGVAPEPLKRNHLFPDKNDGTSIREAAVVLSRAIDYALSPKVKARASEIAERIS 575

Query: 168 VEDGVSEAVKNLKEEM 183
           +EDGVSEAVK LKEE+
Sbjct: 576 LEDGVSEAVKILKEEI 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|298204592\|emb\|CBI23867.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224070555\|ref\|XP_002303169.1\| predicted protein [Populus trichocarpa] gi\|222840601\|gb\|EEE78148.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255575420\|ref\|XP_002528612.1\| conserved hypothetical protein [Ricinus communis] gi\|223531957\|gb\|EEF33770.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297812673\|ref\|XP_002874220.1\| hypothetical protein ARALYDRAFT_910517 [Arabidopsis lyrata subsp. lyrata] gi\|297320057\|gb\|EFH50479.1\| hypothetical protein ARALYDRAFT_910517 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356528787\|ref\|XP_003532979.1\| PREDICTED: sterol 3-beta-glucosyltransferase-like [Glycine max]	Back alignment and taxonomy information

>gi\|42568071\|ref\|NP_568452.2\| sterol glucosyltransferase-like protein [Arabidopsis thaliana] gi\|332005971\|gb\|AED93354.1\| sterol glucosyltransferase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357140154\|ref\|XP_003571635.1\| PREDICTED: sterol 3-beta-glucosyltransferase-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|297720981\|ref\|NP_001172853.1\| Os02g0210800 [Oryza sativa Japonica Group] gi\|255670713\|dbj\|BAH91582.1\| Os02g0210800, partial [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|308081226\|ref\|NP_001183260.1\| uncharacterized protein LOC100501651 [Zea mays] gi\|238010378\|gb\|ACR36224.1\| unknown [Zea mays] gi\|413936800\|gb\|AFW71351.1\| putative acetate/butyrate kinase domain protein [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		186
TAIR\|locus:2184570		520	AT5G24750 [Arabidopsis thalian	0.973	0.348	0.458	2e-33

TAIR\|locus:2184570 AT5G24750 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 89/194 (45%), Positives = 126/194 (64%)

Query:     1 MGFLKNPEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGI 60
             MGF+++P AFLRVLQ+V+  T YRF++FTA Y PLD AIR +A G+ S  +++     GI
Sbjct:   319 MGFVRDPIAFLRVLQSVIQITGYRFIIFTASYGPLDAAIRTIANGSDS--SEKQPLHAGI 376

Query:    61 SIFDGKLFCFSGMVPYKYLFPRCVAAIHHGGSFLIE--FQEWFLDIV--FNRDSF--SLM 114
             SIF+GKLFCFSGMVPY ++F  C AAIHHGGS  +    Q     I+  F  D F  +  
Sbjct:   377 SIFNGKLFCFSGMVPYNWMFRTCAAAIHHGGSGSVAAALQAGIPQIICPFMLDQFYWAEK 436

Query:   115 LPFVD-ALFAL----LCICYNVDDTSIKEAAEALSQAIQYALSPRVKECEKEIAERISVE 169
             + ++  A   L    L +  + D+ +I EAA+ +++AI  ALS + +    EIAE +S+E
Sbjct:   437 MSWLGVAPQPLKRNHLLLEDSNDEKNITEAAQVVAKAIYDALSAKTRARAMEIAEILSLE 496

Query:   170 DGVSEAVKNLKEEM 183
             DGV+EAV+ L+EE+
Sbjct:   497 DGVTEAVRVLREEV 510


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       186   0.00083  110 3  11 22  0.36    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.58u 0.11s 16.69t   Elapsed:  00:00:01
  Total cpu time:  16.58u 0.11s 16.69t   Elapsed:  00:00:01
  Start:  Thu May  9 18:06:40 2013   End:  Thu May  9 18:06:41 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026582001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (474 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025143001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (188 aa)	•	0.506
	GSVIVG00025145001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (152 aa)	•	0.498

