Citrus Sinensis ID: 043319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSMKAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSLNM
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msmkaqkpcveksgvhkydvfvsfrgedtqdnfTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIpvfyrvdpsdvrnrtgsfgdSFSKLAERLKVNTEELRSWRNALKEAAtlsgfhslnm
Flexible Loop (DISEMBL)
msmkaqkpcveksgvhkYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIpvfyrvdpsdvrnrtgsfgdsfskLAERLKVNTEELRSWRNALKeaatlsgfhslnm
Low Complexity Region (SEG)
MSMKAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSLNM
Disordered region (IsUnstruct)
*************GVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDV**********************************************
Disordered Region (DISOPRED)
******************DVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER*****EEL*SWRNALKEAATLSGFHSLNM
Disordered Region (DISEMBL)
************SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSLNM
Disordered Region (DISPRO)
*************GVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMKAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSLNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.859	0.123	0.535	9e-38
O82500	1095	Putative disease resistan	no	no	0.878	0.131	0.513	5e-35
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.871	0.109	0.466	7e-32
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.792	0.316	0.412	3e-24
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.853	0.395	0.382	1e-23
Q9SYC9	571	Vesicle-associated protei	no	no	0.890	0.255	0.326	2e-19
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.798	0.334	0.378	1e-18
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.713	0.061	0.291	4e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.512	0.061	0.347	5e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  155 bits (393), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 18  YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVI 76
           YDVF+SFRGEDT+  FTSHLY  L  + I+TF DD+ L  G  I   L  AIE S  +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           VFSE+YA+SRWCL+ELVKI++CK  + Q VIP+FY VDPS VRN+  SF  +F +   + 
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 137 KVNTEELRSWRNALKEAATLSG 158
           K + E ++ WR AL EAA L G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  146 bits (369), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           +YDVF SFRGED ++NF SHL      + I TF DD + R   I   L  AI  S ISV+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVV 69

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           +FSE+YASS WCLDEL++I+ CK+E    V+PVFY+VDPSD+R +TG FG SF    E  
Sbjct: 70  LFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF---LETC 126

Query: 137 KVNTEELR-SWRNALKEAATLSGFHSLN 163
              TEE + +WR AL +AA + G H  N
Sbjct: 127 CGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 5/148 (3%)

Query: 13  SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASD 72
           SG  +YDVF SFRGED +D+F SHL   L R    TFIDD++ R   I   L++AI+ S 
Sbjct: 7   SGSRRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESR 65

Query: 73  ISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKL 132
           I++++FS++YASS WCL+ELV+I  C     Q+VIP+F+ VD S+V+ +TG FG  F   
Sbjct: 66  IAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFE-- 123

Query: 133 AERLKVNTE-ELRSWRNALKEAATLSGF 159
            E  K  +E E +SW+ AL   A ++G+
Sbjct: 124 -ETCKAKSEDEKQSWKQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 81/131 (61%), Gaps = 1/131 (0%)

Query: 20  VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFS 79
           VF++FRG+D +  F S L   L ++ I  FID+Q  RG  +  SL + I  S I++++FS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 80  ESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVN 139
           E Y  S WC+DELVKI +   +   I+IP+FYR+D   V++ TG FGD+F  L ++ +  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 140 TEELRSWRNAL 150
            ++L  W  AL
Sbjct: 143 PKKLHKWTEAL 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 20  VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFS 79
           VF++FRG+D ++ F S L   +   NI  FID     G ++    V  I+ S ++V++FS
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFS 74

Query: 80  ESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVN 139
           + Y SS WCLDEL +I DC  +     IP+FY++ PS V    G FGD+F  L E+ K +
Sbjct: 75  KDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKND 134

Query: 140 TEELRSWRNALKEAATLSGFH 160
            E  + W+ AL+    L G  
Sbjct: 135 PERTQKWQEALESIPKLKGLR 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 1/147 (0%)

Query: 15  VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDIS 74
           + +Y VF++FRG++ +++F   L   +  + I  F D+   RG  ++  L   IE S ++
Sbjct: 355 LPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVA 413

Query: 75  VIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAE 134
           V +FSE Y  S WCLDELVK+ +  ++   +V+PVFYR++ +  +   G+FGD+   L  
Sbjct: 414 VAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEW 473

Query: 135 RLKVNTEELRSWRNALKEAATLSGFHS 161
             +   E ++ W+ AL    +  G  S
Sbjct: 474 EYRSEPERIQKWKEALSSVFSNIGLTS 500

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 20  VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFS 79
           VF+ FRG D + +F S L   L   NI  FID+    G E++ +L+  IE S++++++FS
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFS 75

Query: 80  ESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVN 139
             +  S  CL+EL KI + K +   IVIP+FY+V PS V+   G FGD+F  L    +  
Sbjct: 76  VDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHM 135

Query: 140 TEELRSWRNALK 151
               + W+ AL+
Sbjct: 136 LPITQKWKEALE 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 27/144 (18%)

Query: 18  YDVFVSF-RGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           YDV + + R + + ++F SHL ++LCR+ I  +  ++ N         V+A+    + +I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNE--------VDALPKCRVLII 717

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSD-VRNRTGSFGDSFSKLAER 135
           V + +Y  S      L+ IL+ +    ++V P+FYR+ P D V N         SK  ER
Sbjct: 718 VLTSTYVPS-----NLLNILEHQHTEDRVVYPIFYRLSPYDFVCN---------SKNYER 763

Query: 136 LKVNTEELRSWRNALKEAATLSGF 159
             +  +E + W+ ALKE   + G+
Sbjct: 764 FYLQ-DEPKKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 27  EDTQDNFTSHLYSTLCRQNIQ-TFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASS 85
           E+ + +F SHL   L R+ +   FID      D +S    + +E + +SV++   +   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 86  RWCLDELVKILDCKKEYAQIVIPVFYRVDPSD 117
              LD+LVK+LDC+K   Q+V+PV Y V  S+
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGVRSSE 98

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255555357	1094	leucine-rich repeat-containing protein,	0.884	0.132	0.641	7e-48
224145362	155	predicted protein [Populus trichocarpa]	0.884	0.935	0.641	8e-48
317106744	947	JHS03A10.2 [Jatropha curcas]	0.932	0.161	0.601	1e-47
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.902	0.131	0.621	3e-47
255561496	876	TMV resistance protein N, putative [Rici	0.890	0.166	0.623	5e-47
325683726	630	TIR-NBS-LRR type protein [Fragaria x ana	0.908	0.236	0.6	6e-47
359493351	2816	PREDICTED: uncharacterized protein LOC10	0.896	0.052	0.608	8e-46
357486483	242	TMV resistance protein N [Medicago trunc	0.878	0.595	0.583	1e-45
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.884	0.101	0.586	1e-45
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.884	0.098	0.6	1e-45

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 115/145 (79%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           KYDVF+SFRGEDT+ NFTSHL++ L  + I TFIDD L RG+EIS SL+ AIE S ISV+
Sbjct: 22  KYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISVV 81

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           + S+ Y SS+WCL+ELVKIL+C K   Q+VIPVFYRVDPS VRN+TGSF D F++  E L
Sbjct: 82  IISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESL 141

Query: 137 KVNTEELRSWRNALKEAATLSGFHS 161
            V+ E+++SWR ALKE A LSG+HS
Sbjct: 142 SVSKEKVQSWRAALKEVANLSGWHS 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 120/145 (82%)

Query: 15  VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDIS 74
           V KYDVF+SFRGEDT+  FTSHLY+ L R+ I+TFID QL RGDEISESL+  IE + +S
Sbjct: 7   VIKYDVFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLS 66

Query: 75  VIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAE 134
           VIVFSE+YASS+WCL+ELVKI +C+K   QIVIPVFY+VDPS VRN+TGSFGD+F++L  
Sbjct: 67  VIVFSENYASSKWCLEELVKIFECRKNNGQIVIPVFYQVDPSHVRNQTGSFGDAFARLIR 126

Query: 135 RLKVNTEELRSWRNALKEAATLSGF 159
           +  +  ++ +S+R+AL +AATLSG+
Sbjct: 127 KKALTMDKEQSFRDALTDAATLSGW 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/153 (60%), Positives = 120/153 (78%)

Query: 10  VEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE 69
           +E S   +YDVF+SFRGEDT+D+FTSHLY+ LC + IQTFID+ L RG EIS SL+ AIE
Sbjct: 2   MECSVQERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIE 61

Query: 70  ASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSF 129
            S ISV + SE+YASS+WCL+EL +I+ C K+  QIVIPVFYR+ PSDVRN+TGSF D+F
Sbjct: 62  ESKISVPILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAF 121

