Citrus Sinensis ID: 043314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAYS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcccccccccccccccccccccEEEEEEEcccccEEccccccccEEEEEHHHHccccccccccccEEEEccEEEEEEccEEEcccEEEEccccccccccEEEEEEEEccccccEEEEEEEEccEEEEEcccccccccccccccccEEEEcccccccccccHHHHcccccHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHcccccccEEEEEccEEEEEEccccEEEEEEEccEEEEccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccEEEEEEcccccccccccEEEccccccEEEEEEEccccEEEcccccccccEEccHHHHHHccEccccccccEEccEEEEEEEccEEEEcEEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHccccccccEEEEEcccEEEEEccEEEEEEEEEcccEcccHHHccHHHHHHHHc
Coil and Loop (DISEMBL)
spslyfqalepsslklnfskklslpiftgskitniesDHLQIVVVKtrsgsriapanlsqpiKILMVEEFESNIVKERTGKRLLLTGDVNvtikngvarvedieftdnsnwirsRKFRIGAKVAQWTYHGVRIREAITEAFVVKdhrgelykkhhppmledEVWRlgkigrggnfcGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHArtcsmgsklyifrgqnciIILNPICQVVRATingqtfltrdlpnlnglkrays
Flexible Loop (DISEMBL)
spslyfqalepsslklnfskKLSLPIFTgskitniesdhLQIVVVKtrsgsriapanlsqpikiLMVEEFESNIVKertgkrllltgdvnvtikngvarvedieftdnsnwirsrkfrigakvaqwtyhgVRIREAITEAFVVKDHRgelykkhhppmlEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLkvsivepqklrrilgtgmsekmWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINgqtfltrdlpnlnglkrays
Low Complexity Region (SEG)
SPSLYFQALEPsslklnfskklslPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAYS
Disordered region (IsUnstruct)
*************LKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPN*********
Disordered Region (DISOPRED)
***********SSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELY**H*PPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILG**MSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDL***********
Disordered Region (DISEMBL)
SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAYS
Disordered Region (DISPRO)
**SLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAYS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224133108	366	predicted protein [Populus trichocarpa]	0.974	0.726	0.607	4e-91
224121274	435	predicted protein [Populus trichocarpa]	0.974	0.611	0.596	4e-91
225455998	487	PREDICTED: uncharacterized protein LOC10	0.970	0.544	0.590	8e-87
297734237	469	unnamed protein product [Vitis vinifera]	0.970	0.565	0.590	1e-86
357521187	474	hypothetical protein MTR_8g104510 [Medic	0.996	0.573	0.553	5e-86
357521181	487	hypothetical protein MTR_8g104490 [Medic	0.996	0.558	0.550	1e-85
357521183	422	hypothetical protein MTR_8g104490 [Medic	0.996	0.644	0.550	3e-85
356524378	486	PREDICTED: uncharacterized protein LOC10	0.970	0.545	0.541	2e-82
356529562	489	PREDICTED: uncharacterized protein LOC10	0.985	0.550	0.540	3e-82
356513070	480	PREDICTED: uncharacterized protein LOC10	0.970	0.552	0.536	5e-82

>gi|224133108|ref|XP_002321484.1| predicted protein [Populus trichocarpa] gi|222868480|gb|EEF05611.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/285 (60%), Positives = 215/285 (75%), Gaps = 19/285 (6%)

Query: 1   SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQ 60
           S SL  +ALE SSL+L +SK L LPIFTGSKI +++S  LQI++V TR G ++ P  L  
Sbjct: 47  SSSLQIKALEASSLQLMYSKSLLLPIFTGSKIVDLDSSPLQILLVDTR-GDQMVPTYLPH 105

Query: 61  PIKILMV----------------EEFESNIVKERTGKRLLLTGD-VNVTIKNGVARVEDI 103
           P+KI +V                EEF+SNIVKERTGKR LL GD + VT+++G A + +I
Sbjct: 106 PLKIEVVVLDGDFPSNGSSKWTSEEFDSNIVKERTGKRPLLAGDCLTVTLRDGFAPIGEI 165

Query: 104 EFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEV 163
           EFTDNS+WIRSRKFR+GA+VA  +Y GV+IREAITEAFVVKDHRGELYKKHHPPML+DEV
Sbjct: 166 EFTDNSSWIRSRKFRLGARVAPGSYQGVKIREAITEAFVVKDHRGELYKKHHPPMLQDEV 225

Query: 164 WRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHART 222
           WRL KIG+ G F  KL A GI TVQDFLK+S+V+ QKLRRILG GMSEKMW+ T+KHART
Sbjct: 226 WRLEKIGKDGAFHRKLTAEGINTVQDFLKLSVVDRQKLRRILGPGMSEKMWEVTIKHART 285

Query: 223 CSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNG 267
           C +G+  +IFR  NC I LNPICQ+V A I+G ++  ++L ++ G
Sbjct: 286 CDLGNNHFIFRRPNCTITLNPICQIVHAMIDGNSYSNKELASIRG 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121274|ref|XP_002318542.1| predicted protein [Populus trichocarpa] gi|222859215|gb|EEE96762.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 170/285 (59%), Positives = 215/285 (75%), Gaps = 19/285 (6%)