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		186
PHA03392		507	egt ecdysteroid UDP-glucosyltransferase; Provision	99.92
COG1819		406	Glycosyl transferases, related to UDP-glucuronosyl	99.91
PF00201		500	UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera	99.89
cd03784		401	GT1_Gtf_like This family includes the Gtfs, a grou	99.86
TIGR01426		392	MGT glycosyltransferase, MGT family. This model de	99.82
PLN02670		472	transferase, transferring glycosyl groups	99.71
PLN02562		448	UDP-glycosyltransferase	99.71
PLN02554		481	UDP-glycosyltransferase family protein	99.7
PLN02167		475	UDP-glycosyltransferase family protein	99.65
PLN02210		456	UDP-glucosyl transferase	99.65
PLN02448		459	UDP-glycosyltransferase family protein	99.64
PLN02863		477	UDP-glucoronosyl/UDP-glucosyl transferase family p	99.61
PLN02410		451	UDP-glucoronosyl/UDP-glucosyl transferase family p	99.58
PLN03007		482	UDP-glucosyltransferase family protein	99.57
PLN03004		451	UDP-glycosyltransferase	99.57
KOG1192		496	consensus UDP-glucuronosyl and UDP-glucosyl transf	99.57
PLN02207		468	UDP-glycosyltransferase	99.57
PLN02555		480	limonoid glucosyltransferase	99.56
PLN00164		480	glucosyltransferase; Provisional	99.52
PLN02764		453	glycosyltransferase family protein	99.52
PLN00414		446	glycosyltransferase family protein	99.51
PLN02208		442	glycosyltransferase family protein	99.49
PLN02992		481	coniferyl-alcohol glucosyltransferase	99.49
PLN02152		455	indole-3-acetate beta-glucosyltransferase	99.48
PLN02173		449	UDP-glucosyl transferase family protein	99.41
PLN02534		491	UDP-glycosyltransferase	99.3
PLN03015		470	UDP-glucosyl transferase	99.29
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	98.68
PRK12446		352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	98.58
PF04101		167	Glyco_tran_28_C: Glycosyltransferase family 28 C-t	98.58
TIGR00661		321	MJ1255 conserved hypothetical protein. This model	98.4
PF13528		318	Glyco_trans_1_3: Glycosyl transferase family 1	98.32
cd03785		350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	97.86
COG0707		357	MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami	97.64
TIGR01133		348	murG undecaprenyldiphospho-muramoylpentapeptide be	97.64
PRK13609		380	diacylglycerol glucosyltransferase; Provisional	97.02
PRK13608		391	diacylglycerol glucosyltransferase; Provisional	96.15
PLN02605		382	monogalactosyldiacylglycerol synthase	95.88
cd03814		364	GT1_like_2 This family is most closely related to	95.66
TIGR03590		279	PseG pseudaminic acid biosynthesis-associated prot	95.29
COG4671		400	Predicted glycosyl transferase [General function p	93.84
cd03823		359	GT1_ExpE7_like This family is most closely related	93.49
cd03795		357	GT1_like_4 This family is most closely related to	92.75
TIGR00236		365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	91.7
TIGR03492		396	conserved hypothetical protein. This protein famil	91.33
PRK00025		380	lpxB lipid-A-disaccharide synthase; Reviewed	91.16
cd03821		375	GT1_Bme6_like This family is most closely related	90.13
cd05844		367	GT1_like_7 Glycosyltransferases catalyze the trans	90.06
cd03804		351	GT1_wbaZ_like This family is most closely related	89.74
cd04962		371	GT1_like_5 This family is most closely related to	89.71
cd03822		366	GT1_ecORF704_like This family is most closely rela	89.37
cd03801		374	GT1_YqgM_like This family is most closely related	89.25
PRK15484		380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	88.93
TIGR00215		385	lpxB lipid-A-disaccharide synthase. Lipid-A precur	88.85
TIGR03449		405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	88.12
cd03820		348	GT1_amsD_like This family is most closely related	87.64
cd03794		394	GT1_wbuB_like This family is most closely related	87.13
cd03817		374	GT1_UGDG_like This family is most closely related	86.52
PLN02871		465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	85.64
cd03800		398	GT1_Sucrose_synthase This family is most closely r	85.54
TIGR03087		397	stp1 sugar transferase, PEP-CTERM/EpsH1 system ass	84.84
cd03798		377	GT1_wlbH_like This family is most closely related	84.57
cd03825		365	GT1_wcfI_like This family is most closely related	81.44
PRK15427		406	colanic acid biosynthesis glycosyltransferase WcaL	80.17

>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional	Back alignment and domain information

