Citrus Sinensis ID: 043461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
Protein Sequence
MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIFFQN
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccEEcccccccccHHHHHHHHEEccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEccccHcHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
maashtssssthHQLLQSKYDVFlsfrgedtrnnFTDHLHAALIRNgfiafkddetlerGNEISSELSQAIEESNVSIVILSknyasspwcLDELAKIVECGNKRKDRKVFAVFygvdpadartqkgeDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGwhlqdsgdvspfacykhthvtsleisssIFFQN
Flexible Loop (DISEMBL)
maashtssssthhqLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYgvdpadartqkgEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIFFQN
Low Complexity Region (SEG)
MAAshtssssthhqllqsKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIFFQN
Disordered region (IsUnstruct)
***************LQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDD******************ESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIF***
Disordered Region (DISOPRED)
******************KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEE*****EKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSI****
Disordered Region (DISEMBL)
**************LLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIFFQN
Disordered Region (DISPRO)
***************LQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFACYKHTHVTSLEISSSIFFQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	196	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.724	0.124	0.493	4e-34
O82500	1095	Putative disease resistan	no	no	0.739	0.132	0.453	7e-28
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.729	0.109	0.436	5e-25
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.806	0.446	0.345	1e-17
Q9SYC9	571	Vesicle-associated protei	no	no	0.801	0.274	0.335	2e-14
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.775	0.369	0.333	2e-13
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.806	0.403	0.321	5e-10
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.622	0.064	0.273	1e-06
Q9FL92	1372	Probable WRKY transcripti	no	no	0.413	0.059	0.359	4e-06
Q9FH83	1288	Probable WRKY transcripti	no	no	0.438	0.066	0.329	0.0002

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 95/144 (65%), Gaps = 2/144 (1%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
           YDVFLSFRGEDTR  FT HL+  L   G   F+DD+ LE G  I  EL +AIEES  +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
           + S+NYA+S WCL+EL KI+EC  + K + V  +FY VDP+  R QK E F + F ++E 
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFK-QTVIPIFYDVDPSHVRNQK-ESFAKAFEEHET 129

Query: 140 EFKENQEKVLKWRAAFTRVASLAG 163
           ++K++ E + +WR A    A+L G
Sbjct: 130 KYKDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 5/150 (3%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           +YDVF SFRGED RNNF  HL       G + F+DD  ++R + I  EL  AI ES +S+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDH-IKRSHTIGHELRAAIRESKISV 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
           V+ S+NYASS WCLDEL +I++C  + +  KV  VFY VDP+D R Q G+ F   F   E
Sbjct: 69  VLFSENYASSSWCLDELIEIMKC-KEEQGLKVMPVFYKVDPSDIRKQTGK-FGMSF--LE 124

Query: 139 EEFKENQEKVLKWRAAFTRVASLAGWHLQD 168
               + +E+   WR A T  A++ G H Q+
Sbjct: 125 TCCGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  114 bits (284), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 6/149 (4%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           +YDVF SFRGED R++F  HL   L R   I F DDE +ER   I  EL  AI+ES ++I
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDE-IERSRSIGPELLSAIKESRIAI 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
           VI SKNYASS WCL+EL +I +C     ++ V  +F+ VD ++ + Q GE F +VF +  
Sbjct: 69  VIFSKNYASSTWCLNELVEIHKCYTNL-NQMVIPIFFHVDASEVKKQTGE-FGKVFEETC 126

Query: 139 EEFKENQEKVLKWRAAFTRVASLAGWHLQ 167
           +   E++++   W+ A   VA +AG+ L+
Sbjct: 127 KAKSEDEKQ--SWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 2   AASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKD-DETLERG 60
           A+S    + T  Q       VF++FRG+D RN F   L  A+       F D DE +  G
Sbjct: 3   ASSSVRPTPTGPQ-------VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--G 53

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            ++ + L   I+ES V++VI SK+Y SS WCLDELA+I +C N+        +FY + P+
Sbjct: 54  TDLVN-LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQ-GGLNAIPIFYKLAPS 111

Query: 121 DARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGD 171
                KG  F   F   +E++K + E+  KW+ A   +  L G  L +  D
Sbjct: 112 SVLELKG-GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEKSD 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 4   SHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEI 63
           S+ +SS+  H +   +Y VF++FRG++ RN+F   L  A+       F D+  L RG  +
Sbjct: 342 SNAASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNL 400

Query: 64  SSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADAR 123
           +  L + IEES V++ I S+ Y  S WCLDEL K+ E   + K   V  VFY ++    +
Sbjct: 401 NY-LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGK-LVVVPVFYRLNATACK 458

Query: 124 TQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGW 164
              G  F       E E++   E++ KW+ A + V S  G 
Sbjct: 459 RFMGA-FGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGL 498

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 15  LLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEES 74
           L+ +   VF++FRG+D R  F   L  AL +     F D++  ERG  + S L   I ES
Sbjct: 17  LIPTGPQVFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLIS-LFDTIGES 74

Query: 75  NVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVD---PADARTQKGEDFE 131
            +++VI S+ Y  S WC+DEL KI E  ++ +   +  +FY +D     D   + G++F 
Sbjct: 75  KIALVIFSEGYCESHWCMDELVKIKEYMDQNR-LIIIPIFYRLDLDVVKDLTGKFGDNFW 133

Query: 132 RVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVS 173
            +  KY+ E K    K+ KW  A   V  L    L    D+S
Sbjct: 134 DLVDKYQPEPK----KLHKWTEALFSVCELFSLILPKHSDIS 171

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 7   SSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSE 66
           +SSS+  +   +   VF+ FRG D R +F   L  AL R   I    DE    G+E+++ 
Sbjct: 2   ASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPAL-REANINVFIDENEFLGSEMANL 60

Query: 67  LSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRK---VFAVFYGVDPADAR 123
           L++ IEES +++VI S ++  S  CL+ELAKI E    RKD+    V  +FY V P+  +
Sbjct: 61  LTR-IEESELALVIFSVDFTRSHRCLNELAKIKE----RKDQGRLIVIPIFYKVKPSAVK 115

Query: 124 TQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGD 171
             +G+ F   F   E   +       KW+ A   +    G  L +  +
Sbjct: 116 FLEGK-FGDNFRALERNNRHMLPITQKWKEALESIPGSIGMPLAEQSE 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 28/150 (18%)

Query: 20  YDVFLSFRGEDTRN-NFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           YDV + +   D  N +F  HL A+L R G   +      E+ NE+      A+ +  V I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY------EKFNEV-----DALPKCRVLI 716

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
           ++L+  Y  S      L  I+E     +DR V+ +FY + P D      +++ER + + E
Sbjct: 717 IVLTSTYVPS-----NLLNILE-HQHTEDRVVYPIFYRLSPYDFVCNS-KNYERFYLQDE 769

Query: 139 EEFKENQEKVLKWRAAFTRVASLAGWHLQD 168
            +         KW+AA   +  + G+ L D
Sbjct: 770 PK---------KWQAALKEITQMPGYTLTD 790

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 29  EDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASS 88
           E+ R +F  HL  AL R G     +D  ++  + +S+E    +E + VS++IL  N   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGV----NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 89  PWCLDELAKIVECGNKRKDRKVFAVFYGV 117
              LD+L K+++C  K KD+ V  V YGV
Sbjct: 70  ---LDKLVKVLDC-QKNKDQVVVPVLYGV 94

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 29  EDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASS 88
           E+ R +F  HL  AL R G         ++  + +  E    IE++ VS+++L  N   S
Sbjct: 17  EEVRYSFVSHLSEALRRKG--INNVVVDVDIDDLLFKESQAKIEKAGVSVMVLPGNCDPS 74

Query: 89  PWCLDELAKIVECGNKRKDRKVFAVFYG 116
              LD+ AK++EC    KD+ V +V YG
Sbjct: 75  EVWLDKFAKVLECQRNNKDQAVVSVLYG 102