Query: 130 SKLAERLKVNTEELRSWRNALKEAATLSGFHSL 162
           ++  + L VN ++++ WR ALKE A LSG+ S+
Sbjct: 122 ARYEKSLMVNKDKVQRWRAALKEVAGLSGWDSM 154

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/148 (62%), Positives = 119/148 (80%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           KYDVF+SFRGEDT+  F SHLY+ L R+ I TFID +LNRG+EIS SL+ AIE S +SV+
Sbjct: 14  KYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSVV 73

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           VFS++YASS+WCL+EL KIL+CKK   Q+VIPVFYRVDPS VRN+TGSF D+F++  + L
Sbjct: 74  VFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQLL 133

Query: 137 KVNTEELRSWRNALKEAATLSGFHSLNM 164
           K   E++ +WR A++EAA LSG+ S N+
Sbjct: 134 KEKMEKVLNWRAAMREAANLSGWDSHNI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 115/146 (78%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           KYDVF+SFRGEDT+DNFTSHLYS L ++ I TF+D ++ RG+EIS S+  AI+ S +SVI
Sbjct: 10  KYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSKLSVI 69

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           +FSE YA S+WCLDEL KIL+CKK   QIVIPVFYRVDP  VRN+ GSF  +F+K  E L
Sbjct: 70  IFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEETL 129

Query: 137 KVNTEELRSWRNALKEAATLSGFHSL 162
           K   E++ SWR+AL EA ++SG++SL
Sbjct: 130 KERMEKVESWRSALNEAGSISGWNSL 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325683726|gb|ADZ44604.1| TIR-NBS-LRR type protein [Fragaria x ananassa]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 119/150 (79%), Gaps = 1/150 (0%)

Query: 11  EKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEA 70
           E S  +KY VF+SFRGEDT++NFT HLYS L  + I TF+DDQL RG+EIS +L+ AIE 
Sbjct: 6   ECSPTYKYHVFLSFRGEDTRNNFTGHLYSALREKGIFTFMDDQLIRGEEISPALIQAIEQ 65

Query: 71  SDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFS 130
           S IS++VFS +YASS+WCLDELVKILDCKK+  QIV+PVF++VDPSDVRN  GSFG+  +
Sbjct: 66  SKISIVVFSGNYASSKWCLDELVKILDCKKKIQQIVLPVFFKVDPSDVRNHRGSFGEGLA 125

Query: 131 KLAERLKVNTEELRSWRNALKEAATLSGFH 160
            L  + K + ++++ W+ AL +AA+LSG+H
Sbjct: 126 NLERKFK-DEDQVQEWKTALFQAASLSGWH 154

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493351|ref|XP_002277841.2| PREDICTED: uncharacterized protein LOC100251634 [Vitis vinifera]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 115/148 (77%), Gaps = 1/148 (0%)

Query: 17   KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISV 75
            KY VF+SFRGEDT++NFTSHLY  L ++ I+TF+DD+ L  G+EIS  LV AI+ S  S+
Sbjct: 1404 KYAVFLSFRGEDTRNNFTSHLYKALDQKGIETFMDDKKLRTGEEISPILVGAIQRSRCSI 1463

Query: 76   IVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER 135
            IV SE+YASS+WCL+ELV+IL+CK+   Q V+P+FY VDPS VRN+TGSFG++ SK  E 
Sbjct: 1464 IVLSENYASSKWCLEELVEILECKRTKNQRVVPIFYNVDPSHVRNQTGSFGEALSKHEEN 1523

Query: 136  LKVNTEELRSWRNALKEAATLSGFHSLN 163
            LK+  E+LR WR AL + A LSG HSLN
Sbjct: 1524 LKIKGEKLRKWREALTQVANLSGLHSLN 1551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 114/144 (79%)

Query: 16  HKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISV 75
            K++VF+SFRGEDT+  FTSHL++TL R ++ T+ID  L RGDEIS +L+ AIE + +SV
Sbjct: 12  QKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAIEEASLSV 71

Query: 76  IVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER 135
           +VFS++Y +S+WCLDELVKIL+CKK   QIV+P+FY ++PSDVRN+TGS+ D+F K  ER
Sbjct: 72  VVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADAFVKHEER 131

Query: 136 LKVNTEELRSWRNALKEAATLSGF 159
              N E ++ WR AL+EAA LSG+
Sbjct: 132 FHGNLERVQKWREALREAANLSGW 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 116/145 (80%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           KYDVF+SFRG+DT++NFTSHLY  LCR+ I+TFIDD+L RG EI+ +L+  IE S ISV+
Sbjct: 12  KYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLKTIEESRISVV 71

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           +FS++YASS WC+DELVKIL+CK+ Y QIV+PVFY V+PSDV  +TGSFG++F++L +  
Sbjct: 72  IFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGSFGNAFAELEKNF 131

Query: 137 KVNTEELRSWRNALKEAATLSGFHS 161
           K   +++  WR  L  AA++SG+ S
Sbjct: 132 KGKMDKVPRWRADLTNAASISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 112/145 (77%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
           KYDVF+SFRG+DT+DNF SHL   LCR+ I+TFIDD+L RG+EI+ +L+  IE S ISVI
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           +FS +YASS WC+DELVKIL+CKK Y QIV+PVFY VDPSDV  +TGSFG++F++L    
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 137 KVNTEELRSWRNALKEAATLSGFHS 161
           K   +++  WR  L  AA +SG+ S
Sbjct: 132 KQKMDKVPRWRADLTSAANISGWDS 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.841	0.440	0.531	2.7e-36
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.859	0.123	0.535	4.6e-34
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.902	0.138	0.467	2.7e-32
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.878	0.131	0.513	4.6e-32
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.932	0.128	0.439	8.6e-32
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.890	0.140	0.48	2.3e-31
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.896	0.15	0.490	5.6e-31
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.890	0.183	0.5	5.8e-31
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.963	0.132	0.418	7.9e-31
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.871	0.116	0.496	1.1e-30

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/143 (53%), Positives = 103/143 (72%)

Query:    17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
             K+DVF+SFR +DT+DNF SHL   L R+ I+TF+ D+L   +   ESL  AIE S ISVI
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESL-KAIEVSKISVI 66

Query:    77 VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
             VFSE++  SRWCLDE+V IL CK+++ QIVIPV Y VDP D+ N+TGSFGD+F+K  ++ 
Sbjct:    67 VFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK- 125

Query:   137 KVNTEELRSWRNALKEAATLSGF 159
                 E+L+ W+++  EA  L G+
Sbjct:   126 ---AEQLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 382 (139.5 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 76/142 (53%), Positives = 98/142 (69%)

Query:    18 YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVI 76
             YDVF+SFRGEDT+  FTSHLY  L  + I+TF DD+ L  G  I   L  AIE S  +++
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    77 VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
             VFSE+YA+SRWCL+ELVKI++CK  + Q VIP+FY VDPS VRN+  SF  +F +   + 
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query:   137 KVNTEELRSWRNALKEAATLSG 158
             K + E ++ WR AL EAA L G
Sbjct:   132 KDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 2.7e-32, P = 2.7e-32
 Identities = 71/152 (46%), Positives = 98/152 (64%)

Query:    13 SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASD 72
             S + +Y VF SF G D +  F SHL+S    + I TF D +++RG  I   L+  I  + 
Sbjct:     8 SCIKRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREAR 67

Query:    73 ISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKL 132
             +S++V S+ YASS WCLDELV+IL CK+   QIV+ VFY VDPSDV+ ++G FG++F K 
Sbjct:    68 VSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKT 127

Query:   133 AERLKVNTEELR-SWRNALKEAATLSGFHSLN 163
              +      EE++  WRNAL   AT++G HSLN
Sbjct:   128 CQG---KNEEVKIRWRNALAHVATIAGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 4.6e-32, P = 4.6e-32
 Identities = 76/148 (51%), Positives = 96/148 (64%)

Query:    17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVI 76
             +YDVF SFRGED ++NF SHL      + I TF DD + R   I   L  AI  S ISV+
Sbjct:    10 RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVV 69

Query:    77 VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
             +FSE+YASS WCLDEL++I+ CK+E    V+PVFY+VDPSD+R +TG FG SF    E  
Sbjct:    70 LFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF---LETC 126

Query:   137 KVNTEELR-SWRNALKEAATLSGFHSLN 163
                TEE + +WR AL +AA + G H  N
Sbjct:   127 CGKTEERQHNWRRALTDAANILGDHPQN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 8.6e-32, P = 8.6e-32
 Identities = 69/157 (43%), Positives = 103/157 (65%)

Query:     8 PCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNA 67
             P    S +  + VF SF GED + +F SH+     R  I  F+D+++ RG+ I   L+ A
Sbjct:    52 PPPSSSCIWTHQVFPSFSGEDVRRDFLSHIQMEFQRMGITPFVDNEIKRGESIGPELLRA 111