Probab=99.92  E-value=5.4e-25  Score=203.63  Aligned_cols=137  Identities=15%  Similarity=0.169  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHCCceEEEeeCCCCCChhhhhhcCCCCCchhhhhhhhcccccccCCCeeEEccccCccccc--cccc
Q 043283            7 PEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLF--PRCV   84 (186)
Q Consensus         7 p~~~~~~~~~Al~~~~~r~Il~t~G~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~nvv~~~~~vP~~~Ll--p~~~   84 (186)
                      |.++++.+++|++++++|+|| +.+ ++...                       ..+|+|+ ++.+|+||.+||  |+|+
T Consensus       313 ~~~~~~~~l~a~~~l~~~viw-~~~-~~~~~-----------------------~~~p~Nv-~i~~w~Pq~~lL~hp~v~  366 (507)
T PHA03392        313 DNEFLQMLLRTFKKLPYNVLW-KYD-GEVEA-----------------------INLPANV-LTQKWFPQRAVLKHKNVK  366 (507)
T ss_pred             CHHHHHHHHHHHHhCCCeEEE-EEC-CCcCc-----------------------ccCCCce-EEecCCCHHHHhcCCCCC
Confidence            788999999999999999999 322 11110                       0147895 899999999999  7899


Q ss_pred             EEEecCCCCcee--ee--------eccccchhhHh--hhcCccccccccccccccccCCCCchhhHHHHHHHHHHHHhh-
Q 043283           85 AAIHHGGSFLIE--FQ--------EWFLDIVFNRD--SFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYAL-  151 (186)
Q Consensus        85 a~IhHGG~gTt~--l~--------P~~~DQ~~~a~--~~~G~G~~~~~l~~~~~tp~~~~~~~~~~~~~~L~~ai~~~l-  151 (186)
                      +||||||.||++  ++        |+++||+.||+  ++.|+|+.   ++..+++            .++|.+||++++ 
T Consensus       367 ~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~---l~~~~~t------------~~~l~~ai~~vl~  431 (507)
T PHA03392        367 AFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRA---LDTVTVS------------AAQLVLAIVDVIE  431 (507)
T ss_pred             EEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEE---eccCCcC------------HHHHHHHHHHHhC
Confidence            999999999999  44        99999999999  99999999   8888888            799999999999 


Q ss_pred             CHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHhc
Q 043283          152 SPRVKECEKEIAERISVED--GVSEAVKNLKEEMG  184 (186)
Q Consensus       152 ~~~~~~~A~~l~~~~~~~~--g~~~av~~ie~~l~  184 (186)
                      |++||++|+++++.+++++  +.++|++|+|.+++
T Consensus       432 ~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r  466 (507)
T PHA03392        432 NPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIR  466 (507)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999875  99999999998874

>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule	Back alignment and domain information

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin	Back alignment and domain information

>TIGR01426 MGT glycosyltransferase, MGT family	Back alignment and domain information

>PLN02670 transferase, transferring glycosyl groups	Back alignment and domain information

>PLN02562 UDP-glycosyltransferase	Back alignment and domain information

>PLN02554 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN02167 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN02210 UDP-glucosyl transferase	Back alignment and domain information

>PLN02448 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN03007 UDP-glucosyltransferase family protein	Back alignment and domain information

>PLN03004 UDP-glycosyltransferase	Back alignment and domain information

>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]	Back alignment and domain information

>PLN02207 UDP-glycosyltransferase	Back alignment and domain information

>PLN02555 limonoid glucosyltransferase	Back alignment and domain information

>PLN00164 glucosyltransferase; Provisional	Back alignment and domain information

>PLN02764 glycosyltransferase family protein	Back alignment and domain information

>PLN00414 glycosyltransferase family protein	Back alignment and domain information

>PLN02208 glycosyltransferase family protein	Back alignment and domain information

>PLN02992 coniferyl-alcohol glucosyltransferase	Back alignment and domain information

>PLN02152 indole-3-acetate beta-glucosyltransferase	Back alignment and domain information

>PLN02173 UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN02534 UDP-glycosyltransferase	Back alignment and domain information

>PLN03015 UDP-glucosyl transferase	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	Back alignment and domain information

>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR00661 MJ1255 conserved hypothetical protein	Back alignment and domain information

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1	Back alignment and domain information

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis	Back alignment and domain information

>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Back alignment and domain information

>PRK13609 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>PRK13608 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>PLN02605 monogalactosyldiacylglycerol synthase	Back alignment and domain information

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG	Back alignment and domain information

>COG4671 Predicted glycosyl transferase [General function prediction only]	Back alignment and domain information

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase	Back alignment and domain information

>TIGR03492 conserved hypothetical protein	Back alignment and domain information

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional	Back alignment and domain information