Query: 1   SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQ 60
           SPSL  Q+LEPSSL+L FSK L LPIFTGSKI +++S  LQI++V TR G ++    L  
Sbjct: 75  SPSLRIQSLEPSSLQLMFSKNLLLPIFTGSKIVDLDSSPLQILLVDTR-GDQVVSTYLPH 133

Query: 61  PIKILMV----------------EEFESNIVKERTGKRLLLTGD-VNVTIKNGVARVEDI 103
           PIKI +V                EEF SNIVKER GKR LL GD ++VT+++G A + +I
Sbjct: 134 PIKIEVVVLDGDFPSYDNRTWTSEEFNSNIVKERKGKRPLLAGDCLSVTLRDGFAPIGEI 193

Query: 104 EFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEV 163
           EFTDNS+W+RSRKFR+GA+V   +Y GVRIREAITEAFVVKDHRGELYKKHHPPML+DEV
Sbjct: 194 EFTDNSSWVRSRKFRLGARVVPESYQGVRIREAITEAFVVKDHRGELYKKHHPPMLQDEV 253

Query: 164 WRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHART 222
           WRL KIG+ G F  KLA + I TVQDFLK+S+V+P++LR ILG GMSEKMW+ T+KHART
Sbjct: 254 WRLEKIGKDGAFHKKLATARIHTVQDFLKLSVVDPRRLREILGHGMSEKMWEVTIKHART 313

Query: 223 CSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNG 267
           C +G+K ++FR  NC I  +PICQ+V A I+G ++ +++LP+  G
Sbjct: 314 CDLGNKHFVFRRPNCTITFDPICQIVHAVIDGSSYSSKELPSKTG 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455998|ref|XP_002276900.1| PREDICTED: uncharacterized protein LOC100259493 [Vitis vinifera]

 Score =  326 bits (835), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 167/283 (59%), Positives = 204/283 (72%), Gaps = 18/283 (6%)

Query: 1   SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQ 60
           SPSL  QALE S+L+L F+K+LSLPIFTG+KI   E+  LQ+ +V+T SG ++ P  L  
Sbjct: 91  SPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIVET-SGDQMVPTTLPY 149

Query: 61  PIKILMV----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIE 104
            IK+ +V                +EFE NIV+ERTGKR LL GDV VT+++G+A + DIE
Sbjct: 150 SIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIE 209

Query: 105 FTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVW 164
           FTDNS+WIRSRKFR+GA+V   + H V IREAITEAF VKDHRGELYKKHHPPML DEVW
Sbjct: 210 FTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGELYKKHHPPMLNDEVW 269

Query: 165 RLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTC 223
           RL KIG+ G F  KLA+  I TVQD LK+SIV+PQKLR ILG GMSEKMW+  +KHAR C
Sbjct: 270 RLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGMSEKMWEVVIKHARNC 329

Query: 224 SMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLN 266
            +G  LYI RG N  + LN ICQ+V   INGQ +  ++L NL+
Sbjct: 330 DLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLD 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734237|emb|CBI15484.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/283 (59%), Positives = 204/283 (72%), Gaps = 18/283 (6%)

Query: 1   SPSLYFQALEPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQ 60
           SPSL  QALE S+L+L F+K+LSLPIFTG+KI   E+  LQ+ +V+T SG ++ P  L  
Sbjct: 73  SPSLRIQALEASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIVET-SGDQMVPTTLPY 131

Query: 61  PIKILMV----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIE 104
            IK+ +V                +EFE NIV+ERTGKR LL GDV VT+++G+A + DIE
Sbjct: 132 SIKVEIVVLDGDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIE 191

Query: 105 FTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVW 164
           FTDNS+WIRSRKFR+GA+V   + H V IREAITEAF VKDHRGELYKKHHPPML DEVW
Sbjct: 192 FTDNSSWIRSRKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGELYKKHHPPMLNDEVW 251

Query: 165 RLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTC 223
           RL KIG+ G F  KLA+  I TVQD LK+SIV+PQKLR ILG GMSEKMW+  +KHAR C
Sbjct: 252 RLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGMSEKMWEVVIKHARNC 311

Query: 224 SMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLN 266
            +G  LYI RG N  + LN ICQ+V   INGQ +  ++L NL+
Sbjct: 312 DLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLD 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521187|ref|XP_003630882.1| hypothetical protein MTR_8g104510 [Medicago truncatula] gi|355524904|gb|AET05358.1| hypothetical protein MTR_8g104510 [Medicago truncatula]

 Score =  323 bits (828), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 214/298 (71%), Gaps = 26/298 (8%)

Query: 1   SPSLYFQALE-PSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLS 59
           SPSL  + +E P SL+  F  KLSLPIFTGSKI +++ + + +++V  RS  ++ P +LS
Sbjct: 79  SPSLRLEGMEEPLSLQFMFKNKLSLPIFTGSKILDMDGNSISVILVD-RSNDQVVPTSLS 137