Query:    68 IEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGD 127
             I  S I++I+ S +YASS+WCLDELV+I+ C++EY Q V+ +FY+VDPSDV+N TG FG 
Sbjct:   112 IRGSKIAIILLSRNYASSKWCLDELVEIMKCREEYGQTVMAIFYKVDPSDVKNLTGDFGK 171

Query:   128 SFSKL-AERLKVNTEELRSWRNALKEAATLSGFHSLN 163
              F K  A + K   +++  WR A ++ AT++G+HS+N
Sbjct:   172 VFRKTCAGKPK---KDIGRWRQAWEKVATVAGYHSIN 205

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 72/150 (48%), Positives = 94/150 (62%)

Query:    15 VHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDIS 74
             V KY VF SF G D +  F SHL      + I  F D ++ RG  I   LV AI  S +S
Sbjct:     8 VRKYHVFPSFHGSDVRRKFLSHLRFHFAIKGIVAFKDQEIERGQRIGPELVQAIRESRVS 67

Query:    75 VIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAE 134
             ++V S++Y SS WCLDELV+IL CK++  QIV+P+FY +DPSDVR ++G FG +F K   
Sbjct:    68 LVVLSKNYPSSSWCLDELVEILKCKEDQEQIVMPIFYEIDPSDVRKQSGDFGKAFGKTCV 127

Query:   135 RLKVNTEELRS-WRNALKEAATLSGFHSLN 163
                  T+E++  W NAL EAA + G HSLN
Sbjct:   128 G---KTKEVKQRWTNALTEAANIGGEHSLN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 5.6e-31, P = 5.6e-31
 Identities = 75/153 (49%), Positives = 95/153 (62%)

Query:     8 PCVEK--SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLV 65
             PC     S   KYDVF SFRGED + NF SHL      + I TF DD + R   I   L 
Sbjct:     3 PCSSSGSSSCWKYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELK 62

Query:    66 NAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSF 125
              A+  S I V++FS++YASS WCLDELV+IL CK+E  + +IP+FY+V+PSDVRN+TG F
Sbjct:    63 EAVRQSKIFVVIFSKNYASSSWCLDELVEILKCKEE--RRLIPIFYKVNPSDVRNQTGKF 120

Query:   126 GDSFSKLAERLKVNTEELRSWRNALKEAATLSG 158
             G  F +  E    N E    W+ AL EAA ++G
Sbjct:   121 GRGFRETCEGK--NDETQNKWKAALTEAANIAG 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 5.8e-31, P = 5.8e-31
 Identities = 75/150 (50%), Positives = 99/150 (66%)

Query:    10 VEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIE 69
             ++ S    YDVF +FRGED + +  SHL   L R+ I TF D+++ R  +I+  L+ AIE
Sbjct:     1 MKSSSSQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIE 60

Query:    70 ASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSF 129
              S IS++VFS++YASS WCLDELVKI +C ++  Q+VIP+FY+VDPS VR +TG FG  F
Sbjct:    61 NSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVF 120

Query:   130 SKLAERLKVNTE-ELRSWRNALKEAATLSG 158
                 E  K  TE E R W  AL E A L+G
Sbjct:   121 G---ETCKGRTENEKRKWMRALAEVAHLAG 147

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 7.9e-31, P = 7.9e-31
 Identities = 67/160 (41%), Positives = 99/160 (61%)

Query:     2 SMKAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEIS 61
             S+    P    S   K+DVF SF G D +  F SH+  +  R+ I TFID+ + R   I 
Sbjct:    82 SLSLPSPATSVSRNWKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIG 141

Query:    62 ESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNR 121
               L  AI+ S I++++ S  YASS WCLDEL +I+ C++   QIV+ +FY VDP+D++ +
Sbjct:   142 PELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQ 201

Query:   122 TGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHS 161
             TG FG +F+K   R K   E++  WR AL++ AT++G+HS
Sbjct:   202 TGEFGKAFTKTC-RGKPK-EQVERWRKALEDVATIAGYHS 239

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/147 (49%), Positives = 97/147 (65%)

Query:    18 YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIV 77
             YDVF SF GED + +F SHL   L R++I TFID+ + R   I+  L++AI  S IS++V
Sbjct:    11 YDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSAINNSMISIVV 70

Query:    78 FSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLK 137
             FS+ YASS WCL+ELV+I  C KE  QIVIP+FY VDPSDVR +T  FG+ F        
Sbjct:    71 FSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFGEFFKVTCVG-- 128

Query:   138 VNTEELRS-WRNALKEAATLSGFHSLN 163
               TE+++  W  AL+E A+++G  S N
Sbjct:   129 -KTEDVKQQWIEALEEVASIAGHDSKN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.2477.1 hypothetical protein (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-44
pfam01582	135	pfam01582, TIR, TIR domain	7e-43
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	4e-41
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-19
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-13

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  154 bits (391), Expect = 4e-44
 Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 2/146 (1%)

Query: 18  YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIV 77
           YDVF SF GED +  F SH    L R+ I  F D+++ R   +   L  AI  S I+V+V
Sbjct: 13  YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVV 72

Query: 78  FSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLK 137
           FS++YASS WCL+EL++I+ CK+E  Q+VIPVFY +DPS VR +TG FG++F K  +   
Sbjct: 73  FSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT 132

Query: 138 VNTEELRSWRNALKEAATLSGFHSLN 163
              +E   W+ AL + A + G+HS N
Sbjct: 133 E--DEKIQWKQALTDVANILGYHSQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  138 bits (350), Expect = 7e-43
 Identities = 60/135 (44%), Positives = 87/135 (64%), Gaps = 3/135 (2%)

Query: 20  VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLVNAIEASDISVIVF 78
           VFVSF G+D +D F SHL   L  + I+  IDD     G+ I E+L  AIE S  ++++F
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 79  SESYASSRWCLDELVKILDCKKE--YAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           S +YASS WCLDELV+I+ C  E    ++++P+FY+VDPSDVR ++G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 137 KVNTEELRSWRNALK 151
               +++R W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  134 bits (339), Expect = 4e-41
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 17  KYDVFVSFRG-EDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISV 75
           +YDVF+S+ G ED ++ F SHL   L    +  FIDD    G    E +  AIE S I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 76  IVFSESYASSRWCLDELVKILDCKKEYAQI-VIPVFYRVDPSDVRNRTGSFGDSFSKLAE 134
           +V S +YA S WCLDELV  L+   E   + VIP+FY V PSDVR + G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 135 RLKVNTEELRSWRNALKEAATL 156
           +     E+ + W+ AL    + 
Sbjct: 120 K-WPEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 79.9 bits (197), Expect = 3e-19
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 28/162 (17%)

Query: 5   AQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISES 63
           + KPC         DVF++ RG DT+    + LY  L R N++ F+D++ +  GD++ + 
Sbjct: 23  SAKPC---------DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDK 73

Query: 64  LVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTG 123
           + +AI    + V VFS  Y  S +CL EL  I++ KK     VIP+F  V PS +R    
Sbjct: 74  INSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR---- 125

Query: 124 SFGDSFSKLAERLKVNTEELRSWRNALKEAATLSG--FHSLN 163
                   + +      EE+R +  AL+EA    G  F SL 
Sbjct: 126 --------VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLK 159

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 61.4 bits (150), Expect = 4e-13
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 20  VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFS 79
           VF+S+   D +  +   L   L    I+ ++D  +  G++  + +  A+ ++D+ +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 80  ESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDV 118
            +Y +S WC  E    L+  K     +IPV  R++  ++
Sbjct: 59  PAYLASPWCRAEWGAALERGK----RLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.78
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.21
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.68
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.99
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.25
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.63
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	91.69
COG4271	233	Predicted nucleotide-binding protein containing TI	91.17
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	90.56
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	85.44
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	80.93
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	80.44

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=275.70  Aligned_cols=138  Identities=36%  Similarity=0.616  Sum_probs=125.9

Q ss_pred             CCCcCCCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCc
Q 043319            7 KPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASS   85 (164)
Q Consensus         7 ~~~~~~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S   85 (164)
                      +|+++ +....|||||||+++|+|+.|++||+.+|+++||++|+|+. +++|+.+.++|.+||++|+++|+|||++|++|
T Consensus        17 ~~~~~-~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S   95 (187)
T PLN03194         17 YPSSS-SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCES   95 (187)
T ss_pred             cccCC-CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccc
Confidence            34444 45788999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhcceeeeEEEeeCCcccccc-cCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceeec
Q 043319           86 RWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNR-TGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSL  162 (164)
Q Consensus        86 ~wc~~El~~~~~~~~~~~~~iiPVfy~v~p~~v~~~-~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~~  162 (164)
                      .||++||+.|+++.    ..||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|++++
T Consensus        96 ~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         96 YFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             hhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999999863    489999999999999997 432             2478999999999999999999875