>TIGR00215 lpxB lipid-A-disaccharide synthase	Back alignment and domain information

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	Back alignment and domain information

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	Back alignment and domain information

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		186
3h4t_A		404	Glycosyltransferase GTFA, glycosyltransferase; van	1e-07
1rrv_A		416	Glycosyltransferase GTFD; GT-B, glycosyltransferas	4e-07
1iir_A		415	Glycosyltransferase GTFB; rossmann fold; 1.80A {Am	1e-06
4fzr_A		398	SSFS6; structural genomics, PSI-biology, protein s	8e-04

>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* Length = 404	Back alignment and structure

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 16/166 (9%)

Query: 26  VLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFD----GKLFCFSGMVPYKYLFP 81
           V    G  P       +A        +RV+   G +       G      G V ++ LF 
Sbjct: 224 VYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLFG 283

Query: 82  RCVAAIHHG--GSFLIEFQEWFLDIV--FNRDSFSLMLPFVDALFALLCICYNVDDTSIK 137
           R  A +HHG  G+     +     +V     D      P+     A L +    D  +  
Sbjct: 284 RVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQ-----PYYAGRVADLGVGVAHDGPTPT 338

Query: 138 EAAEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEM 183
              E+LS A+  AL+P ++     +A  I   DG + A K L E +
Sbjct: 339 --VESLSAALATALTPGIRARAAAVAGTIR-TDGTTVAAKLLLEAI 381

PyMOL of 3h4t

>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Length = 416	Back alignment and structure

>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Length = 415	Back alignment and structure

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Length = 398	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		186
4amg_A		400	Snogd; transferase, polyketide biosynthesis, GT1 f	99.87
3h4t_A		404	Glycosyltransferase GTFA, glycosyltransferase; van	99.85
2iya_A		424	OLEI, oleandomycin glycosyltransferase; carbohydra	99.79
2p6p_A		384	Glycosyl transferase; X-RAY-diffraction,urdamycina	99.79
2yjn_A		441	ERYCIII, glycosyltransferase; transferase, cytochr	99.79
1rrv_A		416	Glycosyltransferase GTFD; GT-B, glycosyltransferas	99.78
1iir_A		415	Glycosyltransferase GTFB; rossmann fold; 1.80A {Am	99.78
2vch_A		480	Hydroquinone glucosyltransferase; glycosyltransfer	99.78
3rsc_A		415	CALG2; TDP, enediyne, structural genomics, PSI-2,	99.75
2o6l_A		170	UDP-glucuronosyltransferase 2B7; drug metabolism,	99.74
4fzr_A		398	SSFS6; structural genomics, PSI-biology, protein s	99.73
2pq6_A		482	UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl	99.72
3ia7_A		402	CALG4; glycosysltransferase, calicheamicin, enediy	99.72
3hbf_A		454	Flavonoid 3-O-glucosyltransferase; glycosyltransfe	99.72
3oti_A		398	CALG3; calicheamicin, TDP, structural genomics, PS	99.71
2c1x_A		456	UDP-glucose flavonoid 3-O glycosyltransferase; WIN	99.7
3tsa_A		391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	99.7
2acv_A		463	Triterpene UDP-glucosyl transferase UGT71G1; glyco	99.65
2iyf_A		430	OLED, oleandomycin glycosyltransferase; antibiotic	99.61
3otg_A		412	CALG1; calicheamicin, TDP, structural genomics, PS	99.55
3s2u_A		365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	99.06
1f0k_A		364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	98.44
2jzc_A		224	UDP-N-acetylglucosamine transferase subunit ALG13;	98.11
2f9f_A		177	First mannosyl transferase (WBAZ-1); alpha-beta pr	96.09
3hbm_A		282	UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je	96.07
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	95.76
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	94.76
2iuy_A		342	Avigt4, glycosyltransferase; antibiotics, family G	94.26
1v4v_A		376	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t	93.95
1vgv_A		384	UDP-N-acetylglucosamine 2-epimerase; structural ge	93.66
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	92.94
3ot5_A		403	UDP-N-acetylglucosamine 2-epimerase; structural ge	92.01
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	91.27
3dzc_A		396	UDP-N-acetylglucosamine 2-epimerase; structural ge	90.24
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	90.14
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	89.62
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	89.43
3beo_A		375	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a	89.04
3fro_A		439	GLGA glycogen synthase; glycosyltransferase family	86.74
3oy2_A		413	Glycosyltransferase B736L; rossmann fold, GDP-mann	83.78
3qhp_A		166	Type 1 capsular polysaccharide biosynthesis prote	81.37