Query: 60  QPIKILMV-----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVED 102
            PIKI +V                 EEF ++IVKERTGKR LLTG++N+T+++G+A + D
Sbjct: 138 HPIKIEIVVLDGDFPPSKKESSWTSEEFNNSIVKERTGKRPLLTGELNLTMRDGIAPIGD 197

Query: 103 IEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDE 162
           IEFTDNS+WIRSRKFR+  ++A  T   VRI E +TEAFVVKDHRGELYKKHHPP L+DE
Sbjct: 198 IEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEAFVVKDHRGELYKKHHPPSLKDE 257

Query: 163 VWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHAR 221
           VWRL KIG+ G F  KL   GI TVQ+FLK+S+V+P +LR+ILG GMSEKMWD T+KHA+
Sbjct: 258 VWRLEKIGKDGAFHKKLTLEGITTVQEFLKLSVVDPLRLRKILGIGMSEKMWDVTIKHAK 317

Query: 222 TCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNL------NGLKRAYS 273
           TC MG+KLY++RG    I LN ICQ+VRA INGQT   RD+ N+      N ++ AY+
Sbjct: 318 TCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDICNMDKSYIQNYVREAYA 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521181|ref|XP_003630879.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524901|gb|AET05355.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/298 (55%), Positives = 212/298 (71%), Gaps = 26/298 (8%)

Query: 1   SPSLYFQALE-PSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLS 59
           SPSL  +A+E P S +  F KKLSLPIFTGS+I +++ + + +++V  +S  +I P +L 
Sbjct: 79  SPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGNSINVILVD-KSNDQIVPTSLP 137

Query: 60  QPIKILMV-----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVED 102
            PIKI +V                 EEF SNIVKER GKR LLTG++N+T+++G+A + D
Sbjct: 138 HPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGKRPLLTGELNLTMRDGIAPIGD 197

Query: 103 IEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDE 162
           IEFTDNS+WIRSRKFR+  ++A  T   VRI E +TE FVVKDHRGELYKKHHPP L DE
Sbjct: 198 IEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVKDHRGELYKKHHPPSLNDE 257

Query: 163 VWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHAR 221
           VWRL KIG+ G F  KL + GI TVQ+FLK+S+V+P +LR+ILG GMSEKMWD T+KHA+
Sbjct: 258 VWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRLRKILGIGMSEKMWDVTIKHAK 317

Query: 222 TCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNL------NGLKRAYS 273
           TC MG+KLY++RG    I LN ICQ+VRA INGQT   RD+ N+      N ++ AY+
Sbjct: 318 TCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDICNMDKSYIQNYVREAYA 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521183|ref|XP_003630880.1| hypothetical protein MTR_8g104490 [Medicago truncatula] gi|355524902|gb|AET05356.1| hypothetical protein MTR_8g104490 [Medicago truncatula]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/298 (55%), Positives = 212/298 (71%), Gaps = 26/298 (8%)

Query: 1   SPSLYFQALE-PSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLS 59
           SPSL  +A+E P S +  F KKLSLPIFTGS+I +++ + + +++V  +S  +I P +L 
Sbjct: 14  SPSLRLKAMEEPLSFQFMFKKKLSLPIFTGSRILDMDGNSINVILVD-KSNDQIVPTSLP 72

Query: 60  QPIKILMV-----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVED 102
            PIKI +V                 EEF SNIVKER GKR LLTG++N+T+++G+A + D
Sbjct: 73  HPIKIEIVVLDGDFPPSEKESSWTSEEFNSNIVKERNGKRPLLTGELNLTMRDGIAPIGD 132

Query: 103 IEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDE 162
           IEFTDNS+WIRSRKFR+  ++A  T   VRI E +TE FVVKDHRGELYKKHHPP L DE
Sbjct: 133 IEFTDNSSWIRSRKFRVAVRIAPGTNQSVRILEGMTEPFVVKDHRGELYKKHHPPSLNDE 192

Query: 163 VWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHAR 221
           VWRL KIG+ G F  KL + GI TVQ+FLK+S+V+P +LR+ILG GMSEKMWD T+KHA+
Sbjct: 193 VWRLEKIGKDGAFHKKLTSKGITTVQEFLKLSVVDPLRLRKILGIGMSEKMWDVTIKHAK 252

Query: 222 TCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNL------NGLKRAYS 273
           TC MG+KLY++RG    I LN ICQ+VRA INGQT   RD+ N+      N ++ AY+
Sbjct: 253 TCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPNRDICNMDKSYIQNYVREAYA 310

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524378|ref|XP_003530806.1| PREDICTED: uncharacterized protein LOC100788183 [Glycine max]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/290 (54%), Positives = 205/290 (70%), Gaps = 25/290 (8%)

Query: 1   SPSLYFQAL---EPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIA-PA 56
           SPSL  +A    + S  +L FSKKLS+PIFTGS+I +I+ + + +++V    G  +A P 
Sbjct: 81  SPSLRIEAASMEQESKYELVFSKKLSVPIFTGSRIVDIDGNSIHVILVDKSGGEVVAVPT 140