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.826	0.134	0.541	1e-44
105922482	1121	TIR-NBS-LRR type disease resistance prot	0.816	0.142	0.547	2e-44
224130518	1121	tir-nbs-lrr resistance protein [Populus	0.816	0.142	0.547	2e-44
357462269	1743	TIR-NBS-LRR-TIR type disease resistance	0.755	0.084	0.58	1e-41
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.744	0.117	0.577	2e-41
359493273	1233	PREDICTED: TMV resistance protein N-like	0.744	0.118	0.577	3e-41
147845097	826	hypothetical protein VITISV_009816 [Viti	0.790	0.187	0.544	3e-41
359493556	1148	PREDICTED: TMV resistance protein N-like	0.826	0.141	0.526	5e-41
342365839	1061	TIR-NBS-LRR type disease resistance prot	0.729	0.134	0.6	6e-41
255555357	1094	leucine-rich repeat-containing protein,	0.744	0.133	0.590	8e-41

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 8/170 (4%)

Query: 1   MAASHTSSSSTHHQLLQSK------YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDD 54
           MAA+ +  ++T      ++      Y VFLSFRGEDTR NFT HL++ L R   + FKDD
Sbjct: 1   MAATSSRCNTTSPPFSPTQNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDD 60

Query: 55  ETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVF 114
           E LE+G  I+ EL +AIE+S  S+++LSKNYASS WCLDELAKI+ECG++ K +K+F VF
Sbjct: 61  EKLEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDELAKIIECGDQ-KGQKIFPVF 119

Query: 115 YGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGW 164
           Y V+P+D R Q G  F+  FAK+EE+++EN +KV KWRAA T+VA+L+GW
Sbjct: 120 YDVEPSDVRKQTG-SFQDDFAKHEEKYRENIDKVRKWRAAMTQVANLSGW 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 1   MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTDHL+ AL   G I F+DD+ LERG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL QAI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQD 168
           + R Q G   ++ FA +EE FK+N EKV  WR A   VA+L+GW LQD
Sbjct: 114 EVRNQTGR-LQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQD 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 1   MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTDHL+ AL   G I F+DD+ LERG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL QAI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQD 168
           + R Q G   ++ FA +EE FK+N EKV  WR A   VA+L+GW LQD
Sbjct: 114 EVRNQTGR-LQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQD 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462269|ref|XP_003601416.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] gi|355490464|gb|AES71667.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula]

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           KY VFLSFRGEDTR  FTDHL+AAL+R   I F+DDE L RG  IS +L  AIEES  ++
Sbjct: 11  KYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLLAIEESLSAV 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
           +I+SKNYA+S WCLDEL KI+E   +   ++VF VFYGVDP+D R Q+G  F   F K+E
Sbjct: 71  LIISKNYANSAWCLDELVKILE-SKRLLGQQVFPVFYGVDPSDVRNQRGS-FAEAFKKHE 128

Query: 139 EEFKENQEKVLKWRAAFTRVASLAGWHLQD 168
           E+F E++EKV KWR A   VA+L+GW  +D
Sbjct: 129 EKFSESKEKVQKWRDALREVANLSGWDSKD 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 106/149 (71%), Gaps = 3/149 (2%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
           YDVFLSFRGEDTR +FTDHL+AAL+  G   F+DDE LERG EI+ EL +AIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP   R Q G  F   FA + E
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTG-SFMEAFASHGE 134

Query: 140 EFKENQEKVLKWRAAFTRVASLAGWHLQD 168
           +  E  E+  +WRAA T+ A+L+GWHLQ+
Sbjct: 135 D-TEVIERAKRWRAALTQAANLSGWHLQN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 106/149 (71%), Gaps = 3/149 (2%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
           YDVFLSFRGEDTR +FTDHL+AAL+  G   F+DDE LERG EI+ EL +AIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP   R Q G  F   FA + E
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTG-SFMEAFASHGE 134

Query: 140 EFKENQEKVLKWRAAFTRVASLAGWHLQD 168
           +  E  E+  +WRAA T+ A+L+GWHLQ+
Sbjct: 135 D-TEVIERAKRWRAALTQAANLSGWHLQN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845097|emb|CAN78476.1| hypothetical protein VITISV_009816 [Vitis vinifera]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 113/167 (67%), Gaps = 12/167 (7%)

Query: 1   MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERG 60
           MA+S TSS          ++DVFLSFRGEDTR NFTDHL++AL   G   F+DDE LERG
Sbjct: 1   MASSGTSS-------FXXRWDVFLSFRGEDTRXNFTDHLYSALTSRGIHTFRDDEGLERG 53

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L +AIEES VSIV+ SKNYA S WCLDEL KI+E   + K + V  VFY VDP+
Sbjct: 54  GEIQPSLLKAIEESKVSIVVFSKNYAHSQWCLDELYKIME-SRREKGQIVVPVFYHVDPS 112

Query: 121 DARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ 167
           D R Q G  F + FA+Y+   K  +E+VL+WRAA T+   L+GWH++
Sbjct: 113 DVRKQTG-SFGKAFARYK---KVTKERVLRWRAALTQAGGLSGWHVE 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493556|ref|XP_003634626.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 121/167 (72%), Gaps = 5/167 (2%)

Query: 1   MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERG 60
           MA+     SS+   +L+  +DVFLSFRGEDTR  FTDHL+AAL+  G   F+DD+ L+RG
Sbjct: 1   MASMCNLISSSSTSVLRWNHDVFLSFRGEDTRYKFTDHLYAALVNKGIRTFRDDK-LKRG 59

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFA-VFYGVDP 119
            EI+  L + IEES +SIV+ S+NYASS WCLDEL KI+EC  ++K R++   +FY VDP
Sbjct: 60  EEIAPLLLKVIEESRLSIVVFSENYASSRWCLDELVKIMEC--RQKIRQILVPIFYHVDP 117

Query: 120 ADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHL 166
           +D RTQKG  FE+ FA +E   ++++EK+ +WRAA T  ++L+GWHL
Sbjct: 118 SDLRTQKGS-FEKSFASHERHGRDSKEKIQRWRAALTEASNLSGWHL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342365839|gb|AEL30372.1| TIR-NBS-LRR type disease resistance protein [Arachis hypogaea]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 101/145 (69%), Gaps = 2/145 (1%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
           Y VFLSFRG+DTR   TDHL+A+L RNG  AF+DD  LERG  IS EL +AIEES  ++V
Sbjct: 21  YHVFLSFRGQDTRKGVTDHLYASLQRNGITAFRDDMNLERGEVISHELLRAIEESMFAVV 80

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
           +LS NYASS WCLDEL KIVEC N     ++  VFYGVDP D R QKG  FE  F K EE
Sbjct: 81  VLSPNYASSAWCLDELQKIVECKNNL-GLQIVPVFYGVDPCDVRHQKGT-FEDAFRKQEE 138

Query: 140 EFKENQEKVLKWRAAFTRVASLAGW 164
            F  + EKV +WR A  +VAS +GW
Sbjct: 139 RFGGDSEKVKRWREALIQVASYSGW 163

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 106/149 (71%), Gaps = 3/149 (2%)

Query: 17  QSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNV 76
           Q KYDVFLSFRGEDTR NFT HLHAAL       F DD+ LERGNEIS  L +AIEES +
Sbjct: 20  QEKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDD-LERGNEISPSLLKAIEESKI 78

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAK 136
           S+VI+S++Y SS WCL+EL KI+EC  K + + V  VFY VDP+  R Q G  FE VFA+
Sbjct: 79  SVVIISQDYPSSKWCLEELVKILECM-KNRGQMVIPVFYRVDPSHVRNQTG-SFEDVFAR 136

Query: 137 YEEEFKENQEKVLKWRAAFTRVASLAGWH 165
           +EE    ++EKV  WRAA   VA+L+GWH
Sbjct: 137 HEESLSVSKEKVQSWRAALKEVANLSGWH 165

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	196
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.724	0.516	0.524	2.5e-33
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.724	0.382	0.517	5.2e-33
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.709	0.119	0.537	5.5e-33
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.724	0.124	0.493	1.3e-31
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.760	0.107	0.470	3.8e-31
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.744	0.385	0.483	6.9e-31
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.719	0.371	0.489	3e-30
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.719	0.801	0.482	7.9e-30
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.770	0.397	0.458	1e-29
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.785	0.129	0.439	2.5e-29

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 76/145 (52%), Positives = 96/145 (66%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRG DTR NF   L+  L+R     FKDD+ LE G  IS EL +AIEES  ++
Sbjct:     8 KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP   R Q G+  E+ F K+E
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQ-FKKHE 125

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG 163
                +E+ EKV  WR A T +AS++G
Sbjct:   126 AR-EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 75/145 (51%), Positives = 95/145 (65%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRG DTR NF   L+   +R     FKDD+ LE G  IS EL +AIEES  ++
Sbjct:     8 KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP   R Q G+  E+ F K+E
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQ-FKKHE 125

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG 163
                +E+ EKV  WR A T +AS++G
Sbjct:   126 AR-EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 5.5e-33, P = 5.5e-33
 Identities = 78/145 (53%), Positives = 97/145 (66%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRGEDTR N   HLH  L+  G + FKDD+ LE G+ IS E+S+AI+ S  ++
Sbjct:    11 KYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYAL 70

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             VILS+NYASS WCLDEL  +++   K K  KV  +FYGVDP+  R Q G  F   F KY+
Sbjct:    71 VILSENYASSSWCLDELRMVMDLHLKNKI-KVVPIFYGVDPSHVRHQTGS-F--TFDKYQ 126

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG 163
             +    N  KV  WR A T++ASLAG
Sbjct:   127 DSKMPN--KVTTWREALTQIASLAG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 359 (131.4 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 71/144 (49%), Positives = 95/144 (65%)

Query:    20 YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
             YDVFLSFRGEDTR  FT HL+  L   G   F+DD+ LE G  I  EL +AIEES  +IV
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    80 ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
             + S+NYA+S WCL+EL KI+EC  + K + V  +FY VDP+  R QK E F + F ++E 
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFK-QTVIPIFYDVDPSHVRNQK-ESFAKAFEEHET 129

Query:   140 EFKENQEKVLKWRAAFTRVASLAG 163
             ++K++ E + +WR A    A+L G
Sbjct:   130 KYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 73/155 (47%), Positives = 105/155 (67%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRG DTR+NF DHL+ AL ++    F+D+E +ERG+EISS L   +E+S  S+
Sbjct:    13 KYDVFLSFRGADTRDNFGDHLYKAL-KDKVRVFRDNEGMERGDEISSSLKAGMEDSAASV 71

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRK-DRKVFAVFYGVDPADARTQKGEDFERVFAKY 137
             +++S+NY+ S WCLDELA +  C  K   DR++  +FY VDP+  R Q  +  ++ F ++
Sbjct:    72 IVISRNYSGSRWCLDELAML--CKMKSSLDRRILPIFYHVDPSHVRKQS-DHIKKDFEEH 128

Query:   138 EEEFKENQEKVLKWRAAFTRVASLAGWHL-QDSGD 171
             +  F E +EKV +WR A T V +LAG+   +DS D
Sbjct:   129 QVRFSEEKEKVQEWREALTLVGNLAGYVCDKDSKD 163

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/153 (48%), Positives = 98/153 (64%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             K+DVFLSFRG DTR +F   L+  LIR     FKDD+ L+ G  I+ EL +AIE S  ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             V++S NYA+S WCL+EL KI++  N     KV  +FYGVDP   R Q GE  E+ F K+E
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGS-LKVMPIFYGVDPCHVRRQIGEVAEQ-FKKHE 127

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG---WHLQD 168
                +E+ EKVL WR A T +AS++G   W  +D
Sbjct:   128 G--REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 71/145 (48%), Positives = 91/145 (62%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRG DTR NF   L+  L+R     FKDD+ LE G  ISSEL + IE S  ++
Sbjct:     8 KYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAV 67

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             V++S+ YA+S WCLDEL  I++   K+    V  +FYGV+P   R Q G   E+ F K+ 
Sbjct:    68 VVVSETYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKHG 125

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG 163
                +E+ EKVLKWR A T  A L+G
Sbjct:   126 S--REDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 70/145 (48%), Positives = 90/145 (62%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ LE G   S EL   IE S  ++
Sbjct:     8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P   R Q G   E+ F K+ 
Sbjct:    68 VVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKHA 125

Query:   139 EEFKENQEKVLKWRAAFTRVASLAG 163
                +E+ EKVLKWR A T  A L+G
Sbjct:   126 S--REDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 71/155 (45%), Positives = 96/155 (61%)

Query:    19 KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
             K+DVFLSFRG+DTR  F   L+  LI  G   FKDD  L+ G  I+S+L  AIE S +++
Sbjct:    14 KFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAV 73

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
             VI+SKNY++SPWCL EL  I++   K+    V  +FY V+PA  R Q  E   + F K+E
Sbjct:    74 VIISKNYSASPWCLQELVMIMDV-EKKGSIIVMPIFYNVEPAHVRRQI-EQVAKQFRKHE 131

Query:   139 EEFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVS 173
                +EN E V+ WR A T +AS++G   +D  D S
Sbjct:   132 G--RENYETVVSWRQALTNLASISGHCSRDCEDDS 164

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 2.5e-29, P = 2.5e-29
 Identities = 69/157 (43%), Positives = 96/157 (61%)

Query:    20 YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIV 79
             YDVF+SFRG D R NF  HL+ +L R G   F DD  L+RG  IS EL  AIE S + IV
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    80 ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEE 139
             +L+K+YASS WCLDEL  I++         VF +F  VDP+D R Q+G  + + F+K++ 
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGS-YAKSFSKHKN 135

Query:   140 EFKENQEKVLKWRAAFTRVASLAGWHLQDSGDVSPFA 176
                 N  K+  WR A T+VA+++GW +++  +    A
Sbjct:   136 SHPLN--KLKDWREALTKVANISGWDIKNRNEAECIA 170

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	196
pfam01582	135	pfam01582, TIR, TIR domain	1e-37
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-37
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-33
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-11
pfam13676	102	pfam13676, TIR_2, TIR domain	2e-10
pfam08937	122	pfam08937, DUF1863, MTH538 TIR-like domain (DUF186	2e-04

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  126 bits (319), Expect = 1e-37
 Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 22  VFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVIL 81
           VF+SF G+D R+ F  HL   L   G     DD     G  I   L +AIE+S  +IVI 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 82  SKNYASSPWCLDELAKIVECGNK-RKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEE 140
           S NYASS WCLDEL +IV+C  +    + +  +FY VDP+D R Q G+ F + F K  + 
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGK-FGKAFLKTLKW 119

Query: 141 FKENQEKVLKWRAA 154
             + ++K+  W+ A
Sbjct: 120 SGDKEDKIRFWKKA 133

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  137 bits (346), Expect = 1e-37
 Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 2   AASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGN 61
            AS +SSS          YDVF SF GED R  F  H    L R   IAFKD+E +ER  
Sbjct: 1   MASSSSSSRNW------VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQ 53

Query: 62  EISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
            +  EL QAI +S +++V+ SKNYASS WCL+EL +IV C  +   + V  VFYG+DP+ 
Sbjct: 54  SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRC-KEELGQLVIPVFYGLDPSH 112

Query: 122 ARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ 167
            R Q G DF   F K  +   E+++   +W+ A T VA++ G+H Q
Sbjct: 113 VRKQTG-DFGEAFEKTCQNKTEDEKI--QWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  115 bits (291), Expect = 2e-33
 Identities = 57/137 (41%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 19  KYDVFLSFRG-EDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVS 77
           +YDVF+S+ G ED RN F  HL   L   G   F DD     G     E+ +AIE+S ++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKY 137
           IV+LS NYA S WCLDEL   +E   +    +V  +FY V P+D R Q G+ F +VF K 
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGK-FRKVFKKN 117

Query: 138 EEEFKENQEKVLKWRAA 154
             ++ E  EK   W+ A
Sbjct: 118 YLKWPE-DEKEQFWKKA 133

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 21  DVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVI 80
           DVF++ RG DT+      L+  L R     F D++ ++ G+++  +++ AI    V + +
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 81  LSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADAR 123
            S  Y  S +CL ELA I+E       ++V  +F  V P+  R
Sbjct: 88  FSPRYCESYFCLHELALIME-----SKKRVIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 22  VFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVIL 81
           VF+S+   D    + + L  AL   G   + D + +  G +   E+ +A+  ++V +V+L
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWD-IPPGEDWRDEIEEALRSADVVLVLL 57

Query: 82  SKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
           S  Y +SPWC  E           + +++  V   ++  +
Sbjct: 58  SPAYLASPWCRAEWGAA-----LERGKRLIPVR--LEDCE 90

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|220076 pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 20 YDVFLSFRGED---TRNNFTDHLHAALIRN------GFIAFKDDETLERGNE--ISSELS 68
            VF+SF  ED     +   +      I        GF    D E ++R N+  I   + 
Sbjct: 1  RKVFISFHHEDDVWRYDQLRNLGANEGINGAENIDFGFFDVNDWEPIKRPNDAYIKRWIR 60

Query: 69 QAIEESNVSIVILSKNYASSPW 90
            I+ S+V+IV++ +  AS  W
Sbjct: 61 DQIKGSSVTIVLVGEETASRKW 82

This domain adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein. This domain is similar to the TIR domain. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	196
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.93
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.92
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.74
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.14
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.6
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.66
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.68
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	92.52
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	90.73
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	86.62
COG4271	233	Predicted nucleotide-binding protein containing TI	85.91
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	80.32

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=3.4e-45  Score=296.55  Aligned_cols=132  Identities=27%  Similarity=0.502  Sum_probs=123.4

Q ss_pred             ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHH
Q 043461           18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAK   97 (196)
Q Consensus        18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~   97 (196)
                      .+|||||||||+|+|++|++||+.+|+++||+||+|+.++.+|+.+.+.|.+||++|+++|+|||++|++|.||++||++
T Consensus        25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~  104 (187)
T PLN03194         25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELAL  104 (187)
T ss_pred             CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCeEEEEEeecCCcccccc-CcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeecC
Q 043461           98 IVECGNKRKDRKVFAVFYGVDPADARTQ-KGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQD  168 (196)
Q Consensus        98 i~~~~~~~~~~~ViPVfy~v~psdVr~q-~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~  168 (196)
                      |++|.     ..||||||+|+|+|||+| .| .             .+.+++++||.||++|++++|++++.
T Consensus       105 I~e~~-----~~ViPIFY~VdPsdVr~q~~~-~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194        105 IMESK-----KRVIPIFCDVKPSQLRVVDNG-T-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHcC-----CEEEEEEecCCHHHhhccccC-C-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            99864     369999999999999997 45 3             13589999999999999999998865

>PLN03210 Resistant to P

Probab=100.00  E-value=2e-44  Score=358.71  Aligned_cols=149  Identities=44%  Similarity=0.774  Sum_probs=141.9

Q ss_pred             CceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHH
Q 043461           17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELA   96 (196)
Q Consensus        17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~   96 (196)
                      .++|||||||||+|+|++|++||+.+|.++||++|+|+ ++++|+.+.+++.+||++|+++|||||++|++|.|||+||+
T Consensus        10 ~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~   88 (1153)
T PLN03210         10 NWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL   88 (1153)
T ss_pred             CCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence            47899999999999999999999999999999999987 59999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeecCCC
Q 043461           97 KIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSG  170 (196)
Q Consensus        97 ~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~  170 (196)
                      +|++|+++ ++++|+||||+|+|+|||+|+| .||++|.+++++.  +++++++||+||++||+++||++.+..
T Consensus        89 ~i~~~~~~-~~~~v~pvfy~v~p~~v~~~~g-~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         89 EIVRCKEE-LGQLVIPVFYGLDPSHVRKQTG-DFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             HHHHhhhh-cCceEEEEEecccHHHHhhccc-hHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            99999998 9999999999999999999999 9999999988753  478999999999999999999997654

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.93  E-value=1.3e-27  Score=185.86  Aligned_cols=134  Identities=34%  Similarity=0.562  Sum_probs=117.2

Q ss_pred             EEEccccccCcccHHHHHHHHHHcC--CceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHHH
Q 043461           22 VFLSFRGEDTRNNFTDHLHAALIRN--GFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIV   99 (196)
Q Consensus        22 VFISy~~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i~   99 (196)
                      |||||++.+.+..|+.+|..+|+++  |+++|++++++.+|..+.+++.++|++|+++|+|+|++|+.|+||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999444678999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCC-CCeEEEEEeecCCcccc-ccCcchHHHHHHHHHHHhccC--HHHHHHHHHHHH
Q 043461          100 ECGNKRK-DRKVFAVFYGVDPADAR-TQKGEDFERVFAKYEEEFKEN--QEKVLKWRAAFT  156 (196)
Q Consensus       100 ~~~~~~~-~~~ViPVfy~v~psdVr-~q~g~~f~~~f~~~~~~~~~~--~~~v~~W~~AL~  156 (196)
                      ++..+.+ ..+|+||||++.+++++ ++.+ .|+..|..+......+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSL-RFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHH-HHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhH-HHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9987622 58999999999999999 7889 9999988776655433  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.92  E-value=7.5e-25  Score=168.28  Aligned_cols=138  Identities=41%  Similarity=0.709  Sum_probs=115.6

Q ss_pred             eeeEEEcccc-ccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHH
Q 043461           19 KYDVFLSFRG-EDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAK   97 (196)
Q Consensus        19 ~yDVFISy~~-~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~   97 (196)
                      +|||||||++ ++..+.|+.+|...|...|+.+|.|+... .|.... +|.++|++|+++|+|+||+|..|+||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~-~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP-GGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc-ccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999999 45567899999999999999999997533 333333 99999999999999999999999999999999


Q ss_pred             HHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhc
Q 043461           98 IVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVAS  160 (196)
Q Consensus        98 i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~  160 (196)
                      ++++....+...||||+++..|+++..+.+ .++..+..+..++..+..+ +.|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~-~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPG-KFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhccc-HHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            998775435689999999998999999999 9999998875555433333 789999988754

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.74  E-value=1.5e-18  Score=127.09  Aligned_cols=87  Identities=34%  Similarity=0.615  Sum_probs=75.3

Q ss_pred             EEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHHHHh
Q 043461           22 VFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (196)
Q Consensus        22 VFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i~~~  101 (196)
                      |||||+++|.  .++..|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+..|+++|++|..|+||..|+..+.+ 
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            8999999993  599999999999999999997 899999999999999999999999999999999999999999954 


Q ss_pred             cccCCCCeEEEEEee
Q 043461          102 GNKRKDRKVFAVFYG  116 (196)
Q Consensus       102 ~~~~~~~~ViPVfy~  116 (196)
                          .+..||||.++
T Consensus        77 ----~~~~iipv~~~   87 (102)
T PF13676_consen   77 ----RGKPIIPVRLD   87 (102)
T ss_dssp             ----TSESEEEEECS
T ss_pred             ----CCCEEEEEEEC
Confidence                44579999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.14  E-value=9.7e-11  Score=106.90  Aligned_cols=95  Identities=25%  Similarity=0.424  Sum_probs=81.0

Q ss_pred             CCCceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccC-------
Q 043461           15 LLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYAS-------   87 (196)
Q Consensus        15 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~-------   87 (196)
                      +.+++.|||||||..- .+.+++-|...|+-+|++||+|-+.+..|.. .+.+.+.|...+.+|.|++|+...       
T Consensus       608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            4578899999998774 5789999999999999999999888998875 558999999999999999999763       


Q ss_pred             -ChhHHHHHHHHHHhcccCCCCeEEEEEee
Q 043461           88 -SPWCLDELAKIVECGNKRKDRKVFAVFYG  116 (196)
Q Consensus        88 -S~wCl~EL~~i~~~~~~~~~~~ViPVfy~  116 (196)
                       -.|...||..+.+|.+.     |||||-.
T Consensus       686 CeDWVHKEl~~Afe~~KN-----IiPI~D~  710 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEHQKN-----IIPIFDT  710 (832)
T ss_pred             HHHHHHHHHHHHHHhcCC-----eeeeecc
Confidence             46777788888887765     9999953

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.60  E-value=1.1e-07  Score=73.15  Aligned_cols=91  Identities=24%  Similarity=0.429  Sum_probs=48.4

Q ss_pred             eeEEEccccccCcccHHHHHHHHHHcC-------Ccee----------EecCccCcCCCcccHHHHHHhhhcceEEEEee
Q 043461           20 YDVFLSFRGEDTRNNFTDHLHAALIRN-------GFIA----------FKDDETLERGNEISSELSQAIEESNVSIVILS   82 (196)
Q Consensus        20 yDVFISy~~~D~~~~fv~~L~~~L~~~-------Gi~v----------f~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S   82 (196)
                      |.|||||++.|.. ..+..|...+...       .+..          +.+..+....+.|...|.++|++|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999853 3667777777663       2211          11222222344678899999999999999999


Q ss_pred             ccccCChhHHHHHHHHHHhcccCCCCeEEEEEee
Q 043461           83 KNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG  116 (196)
Q Consensus        83 ~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPVfy~  116 (196)
                      ++...|+|+..|+..+++     .+..||-|...
T Consensus        80 ~~T~~s~wV~~EI~~A~~-----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK-----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT-----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH-----CCCCEEEEECC
Confidence            999999999999999988     34558887643

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.66  E-value=7.3e-05  Score=58.16  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             eEEEccccccCc-ccHHHHHHHHHHcC-CceeEecCccCcC--CCcccHHHHHHhhhcceEEEEeeccc
Q 043461           21 DVFLSFRGEDTR-NNFTDHLHAALIRN-GFIAFKDDETLER--GNEISSELSQAIEESNVSIVILSKNY   85 (196)
Q Consensus        21 DVFISy~~~D~~-~~fv~~L~~~L~~~-Gi~vf~d~~~l~~--G~~i~~~i~~aI~~S~i~IvV~S~~y   85 (196)
                      .|||||+..... ...|..|...|++. |+.|.+|..+...  +.....=+.++|++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999986543 36789999999999 9999999876633  55666667788999999999999554

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.68  E-value=0.0054  Score=47.28  Aligned_cols=88  Identities=18%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             eEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecccc-------------C
Q 043461           21 DVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYA-------------S   87 (196)
Q Consensus        21 DVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~-------------~   87 (196)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+-.+....|..+.+.+.+.+.+++.+|++++|+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899997 553  57888999998889877776556789999999999999999999999998522             2


Q ss_pred             ChhHHHHHHHHHHhcccCCCCeEEEEE
Q 043461           88 SPWCLDELAKIVECGNKRKDRKVFAVF  114 (196)
Q Consensus        88 S~wCl~EL~~i~~~~~~~~~~~ViPVf  114 (196)
                      ....+.|+..++...   +..+++-+.
T Consensus        78 R~NVifE~G~f~g~L---Gr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL---GRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhhc---CcceEEEEE
Confidence            345677888887754   334455443

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=92.52  E-value=0.43  Score=33.62  Aligned_cols=67  Identities=22%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             eEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCC
Q 043461           21 DVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASS   88 (196)
Q Consensus        21 DVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S   88 (196)
                      .||||-.-.|.. .--..|.+.+.+.|.....-+.--..+....+.+++.|++|++.|.++-.+|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998877753 3346777788777765443221112345556788999999999999999999764

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=90.73  E-value=0.41  Score=41.44  Aligned_cols=101  Identities=18%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             CCCceeeEEEccccccCcccHHHHHHHHHHc--CCceeEecCcc---CcCCCcccHHHHHHh--hhcceEEEEeeccccC
Q 043461           15 LLQSKYDVFLSFRGEDTRNNFTDHLHAALIR--NGFIAFKDDET---LERGNEISSELSQAI--EESNVSIVILSKNYAS   87 (196)
Q Consensus        15 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~~---l~~G~~i~~~i~~aI--~~S~i~IvV~S~~y~~   87 (196)
                      ...+.||+=|||.|+-  .++++....+++.  .-+..|.|..-   +-+|+- . .++.-+  ..|+..+|....+|..
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL-~-~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSL-V-STLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCccH-H-HhcccccCceEEEEEEEeCCceEE
Confidence            3467899999999985  3699999999983  35778888431   333332 1 222222  2588899999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCCCeEEEEEe-ecCCccc
Q 043461           88 SPWCLDELAKIVECGNKRKDRKVFAVFY-GVDPADA  122 (196)
Q Consensus        88 S~wCl~EL~~i~~~~~~~~~~~ViPVfy-~v~psdV  122 (196)
                      -.||.-|-..+-+..   .-....||.| +++-+.+
T Consensus       249 K~~c~~E~~~~r~~~---~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         249 KSTCHIEGLEGRLNP---ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeeeccchhhccccc---cccccceEEEEecCCccc
Confidence            999999877764432   2245777776 4555544

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=86.62  E-value=7  Score=28.65  Aligned_cols=68  Identities=21%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHHcCCceeEecCcc-Cc---CC----CcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHHHHh
Q 043461           33 NNFTDHLHAALIRNGFIAFKDDET-LE---RG----NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (196)
Q Consensus        33 ~~fv~~L~~~L~~~Gi~vf~d~~~-l~---~G----~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i~~~  101 (196)
                      ..+...+.+.|+..|+.+|...+. ..   .+    ..+...-.++|++|++.|+++...- .+.-+.-|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            568899999999999999876521 11   12    2344455678999999999998755 566788899999773

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=85.91  E-value=5.8  Score=33.19  Aligned_cols=96  Identities=19%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             eEEEccccccCcccHHHHHHHHHHcC-C-ceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecccc------------
Q 043461           21 DVFLSFRGEDTRNNFTDHLHAALIRN-G-FIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYA------------   86 (196)
Q Consensus        21 DVFISy~~~D~~~~fv~~L~~~L~~~-G-i~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~------------   86 (196)
                      .|||-|+++.    .+.....+|.+. . ..+|.|. -...|+.+.+.+.+-|.+++.+|++.+|+=.            
T Consensus        84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccHH----HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            8999986543    666666666643 3 4566665 3788999999999999999999999999854            


Q ss_pred             --CChhHHHHHHHHHHhcccCCCCeEEEEEee----cCCccccc
Q 043461           87 --SSPWCLDELAKIVECGNKRKDRKVFAVFYG----VDPADART  124 (196)
Q Consensus        87 --~S~wCl~EL~~i~~~~~~~~~~~ViPVfy~----v~psdVr~  124 (196)
                        .......||..++...   ++.+|+-+.-+    --|||+..
T Consensus       159 praRqNVifELGm~mgrL---gRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         159 PRARQNVIFELGMFMGRL---GRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             ccccccchhhHhhHHhhc---ccceEEEEecccccccCccccCc
Confidence              1233677888888765   34445443321    13777654

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=80.32  E-value=6.5  Score=26.96  Aligned_cols=60  Identities=10%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             eeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecc
Q 043461           20 YDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKN   84 (196)
Q Consensus        20 yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~   84 (196)
                      +||+|...+++. ...+-.+...|++.|+++-+|..    +..+...+..|-+.---.++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~----~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR----NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            677776655443 35678899999999999999864    3455555555543322334444443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	196
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		9e-31
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		1e-28

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 90/145 (62%), Gaps = 4/145 (2%)
Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ LE G   S EL   IE S  ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
           V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P   R Q G   E+ F K+ 
Sbjct: 68  VVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKHA 125
Query: 139 EEFKENQEKVLKWRAAFTRVASLAG 163
              +E+ EKVLKWR A T  A L+G
Sbjct: 126 S--REDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G EI   L +AI++S + +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYE 138
            I+S  YA S WCL ELA+IV    +   R +  +FY VDP+D R Q G  +++ F K+ 
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGC-YKKAFRKHA 153
Query: 139 EEFKENQEKVLKWRAAFTRVASLAGWHL 166
            +F  + + +  W+ A  +V  L GWH+
Sbjct: 154 NKF--DGQTIQNWKDALKKVGDLKGWHI 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	196
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-83
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-81
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	2e-64
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	9e-15
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	8e-09
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	3e-08
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	3e-05

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  244 bits (625), Expect = 2e-83
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 1   MAASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERG 60
           ++ S   S S        +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G
Sbjct: 21  ISDSTNPSGSFP----SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKG 76

Query: 61  NEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L +AI++S + + I+S  YA S WCL ELA+IV    +   R +  +FY VDP+
Sbjct: 77  KEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

Query: 121 DARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDSGD 171
           D R Q G  +++ F K+  +F    + +  W+ A  +V  L GWH+  +  
Sbjct: 137 DVRHQTG-CYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDK 184

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  238 bits (609), Expect = 3e-81
 Identities = 72/161 (44%), Positives = 92/161 (57%), Gaps = 8/161 (4%)

Query: 9   SSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELS 68
           SS       +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ LE G   S EL 
Sbjct: 2   SSHT----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELK 57

Query: 69  QAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGE 128
             IE S  ++V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P   R Q G 
Sbjct: 58  SPIEVSRFAVVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTG- 115

Query: 129 DFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQDS 169
                F K+    +E+ EKVLKWR A T  A L+G    D 
Sbjct: 116 VLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGDD 154

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  194 bits (496), Expect = 2e-64
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 3   ASHTSSSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNE 62
                 ++         +D+F+S   ED + +F + L   L   G   + DD +L  G+ 
Sbjct: 4   KPTAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDS 62

Query: 63  ISSELSQAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADA 122
           +   + + +  S   IV+LS ++    W   EL  + +        ++  +++ V   + 
Sbjct: 63  LRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQL-ESSGRSRILPIWHKVSKDEV 121

Query: 123 RTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTR 157
            +          A        + ++++    A  R
Sbjct: 122 ASFSP-TMADKLAFNTSTK--SVDEIVADLMAIIR 153

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAAL--IRNGFIAFKDDETLERGNEISSELSQAIEESNV 76
            YDV +    ED        L + L         F        G  I SEL QA+  S+ 
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
            +++++  +   PWC  ++ + +       +     +  G+  A 
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTE-APGAEGCTIPLLSGLSRAA 111

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 51.6 bits (123), Expect = 8e-09
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALI-----------RNGFIAFKDDETLERGNEISSEL 67
            YD +LS+   D      +                    G+  F  D  L        ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 68  SQAIEESNVSIVILSKNYA-SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQK 126
           ++ +++S   I++++ NY     W + EL   +       + KV  +           Q+
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQE 121

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAAL--IRNGFIAFKDDETLERGNEISSELSQAIEESNV 76
           ++  F+S+   D      + L   L       +    +   + G  IS  +   IE+S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQK 126
           SI +LS N+  + WC  E               +  +     P      +
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTR 143

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 20  YDVFLSFRGEDTRNNFTDHLHAAL--IRNGFIAFKDDETLERGNEISSELSQAIEESNVS 77
           YD F+S+   D      + +   L      F           G  I   +  +IE+S+ +
Sbjct: 6   YDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG 116
           + +LS+N+  S W   EL           +     +   
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	196
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.91
2js7_A	160	Myeloid differentiation primary response protein M	99.91
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.9
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.1
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.95
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	86.79
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	85.64
2yvq_A	143	Carbamoyl-phosphate synthase; conserved hypothetic	80.98

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=6.1e-54  Score=352.80  Aligned_cols=162  Identities=38%  Similarity=0.728  Sum_probs=144.7

Q ss_pred             CCccccCCCCceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccC
Q 043461            8 SSSTHHQLLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYAS   87 (196)
Q Consensus         8 s~s~~~~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~   87 (196)
                      |++++...+.++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|||||++|++
T Consensus        24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~  103 (204)
T 3ozi_A           24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD  103 (204)
T ss_dssp             ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred             CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence            34444445789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeec
Q 043461           88 SPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ  167 (196)
Q Consensus        88 S~wCl~EL~~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~  167 (196)
                      |+||++||++|++|+++.++++||||||+|+|++||+|+| .||++|.+|++++.  ++++++||.||++||+++||++.
T Consensus       104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g-~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG-CYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCT-THHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccc-cHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence            9999999999999986436899999999999999999999 99999999998764  68999999999999999999998


Q ss_pred             CCCCC
Q 043461          168 DSGDV  172 (196)
Q Consensus       168 ~~~~~  172 (196)
                      ++.+-
T Consensus       181 ~~~~e  185 (204)
T 3ozi_A          181 KNDKQ  185 (204)
T ss_dssp             TTSCH
T ss_pred             CCCCH
Confidence            87643

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-52  Score=337.73  Aligned_cols=147  Identities=47%  Similarity=0.778  Sum_probs=128.0

Q ss_pred             CceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHH
Q 043461           17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELA   96 (196)
Q Consensus        17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~   96 (196)
                      +++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||+
T Consensus         6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~   85 (176)
T 3jrn_A            6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV   85 (176)
T ss_dssp             -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred             CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHhhcccceeec
Q 043461           97 KIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRVASLAGWHLQ  167 (196)
Q Consensus        97 ~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~  167 (196)
                      +|++|.++ ++++||||||+|+|++||+|+| .||++|.+|+++  .+++++++||.||++||+++||++.
T Consensus        86 ~i~~~~~~-~~~~ViPIfy~V~ps~Vr~q~g-~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           86 TIMDFEKK-GSITVMPIFYGVEPNHVRWQTG-VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHT-TSCEEEEEECSSCHHHHHHTCT-HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHhhhcc-CCCEEEEEEecCCHHHhhhccC-cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999987 8999999999999999999999 999999999987  4689999999999999999999995

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=3.1e-36  Score=237.16  Aligned_cols=136  Identities=18%  Similarity=0.311  Sum_probs=119.5

Q ss_pred             CCCceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHH
Q 043461           15 LLQSKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDE   94 (196)
Q Consensus        15 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~E   94 (196)
                      .+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            3578999999999999 568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCeEEEEEeecCCccccccCcchHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 043461           95 LAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAKYEEEFKENQEKVLKWRAAFTRV  158 (196)
Q Consensus        95 L~~i~~~~~~~~~~~ViPVfy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v  158 (196)
                      |..+++|... ++++||||||+++|++|++|.| .|+++|.....     ...+.++-+.|.++
T Consensus        95 l~~~~~~~~~-~~~~iiPV~~~v~p~~v~~~~~-~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESS-GRSRILPIWHKVSKDEVASFSP-TMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTT-SCCCEEEEEESCCTGGGTTTCC-CCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCEEEEEEecCCHHHHhhCCc-cHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            9999999877 7889999999999999999999 99988753322     23455555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=3e-30  Score=202.08  Aligned_cols=130  Identities=19%  Similarity=0.314  Sum_probs=93.1

Q ss_pred             CCceeeEEEccccccCcccHHHHHHHHHHc--CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHH
Q 043461           16 LQSKYDVFLSFRGEDTRNNFTDHLHAALIR--NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLD   93 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~   93 (196)
                      .++.|||||||+++|++  |+.+|+.+|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus         7 ~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            46789999999999964  89999999998  599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEEEeecCCccc----cccCcc---hHHHHHHHHHHHhccCHHHHHHHHHHH
Q 043461           94 ELAKIVECGNKRKDRKVFAVFYGVDPADA----RTQKGE---DFERVFAKYEEEFKENQEKVLKWRAAF  155 (196)
Q Consensus        94 EL~~i~~~~~~~~~~~ViPVfy~v~psdV----r~q~g~---~f~~~f~~~~~~~~~~~~~v~~W~~AL  155 (196)
                      |+..++.+... +..+||||||+++++++    +....-   .....|.++       .+.|.+|+.||
T Consensus        85 El~~al~~~~~-~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           85 QMLQALTEAPG-AEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHTSSS-SSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHhh-cCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            99999998744 34478899999886554    443310   233444433       47789999876

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.91  E-value=5e-26  Score=178.33  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=93.2

Q ss_pred             CCceeeEEEccccccCcccHHHH-HHHHHHcC--CceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461           16 LQSKYDVFLSFRGEDTRNNFTDH-LHAALIRN--GFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCL   92 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl   92 (196)
                      .++.|||||||+++|.  .|+.+ |..+|+++  |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3678999999999996  69986 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cccCCCCeEEEEEee-cCCcccc
Q 043461           93 DELAKIVEC-GNKRKDRKVFAVFYG-VDPADAR  123 (196)
Q Consensus        93 ~EL~~i~~~-~~~~~~~~ViPVfy~-v~psdVr  123 (196)
                      .|+..++.+ .+. +++.||||||+ +++..+.
T Consensus        80 ~El~~a~~~~~~~-~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDE-NNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGG-GTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhc-CCCEEEEEEecCCChhhcC
Confidence            999999864 444 67789999995 5554454

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.91  E-value=2.5e-25  Score=176.44  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=90.7

Q ss_pred             CceeeEEEccccccCcccHHHHHHHHHHcC--CceeEecCccCcCCCcccHHHHHHhh-hcceEEEEeeccccCChhHHH
Q 043461           17 QSKYDVFLSFRGEDTRNNFTDHLHAALIRN--GFIAFKDDETLERGNEISSELSQAIE-ESNVSIVILSKNYASSPWCLD   93 (196)
Q Consensus        17 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~l~~G~~i~~~i~~aI~-~S~i~IvV~S~~y~~S~wCl~   93 (196)
                      ++.|||||||+++|  ..||.+|..+|+++  |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+.
T Consensus        14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            57899999999999  47999999999985  69999999999999999999999999 799999999999999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEEEeecC
Q 043461           94 ELAKIVECGNKRKDRKVFAVFYGVD  118 (196)
Q Consensus        94 EL~~i~~~~~~~~~~~ViPVfy~v~  118 (196)
                      |+..++++...+++++||||+|+.-
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEccc
Confidence            9999998863325678999999754

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.90  E-value=9e-25  Score=173.09  Aligned_cols=103  Identities=19%  Similarity=0.321  Sum_probs=90.5

Q ss_pred             ceeeEEEccccccC---------cccHHHHHHH-HHH-cCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecccc
Q 043461           18 SKYDVFLSFRGEDT---------RNNFTDHLHA-ALI-RNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYA   86 (196)
Q Consensus        18 ~~yDVFISy~~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~   86 (196)
                      +.|||||||+++|+         ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         3679988665 699 799999999999999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHhcccCCCCeEEEEEeecCCc
Q 043461           87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA  120 (196)
Q Consensus        87 -~S~wCl~EL~~i~~~~~~~~~~~ViPVfy~v~ps  120 (196)
                       .|.||+.|+..++.+.-..+++.||||+|.-.+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999886332778999999875443

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.90  E-value=4.5e-25  Score=177.94  Aligned_cols=106  Identities=18%  Similarity=0.307  Sum_probs=88.9

Q ss_pred             CCceeeEEEccccccCcccHHHH-HHHHHHc--CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461           16 LQSKYDVFLSFRGEDTRNNFTDH-LHAALIR--NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCL   92 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl   92 (196)
                      .++.|||||||+++|+  .||.. |..+|++  +|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus        32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            5678999999999995  69975 9999998  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEEEee-cCCcccc
Q 043461           93 DELAKIVECGNKRKDRKVFAVFYG-VDPADAR  123 (196)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVfy~-v~psdVr  123 (196)
                      .|+..++.+..+++++.||||||+ +.+.++.
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp  141 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEPIPFYCIP  141 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence            999999975433267889999996 4443443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=1.6e-18  Score=165.85  Aligned_cols=103  Identities=19%  Similarity=0.323  Sum_probs=92.1

Q ss_pred             CCceeeEEEccccccCcccHH-HHHHHHHHc-----CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCCh
Q 043461           16 LQSKYDVFLSFRGEDTRNNFT-DHLHAALIR-----NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSP   89 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~   89 (196)
                      ..+.|||||||+++|.  .|| ..|...|++     .|+++|++++|+.+|+.+.++|.++|++||..|+|+|++|+.|+
T Consensus       667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            4679999999999995  587 779999985     58999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcccCCCCeEEEEEeecCCc
Q 043461           90 WCLDELAKIVECGNKRKDRKVFAVFYGVDPA  120 (196)
Q Consensus        90 wCl~EL~~i~~~~~~~~~~~ViPVfy~v~ps  120 (196)
                      ||..|+..++.+.-++++++||||||+..|.
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            9999999998776433788999999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.10  E-value=3.6e-06  Score=62.48  Aligned_cols=72  Identities=10%  Similarity=0.098  Sum_probs=53.8

Q ss_pred             ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHH
Q 043461           18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAK   97 (196)
Q Consensus        18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~   97 (196)
                      ..|.|||||..+|.    ...|...|.+.|+.. .|               ..|+.|.+.||+.++....|+||..|+..
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            57999999999982    334444444445422 22               67899999999999999999999999988


Q ss_pred             HHHhcccCCCCeEEEEE
Q 043461           98 IVECGNKRKDRKVFAVF  114 (196)
Q Consensus        98 i~~~~~~~~~~~ViPVf  114 (196)
                      +.+     .+..|+-|.
T Consensus        63 A~~-----~gkpIigV~   74 (111)
T 1eiw_A           63 ARK-----SSKPIITVR   74 (111)
T ss_dssp             HTT-----TTCCEEEEC
T ss_pred             HHH-----cCCCEEEEE
Confidence            876     445577665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.95  E-value=0.0029  Score=50.67  Aligned_cols=94  Identities=18%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             ccccCcccHHHHHHHHHHcCCceeEecCccC----cC----CCcccHHHHHHhhhcceEEEEeeccccCChhHHHHHHHH
Q 043461           27 RGEDTRNNFTDHLHAALIRNGFIAFKDDETL----ER----GNEISSELSQAIEESNVSIVILSKNYASSPWCLDELAKI   98 (196)
Q Consensus        27 ~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l----~~----G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~EL~~i   98 (196)
                      ..+|.  .....|..--.+..+-.|.|-.+.    .-    -..|...|.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            44553  355667666666666666775433    22    234677888999999999999999999999999999999


Q ss_pred             H-HhcccCCCCeEEEEEeecC-CccccccCc
Q 043461           99 V-ECGNKRKDRKVFAVFYGVD-PADARTQKG  127 (196)
Q Consensus        99 ~-~~~~~~~~~~ViPVfy~v~-psdVr~q~g  127 (196)
                      + +     .+..||-|.-+-. .+++..-.|
T Consensus       105 i~~-----~~~PII~Vy~~~~~~~~i~~~~g  130 (189)
T 3hyn_A          105 IGT-----KGLPVIVIYPDYDKKSDIVDSNG  130 (189)
T ss_dssp             TTT-----TCCCEEEEETTCCSGGGTBCTTS
T ss_pred             HHh-----cCCcEEEEECCccccchhhhccc
Confidence            8 5     4566888875422 334554344

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=86.79  E-value=3.3  Score=31.91  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             ccHHHHHHHHHHcCCceeEecCccCc-CCCcccHHHHHHhhhcceEEEEeec--cccCChhHHHHHHHHHHhc
Q 043461           33 NNFTDHLHAALIRNGFIAFKDDETLE-RGNEISSELSQAIEESNVSIVILSK--NYASSPWCLDELAKIVECG  102 (196)
Q Consensus        33 ~~fv~~L~~~L~~~Gi~vf~d~~~l~-~G~~i~~~i~~aI~~S~i~IvV~S~--~y~~S~wCl~EL~~i~~~~  102 (196)
                      ..+...+...|++.|+.+|.-.++-. ....+...-.++|++|++.|++++|  .-..+.-...|+..+....
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg   98 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   98 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence            36889999999999999988533211 2233444457899999999999996  3334556889999988743

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=85.64  E-value=7.7  Score=29.60  Aligned_cols=82  Identities=16%  Similarity=0.152  Sum_probs=52.7

Q ss_pred             CceeeEEEccccc--cCcccHHHHHHHHHHcCCceeEecCcc----CcCCC-------cccHHHHHHhhhcceEEEEeec
Q 043461           17 QSKYDVFLSFRGE--DTRNNFTDHLHAALIRNGFIAFKDDET----LERGN-------EISSELSQAIEESNVSIVILSK   83 (196)
Q Consensus        17 ~~~yDVFISy~~~--D~~~~fv~~L~~~L~~~Gi~vf~d~~~----l~~G~-------~i~~~i~~aI~~S~i~IvV~S~   83 (196)
                      +++..|||+=.-.  .........+...|++.| .|+.+..-    -..|.       .+...-.+.|++|++.|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3456799973222  111224588999999999 87654321    11221       122333578999999999997 


Q ss_pred             cccCChhHHHHHHHHHHhc
Q 043461           84 NYASSPWCLDELAKIVECG  102 (196)
Q Consensus        84 ~y~~S~wCl~EL~~i~~~~  102 (196)
                        ..+.-+..|+..+....
T Consensus        87 --~~d~Gt~~EiGyA~alg  103 (165)
T 2khz_A           87 --QPSLGVGYELGRAVALG  103 (165)
T ss_dssp             --SCCHHHHHHHHHHHHTC
T ss_pred             --CCCCCHHHHHHHHHHCC
Confidence              55777999999998743

>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}

Probab=80.98  E-value=3.7  Score=30.72  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             EEEccccccCcccHHHHHHHHHHcCCceeEec--------Ccc-----CcC---C-C-cccHHHHHHhhhcceEEEEeec
Q 043461           22 VFLSFRGEDTRNNFTDHLHAALIRNGFIAFKD--------DET-----LER---G-N-EISSELSQAIEESNVSIVILSK   83 (196)
Q Consensus        22 VFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d--------~~~-----l~~---G-~-~i~~~i~~aI~~S~i~IvV~S~   83 (196)
                      ||||.+..|.  .-+-.+...|...|++++--        +..     +..   | + .-.++|.+.|++-++-+||..|
T Consensus        27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~  104 (143)
T 2yvq_A           27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP  104 (143)
T ss_dssp             EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred             EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence            9999988763  33445677888888877621        111     111   1 1 0015688888888888888887


Q ss_pred             cc
Q 043461           84 NY   85 (196)
Q Consensus        84 ~y   85 (196)
                      +-
T Consensus       105 ~~  106 (143)
T 2yvq_A          105 NN  106 (143)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	196
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	9e-23
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	4e-19

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 9e-23
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSI 78
           ++  F+S+ G D+     + L   L + G      +     G  I   +   IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAK 136
            +LS N+  S WC  EL              +  +     P  +        + + A+
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMAR 128

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 4e-19
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 19  KYDVFLSFRGEDTRNNFTDHLHAAL--IRNGFIAFKDDETLERGNEISSELSQAIEESNV 76
            YD F+S+   D      + +   L      F           G  I   +  +IE+S+ 
Sbjct: 5   CYDAFVSYSERDAYW-VENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADARTQKGEDFERVFAK 136
           ++ +LS+N+  S WC  EL           +     +        A  Q+     ++   
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Query: 137 Y 137
            
Sbjct: 124 K 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	196
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.87
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.86
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.97
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	87.73

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.3e-23  Score=161.33  Aligned_cols=102  Identities=23%  Similarity=0.382  Sum_probs=91.9

Q ss_pred             CCceeeEEEccccccCcccHH-HHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHHHH
Q 043461           16 LQSKYDVFLSFRGEDTRNNFT-DHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCLDE   94 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl~E   94 (196)
                      .+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||..|
T Consensus         9 ~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E   86 (161)
T d1fyva_           9 RNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYE   86 (161)
T ss_dssp             SCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHH
T ss_pred             CCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHH
Confidence            4689999999999994  477 5799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCeEEEEEeecCC
Q 043461           95 LAKIVECGNKRKDRKVFAVFYGVDP  119 (196)
Q Consensus        95 L~~i~~~~~~~~~~~ViPVfy~v~p  119 (196)
                      +..++.+....+...+|||+++.-|
T Consensus        87 ~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          87 LYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHcCCCceeEEEEecCc
Confidence            9999887644367899999986433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.4e-23  Score=157.39  Aligned_cols=102  Identities=20%  Similarity=0.284  Sum_probs=88.6

Q ss_pred             CCceeeEEEccccccCcccHH-HHHHHHHHc--CCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeeccccCChhHH
Q 043461           16 LQSKYDVFLSFRGEDTRNNFT-DHLHAALIR--NGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKNYASSPWCL   92 (196)
Q Consensus        16 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~--~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~y~~S~wCl   92 (196)
                      ..+.|||||||+++|.  .|| ..|...|++  .|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            4678999999999994  576 568999976  48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEEEeecCC
Q 043461           93 DELAKIVECGNKRKDRKVFAVFYGVDP  119 (196)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVfy~v~p  119 (196)
                      .|+..++....+.++..+|||+++..+
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            999887665432267899999996433

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.97  E-value=0.18  Score=33.62  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             ceeeEEEccccccCcccHHHHHHHHHHcCCceeEecCccCcCCCcccHHHHHHhhhcceEEEEeecc
Q 043461           18 SKYDVFLSFRGEDTRNNFTDHLHAALIRNGFIAFKDDETLERGNEISSELSQAIEESNVSIVILSKN   84 (196)
Q Consensus        18 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~l~~G~~i~~~i~~aI~~S~i~IvV~S~~   84 (196)
                      ...+|||..-|++. ...+..|...|++.||++.+|..    +..+...+..|-..---.++|+.++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35789999988875 47889999999999999999864    4566666777655444455555543

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.73  E-value=1.2  Score=32.24  Aligned_cols=73  Identities=12%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             cCcccHHHHHHHHHHcCCceeEecCcc-CcCCCcccHHHHHHhhhcceEEEEeec--cccCChhHHHHHHHHHHhc
Q 043461           30 DTRNNFTDHLHAALIRNGFIAFKDDET-LERGNEISSELSQAIEESNVSIVILSK--NYASSPWCLDELAKIVECG  102 (196)
Q Consensus        30 D~~~~fv~~L~~~L~~~Gi~vf~d~~~-l~~G~~i~~~i~~aI~~S~i~IvV~S~--~y~~S~wCl~EL~~i~~~~  102 (196)
                      |....+...+...|+..|+.++.-.++ ......|-..-.++|++|++.|.++++  .-..+.=+..|+..+....
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~alg   90 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   90 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCC
Confidence            334567889999999999999874322 222234666677899999999999985  2234566889999998743