>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*	Back alignment and structure

Probab=99.87  E-value=1.2e-22  Score=174.53  Aligned_cols=133  Identities=22%  Similarity=0.121  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHCCceEEEeeCCCCCChhhhhhcCCCCCchhhhhhhhcccccccCCCeeEEccccCcccccccccEEEe
Q 043283            9 AFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAAIH   88 (186)
Q Consensus         9 ~~~~~~~~Al~~~~~r~Il~t~G~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~nvv~~~~~vP~~~Llp~~~a~Ih   88 (186)
                      ..+..+.++++..+.++|+. .++...+.                      ...+|+|+ ++.+|+||.++|++|++|||
T Consensus       255 ~~~~~~~~~l~~~~~~~v~~-~~~~~~~~----------------------~~~~~~~v-~~~~~~p~~~lL~~~~~~v~  310 (400)
T 4amg_A          255 AKLAPLFSEVADVDAEFVLT-LGGGDLAL----------------------LGELPANV-RVVEWIPLGALLETCDAIIH  310 (400)
T ss_dssp             STTHHHHHHGGGSSSEEEEE-CCTTCCCC----------------------CCCCCTTE-EEECCCCHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhhccCceEEEE-ecCccccc----------------------cccCCCCE-EEEeecCHHHHhhhhhheec
Confidence            55777889999999999995 44443221                      12358894 99999999999999999999


Q ss_pred             cCCCCcee--ee--------eccccchhhHh--hhcCccccccccccccccccCCCCchhhHHHHHHHHHHHHhh-CHHH
Q 043283           89 HGGSFLIE--FQ--------EWFLDIVFNRD--SFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYAL-SPRV  155 (186)
Q Consensus        89 HGG~gTt~--l~--------P~~~DQ~~~a~--~~~G~G~~~~~l~~~~~tp~~~~~~~~~~~~~~L~~ai~~~l-~~~~  155 (186)
                      |||.||++  ++        |++.||+.||+  ++.|+|..   ++..+.+            +    ++|+++| |++|
T Consensus       311 h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~---l~~~~~~------------~----~al~~lL~d~~~  371 (400)
T 4amg_A          311 HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFD---AEAGSLG------------A----EQCRRLLDDAGL  371 (400)
T ss_dssp             CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEE---CCTTTCS------------H----HHHHHHHHCHHH
T ss_pred             cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEE---cCCCCch------------H----HHHHHHHcCHHH
Confidence            99999998  54        88999999999  99999999   7765555            3    4677888 9999


Q ss_pred             HHHHHHHHHHhhcCCcHHHHHHHHHHHhc
Q 043283          156 KECEKEIAERISVEDGVSEAVKNLKEEMG  184 (186)
Q Consensus       156 ~~~A~~l~~~~~~~~g~~~av~~ie~~l~  184 (186)
                      |++|+++++++++++|++++++.||++.+
T Consensus       372 r~~a~~l~~~~~~~~~~~~~a~~le~lAG  400 (400)
T 4amg_A          372 REAALRVRQEMSEMPPPAETAAXLVALAG  400 (400)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhC
Confidence            99999999999999999999999998643

PyMOL of 4amg

>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*	Back alignment and structure

>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}	Back alignment and structure

>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}	Back alignment and structure

>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}	Back alignment and structure

>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5	Back alignment and structure

>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5	Back alignment and structure

>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*	Back alignment and structure

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*	Back alignment and structure

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}	Back alignment and structure

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*	Back alignment and structure

>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10	Back alignment and structure

>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}	Back alignment and structure

>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*	Back alignment and structure

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*	Back alignment and structure

>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*	Back alignment and structure

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*	Back alignment and structure

>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*	Back alignment and structure

>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}	Back alignment and structure

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*	Back alignment and structure

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*	Back alignment and structure

>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A	Back alignment and structure

>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8	Back alignment and structure

>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*	Back alignment and structure

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*	Back alignment and structure

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*	Back alignment and structure

>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3	Back alignment and structure

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*	Back alignment and structure

>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*	Back alignment and structure

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*	Back alignment and structure

>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A	Back alignment and structure

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*	Back alignment and structure

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*	Back alignment and structure

>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		186
d1pn3a_		391	c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA	0.003
d1iira_		401	c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycol	0.004