Query: 57  NLSQPIKILMV--------------------EEFESNIVKERTGKRLLLTGDVNVTIKNG 96
           +L  PIK+ +V                    EEF ++IVKERTGKR LLTG++N+T+++G
Sbjct: 141 SLGHPIKLEIVVLDGDFPAPNNNKEEYSWTSEEFNNHIVKERTGKRPLLTGELNLTMRDG 200

Query: 97  VARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHP 156
           +A +E+IEFTDNS+WIRSRKFR+  +VA  +   VRIRE ITE FVVKDHRGELYKKHHP
Sbjct: 201 IALIEEIEFTDNSSWIRSRKFRVAVRVAPGSNQTVRIREGITEPFVVKDHRGELYKKHHP 260

Query: 157 PMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD- 215
           PML DEVWRL KIG+ G F  KL+  GI +VQDFLK+  V+  +L++ILG GMS+KMWD 
Sbjct: 261 PMLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLYFVDFHRLKKILGVGMSDKMWDV 320

Query: 216 TMKHARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNL 265
           T+KHA+TC  G+K Y +RG N  + LN ICQ+VRA INGQTF  R+L N+
Sbjct: 321 TIKHAKTCEKGNKYYAYRGHNFTVFLNSICQLVRADINGQTFPGRELSNM 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529562|ref|XP_003533359.1| PREDICTED: uncharacterized protein LOC100803213 [Glycine max]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 211/294 (71%), Gaps = 25/294 (8%)

Query: 1   SPSLYFQALE---PSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPAN 57
           SPSL  QA++   PS+L+L FSK+LSLPIFTGS+I +++ + + IV++   +G  + P +
Sbjct: 75  SPSLRLQAMDQQQPSTLQLCFSKRLSLPIFTGSRILDVDGNPINIVLMDKSNGQGV-PTS 133

Query: 58  LSQPIKILMV-----------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARV 100
           LS  IK+ +V                 EEF  +IVKER GKR LL G++NV +++G+A  
Sbjct: 134 LSNAIKLEIVVVDGDFPLNDNDEDWTSEEFNRHIVKERNGKRPLLAGELNVIMRDGIAPT 193

Query: 101 EDIEFTDNSNWIRSRKFRIGAKVAQWTYHG-VRIREAITEAFVVKDHRGELYKKHHPPML 159
            DIEFTDNS+WIR RKFR+  +V   T  G VRIREA+TEAFVVKDHRGELYKKHHPPML
Sbjct: 194 GDIEFTDNSSWIRCRKFRVAVRVVPGTNPGGVRIREAMTEAFVVKDHRGELYKKHHPPML 253

Query: 160 EDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMK 218
            DEVWRL KIG+ G F  KL++ GIKTVQDFLK+++++  KLR ILG GMS+KMW+ T+K
Sbjct: 254 HDEVWRLEKIGKDGAFHRKLSSEGIKTVQDFLKLAVIDALKLRNILGMGMSDKMWEVTIK 313

Query: 219 HARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNLNGLKRAY 272
           HA TC +GSK+YI+RG    I L+P+C+++RA +NG TF  RD   ++ L +AY
Sbjct: 314 HAMTCDIGSKMYIYRGPEFTIFLDPVCKLIRADVNGHTFSNRDP--MSHLNKAY 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513070|ref|XP_003525237.1| PREDICTED: uncharacterized protein LOC100802257 [Glycine max]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/287 (53%), Positives = 208/287 (72%), Gaps = 22/287 (7%)

Query: 1   SPSLYFQAL---EPSSLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSR---IA 54
           SPSL  +A    +PS+ +L FSKKL +PIFTGS+I +I+ + +Q+++V    G       
Sbjct: 79  SPSLRIEAASLEKPSNYELMFSKKLLVPIFTGSRIVDIDGNPIQVILVDKSGGDGELVAV 138

Query: 55  PANLSQPIKILMV---------------EEFESNIVKERTGKRLLLTGDVNVTIKNGVAR 99
           P ++ QPIK+ +V               EEF +NIVKERTGKR LLTG++N+T+++G+A 
Sbjct: 139 PTSVPQPIKLEIVVLDGDFPNNKESWTTEEFNNNIVKERTGKRPLLTGELNLTMRDGIAP 198

Query: 100 VEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPML 159
           +E+IEFTDNS+WIRSRKFR+  +VA  + H + IR+ +TE FVVKDHRGELYKKH+PP L
Sbjct: 199 IEEIEFTDNSSWIRSRKFRVAVRVAPGSNHTLPIRQGMTEPFVVKDHRGELYKKHYPPKL 258

Query: 160 EDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMK 218
            DEVWRL KIG+ G F  KL+  GI +VQDFLK+S+V+  +LR+ILG GMSEKMW+ TMK
Sbjct: 259 NDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDVHRLRKILGVGMSEKMWEVTMK 318

Query: 219 HARTCSMGSKLYIFRGQNCIIILNPICQVVRATINGQTFLTRDLPNL 265
           HA+TC  G+K Y++RG N  + LN ICQ+VRA INGQ+F +R+  N+
Sbjct: 319 HAKTCEKGNKYYVYRGPNFSVFLNSICQLVRADINGQSFPSRERSNM 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.897	0.543	0.546	1.3e-68
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.897	0.378	0.460	8.6e-56
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.897	0.393	0.430	1.2e-51
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.897	0.407	0.445	1.2e-51
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.857	0.416	0.445	1.1e-48
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.871	0.397	0.423	9.8e-48
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.886	0.429	0.407	5.3e-40

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 147/269 (54%), Positives = 198/269 (73%)

Query:    25 PIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMV--------------EEF 70
             PIFTGSKI++++++ L+I++V   +     P NL++PIK+ +V              +EF
Sbjct:   101 PIFTGSKISDVDNNPLEIILVDDSN----KPVNLNRPIKLDIVALHGDFPSGDKWTSDEF 156

Query:    71 ESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTY-H 129
             ESNI+KER GKR LL G+V+VT++NGVA + +I FTDNS+WIRSRKFRIGAKVA+ +   
Sbjct:   157 ESNIIKERDGKRPLLAGEVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQ 216

Query:   130 GVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQD 189
             GV + EA+TEA VV+DHRGELYKKHHPPMLEDEVWRL KIG+ G F  KL++  I TVQD
Sbjct:   217 GVVVCEAMTEAIVVRDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQD 276

Query:   190 FLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMGSKLYIFRGQNCIIILNPICQVV 248
             FLK+S+V+  +LR+ILG GMS++ W+ T+KHAR C +G+KLYI RG N  +ILNPIC+V+
Sbjct:   277 FLKLSVVDVDELRQILGPGMSDRKWEVTLKHARECILGNKLYISRGPNFFMILNPICEVM 336

Query:   249 RATINGQTFLTRDL---PNLNGLKR-AYS 273
             +A I+G    +++    P +  L R AYS
Sbjct:   337 KALIDGHVLSSQESLNQPYVKNLVRDAYS 365

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 123/267 (46%), Positives = 171/267 (64%)

Query:    25 PIFTGSKITNIESDHLQIVVVKTRSGSRIAPA-NLSQPIKILMVE--------------E 69
             P+FTG K+   +   + +V++   +G  +      S  + I+++E              E
Sbjct:   105 PLFTGGKVEGEQGAVIHVVLIDANTGRAVVYGPEASAKLHIVVLEGDFNTEDDEDWTQEE 164

Query:    70 FESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYH 129
             FES++VKER+GKR LLTG+V VT+K GV  + ++ FTDNS+WIRSRKFR+G +V      
Sbjct:   165 FESHVVKERSGKRPLLTGEVYVTLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCD 224

Query:   130 GVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQD 189
             G+RIREA TEAFVVKDHRGELYKKH+PP L D+VWRL KIG+ G F  KL A GI TV+D
Sbjct:   225 GMRIREAKTEAFVVKDHRGELYKKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVED 284

Query:   190 FLKVSIVEPQKLRRILGTGMSEKMWDTM-KHARTCSMGSKLYIFRGQ---NCIIILNPIC 245
             FL+V + +  KLR ILG+GMS KMWD + +HA+TC   SKLYI+  +   N  ++ N I 
Sbjct:   285 FLRVMVKDSPKLRTILGSGMSNKMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIY 344

Query:   246 QVVRATINGQTFLTRDLPNLNGLKRAY 272
             ++    I+G  + + D  +L   ++ Y
Sbjct:   345 EL-SGLISGDQYFSAD--SLTDSQKVY 368

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 114/265 (43%), Positives = 170/265 (64%)

Query:    25 PIFTGSKITNIESDHLQIVVVKTRSGS--RIAP-ANLSQPIKIL------------MVEE 69
             P+FTG KI   +   + +V++   +G    + P A+    + +L              EE
Sbjct:   109 PLFTGGKIEGEQGAAIHVVLLDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEE 168

Query:    70 FESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYH 129
             FE ++VKER GKR LLTGDV VT+K GV  + ++ FTDNS+WIR RKFR+G +V+     
Sbjct:   169 FEGHLVKERQGKRPLLTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCE 228

Query:   130 GVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQD 189
             G+R+REA TEAF VKDHRGELYKKH+PP L+DEVWRL KIG+ G F  KL  +GI  V++
Sbjct:   229 GMRVREAKTEAFTVKDHRGELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKE 288

Query:   190 FLKVSIVEPQKLRRILGTGMSEKMWDTM-KHARTCSMGSKLYIFRGQNCI-IILNPICQV 247
             FL++ + + QKLR ILG+GMS +MW+T+ +H++TC +   LY++  ++ + ++ N I + 
Sbjct:   289 FLRLMVKDSQKLRTILGSGMSNRMWETLAEHSKTCVLSEMLYVYYPEDSVGVVFNNIYEF 348

Query:   248 VRATINGQTFLTRDLPNLNGLKRAY 272
                 I+G+ +   D  +L+  ++ Y
Sbjct:   349 -SGLISGKQYYPAD--SLSDNQKGY 370

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 119/267 (44%), Positives = 168/267 (62%)

Query:    25 PIFTGSKITNIESDHLQIVVVKTRSGS--RIAP-ANLSQPIKIL------------MVEE 69
             P+FTG ++   +   + +V++   +G    + P A+L   + +L              EE
Sbjct:    94 PLFTGGRVEGEQGATIHVVLIDANTGRPVTVGPEASLKLEVVVLGGDFNNEDDEDWTQEE 153

Query:    70 FESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYH 129
             FES++VKER GKR LLTGD+ V +K GV  + +I FTDNS+WIRSRKFR+G +V      
Sbjct:   154 FESHVVKEREGKRPLLTGDLFVVLKEGVGTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCD 213

Query:   130 GVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQD 189
             G+RIREA TEAF VKDHRGELYKKH+PP L DEVWRL KIG+ G F  +L A+GI TV+ 
Sbjct:   214 GIRIREAKTEAFSVKDHRGELYKKHYPPALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEG 273

Query:   190 FLKVSIVEPQKLRRILGTGMSEKMWDTM-KHARTCSMGSKLYIFRGQNCI---IILNPIC 245
             FL+  + +  KLR ILG+GMS KMWD + +HA+TC +  KLYI+  ++     ++ N I 
Sbjct:   274 FLRQLVRDSTKLRAILGSGMSNKMWDLLVEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIY 333

Query:   246 QVVRATINGQTFLTRDLPNLNGLKRAY 272
             ++    I    +L+ D  +L+  ++ Y
Sbjct:   334 EL-SGLITEDQYLSAD--SLSESQKVY 357

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 115/258 (44%), Positives = 156/258 (60%)

Query:    26 IFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQP-IKILMV--------------EEF 70
             +FTG K+   +   + +V++   +G+ I     S   + I+++              E F
Sbjct:   105 LFTGGKVEGEQGSAIHVVLIDANTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHF 164

Query:    71 ESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHG 130
             ES  VKER GKR +LTGD +V IK GV  +  + FTDNS+WIRSRKFR+G K A     G
Sbjct:   165 ESFEVKEREGKRPILTGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPAT----G 220

Query:   131 VRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDF 190
               IREA TE F VKDHRGELYKKH+PP+L DEVWRL KI + G    KL  S I TV+DF
Sbjct:   221 FHIREAKTEPFAVKDHRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDF 280

Query:   191 LKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMGSKLYIF---RGQNCIIILNPICQ 246
             L++ + +PQKLR +LG+GMS +MWD T++HA+TC +G KLY +   +     ++ N I +
Sbjct:   281 LQILMKDPQKLRSLLGSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYE 340

Query:   247 VVRATINGQTFLTRDLPN 264
                   NG  FL+ +  N
Sbjct:   341 FQGLIANGH-FLSSESLN 357

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 110/260 (42%), Positives = 156/260 (60%)

Query:    26 IFTGSKITNIESDHLQIVVVKTRSGSRIAPANLS-QPIKILMVE--------------EF 70
             +FTG K+       + +V++   +G+ +     S   + ++++E               F
Sbjct:   101 LFTGGKVEGERGSAIHVVLIDANTGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHF 160

Query:    71 ESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHG 130
             ES  VKER GKR +LTGD  + +K GV  + ++ FTDNS+WIRSRKFR+G K A      
Sbjct:   161 ESFEVKEREGKRPILTGDTQIVLKEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDS 220

Query:   131 VRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDF 190
               IREA TE F VKDHRGELYKKH+PP + DEVWRL +I + G    KL  + I TV+DF
Sbjct:   221 FCIREAKTEPFAVKDHRGELYKKHYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDF 280

Query:   191 LKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMGSKLYIFRGQNCI---IILNPICQ 246
             L++ + +PQKLR +LG+GMS +MW+ T++HA+TC +G KLY+F         ++ N I +
Sbjct:   281 LRLLVKDPQKLRNLLGSGMSNRMWENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYE 340

Query:   247 VVRATINGQTFLTRDLPNLN 266
                   NGQ FL+  L +LN
Sbjct:   341 FRGLITNGQ-FLS--LESLN 357

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 108/265 (40%), Positives = 146/265 (55%)

Query:    26 IFTGSKITNIESDHLQIVVVKTR----------SGSRI--APANLSQPIKILMVEEFESN 73
             IFTGSKI   +   L I +V             S SR+   P N     +   VE F  N
Sbjct:    98 IFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNADFTEESWTVEGFNRN 157

Query:    74 IVKERTGKRLLLTGDVNVTIKNGVARVE-DIEFTDNSNWIRSRKFRIGAKVAQWTYHGVR 132
             I+ +R GKR LLTGD+ V +KNGV  +  DI F+DNS+W RSRKFR+GAK+      G  
Sbjct:   158 ILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRKFRLGAKLT-----GDG 212

Query:   133 IREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLK 192
               EA +EAF  +D RGE YKKHHPP   DEVWRL KI + G    +LA   I TV+DF +
Sbjct:   213 AVEARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSATRLAERKILTVKDFRR 272

Query:   193 VSIVEPQKLRRILGTGMSEKMWDTM-KHARTCSMG-SKLYIFRGQN--CIIILNPICQVV 248
             +  V   +L  I+G G+S+K W+T+  HA  C +  ++ YI+        ++ N + +++
Sbjct:   273 LYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYNANTPGVTLLFNSVYELI 332

Query:   249 RATINGQTFLTRDLPNLNGLK-RAY 272
             R + NG      D P L+ LK  AY
Sbjct:   333 RVSFNGNDIQNLDQPILDQLKAEAY 357


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       260   0.00089  114 3  11 22  0.44    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  199 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.41u 0.19s 21.60t   Elapsed:  00:00:01
  Total cpu time:  21.41u 0.19s 21.60t   Elapsed:  00:00:01
  Start:  Thu May  9 20:14:43 2013   End:  Thu May  9 20:14:44 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XII0454 hypothetical protein (435 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-113

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  327 bits (840), Expect = e-113
 Identities = 144/286 (50%), Positives = 183/286 (63%), Gaps = 29/286 (10%)

Query: 14  LKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMV------ 67
           LKL F  KLSLPIFTGSKI   +   ++I +V   +G     +      K+ +V      
Sbjct: 2   LKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTG---VTSGPLSSAKLEVVVLHGDF 58

Query: 68  ----------EEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKF 117
                     EEF  NIVKER GKR LLTGDV VT+KNGVA + +I FTDNS+W RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 118 RIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHPPMLEDEVWRLGKIGRGGNFCG 177
           R+GA+V   +Y GVR+REA+TE+FVVKDHRGELYKKHHPP LEDEVWRL KIG+ G F  
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 178 KLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWDTM-KHARTCSMGSKLYIFR--- 233
           +L ASGI TV+DFL++   +P KLR+ILG+GMS KMW+T   HA+TC +G K YI+R   
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 234 GQNCIIILNPICQVVRATINGQTFLTRDLPNL-----NGLKR-AYS 273
            +N  +  N + ++V  + +G      +L  L     N L + AY 
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQAAVNQLVKQAYQ 284

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	87.55
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	85.11
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	84.94

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=2.4e-111  Score=784.09  Aligned_cols=258  Identities=55%  Similarity=0.888  Sum_probs=251.8

Q ss_pred             ceEEEEccCCCCCcccCCceeecCCCceEEEEEEcCCCCceecCCCCCceEEeeh----------------Hhhhhcccc
Q 043314           13 SLKLNFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSGSRIAPANLSQPIKILMV----------------EEFESNIVK   76 (273)
Q Consensus        13 ~~~L~F~n~l~~pifT~~~I~a~~g~~i~V~L~D~~~~~~iv~~g~~ss~kieIv----------------eeF~~~Iv~   76 (273)
                      ++||+|+|+|++|||||++|+|+||+||+|+|+|++ |+  |++||+||+|||||                |||+++||+
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~-~~--v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~   77 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDAN-TG--VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVK   77 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECC-CC--ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEee
Confidence            589999999999999999999999999999999998 44  99999999999999                999999999


Q ss_pred             cCCCccccccceEEEEEeCcEEeecCeEEecCCCcccCcceEEEEEEeecCCCceeeeeeeecceEEeecCCcccccCCC
Q 043314           77 ERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRGELYKKHHP  156 (273)
Q Consensus        77 ~R~Gk~pLL~Gdl~v~L~~Gva~l~di~FtDnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p  156 (273)
                      +|+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+||||||
T Consensus        78 ~r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p  157 (299)
T PF07887_consen   78 EREGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYP  157 (299)
T ss_pred             cCCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeecCCCcccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhcccCCCceEEEe--
Q 043314          157 PMLEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMGSKLYIFR--  233 (273)
Q Consensus       157 P~L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAktC~l~~k~y~y~--  233 (273)
                      |+|+|||||||+|||||+|||+|+++||+||+|||+++++||++||+|||+|||++||+ ||+|||||++++++|+|+  
T Consensus       158 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~~~  237 (299)
T PF07887_consen  158 PSLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYYDE  237 (299)
T ss_pred             CCCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999 999999999999999999  


Q ss_pred             cCcEEEEEcccceeeeeEECCEEeeCCCCCch------hhhhhhcC
Q 043314          234 GQNCIIILNPICQVVRATINGQTFLTRDLPNL------NGLKRAYS  273 (273)
Q Consensus       234 ~~~v~l~FN~i~~lvga~~~g~~~~~~~l~~~------~~~k~~~~  273 (273)
                      ++|++|+||||||||||+|+|||++.++|++.      +.+++||.
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~~v~~Lv~~AY~  283 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKAYVDKLVKQAYE  283 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999      46788883

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=87.55  E-value=0.42  Score=45.43  Aligned_cols=47  Identities=26%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             ccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhcccCC
Q 043314          175 FCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMG  226 (273)
Q Consensus       175 ~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAktC~l~  226 (273)
                      --++|+++||.||+||+..   +|..|.+++  ++|...++ +..||.+|...
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~   60 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPM   60 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            3489999999999998865   899999997  69999999 99999988653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=85.11  E-value=0.62  Score=44.31  Aligned_cols=48  Identities=27%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             cccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhcccCC
Q 043314          174 NFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMG  226 (273)
Q Consensus       174 ~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAktC~l~  226 (273)
                      .--++|+++||.||+||+..   ++..|.++.  |+|...++ +++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            34589999999999998765   789999996  69999999 99999887654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=84.94  E-value=0.7  Score=44.67  Aligned_cols=59  Identities=24%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             eeeeeeecCCCcccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhcccCC
Q 043314          163 VWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSMG  226 (273)
Q Consensus       163 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAktC~l~  226 (273)
                      +-.|..-|-.-.--++|+++||.||+|++.+   ++..|.++.  ++|....+ ++.||.+|...
T Consensus        28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~   87 (342)
T PLN03186         28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPL   87 (342)
T ss_pred             HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhccc
Confidence            4444332332234599999999999998765   788999997  69999999 99999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 49/310 (15%), Positives = 99/310 (31%), Gaps = 112/310 (36%)

Query: 17  NFSKKLS---LPIFTGSKITNIESDHLQIVVVKTR-SGS-RIAPANLSQPIKILMVEEF- 70
            F        +     S ++  E DH  I++ K   SG+ R+    LS+  ++  V++F 
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEEM--VQKFV 83

Query: 71  ---------------------ESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNS 109
                                 S + +    +R  L  D  V  K  V+R++        
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL----- 138

Query: 110 NWIRSRKFRIGAKVAQWTYHGVRIREAITEAFVVKDHRG-ELYKKHHPPMLEDEVWRLGK 168
                                 ++R+A+ E   ++  +   +                  
Sbjct: 139 ----------------------KLRQALLE---LRPAKNVLID----------------- 156

Query: 169 IGRGGNFCGK--LAAS-----GIKTVQDF----LKV-------SIVEP-QKLRRILGTGM 209
            G  G   GK  +A        ++   DF    L +       +++E  QKL   +    
Sbjct: 157 -GVLG--SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 210 SEKMWDTMKHA--RTCSMGSKLYIF----RGQNCIIILNPIC--QVVRA-TINGQTFL-T 259
           + +  D   +   R  S+ ++L         +NC+++L  +   +   A  ++ +  L T
Sbjct: 214 TSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 260 RDLPNLNGLK 269
           R     + L 
Sbjct: 273 RFKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	90.94
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	89.19

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=90.94  E-value=0.02  Score=42.28  Aligned_cols=61  Identities=28%  Similarity=0.398  Sum_probs=47.8

Q ss_pred             CCCceeeeeeecCCCcccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhc-ccCC
Q 043314          159 LEDEVWRLGKIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHART-CSMG  226 (273)
Q Consensus       159 L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAkt-C~l~  226 (273)
                      +.|++-.|++|+..-  -++|.++||+||+|+..+   +++.|-.|.  |+|...=+ ++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~--~~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDL--AFKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHH--HHHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHH--HHHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            456777788776643  499999999999997654   788898886  68888878 9999987 6553

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=89.19  E-value=0.15  Score=38.96  Aligned_cols=29  Identities=24%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             cchhhhCCCccHHHHHHHhccChHHHHHHHcC
Q 043314          176 CGKLAASGIKTVQDFLKVSIVEPQKLRRILGT  207 (273)
Q Consensus       176 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~  207 (273)
                      -++|++++|.||+||+.   .|+.+|.+++|.
T Consensus        17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~l   45 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCGL   45 (83)
T ss_dssp             HHHHHHTTCCCHHHHTT---SCHHHHHHHHTC
T ss_pred             HHHHHHCCCCCHHHHHh---CCHHHHHHHhCC
Confidence            48899999999999975   699999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	86.14

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.14  E-value=0.13  Score=35.70  Aligned_cols=51  Identities=25%  Similarity=0.271  Sum_probs=40.6

Q ss_pred             eecCCCcccchhhhCCCccHHHHHHHhccChHHHHHHHcCCCCccchh-hhhhhhcccC
Q 043314          168 KIGRGGNFCGKLAASGIKTVQDFLKVSIVEPQKLRRILGTGMSEKMWD-TMKHARTCSM  225 (273)
Q Consensus       168 ~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W~-~v~HAktC~l  225 (273)
                      +||...  -++|.++|++||++..   +..++.|-++  .|++++.=+ +++-|+.++.
T Consensus        10 Gig~~~--~~kL~~aG~~Tve~ia---~~t~~~L~~i--~Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMAD--VKKLRESGLHTAEAVA---YAPRKDLLEI--KGISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHH--HHHHHTTSCCSHHHHH---HSCSHHHHTS--TTCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHH--HHHHHHcCCCcHHHHH---hCCHHHHHHc--CCCCHHHHHHHHHHHHHHcC
Confidence            454433  4899999999999974   5677788888  479999999 9999988664