>PLN03210 Resistant to P

Probab=100.00  E-value=1.7e-43  Score=332.03  Aligned_cols=151  Identities=45%  Similarity=0.806  Sum_probs=142.9

Q ss_pred             CCCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHH
Q 043319           11 EKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLD   90 (164)
Q Consensus        11 ~~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   90 (164)
                      +.+..++|||||||||+|+|+.|++||+.+|.++||++|.|+++++|+.+.+++.+||++|+++|||||++|++|.||++
T Consensus         6 ~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~   85 (1153)
T PLN03210          6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLN   85 (1153)
T ss_pred             CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHH
Confidence            33357999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceeecC
Q 043319           91 ELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSLN  163 (164)
Q Consensus        91 El~~~~~~~~~~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~~~  163 (164)
                      ||++|++|+++.+++||||||+|+|+|||+|+|.||++|.++++..  +++++++||.||++|++++|+++.+
T Consensus        86 el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         86 ELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             HHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCC
Confidence            9999999999999999999999999999999999999999988653  4789999999999999999999753

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=3.6e-28  Score=179.13  Aligned_cols=132  Identities=32%  Similarity=0.560  Sum_probs=115.5

Q ss_pred             EEEecccCcCcccHHHHHHHHHhcC--CeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHH
Q 043319           20 VFVSFRGEDTQDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKIL   96 (164)
Q Consensus        20 VFISy~~~D~~~~f~~~L~~~L~~~--gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~   96 (164)
                      |||||++.+.+..|+.+|..+|+++  |+++|++++ +.+|..+.+++.++|++|+++|+|+|++|+.|.||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999433578999999999999  999999998 9999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh--cceeeeEEEeeCCcccc-cccCchHHHHHHHHHHhcCC--hHHHHHHHHHHH
Q 043319           97 DCKKEY--AQIVIPVFYRVDPSDVR-NRTGSFGDSFSKLAERLKVN--TEELRSWRNALK  151 (164)
Q Consensus        97 ~~~~~~--~~~iiPVfy~v~p~~v~-~~~g~f~~~f~~~~~~~~~~--~~~~~~W~~Al~  151 (164)
                      ++..+.  ..+|+||||++.+++++ .+.+.|+..|.........+  .+....|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            997654  48999999999999999 78999999988777655443  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=4e-26  Score=166.63  Aligned_cols=137  Identities=41%  Similarity=0.692  Sum_probs=115.9

Q ss_pred             eecEEEeccc-CcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHH
Q 043319           17 KYDVFVSFRG-EDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKI   95 (164)
Q Consensus        17 ~ydVFISy~~-~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   95 (164)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|+.|.||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999999 44557899999999999999999998633333333 999999999999999999999999999999999


Q ss_pred             HHhhhh-hcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 043319           96 LDCKKE-YAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAAT  155 (164)
Q Consensus        96 ~~~~~~-~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~  155 (164)
                      +++..+ ...+||||+++..|+++.++.+.++..+......+..+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 66899999999889899999999999998875565544444 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.78  E-value=1.5e-19  Score=125.68  Aligned_cols=87  Identities=32%  Similarity=0.563  Sum_probs=75.0

Q ss_pred             EEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhh
Q 043319           20 VFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCK   99 (164)
Q Consensus        20 VFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~   99 (164)
                      |||||+++|.  .++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  699999999999999999997799999999999999999999999999999999999999999844  


Q ss_pred             hhhcceeeeEEEe
Q 043319          100 KEYAQIVIPVFYR  112 (164)
Q Consensus       100 ~~~~~~iiPVfy~  112 (164)
                        .+..||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              34589999953

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.21  E-value=3.8e-11  Score=103.15  Aligned_cols=105  Identities=26%  Similarity=0.413  Sum_probs=83.9

Q ss_pred             CCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccC----c-
Q 043319           12 KSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYAS----S-   85 (164)
Q Consensus        12 ~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~----S-   85 (164)
                      -+.+++.||||||++.. ...+++-|...|+-+|++||+|-+ +..|+ +.+.+.+.|..++.+|+|++||.+.    . 
T Consensus       607 a~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~  684 (832)
T KOG3678|consen  607 AMLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDD  684 (832)
T ss_pred             ccccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccc
Confidence            34578899999998764 467999999999999999999999 88886 5668899999999999999999763    3 


Q ss_pred             ---hhHHHHHHHHHHhhhhhcceeeeEEEe---------eCCccccccc
Q 043319           86 ---RWCLDELVKILDCKKEYAQIVIPVFYR---------VDPSDVRNRT  122 (164)
Q Consensus        86 ---~wc~~El~~~~~~~~~~~~~iiPVfy~---------v~p~~v~~~~  122 (164)
                         +|.-.||..++++    +..|||||-.         +.|.|++..+
T Consensus       685 nCeDWVHKEl~~Afe~----~KNIiPI~D~aFE~Pt~ed~iPnDirmi~  729 (832)
T KOG3678|consen  685 NCEDWVHKELKCAFEH----QKNIIPIFDTAFEFPTKEDQIPNDIRMIT  729 (832)
T ss_pred             cHHHHHHHHHHHHHHh----cCCeeeeecccccCCCchhcCcHHHHHHH
Confidence               4555666666665    4489999842         5677777543

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.68  E-value=4.2e-08  Score=71.33  Aligned_cols=89  Identities=21%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             ecEEEecccCcCcccHHHHHHHHHhcC-------Ceee-e---------ecCC-cCCcccchHHHHHhhhcCCeEEEEee
Q 043319           18 YDVFVSFRGEDTQDNFTSHLYSTLCRQ-------NIQT-F---------IDDQ-LNRGDEISESLVNAIEASDISVIVFS   79 (164)
Q Consensus        18 ydVFISy~~~D~~~~f~~~L~~~L~~~-------gi~v-f---------~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S   79 (164)
                      |+|||||++.|.. ..+..|...+...       .+.. |         .+.. ....+.+...|.++|++|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998852 3677777777652       2211 1         1111 22334678899999999999999999


Q ss_pred             cCccCchhHHHHHHHHHHhhhhhcceeeeEEE
Q 043319           80 ESYASSRWCLDELVKILDCKKEYAQIVIPVFY  111 (164)
Q Consensus        80 ~~y~~S~wc~~El~~~~~~~~~~~~~iiPVfy  111 (164)
                      ++...|.|+..|+..+++.    +..||-|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK----GKPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-------EEEEET
T ss_pred             CCcccCcHHHHHHHHHHHC----CCCEEEEEC
Confidence            9999999999999988763    557777765

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.99  E-value=4.1e-05  Score=56.46  Aligned_cols=64  Identities=23%  Similarity=0.366  Sum_probs=51.6

Q ss_pred             cEEEecccCcCc-ccHHHHHHHHHhcC-CeeeeecCC-cC--CcccchHHHHHhhhcCCeEEEEeecCc
Q 043319           19 DVFVSFRGEDTQ-DNFTSHLYSTLCRQ-NIQTFIDDQ-LN--RGDEISESLVNAIEASDISVIVFSESY   82 (164)
Q Consensus        19 dVFISy~~~D~~-~~f~~~L~~~L~~~-gi~vf~d~~-~~--~G~~~~~~i~~aI~~S~~~Ivv~S~~y   82 (164)
                      .|||||++.... ...|..|...|++. |+.|.+|.- ..  ++..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985443 36799999999999 999999986 53  355666667778999999999999554

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.25  E-value=0.001  Score=48.32  Aligned_cols=96  Identities=21%  Similarity=0.237  Sum_probs=69.0

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCc-------------cC
Q 043319           19 DVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESY-------------AS   84 (164)
Q Consensus        19 dVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y-------------~~   84 (164)
                      .|||.|+ .|.  ..+..+...|+..|+.+..-.. ...|..+.+.+.+.+.+++.+|++++|+=             ..
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 443  6888999999988887666555 78999999999999999999999999852             22


Q ss_pred             chhHHHHHHHHHHhhhhhcceeeeEEE-ee-CCcccc
Q 043319           85 SRWCLDELVKILDCKKEYAQIVIPVFY-RV-DPSDVR  119 (164)
Q Consensus        85 S~wc~~El~~~~~~~~~~~~~iiPVfy-~v-~p~~v~  119 (164)
                      -+..+.|+..++.+.  +..+++-+.- ++ .|||+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCccCCcccC
Confidence            345677888877642  2234444432 12 356654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.63  E-value=0.04  Score=36.77  Aligned_cols=66  Identities=17%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCc-CCcccchHHHHHhhhcCCeEEEEeecCccCc
Q 043319           19 DVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQL-NRGDEISESLVNAIEASDISVIVFSESYASS   85 (164)
Q Consensus        19 dVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~-~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S   85 (164)
                      .||||-.-.|- +.--..|.+.+.+.|.....-+.+ ..+....+.+.+.|++|++.|.++...|-..
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            38999877775 345677888888877655443332 3355666788899999999999999998764

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=91.69  E-value=0.26  Score=40.04  Aligned_cols=101  Identities=18%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             CCCceecEEEecccCcCcccHHHHHHHHHhc--CCeeeeecCC----cCCcccchHHHHHhhh--cCCeEEEEeecCccC
Q 043319           13 SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCR--QNIQTFIDDQ----LNRGDEISESLVNAIE--ASDISVIVFSESYAS   84 (164)
Q Consensus        13 s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~vf~d~~----~~~G~~~~~~i~~aI~--~S~~~Ivv~S~~y~~   84 (164)
                      +..+.||+=|||.|+- | ..++....+++.  .-+..|+|-.    +-+|. +. .++.-+-  .|++.+|....+|..
T Consensus       173 ~~~~~~DiG~SFaGEA-R-~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         173 SSEKPVDSGISFAGEA-R-NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             ccccccceeeEeehhh-h-hHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEE
Confidence            4678899999999875 3 799999999984  3467788865    33443 22 2333322  588899999999999


Q ss_pred             chhHHHHHHHHHHhhhhhcceeeeEEE-eeCCcccc
Q 043319           85 SRWCLDELVKILDCKKEYAQIVIPVFY-RVDPSDVR  119 (164)
Q Consensus        85 S~wc~~El~~~~~~~~~~~~~iiPVfy-~v~p~~v~  119 (164)
                      -.||.-|...+.+...  -..+.||.| ++.-+-+.
T Consensus       249 K~~c~~E~~~~r~~~~--~d~~~rI~~~~~d~~a~d  282 (329)
T COG4916         249 KSTCHIEGLEGRLNPI--LDTGFRIKYLYADNIAID  282 (329)
T ss_pred             eeeeccchhhcccccc--ccccceEEEEecCCcccc
Confidence            9999999877644321  235666665 44444443

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=91.17  E-value=0.92  Score=35.57  Aligned_cols=96  Identities=20%  Similarity=0.221  Sum_probs=66.0

Q ss_pred             cEEEecccCcCcccHHHHHHHHHhc-CC-eeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCcc-------------
Q 043319           19 DVFVSFRGEDTQDNFTSHLYSTLCR-QN-IQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYA-------------   83 (164)
Q Consensus        19 dVFISy~~~D~~~~f~~~L~~~L~~-~g-i~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~-------------   83 (164)
                      .|||-|+++    ..+.....+|.+ .. ..+|.|.-+..|+.+.+.+.+-|.+++.+|++.+|+=.             
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            999999764    366666666653 33 56677766889999999999999999999999999843             


Q ss_pred             -CchhHHHHHHHHHHhhhhhcceeeeEEE---ee-CCccccc
Q 043319           84 -SSRWCLDELVKILDCKKEYAQIVIPVFY---RV-DPSDVRN  120 (164)
Q Consensus        84 -~S~wc~~El~~~~~~~~~~~~~iiPVfy---~v-~p~~v~~  120 (164)
                       .-.....||...+-+.  ++.+|+-+.-   +| -|||+..
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEecccccccCccccCc
Confidence             2334667887776642  2334443322   12 4777754

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=90.56  E-value=2.4  Score=29.46  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             ccHHHHHHHHHhcCCeeeeecCC--cC---Cccc----chHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHh
Q 043319           31 DNFTSHLYSTLCRQNIQTFIDDQ--LN---RGDE----ISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDC   98 (164)
Q Consensus        31 ~~f~~~L~~~L~~~gi~vf~d~~--~~---~G~~----~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~   98 (164)
                      ..+...+.+.|++.|+.++...+  ..   .+..    +-+.-.++|++|+++|+++...- .+.=+.-|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            56889999999999999988764  21   1222    33344568999999999998765 556688899998764

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=85.44  E-value=5.3  Score=25.21  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             HHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhhcceee
Q 043319           35 SHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEYAQIVI  107 (164)
Q Consensus        35 ~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~ii  107 (164)
                      .-|++.|++.|+.|-....          ..+++....-.+++++|.+.-+.  -.++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4567788888988855432          12344557889999999966553  2444444444445555544

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=80.93  E-value=13  Score=25.23  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=42.7

Q ss_pred             HHHHHHHHhcCCeeeeecCCc--CCcccchHHH---HHhhhcCCeEEEEeecCccCchhHHHHHHHHHHh
Q 043319           34 TSHLYSTLCRQNIQTFIDDQL--NRGDEISESL---VNAIEASDISVIVFSESYASSRWCLDELVKILDC   98 (164)
Q Consensus        34 ~~~L~~~L~~~gi~vf~d~~~--~~G~~~~~~i---~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~   98 (164)
                      .....+.|+..|..|.---.+  ..|..+.+-+   ...|.+|+..++  =|++-+|.=|.-|...+...
T Consensus        18 f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~l   85 (92)
T PF14359_consen   18 FNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKKL   85 (92)
T ss_pred             HHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHHC
Confidence            345778889999766543333  5555544433   345667885444  49999999999999888653

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=80.44  E-value=7.1  Score=25.29  Aligned_cols=60  Identities=12%  Similarity=0.172  Sum_probs=38.0

Q ss_pred             ecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecC
Q 043319           18 YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSES   81 (164)
Q Consensus        18 ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~   81 (164)
                      ++|+|...+++. ...+..+...|++.|+++-+|..   +..+...+..|-+.---.++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            677777655433 45788899999999999998764   2344445555544333344444443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		5e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		3e-30
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		3e-05

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 94/143 (65%), Gaps = 3/143 (2%)
Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLVNAIEASDISV 75
           KYDVF+SFRG DT+ NF S LY  L R++I+TF DD +L  G   S  L + IE S  +V
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 76  IVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER 135
           +V SE+YA+S WCLDELV I+D +K+ +  V+P+FY V+P+ VR +TG   + F K A R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 136 LKVNTEELRSWRNALKEAATLSG 158
              + E++  WR AL   A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/155 (43%), Positives = 101/155 (65%), Gaps = 10/155 (6%)
Query: 8   PCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLVN 66
           P VE      Y+VF+SFRG DT++ FT  LY +L R  I TF DD +L +G EI  +L+ 
Sbjct: 32  PSVE------YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLR 85
Query: 67  AIEASDISVIVFSESYASSRWCLDELVKILDCKKEYA-QIVIPVFYRVDPSDVRNRTGSF 125
           AI+ S I V + S  YA S+WCL EL +I+  ++E   +I++P+FY VDPSDVR++TG +
Sbjct: 86  AIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCY 145
Query: 126 GDSFSKLAERLKVNTEELRSWRNALKEAATLSGFH 160
             +F K A   K + + +++W++ALK+   L G+H
Sbjct: 146 KKAFRKHAN--KFDGQTIQNWKDALKKVGDLKGWH 178

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 18  YDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLVNAIEASDISVI 76
           +D+F+S   ED  D F   L  TL     + + DD  L  GD +  S+   + +S   ++
Sbjct: 21  HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 77  VFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERL 136
           V S  +    W   EL  +   +      ++P++++V     ++   SF  +   +A++L
Sbjct: 80  VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVS----KDEVASFSPT---MADKL 132
Query: 137 KVNT 140
             NT
Sbjct: 133 AFNT 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-84
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-81
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-68
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	9e-19
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-08
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2js7_A	160	Myeloid differentiation primary response protein M	2e-05
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	2e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  245 bits (627), Expect = 1e-84
 Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 3/146 (2%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISV 75
           KYDVF+SFRG DT+ NF S LY  L R++I+TF DD+ L  G   S  L + IE S  +V
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query: 76  IVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER 135
           +V SE+YA+S WCLDELV I+D +K+ +  V+P+FY V+P+ VR +TG   + F K A R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127

Query: 136 LKVNTEELRSWRNALKEAATLSGFHS 161
              + E++  WR AL   A LSG  S
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSGDCS 151

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  238 bits (609), Expect = 2e-81
 Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 4/149 (2%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISV 75
           +Y+VF+SFRG DT++ FT  LY +L R  I TF DD  L +G EI  +L+ AI+ S I V
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94

Query: 76  IVFSESYASSRWCLDELVKILDCKKEY-AQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAE 134
            + S  YA S+WCL EL +I+  ++E   +I++P+FY VDPSDVR++TG +  +F K A 
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154

Query: 135 RLKVNTEELRSWRNALKEAATLSGFHSLN 163
           +   + + +++W++ALK+   L G+H   
Sbjct: 155 K--FDGQTIQNWKDALKKVGDLKGWHIGK 181

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  202 bits (515), Expect = 6e-68
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISV 75
            +D+F+S   ED   +F   L  TL     + + DD  L  GD +  S+   + +S   +
Sbjct: 20  PHDIFISHAWEDK-ADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78

Query: 76  IVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAER 135
           +V S  +    W   EL  +   +      ++P++++V   +V + + +  D  +     
Sbjct: 79  VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST 138

Query: 136 LKVNTEELRSWRNAL 150
             V  +E+ +   A+
Sbjct: 139 KSV--DEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 76.6 bits (189), Expect = 9e-19
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEASDI 73
            YDV V    ED        L S L     +++ F+  +    G  I   L  A+ +S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 74  SVIVFSESYASSRWCLDELVKILDCKKEYAQIVIPVFYRVD----PSDVRNRT 122
            V++ +  +    WC  ++++ L          IP+   +     P ++R   
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMY 120

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 20/138 (14%)

Query: 17  KYDVFVSFRGEDT---------QDNFTSHLYSTL--CRQNIQTFIDD-QLNRGDEISESL 64
            YD ++S+   D          ++ F   +   +       + FI D  L       E +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 65  VNAIEASDISVIVFSESYA-SSRWCLDELVKIL-DCKKEYAQIVIPVFYRVDPSDVRNRT 122
              ++ S   +IV + +Y     W + EL   L +        VI +        +    
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNY-- 119

Query: 123 GSFGDSFSKLAERLKVNT 140
                    L   +K+ T
Sbjct: 120 ----QEVEALKHTIKLLT 133

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEASDI 73
           ++  F+S+   D      + L   L     +I   + +   + G  ISE++V+ IE S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 74  SVIVFSESYASSRWCLDELVKILDCK-KEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKL 132
           S+ V S ++  + WC  E          E +  +I +     P             + KL
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT------RYHKL 147

Query: 133 AERLKVNT 140
              L+   
Sbjct: 148 KALLEKKA 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-06
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 30/147 (20%)

Query: 28  DTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSR- 86
           D +     + Y  +       F+D+  +  D + +   + +   +I  I+     A S  
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDN-FDCKD-VQDMPKSILSKEEIDHII-MSKDAVSGT 64

Query: 87  ----WCL--------DELVKILDCKKEYAQIVIPVFYR-VDPS-------DVRNRTGSFG 126
               W L         + V+ +  +  Y  ++ P+      PS       + R+R  +  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 127 DSFSKL-AERLKVNTEELRSWRNALKE 152
             F+K    RL    +     R AL E
Sbjct: 124 QVFAKYNVSRL----QPYLKLRQALLE 146

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEA-SD 72
           ++D F+ +   D Q  F   +   L      ++  + D+ +  G  +       IE    
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 73  ISVIVFSESYASSRWCLDELVKIL-DCKKEYAQIVIPVFYRVDPSDVR 119
             V+V S+ Y  S+ C  +    L      + + +IP+ Y+    +  
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFP 121

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 11/127 (8%)

Query: 18  YDVFVSFRGEDTQ---DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDIS 74
           YD FVS+   D     +     L +      +     D    G  I ++++++IE S  +
Sbjct: 6   YDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKSHKT 64

Query: 75  VIVFSESYASSRWCLDELVKILD-CKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLA 133
           V V SE++  S W   EL         E     I +        +  +  +    F KL 
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILL----EPIEKK--AIPQRFXKLR 118

Query: 134 ERLKVNT 140
           + +   T
Sbjct: 119 KIMNTKT 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
2js7_A	160	Myeloid differentiation primary response protein M	99.92
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.31
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.99
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	92.93
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	89.64
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	82.61

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1e-53  Score=331.05  Aligned_cols=158  Identities=41%  Similarity=0.741  Sum_probs=140.0

Q ss_pred             CCCCCCcCCCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCc
Q 043319            4 KAQKPCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESY   82 (164)
Q Consensus         4 ~~~~~~~~~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y   82 (164)
                      ++++++++.+++++||||||||++|+|+.|++||+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|||+||
T Consensus        22 ~~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nY  101 (204)
T 3ozi_A           22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGY  101 (204)
T ss_dssp             ------------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTG
T ss_pred             ccCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccc
Confidence            34444455557899999999999999999999999999999999999987 99999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHhhhh-hcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceee
Q 043319           83 ASSRWCLDELVKILDCKKE-YAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHS  161 (164)
Q Consensus        83 ~~S~wc~~El~~~~~~~~~-~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~  161 (164)
                      ++|.||++||+.|++|.++ ++++||||||+|+|++||+|+|.||++|.++++++  +++++++||.||++|++++||++
T Consensus       102 a~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~  179 (204)
T 3ozi_A          102 ADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHI  179 (204)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEE
T ss_pred             ccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceec
Confidence            9999999999999999865 57899999999999999999999999999999876  47899999999999999999998


Q ss_pred             cC
Q 043319          162 LN  163 (164)
Q Consensus       162 ~~  163 (164)
                      .+
T Consensus       180 ~~  181 (204)
T 3ozi_A          180 GK  181 (204)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6e-53  Score=321.16  Aligned_cols=148  Identities=48%  Similarity=0.789  Sum_probs=127.7

Q ss_pred             CCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHH
Q 043319           13 SGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDE   91 (164)
Q Consensus        13 s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E   91 (164)
                      |.+++||||||||++|+|+.|++||+.+|+++||++|+|++ +.+|+.+.++|.+||++|+++|+|||+||++|.||++|
T Consensus         4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E   83 (176)
T 3jrn_A            4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE   83 (176)
T ss_dssp             ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred             CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence            45789999999999999989999999999999999999987 99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHhhcccceeec
Q 043319           92 LVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEAATLSGFHSL  162 (164)
Q Consensus        92 l~~~~~~~~~~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v~~~~G~~~~  162 (164)
                      |..|++|.++++++||||||+|+|++||+|+|.||++|.+++++  .+++++++||.||++|++++|+++.
T Consensus        84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999999888999999999999999999999999999999987  5689999999999999999999873

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.1e-36  Score=227.07  Aligned_cols=136  Identities=20%  Similarity=0.344  Sum_probs=118.1

Q ss_pred             CCCCceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHH
Q 043319           12 KSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCLD   90 (164)
Q Consensus        12 ~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   90 (164)
                      ....++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            34578999999999999 568999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcceeeeEEEeeCCcccccccCchHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 043319           91 ELVKILDCKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKLAERLKVNTEELRSWRNALKEA  153 (164)
Q Consensus        91 El~~~~~~~~~~~~~iiPVfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~~~W~~Al~~v  153 (164)
                      ||..++++..+++.+||||||+|+|++|++|.|.||++|....     ....+.++-..|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~-----~~~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT-----STKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET-----TTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc-----CcccHHHHHHHHHHH
Confidence            9999999877778899999999999999999999998775322     133455555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=3.2e-30  Score=190.88  Aligned_cols=130  Identities=19%  Similarity=0.300  Sum_probs=92.8

Q ss_pred             CCCCceecEEEecccCcCcccHHHHHHHHHhc--CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhH
Q 043319           12 KSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWC   88 (164)
Q Consensus        12 ~s~~~~ydVFISy~~~D~~~~f~~~L~~~L~~--~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   88 (164)
                      ...++.|||||||+++|+  .|+.+|..+|++  .|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            335789999999999996  589999999998  5999999988 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcceeeeEEEeeCCccc----ccccC----chHHHHHHHHHHhcCChHHHHHHHHHH
Q 043319           89 LDELVKILDCKKEYAQIVIPVFYRVDPSDV----RNRTG----SFGDSFSKLAERLKVNTEELRSWRNAL  150 (164)
Q Consensus        89 ~~El~~~~~~~~~~~~~iiPVfy~v~p~~v----~~~~g----~f~~~f~~~~~~~~~~~~~~~~W~~Al  150 (164)
                      +.|+..|+.+...+..+||||||+|+++++    +....    .....|..+       .+.+.+|+.||
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            999999999863333478899999986655    43322    123444443       47788898875

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=6.6e-27  Score=173.41  Aligned_cols=104  Identities=21%  Similarity=0.334  Sum_probs=92.4

Q ss_pred             CCceecEEEecccCcCcccHHHH-HHHHHhcC--CeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhHH
Q 043319           14 GVHKYDVFVSFRGEDTQDNFTSH-LYSTLCRQ--NIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWCL   89 (164)
Q Consensus        14 ~~~~ydVFISy~~~D~~~~f~~~-L~~~L~~~--gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   89 (164)
                      .++.|||||||+++|.  .|+.+ |...|++.  |+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4688999999999996  69986 99999986  999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhhhcceeeeEEEe-eCCcccc
Q 043319           90 DELVKILDC-KKEYAQIVIPVFYR-VDPSDVR  119 (164)
Q Consensus        90 ~El~~~~~~-~~~~~~~iiPVfy~-v~p~~v~  119 (164)
                      .|+..|+++ .++++.+||||||+ +.+.++.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999864 45567899999994 5554443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.92  E-value=3.9e-26  Score=171.18  Aligned_cols=100  Identities=19%  Similarity=0.295  Sum_probs=90.6

Q ss_pred             CCceecEEEecccCcCcccHHHHHHHHHhcC--CeeeeecCC-cCCcccchHHHHHhhh-cCCeEEEEeecCccCchhHH
Q 043319           14 GVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLVNAIE-ASDISVIVFSESYASSRWCL   89 (164)
Q Consensus        14 ~~~~ydVFISy~~~D~~~~f~~~L~~~L~~~--gi~vf~d~~-~~~G~~~~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~   89 (164)
                      .++.|||||||+++|.  .||.+|..+|++.  |+++|++++ +.||+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus        13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            4689999999999994  7999999999984  699999988 9999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319           90 DELVKILDCK-KEYAQIVIPVFYRVDP  115 (164)
Q Consensus        90 ~El~~~~~~~-~~~~~~iiPVfy~v~p  115 (164)
                      .|+..|+++. ++++.+||||+|+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999874 4556799999997543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=3.9e-26  Score=173.99  Aligned_cols=106  Identities=21%  Similarity=0.364  Sum_probs=88.5

Q ss_pred             CCCCCceecEEEecccCcCcccHHHH-HHHHHhc--CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCch
Q 043319           11 EKSGVHKYDVFVSFRGEDTQDNFTSH-LYSTLCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSR   86 (164)
Q Consensus        11 ~~s~~~~ydVFISy~~~D~~~~f~~~-L~~~L~~--~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~   86 (164)
                      ....++.|||||||+++|.  .||.. |...|++  .|+++|++++ +.||+.+.++|.++|++|+++|+|+||+|++|.
T Consensus        29 ~~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~  106 (178)
T 2j67_A           29 QLKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE  106 (178)
T ss_dssp             -CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred             ccCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence            3456789999999999995  79975 9999998  8999999998 999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh-hhhhcceeeeEEEe-eCCccc
Q 043319           87 WCLDELVKILDC-KKEYAQIVIPVFYR-VDPSDV  118 (164)
Q Consensus        87 wc~~El~~~~~~-~~~~~~~iiPVfy~-v~p~~v  118 (164)
                      ||+.|+..|+++ .++++.+||||||+ +.+.++
T Consensus       107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l  140 (178)
T 2j67_A          107 WCHYEFYFAHHNLFHENSDHIILILLEPIPFYCI  140 (178)
T ss_dssp             GGGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence            999999999865 35567799999995 444444

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=2.7e-25  Score=166.50  Aligned_cols=100  Identities=21%  Similarity=0.302  Sum_probs=88.6

Q ss_pred             ceecEEEecccCcC---------cccHHHHHHH-HHh-cCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319           16 HKYDVFVSFRGEDT---------QDNFTSHLYS-TLC-RQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYA   83 (164)
Q Consensus        16 ~~ydVFISy~~~D~---------~~~f~~~L~~-~L~-~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~   83 (164)
                      +.|||||||+++|.         ++.|+.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         3579988665 699 79999999998 999999999999999999999999999997


Q ss_pred             -CchhHHHHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319           84 -SSRWCLDELVKILDCK-KEYAQIVIPVFYRVDP  115 (164)
Q Consensus        84 -~S~wc~~El~~~~~~~-~~~~~~iiPVfy~v~p  115 (164)
                       .|.||+.|+..|+++. ++++..||||+|+-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999875 5567899999986443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=2.5e-19  Score=162.30  Aligned_cols=103  Identities=17%  Similarity=0.315  Sum_probs=91.5

Q ss_pred             CCCCCceecEEEecccCcCcccHH-HHHHHHHhc-----CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319           11 EKSGVHKYDVFVSFRGEDTQDNFT-SHLYSTLCR-----QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYA   83 (164)
Q Consensus        11 ~~s~~~~ydVFISy~~~D~~~~f~-~~L~~~L~~-----~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~   83 (164)
                      .....+.|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+
T Consensus       664 ~~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~  741 (844)
T 3j0a_A          664 TEPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFL  741 (844)
T ss_dssp             GSSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHH
T ss_pred             ccccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccc
Confidence            3446789999999999995  577 779999985     5899999999 999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhh-hhhcceeeeEEEeeCC
Q 043319           84 SSRWCLDELVKILDCK-KEYAQIVIPVFYRVDP  115 (164)
Q Consensus        84 ~S~wc~~El~~~~~~~-~~~~~~iiPVfy~v~p  115 (164)
                      .|+||..|+..|+.+. ++++.+||||||+.-|
T Consensus       742 ~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          742 RDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             HHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             cChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999999998774 5677899999996443

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.31  E-value=5.3e-07  Score=63.14  Aligned_cols=72  Identities=8%  Similarity=0.023  Sum_probs=52.7

Q ss_pred             ceecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHH
Q 043319           16 HKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKI   95 (164)
Q Consensus        16 ~~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   95 (164)
                      .+|.+||||+.+| .   ...|...|.+.|+..- |              +.|+.|++.|++.++....|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            4699999999988 2   3445555543344322 2              578999999999999999999999999877


Q ss_pred             HHhhhhhcceeeeEE
Q 043319           96 LDCKKEYAQIVIPVF  110 (164)
Q Consensus        96 ~~~~~~~~~~iiPVf  110 (164)
                      .+    .+..||-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            64    344666654

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.99  E-value=0.0033  Score=47.41  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=67.2

Q ss_pred             cHHHHHHHHHhcCCeeeeecCC-c----CC----cccchHHHHHhhhcCCeEEEEeecCccCchhHHHHHHHHHHhhhhh
Q 043319           32 NFTSHLYSTLCRQNIQTFIDDQ-L----NR----GDEISESLVNAIEASDISVIVFSESYASSRWCLDELVKILDCKKEY  102 (164)
Q Consensus        32 ~f~~~L~~~L~~~gi~vf~d~~-~----~~----G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~  102 (164)
                      .....|..--.+..+--|.|-+ .    .-    -..|...+.+.|+.|+.+|+++|++...|.|...|+..+++   +.
T Consensus        32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~  108 (189)
T 3hyn_A           32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TK  108 (189)
T ss_dssp             HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TT
T ss_pred             HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hc
Confidence            4556666655555554566643 2    22    23467788889999999999999999999999999998872   23


Q ss_pred             cceeeeEEEeeC-CcccccccCchHHHHHHHHH
Q 043319          103 AQIVIPVFYRVD-PSDVRNRTGSFGDSFSKLAE  134 (164)
Q Consensus       103 ~~~iiPVfy~v~-p~~v~~~~g~f~~~f~~~~~  134 (164)
                      +.+||-|..+-+ .+++..-.|.|......++-
T Consensus       109 ~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~wp  141 (189)
T 3hyn_A          109 GLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWD  141 (189)
T ss_dssp             CCCEEEEETTCCSGGGTBCTTSCBCHHHHHHHH
T ss_pred             CCcEEEEECCccccchhhhccccchhhHhhcCC
Confidence            558887765422 33555445655555544443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=92.93  E-value=0.48  Score=34.64  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=50.7

Q ss_pred             ccHHHHHHHHHhcCCeeeeecCC--cCCcccchHHHHHhhhcCCeEEEEeec--CccCchhHHHHHHHHHHhh
Q 043319           31 DNFTSHLYSTLCRQNIQTFIDDQ--LNRGDEISESLVNAIEASDISVIVFSE--SYASSRWCLDELVKILDCK   99 (164)
Q Consensus        31 ~~f~~~L~~~L~~~gi~vf~d~~--~~~G~~~~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~~   99 (164)
                      ..+...+.+.|++.|+.|+.-.+  ...+..+-+.-.++|++|+++|++++|  .-..+.-+..|+..+....
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg   98 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   98 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence            36889999999999999888544  222233444447899999999999996  3334556888999887653

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=89.64  E-value=2.1  Score=31.04  Aligned_cols=82  Identities=16%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             CCCceecEEEecccC-cCc-ccHHHHHHHHHhcCCeeeeecCCcCC-----cc-------cchHHHHHhhhcCCeEEEEe
Q 043319           13 SGVHKYDVFVSFRGE-DTQ-DNFTSHLYSTLCRQNIQTFIDDQLNR-----GD-------EISESLVNAIEASDISVIVF   78 (164)
Q Consensus        13 s~~~~ydVFISy~~~-D~~-~~f~~~L~~~L~~~gi~vf~d~~~~~-----G~-------~~~~~i~~aI~~S~~~Ivv~   78 (164)
                      +.+.+..|||+=.-. +.. ......+.+.|++.| .|+.+....+     |.       .+...-.+.|++|+++|+++
T Consensus         7 ~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~   85 (165)
T 2khz_A            7 GEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV   85 (165)
T ss_dssp             SSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             CCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence            345556799984322 111 225588999999999 8865443222     21       12223347899999999999


Q ss_pred             ecCccCchhHHHHHHHHHHh
Q 043319           79 SESYASSRWCLDELVKILDC   98 (164)
Q Consensus        79 S~~y~~S~wc~~El~~~~~~   98 (164)
                      +   ..+.-+..|+..+...
T Consensus        86 ~---~~d~Gt~~EiGyA~al  102 (165)
T 2khz_A           86 T---QPSLGVGYELGRAVAL  102 (165)
T ss_dssp             S---SCCHHHHHHHHHHHHT
T ss_pred             C---CCCCCHHHHHHHHHHC
Confidence            7   4567788999988764

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=82.61  E-value=7.9  Score=27.86  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             cEEEe--cccCcCcccHHHHHHHHHhcCCeeeeecCCcC-----Ccc-------cchHHHHHhhhcCCeEEEEeecCccC
Q 043319           19 DVFVS--FRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLN-----RGD-------EISESLVNAIEASDISVIVFSESYAS   84 (164)
Q Consensus        19 dVFIS--y~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~-----~G~-------~~~~~i~~aI~~S~~~Ivv~S~~y~~   84 (164)
                      .|||+  +++.+....+...+.+.|++.| .|+...--.     .|+       .+.+.-.+.|++|++.|.+++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            45665  2332223367799999999999 675422111     122       144455678999999999988   55


Q ss_pred             chhHHHHHHHHHHh
Q 043319           85 SRWCLDELVKILDC   98 (164)
Q Consensus        85 S~wc~~El~~~~~~   98 (164)
                      |.-...|+..+...
T Consensus        80 d~Gt~~EiG~A~al   93 (152)
T 4fyk_A           80 SLGVGYELGRAVAL   93 (152)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHc
Confidence            67788899988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-20
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-17

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (198), Expect = 2e-20
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 8   PCVEKSGVHKYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVN 66
           P  E     ++  F+S+ G D+     + L   L ++ +Q  + ++    G  I E+++ 
Sbjct: 3   PLEELQRNLQFHAFISYSGHDS-FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIIT 61

Query: 67  AIEASDISVIVFSESYASSRWCLDELVKILDCK-KEYAQIVIPVFYRVDPSDVRNRTGSF 125
            IE S  S+ V S ++  S WC  EL         E +  +I +     P          
Sbjct: 62  CIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIP----- 116

Query: 126 GDSFSKLAERLKVNT 140
             S+ KL   +   T
Sbjct: 117 -SSYHKLKSLMARRT 130

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 1e-17
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 17  KYDVFVSFRGEDTQDNFTSHLYSTL--CRQNIQTFIDDQ-LNRGDEISESLVNAIEASDI 73
            YD FVS+   D      + +   L       +  +  +    G  I ++++++IE S  
Sbjct: 5   CYDAFVSYSERDA-YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 74  SVIVFSESYASSRWCLDELVKILD-CKKEYAQIVIPVFYRVDPSDVRNRTGSFGDSFSKL 132
           +V V SE++  S WC  EL         E     I +                   F KL
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIP------QRFCKL 117

Query: 133 AERLKVNT 140
            + +   T
Sbjct: 118 RKIMNTKT 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.91
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	92.44
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.89
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	80.9

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-25  Score=165.67  Aligned_cols=106  Identities=24%  Similarity=0.421  Sum_probs=95.9

Q ss_pred             CCCCcCCCCCceecEEEecccCcCcccHH-HHHHHHHhcCCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCcc
Q 043319            6 QKPCVEKSGVHKYDVFVSFRGEDTQDNFT-SHLYSTLCRQNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYA   83 (164)
Q Consensus         6 ~~~~~~~s~~~~ydVFISy~~~D~~~~f~-~~L~~~L~~~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~   83 (164)
                      ++|.....++++|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+
T Consensus         1 ~~pl~~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~   78 (161)
T d1fyva_           1 NIPLEELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFV   78 (161)
T ss_dssp             CCCSTTSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHH
T ss_pred             CCChhHcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccc
Confidence            467888888999999999999994  577 5799999999999999998 999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhh-hhhcceeeeEEEee
Q 043319           84 SSRWCLDELVKILDCK-KEYAQIVIPVFYRV  113 (164)
Q Consensus        84 ~S~wc~~El~~~~~~~-~~~~~~iiPVfy~v  113 (164)
                      .|.||..|+..++++. +++..++|||+++-
T Consensus        79 ~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          79 QSEWCHYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             HHTSHHHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             cChHHHHHHHHHHHHHHHcCCCceeEEEEec
Confidence            9999999999998764 45667999999863

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-24  Score=158.12  Aligned_cols=104  Identities=23%  Similarity=0.375  Sum_probs=89.9

Q ss_pred             CCCceecEEEecccCcCcccHH-HHHHHHHhc--CCeeeeecCC-cCCcccchHHHHHhhhcCCeEEEEeecCccCchhH
Q 043319           13 SGVHKYDVFVSFRGEDTQDNFT-SHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLVNAIEASDISVIVFSESYASSRWC   88 (164)
Q Consensus        13 s~~~~ydVFISy~~~D~~~~f~-~~L~~~L~~--~gi~vf~d~~-~~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   88 (164)
                      |+++.|||||||+++|.  .|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            56889999999999994  566 568999986  4899999988 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhhcceeeeEEEe-eCCccc
Q 043319           89 LDELVKILDCK-KEYAQIVIPVFYR-VDPSDV  118 (164)
Q Consensus        89 ~~El~~~~~~~-~~~~~~iiPVfy~-v~p~~v  118 (164)
                      ..|+..++... ++++.+||||+++ +...++
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~  110 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhhc
Confidence            99998886653 5567899999996 333344

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.44  E-value=0.28  Score=33.79  Aligned_cols=72  Identities=13%  Similarity=0.112  Sum_probs=53.2

Q ss_pred             cCcccHHHHHHHHHhcCCeeeeecCC--cCCcccchHHHHHhhhcCCeEEEEeec--CccCchhHHHHHHHHHHhh
Q 043319           28 DTQDNFTSHLYSTLCRQNIQTFIDDQ--LNRGDEISESLVNAIEASDISVIVFSE--SYASSRWCLDELVKILDCK   99 (164)
Q Consensus        28 D~~~~f~~~L~~~L~~~gi~vf~d~~--~~~G~~~~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~~   99 (164)
                      |.+..+...+...|++.|+.++.-.+  ......|-..-.+.|++|+++|.++++  .-..+.=+..|+..+....
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg   90 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   90 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence            33346889999999999999997544  333334556667889999999999985  2234556888999988753

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.89  E-value=0.26  Score=30.93  Aligned_cols=61  Identities=15%  Similarity=0.190  Sum_probs=44.9

Q ss_pred             eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeecC
Q 043319           17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSES   81 (164)
Q Consensus        17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~~   81 (164)
                      ..+|||..-++.. ...+..|...|++.|+++.+|..   +..+...+..|-+.---.++|+.++
T Consensus         3 ~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           3 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            4689999888765 47899999999999999999874   4456666777655444455555543

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.90  E-value=1  Score=27.73  Aligned_cols=60  Identities=20%  Similarity=0.286  Sum_probs=42.2

Q ss_pred             eecEEEecccCcCcccHHHHHHHHHhcCCeeeeecCCcCCcccchHHHHHhhhcCCeEEEEeec
Q 043319           17 KYDVFVSFRGEDTQDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLVNAIEASDISVIVFSE   80 (164)
Q Consensus        17 ~ydVFISy~~~D~~~~f~~~L~~~L~~~gi~vf~d~~~~~G~~~~~~i~~aI~~S~~~Ivv~S~   80 (164)
                      ..||||.--+++. ...+..|...|++.|+++-+|..   +..+...+..|-+.---.++|+.+
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            4689987755543 47889999999999999988764   445666677765554445555543