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Length = 391	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 140 AEALSQAIQYALSPRVKECEKEIAERISVEDGVSEAVKNLKEEM 183
            ++LS A+  AL+P ++     +A+ I   DG + A + L + +
Sbjct: 345 IDSLSAALDTALAPEIRARATTVADTIR-ADGTTVAAQLLFDAV 387

PyMOL of d1pn3a_

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Length = 401	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		186
d1rrva_		401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	99.9
d2pq6a1		473	(Iso)flavonoid glycosyltransferase {Medicago trunc	99.89
d1iira_		401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	99.88
d2c1xa1		450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	99.88
d1pn3a_		391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	99.86
d2acva1		461	Triterpene UDP-glucosyl transferase UGT71G1 {Medic	99.85
d2vcha1		471	Hydroquinone glucosyltransferase {Thale cress (Ara	99.85
d1f0ka_		351	Peptidoglycan biosynthesis glycosyltransferase Mur	99.0
d2bfwa1		196	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	82.87
d2iw1a1		370	Lipopolysaccharide core biosynthesis protein RfaG	81.28

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=99.90  E-value=4.7e-24  Score=178.34  Aligned_cols=137  Identities=19%  Similarity=0.147  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHCCceEEEeeCCCCCChhhhhhcCCCCCchhhhhhhhcccccccCCCeeEEccccCcccccccccEE
Q 043283            7 PEAFLRVLQTVLHTTTYRFVLFTAGYEPLDTAIRVMAPGTSSILTQRVITQYGISIFDGKLFCFSGMVPYKYLFPRCVAA   86 (186)
Q Consensus         7 p~~~~~~~~~Al~~~~~r~Il~t~G~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~nvv~~~~~vP~~~Llp~~~a~   86 (186)
                      +..+.+.+.++++..+.++++. .++.+...                       ..+|+|+ ++.+|+||.++|++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~v-~~~~~~p~~~ll~~~~~~  306 (401)
T d1rrva_         252 IADAAKVAVEAIRAQGRRVILS-RGWTELVL-----------------------PDDRDDC-FAIDEVNFQALFRRVAAV  306 (401)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEE-CTTTTCCC-----------------------SCCCTTE-EEESSCCHHHHGGGSSEE
T ss_pred             HHHHHHHHHHHHhhcCCeEEEe-cccccccc-----------------------ccCCCCE-EEEeccCcHHHhhhccEE
Confidence            5678899999999999999994 44432221                       1257895 999999999999999999


Q ss_pred             EecCCCCcee--ee--------eccccchhhHh--hhcCccccccccccccccccCCCCchhhHHHHHHHHHHHHhhCHH
Q 043283           87 IHHGGSFLIE--FQ--------EWFLDIVFNRD--SFSLMLPFVDALFALLCICYNVDDTSIKEAAEALSQAIQYALSPR  154 (186)
Q Consensus        87 IhHGG~gTt~--l~--------P~~~DQ~~~a~--~~~G~G~~~~~l~~~~~tp~~~~~~~~~~~~~~L~~ai~~~l~~~  154 (186)
                      |||||.||+.  ++        |++.||+.||+  ++.|+|+.   ++..+++            ++.|+++|+++|+++
T Consensus       307 I~hgG~~t~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~G~g~~---l~~~~~~------------~~~L~~ai~~vl~~~  371 (401)
T d1rrva_         307 IHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVA---HDGPTPT------------FESLSAALTTVLAPE  371 (401)
T ss_dssp             EECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEE---CSSSCCC------------HHHHHHHHHHHTSHH
T ss_pred             EecCCchHHHHHHHhCCCEEEecccccHHHHHHHHHHCCCEEE---cCcCCCC------------HHHHHHHHHHHhCHH
Confidence            9999999999  55        89999999999  99999999   8888888            799999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHHhc
Q 043283          155 VKECEKEIAERISVEDGVSEAVKNLKEEMG  184 (186)
Q Consensus       155 ~~~~A~~l~~~~~~~~g~~~av~~ie~~l~  184 (186)
                      |+++|++++++++ ++|..+|++.||+.++
T Consensus       372 ~r~~a~~~~~~~~-~~g~~~aa~~ie~~~~  400 (401)
T d1rrva_         372 TRARAEAVAGMVL-TDGAAAAADLVLAAVG  400 (401)
T ss_dssp             HHHHHHHHTTTCC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hcCHHHHHHHHHHHhC
Confidence            9999999999886 5899999999999875

PyMOL of d1rrva_

>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}	Back information, alignment and structure

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure