Citrus Sinensis ID: 043551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MENGAVKSGGRGGDMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYICPSSKICVSFLSSGRTEALDFNCSMAL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEccccEccccccccccccEEEccccHHHcccccccHcccccccccccccccccEEccEEEEcccccEEEEEEEcccccccccccEEcccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccEEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccccHEcHHcccccccccccccHccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccEEcccEEEEcccccccccccEEEEEEccccccHccccccccc
Coil and Loop (DISEMBL)
mengavksggrggdmeaVLVPACIinkrrrrerdpslgigfnnVNQQVEQQADQAAAATTAAAATTVKrsskyrgvsrhrwtgryeahlwdkgswnptqrkkgkqgaydEEESAARAYDLAALKywgtstftnfpvseyEKEIEIMKTVTREEYLATLRRRssgfsrgvskhhhnrrWEARIGRvfgnkylylgtygtqeeaaHAYDIAAIEHrginavtnfDISTYIRwlkpaaggnshnpafqepkpileyspptssllsnhilteghqitdisifndsnpfplqdqdipkkqdsfqaniksslpfspctksssssptALSLLLRSSVFKELVeknpnnsaevnieendtkngpkigskneveetlydefvinnpvqyicpssKICVSFLssgrtealdfncsmal
Flexible Loop (DISEMBL)
mengavksggrggdmeavlVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAaattvkrsskyrgvsrhrwtgryeahlwdkgswnptqrkkgkqgaYDEEESAARAYDLAALKYWGTstftnfpvseyeKEIEIMKTVTREEYLATlrrrssgfsrgvskhhhnrrwearigrvfGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSlpfspctkssssspTALSLLLRSSVFKELVeknpnnsaevnieendtkngpkigSKNEVEETLYDEFVINNPVQYICPSSKICVSFLSSGrtealdfncsmal
Low Complexity Region (SEG)
MENGAVKSGGRGGDMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQaaaattaaaattVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLrrrssgfsrgvsKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKsslpfspctksssssptalslllrssVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYICPSSKICVSFLSSGRTEALDFNCSMAL
Disordered region (IsUnstruct)
****************AVLVPACIIN**********************************************YRGVSRHRWTGRYEAHLWDKGSW********************RAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRR***F**GVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPA***************************SNHILTEGHQITDISIFN**************************************************************************************ETLYDEFVINNPVQYICPSSKICVSFLSSGRTEALDF******
Disordered Region (DISOPRED)
****************************************************************************SRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSS*************RWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYI********************************************************************************************************************************************YDEFVINNPVQYICPSSKICVSFLSSGRTEALDFNCSMAL
Disordered Region (DISEMBL)
***********GGDMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVE***************************SRHRWTGRYEAHLWDKGSWNP***************SAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRS*************RRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPF************ALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYICPSSKICVSFLSSGRTEALDFNCSMAL
Disordered Region (DISPRO)
****************AVLVPACIINKRRRRERDPSLG*G*****************************SSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPA************************************************************************************P*ALS*LLRSSVFKELVEKN***********************NEVEETLYDEFVINNPVQYICPSSKICVSFLSS**TE****NCS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENGAVKSGGRGGDMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYICPSSKICVSFLSSGRTEALDFNCSMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q6X5Y6	430	Ethylene-responsive trans	yes	no	0.409	0.388	0.732	2e-64
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.455	0.321	0.620	7e-63
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.392	0.276	0.680	2e-62
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.392	0.273	0.680	3e-62
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.392	0.286	0.662	6e-61
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.441	0.316	0.572	4e-60
Q38914	555	AP2-like ethylene-respons	no	no	0.392	0.288	0.662	5e-60
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.406	0.289	0.628	5e-59
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.392	0.385	0.650	1e-58
Q94AN4	345	AP2-like ethylene-respons	no	no	0.441	0.521	0.671	2e-56

>sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 141/176 (80%), Gaps = 9/176 (5%)

Query: 66  TVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAA 122
           + +RSS YRGV+RHRWTGR+EAHLWDK SWN  Q KKGKQ   GAYD EE+AA  YDLAA
Sbjct: 59  STRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQVYLGAYDSEEAAAHTYDLAA 118

Query: 123 LKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNR 176
           LKYWG  T  NFP   Y KE+E M+ VT+EEYLA+LRR+SSGFSRGVSK      HHHN 
Sbjct: 119 LKYWGPDTILNFPAETYTKELEEMQRVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNG 178

Query: 177 RWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLK 232
           RWEARIGRVFGNKYLYLGTY TQEEAA AYD+AAIE+RG NAVTNFDIS YI  LK
Sbjct: 179 RWEARIGRVFGNKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIDRLK 234

May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional activator involved in the activation of a subset of sugar-responsive genes and the control of carbon flow from sucrose import to oil accumulation in developing seeds. Binds to the GCC-box pathogenesis-related promoter element. Promotes sugar uptake and seed oil accumulation by glycolysis. Required for embryo development, seed germination and, indirectly, for seedling establishment. Negative regulator of the ABA-mediated germination inhibition.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  241 bits (615), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 146/195 (74%), Gaps = 9/195 (4%)

Query: 42  NNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRK 101
           NN+  Q +   D   A       +  +R+S YRGV+RHRWTGRYEAHLWD       Q +
Sbjct: 180 NNLVAQGKTIDDSVEATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTR 239

Query: 102 KGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATL 158
           KG+Q   G YD+EE AARAYDLAALKYWGT+T TNFP+SEYEKEIE MK +TR+EY+A+L
Sbjct: 240 KGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASL 299

Query: 159 RRRSSGFS------RGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIE 212
           RR+SSGFS      RGV++HH + RW+ARIGRV GNK LYLGT+GTQEEAA AYDIAAI+
Sbjct: 300 RRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIK 359

Query: 213 HRGINAVTNFDISTY 227
            RG+ AVTNFD++ Y
Sbjct: 360 FRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 138/169 (81%), Gaps = 9/169 (5%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+EE AARAYDLAALK
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFS------RGVSKHHHNRRW 178
           YWGT+T TNFP+SEYEKE+E MK +TR+EY+A+LRR+SSGFS      RGV++HH + RW
Sbjct: 266 YWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           +ARIGRV GNK LYLGT+GTQEEAA AYDIAAI+ RG+ AVTNFD++ Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  239 bits (610), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 139/169 (82%), Gaps = 9/169 (5%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+EE AARAYDLAALK
Sbjct: 206 QRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALK 265

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFS------RGVSKHHHNRRW 178
           YWGT+T TNFP+SEYEKE+E MK +TR+EY+A+LRR+SSGFS      RGV++HH + RW
Sbjct: 266 YWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRW 325

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           +ARIGRV GNK LYLGT+GTQEEAA AYDIAAI+ RG++AVTNFD++ Y
Sbjct: 326 QARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRY 374

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  235 bits (599), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/169 (66%), Positives = 135/169 (79%), Gaps = 9/169 (5%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+E+ AARAYDLAALK
Sbjct: 199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRG------VSKHHHNRRW 178
           YWG +T TNFP+S YE E+E MK +TR+E++A+LRR+SSGFSRG      V++HH + RW
Sbjct: 259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI+ RG+NAVTNFDIS Y
Sbjct: 319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRY 367

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  232 bits (592), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 145/201 (72%), Gaps = 21/201 (10%)

Query: 48  VEQQADQAAAATTAAAATTV------------KRSSKYRGVSRHRWTGRYEAHLWDKGSW 95
            E  AD +++ T  +    V            +R+S YRGV+RHRWTGRYEAHLWD    
Sbjct: 154 AETSADNSSSTTNTSGGAIVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCR 213

Query: 96  NPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTRE 152
              Q +KG+Q   G YD+EE AARAYDLAALKYWG ST TNFP++ YEKE+E MK +TR+
Sbjct: 214 REGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQ 273

Query: 153 EYLATLRRRSSGFS------RGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAY 206
           E++A++RR+SSGFS      RGV++HH + RW+ARIGRV GNK LYLGT+ T+EEAA AY
Sbjct: 274 EFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAY 333

Query: 207 DIAAIEHRGINAVTNFDISTY 227
           DIAAI+ RG+NAVTNF+I+ Y
Sbjct: 334 DIAAIKFRGLNAVTNFEINRY 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  231 bits (590), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/169 (66%), Positives = 131/169 (77%), Gaps = 9/169 (5%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +R+S+YRGV+RHRWTGRYEAHLWD         +KG+Q   G YD EE AARAYDLAALK
Sbjct: 279 QRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALK 338

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRG------VSKHHHNRRW 178
           YWG ST TNF    Y+KEIE MK +TR+EY+A LRR+SSGFSRG      V++HH + RW
Sbjct: 339 YWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRW 398

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           +ARIGRV GNK LYLGT+GTQEEAA AYD+AAI+ RG NAVTNFDI+ Y
Sbjct: 399 QARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  228 bits (582), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 137/175 (78%), Gaps = 9/175 (5%)

Query: 62  AAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAY 118
           A  T  +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+E+ AAR+Y
Sbjct: 171 ALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSY 230

Query: 119 DLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFS------RGVSKH 172
           DLAALKYWG ST TNFP++ YEKE+E MK +TR+E++A +RR+SSGFS      RGV++H
Sbjct: 231 DLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRH 290

Query: 173 HHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           H + RW+ARIGRV GNK LYLGT+ T+EEAA AYDIAAI+ RG+NAVTNF+I+ Y
Sbjct: 291 HQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 132/169 (78%), Gaps = 9/169 (5%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +R+S+YRGV+RHRWTGRYEAHLWD       Q ++G+Q   G YDEEE AARAYDLAALK
Sbjct: 219 QRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALK 278

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRG------VSKHHHNRRW 178
           YWG +T  NFP+S YEKEIE +  + R+E++A LRR SSGFSRG      V++HH + RW
Sbjct: 279 YWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRW 338

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
           +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI+ RG+NAVTNFDI+ Y
Sbjct: 339 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 9/189 (4%)

Query: 68  KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
           +RSS +RGV+RHRWTGRYEAHLWDK SWN TQ KKG+Q   GAYDEE++AARAYDLAALK
Sbjct: 54  QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALK 113

Query: 125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRW 178
           YWG  T  NFP+  YE++I+ M++ ++EEY+ +LRR+SSGFSRGVSK      HHHN RW
Sbjct: 114 YWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRW 173

Query: 179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGN 238
           EARIGRVFGNKYLYLGTY TQEEAA AYDIAAIE+RG+NAVTNFDIS Y++   P    +
Sbjct: 174 EARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPID 233

Query: 239 SHNPAFQEP 247
           + N   + P
Sbjct: 234 TANNLLESP 242

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
359488972	402	PREDICTED: AP2-like ethylene-responsive	0.813	0.825	0.608	1e-109
147866285	404	hypothetical protein VITISV_042445 [Viti	0.813	0.821	0.608	1e-109
255552862	372	conserved hypothetical protein [Ricinus	0.816	0.895	0.616	1e-108
224111258	418	AP2 domain-containing transcription fact	0.806	0.787	0.648	1e-107
225424916	336	PREDICTED: ethylene-responsive transcrip	0.742	0.901	0.624	1e-104
224140943	386	AP2 domain-containing transcription fact	0.808	0.854	0.599	1e-103
356529949	389	PREDICTED: ethylene-responsive transcrip	0.789	0.827	0.585	1e-100
356567024	389	PREDICTED: ethylene-responsive transcrip	0.794	0.832	0.576	1e-100
356570045	406	PREDICTED: AP2-like ethylene-responsive	0.754	0.758	0.607	1e-95
356524132	407	PREDICTED: AP2-like ethylene-responsive	0.745	0.746	0.608	3e-95

>gi|359488972|ref|XP_003633849.1| PREDICTED: AP2-like ethylene-responsive transcription factor AIL5-like [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/363 (60%), Positives = 261/363 (71%), Gaps = 31/363 (8%)

Query: 29  RRRERDPSL-GIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEA 87
           +RR RDP++  +G    + Q +QQ         A+AATTVKRSS++RGVSRHRWTGR+EA
Sbjct: 29  KRRRRDPAIVTLG---CDDQSQQQQLPNQQPDQASAATTVKRSSRFRGVSRHRWTGRFEA 85

Query: 88  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMK 147
           HLWDK SWN TQ+KKGKQGAYDEEESAARAYDLAALKYWG STFTNFPVS+YEKEIEIM+
Sbjct: 86  HLWDKFSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGASTFTNFPVSDYEKEIEIMQ 145

Query: 148 TVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYLGTYGTQEE 201
           +VT+EEYLA LRR+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYLGTY TQEE
Sbjct: 146 SVTKEEYLACLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEE 205

Query: 202 AAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLL 261
           AA AYDIAAIE+RGINAVTNFD+STYIRWL PAA    +NP    P      + P +   
Sbjct: 206 AARAYDIAAIEYRGINAVTNFDLSTYIRWLNPAA----NNPVV--PHESRANTEPQALAS 259

Query: 262 SNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKSSSSSPTA 321
           SN +L+E  +     +F  SN F + D + P KQ+ FQ  I    P  PC+K  SSSPTA
Sbjct: 260 SNFVLSEESE----PLFFHSNSFTMDDLNPPHKQEVFQTKI----PIEPCSK--SSSPTA 309

Query: 322 LSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYI 381
           L LLLRSS+F+ELVEKN +N+ E   +  DTKN  ++GS +E     YD       + ++
Sbjct: 310 LGLLLRSSIFRELVEKN-SNAPEDETDAEDTKNQQQVGSDDEY-GIFYDGI---GDIPFV 364

Query: 382 CPS 384
           CPS
Sbjct: 365 CPS 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866285|emb|CAN79925.1| hypothetical protein VITISV_042445 [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/363 (60%), Positives = 261/363 (71%), Gaps = 31/363 (8%)

Query: 29  RRRERDPSL-GIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEA 87
           +RR RDP++  +G    + Q +QQ         A+AATTVKRSS++RGVSRHRWTGR+EA
Sbjct: 31  KRRRRDPAIVTLG---CDDQSQQQQLPNQQPDQASAATTVKRSSRFRGVSRHRWTGRFEA 87

Query: 88  HLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMK 147
           HLWDK SWN TQ+KKGKQGAYDEEESAARAYDLAALKYWG STFTNFPVS+YEKEIEIM+
Sbjct: 88  HLWDKFSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGASTFTNFPVSDYEKEIEIMQ 147

Query: 148 TVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYLGTYGTQEE 201
           +VT+EEYLA LRR+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYLGTY TQEE
Sbjct: 148 SVTKEEYLACLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEE 207

Query: 202 AAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLL 261
           AA AYDIAAIE+RGINAVTNFD+STYIRWL PAA    +NP    P      + P +   
Sbjct: 208 AARAYDIAAIEYRGINAVTNFDLSTYIRWLNPAA----NNPVV--PHESRANTEPQALAS 261

Query: 262 SNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKSSSSSPTA 321
           SN +L+E  +     +F  SN F + D + P KQ+ FQ  I    P  PC+K  SSSPTA
Sbjct: 262 SNFVLSEESE----PLFFHSNSFTMDDLNPPHKQEVFQTKI----PIEPCSK--SSSPTA 311

Query: 322 LSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYI 381
           L LLLRSS+F+ELVEKN +N+ E   +  DTKN  ++GS +E     YD       + ++
Sbjct: 312 LGLLLRSSIFRELVEKN-SNAPEDETDAEDTKNQQQVGSDDEY-GIFYDGI---GDIPFV 366

Query: 382 CPS 384
           CPS
Sbjct: 367 CPS 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552862|ref|XP_002517474.1| conserved hypothetical protein [Ricinus communis] gi|223543485|gb|EEF45016.1| conserved hypothetical protein [Ricinus communis]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/357 (61%), Positives = 258/357 (72%), Gaps = 24/357 (6%)

Query: 20  VPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRH 79
           V  C+  KRRRR+       G ++ + Q +QQ      A   +AATTVKRSS+YRGVSRH
Sbjct: 26  VARCV--KRRRRDAAVVTVGGDDSQSHQQQQQQQPEQQAHQISAATTVKRSSRYRGVSRH 83

Query: 80  RWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEY 139
           RWTGR+EAHLWDK SWN TQ+KKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFP+S+Y
Sbjct: 84  RWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDY 143

Query: 140 EKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYL 193
           EKEIEIM+TVT+EEYLA+LRR+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYL
Sbjct: 144 EKEIEIMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYL 203

Query: 194 GTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEY 253
           GTY TQEEAA AYDIAAIE+RGINAVTNFD+STYIRWLKP         A  EP+ + E 
Sbjct: 204 GTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPEVAA---QVAANEPQTVAES 260

Query: 254 SPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTK 313
               S  ++N I  E  + +    F  + PF L     P+KQ+ FQ    +  P +PC+K
Sbjct: 261 RMLPS--INNRIAREESKPS----FFSATPFSLDCWSYPRKQEEFQ----NRTPITPCSK 310

Query: 314 SSSSSPTALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYD 370
             +SSPTALSLLLRSS+F+ELVEKN N S + N E  +TKN  +IGS +E     Y+
Sbjct: 311 --TSSPTALSLLLRSSIFRELVEKNSNVSEDEN-EGEETKNQSQIGSDDEFGGLFYE 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111258|ref|XP_002315794.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222864834|gb|EEF01965.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/356 (64%), Positives = 265/356 (74%), Gaps = 27/356 (7%)

Query: 23  CIINKRRRRERDPSLGIGFNNVNQQVEQQADQAA--AATTAAAATTVKRSSKYRGVSRHR 80
           CI    +RR RDPS      N+N Q   Q  Q       TAA ATTVKRSS++RGVSRHR
Sbjct: 33  CI----KRRRRDPSTFALSCNINDQQSDQQQQQQSLGDRTAAVATTVKRSSRFRGVSRHR 88

Query: 81  WTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYE 140
           WTGR+EAHLWDKG+WNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFP S+YE
Sbjct: 89  WTGRFEAHLWDKGTWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPASDYE 148

Query: 141 KEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYLG 194
           KEIEIMKTVT+EEYLA+LRRRSSGFSRGVSK      HHHN RWEARIGRVFGNKYLYLG
Sbjct: 149 KEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLG 208

Query: 195 TYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYS 254
           TY TQEEAAHAYDIAAIE+RGINAVTNFD+STYIRWLKP A   +  P  QE KP  +  
Sbjct: 209 TYSTQEEAAHAYDIAAIEYRGINAVTNFDLSTYIRWLKPEASLPA--PQTQESKPASD-- 264

Query: 255 PPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKS 314
           P   +  SNH+ +E  + T +S+    +P  + + + PK +D F    + +LP SP T+S
Sbjct: 265 PLPMATFSNHLPSE--KPTQLSVLQ-MDPSLMDNLNTPKNEDIFH---RKTLPVSPLTRS 318

Query: 315 SSSSPTALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYD 370
           SSS+  ALSLL +SS+FKELVEKN N ++E  IEEND+KN P  G+ N   E  YD
Sbjct: 319 SSST--ALSLLFKSSIFKELVEKNLNTTSE-EIEENDSKN-PHNGNNN-AGEAFYD 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424916|ref|XP_002270149.1| PREDICTED: ethylene-responsive transcription factor WRI1 [Vitis vinifera] gi|296086424|emb|CBI32013.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/341 (62%), Positives = 251/341 (73%), Gaps = 38/341 (11%)

Query: 13  GDMEAVLVPACIINKRRRRERDPS-LGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSS 71
            + +A+ V  C+    +RR RDPS +  G +   +Q +Q   QA  + TA A TT+KRSS
Sbjct: 20  AETDALEVTKCV----KRRRRDPSAVTPGCSKQGEQQKQVLLQAGQSITAIA-TTMKRSS 74

Query: 72  KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGT 128
           ++RGVSRHRWTGR+EAHLWDKGSWN TQRKKGKQ   GAYDEEESAARAYDLAALKYWG 
Sbjct: 75  RFRGVSRHRWTGRFEAHLWDKGSWNVTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGP 134

Query: 129 STFTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARI 182
           STFTNFPVS+YEKEIEIM+ +T+EEYLA+LRRRSSGFSRGVSK      HHHN RWEARI
Sbjct: 135 STFTNFPVSDYEKEIEIMQGLTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARI 194

Query: 183 GRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNP 242
           GRVFGNKYLYLGTY TQEEAAHAYDIAAIE+RGINAVTNF++STY+RWL+P A   +  P
Sbjct: 195 GRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFELSTYVRWLRPRA--TALTP 252

Query: 243 AFQEPK--PILEYSPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQA 300
             QEP+   I++ S       SN +  E  +++    F   NPF + D   P KQ+ FQ 
Sbjct: 253 --QEPRSNSIMQAS-------SNCLPNEEVELS----FLSPNPFTVDDLATPLKQEKFQR 299

Query: 301 NIKSSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPNN 341
            +      SPCTK  SSSPTALSLL RSSVF++LVEKN N+
Sbjct: 300 EVS----ISPCTK--SSSPTALSLLHRSSVFRQLVEKNSNS 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140943|ref|XP_002323836.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222866838|gb|EEF03969.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/357 (59%), Positives = 256/357 (71%), Gaps = 27/357 (7%)

Query: 20  VPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRH 79
           V  C+    +RR RDP++    ++ NQ  +Q   +    T+AA  TTVKRSS++RGVSRH
Sbjct: 24  VARCV----KRRRRDPAIVALGSDDNQSQQQMPQKQTDQTSAA--TTVKRSSRFRGVSRH 77

Query: 80  RWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEY 139
           RWTGR+EAHLWDK SWN TQ+KKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFP+S+Y
Sbjct: 78  RWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDY 137

Query: 140 EKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYL 193
           EKEIEIM+TVT+EEYLA+LRR+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYL
Sbjct: 138 EKEIEIMQTVTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYL 197

Query: 194 GTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEY 253
           GTY TQEEAA AYDIAAIE+RGINAVTNFD+STYIRW+KP   G +   A  E + + + 
Sbjct: 198 GTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWIKP---GVAAQAAANELQTVTD- 253

Query: 254 SPPTSSLLSNHILTEGHQITDISIFNDSNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTK 313
            P T++ L++       + T  S+F   N F     + P K D+FQ NI         + 
Sbjct: 254 -PQTAATLTDTYTP--REETKPSLFL-PNQFTADYLNSPPKLDAFQNNIFVD------SS 303

Query: 314 SSSSSPTALSLLLRSSVFKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYD 370
           + +SSPTALSLLLRSSVF+ELVEKN +N  E   + N+ KN P  GS +E     YD
Sbjct: 304 NKTSSPTALSLLLRSSVFRELVEKN-SNVCEEETDGNEIKNQPMAGSDDEYGGIFYD 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529949|ref|XP_003533548.1| PREDICTED: ethylene-responsive transcription factor WRI1-like [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/352 (58%), Positives = 248/352 (70%), Gaps = 30/352 (8%)

Query: 38  GIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNP 97
           G G +N  QQ+ QQ  +    TT     T KRSS++RGVSRHRWTGRYEAHLWDK SWN 
Sbjct: 43  GSGDDNHQQQLPQQ--EVGENTTV---NTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNI 97

Query: 98  TQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLAT 157
           TQ+KKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFP+S+YEKEI+IM+T+T+EEYLAT
Sbjct: 98  TQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIQIMQTMTKEEYLAT 157

Query: 158 LRRRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAI 211
           LRR+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYLGTY TQEEAA AYDIAAI
Sbjct: 158 LRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAI 217

Query: 212 EHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQ 271
           E+RGI+AVTNFD+STYI+WLKP+ GG     A  E    LE+    S   SN+ LTE  +
Sbjct: 218 EYRGIHAVTNFDLSTYIKWLKPSGGGTL--EANLESHAALEHQKVASP--SNYALTE--E 271

Query: 272 ITDISIFND-SNPFPLQDQDIPKKQDSFQANIKSSLPFSPCTKSSSSSPTALSLLLRSSV 330
              +++ N   +P+ L   D P K + F      +  FS    + SSSPTAL LLLRSS+
Sbjct: 272 SKSLALHNSFFSPYSL---DSPVKHERFG---NKTYQFSS---NKSSSPTALGLLLRSSL 322

Query: 331 FKELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYIC 382
           F+ELVEKN N S E +  E       +I + +++    +D F   + + ++C
Sbjct: 323 FRELVEKNSNVSGEEDDGEATKDQQTQIATDDDLGGIFFDSF---SDIPFVC 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567024|ref|XP_003551723.1| PREDICTED: ethylene-responsive transcription factor WRI1-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/354 (57%), Positives = 247/354 (69%), Gaps = 30/354 (8%)

Query: 40  GFNNVNQQVEQQADQAAAATTAAAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQ 99
           G +N +QQ+ QQ          ++ +T KRSS++RGVSRHRWTGRYEAHLWDK SWN TQ
Sbjct: 45  GDDNHHQQLPQQE-----VGENSSISTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQ 99

Query: 100 RKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLR 159
           +KKGKQGAYDEEESAARAYDLAALKYWG STFTNFP+S+YEKEIEIM+T+T+EEYLATLR
Sbjct: 100 KKKGKQGAYDEEESAARAYDLAALKYWGNSTFTNFPISDYEKEIEIMQTMTKEEYLATLR 159

Query: 160 RRSSGFSRGVSK------HHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEH 213
           R+SSGFSRGVSK      HHHN RWEARIGRVFGNKYLYLGTY TQEEAA AYDIAAIE+
Sbjct: 160 RKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEY 219

Query: 214 RGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPILEYSPPTSSLLSNHILTEGHQIT 273
           RGI+AVTNFD+STYI+WLKP+ GG        E   +LE+    S   SN+ LTE  +  
Sbjct: 220 RGIHAVTNFDLSTYIKWLKPSGGGTPEENL--ESHAVLEHQKLASP--SNYALTEESKSL 275

Query: 274 DISIFNDSNPFPLQDQ-DIPKKQDSFQANIKSSLPFSPCTKSSSSSPTALSLLLRSSVFK 332
            +      N F   D  D P K +SF      +  FS   ++ SSSPTAL LLLRSS+F+
Sbjct: 276 VL-----PNSFISPDSLDSPVKHESFG---NKTYQFS---RNKSSSPTALGLLLRSSLFR 324

Query: 333 ELVEKNPNNSAEVNIEENDTKNGPKIGSKNEVEETLYDEFVINNPVQYICPSSK 386
           ELVEKN N S E    E      P++ S ++++   +D F     + ++C  ++
Sbjct: 325 ELVEKNSNVSGEEADGEVTKDQQPQLASDDDLDGIFFDSF---GDIPFVCDPTR 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570045|ref|XP_003553203.1| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine max]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/341 (60%), Positives = 248/341 (72%), Gaps = 33/341 (9%)

Query: 14  DMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKY 73
           D   V+   C   KRRRR+   ++  G     +Q+E+Q      +T    ATTVKRSS++
Sbjct: 21  DGSDVISTKCA--KRRRRDSSMAVLGGNGQQGEQLEEQKQLGGQST----ATTVKRSSRF 74

Query: 74  RGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTST 130
           RGVSRHRWTGR+EAHLWDKG+WNPTQ+KKGKQ   GAY++EE+AARAYDLAALKYWGTST
Sbjct: 75  RGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTST 134

Query: 131 FTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGR 184
           FTNFPVS+YEKEIEIMKTVT+EEYLA+LRRRSSGFSRGVSK      HHHN RWEARIGR
Sbjct: 135 FTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGR 194

Query: 185 VFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAF 244
           VFGNKYLYLGTY TQEEAA AYDIAAIE+RGINAVTNFD+STYIRWL+P     +H  A 
Sbjct: 195 VFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPG----THPTAS 250

Query: 245 QEPKPILEYSPPTSSLLSNHILTEGHQITDISIFN-DSNPFPLQDQDIPKKQDSFQANIK 303
            + KP  +     +   SN + T G    +I + N + + FP  + D  KK+D F   + 
Sbjct: 251 HDQKPSTDAQLFAT---SNSMQTRG----NIEVSNSNMHSFPSGELDSTKKRD-FSKYMN 302

Query: 304 SSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPNNSAE 344
              P SPC K   SSPTAL LLL+SSVF+EL+++N N+S+E
Sbjct: 303 ---PLSPCNK--PSSPTALGLLLKSSVFRELMQRNLNSSSE 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524132|ref|XP_003530686.1| PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Glycine max]

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 205/337 (60%), Positives = 243/337 (72%), Gaps = 33/337 (9%)

Query: 14  DMEAVLVPACIINKRRRRERDPSLGIGFNNVNQQVEQQADQAAAATTAAAATTVKRSSKY 73
           D   V+   C+  KRRRR+   ++  G     +Q+E+Q      +T    ATTVKRSS++
Sbjct: 21  DGSEVIGTKCV--KRRRRDSSTAVLGGNGQQGEQLEEQKQLGGQST----ATTVKRSSRF 74

Query: 74  RGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGTST 130
           RGVSRHRWTGR+EAHLWDKG+WNPTQ+KKGKQ   GAY++EE+AARAYDLAALKYWG ST
Sbjct: 75  RGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGIST 134

Query: 131 FTNFPVSEYEKEIEIMKTVTREEYLATLRRRSSGFSRGVSK------HHHNRRWEARIGR 184
           FTNFPVS+YEKEIEIMKTVT+EEYLA+LRRRSSGFSRGVSK      HHHN RWEARIGR
Sbjct: 135 FTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGR 194

Query: 185 VFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAF 244
           VFGNKYLYLGTY TQEEAA AYDIAAIE+RGINAVTNFD+STYIRWL+P     +H  A 
Sbjct: 195 VFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPG----THPTAS 250

Query: 245 QEPKPILEYSPPTSSLLSNHILTEGHQITDISIFN-DSNPFPLQDQDIPKKQDSFQANIK 303
            + KP  +  P  +   SN +   G    +I + N + N FP    D  KK+D F   + 
Sbjct: 251 HDQKPSTDAQPFAT---SNSMQARG----NIEVSNSNKNSFPSGKLDSTKKRD-FSKYMN 302

Query: 304 SSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPN 340
              P SPC K   SSPTAL LLL+SSVF+EL+++N N
Sbjct: 303 ---PLSPCNK--PSSPTALGLLLKSSVFRELMQRNLN 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.458	0.597	0.605	5.7e-59
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.441	0.521	0.613	1.9e-58
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.392	0.288	0.603	2.3e-52
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.458	0.320	0.550	2.7e-52
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.490	0.358	0.520	1.1e-50
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.392	0.281	0.591	2.8e-50
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.392	0.385	0.591	1.5e-49
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.392	0.278	0.579	2.5e-49
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.514	0.421	0.502	5.2e-49
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.409	0.386	0.413	1.8e-30

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 123/203 (60%), Positives = 145/203 (71%)

Query:    67 VKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAAL 123
             ++RSS YRGV+RHRWTGRYEAHLWDK SWN TQ KKG+Q   GAYDEEE+AARAYDLAAL
Sbjct:    47 LQRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAAL 106

Query:   124 KYWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXXK------HHHNRR 177
             KYWG  T  NFP+  Y+++++ M+  ++EEY+ +L            K      HHHN R
Sbjct:   107 KYWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGR 166

Query:   178 WEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGG 237
             WEARIGRVFGNKYLYLGTY TQEEAA AYDIAAIE+RG+NAVTNFD+S   R+L P A  
Sbjct:   167 WEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDVS---RYLNPNAAA 223

Query:   238 NSHNPAFQEPKPILEYS-PPTSS 259
             +    A  + KPI   S  P SS
Sbjct:   224 DK---ADSDSKPIRSPSREPESS 243

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 116/189 (61%), Positives = 139/189 (73%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +RSS +RGV+RHRWTGRYEAHLWDK SWN TQ KKG+Q   GAYDEE++AARAYDLAALK
Sbjct:    54 QRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALK 113

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXXK------HHHNRRW 178
             YWG  T  NFP+  YE++I+ M++ ++EEY+ +L            K      HHHN RW
Sbjct:   114 YWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRW 173

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGN 238
             EARIGRVFGNKYLYLGTY TQEEAA AYDIAAIE+RG+NAVTNFDIS Y++   P    +
Sbjct:   174 EARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRYLKLPVPENPID 233

Query:   239 SHNPAFQEP 247
             + N   + P
Sbjct:   234 TANNLLESP 242

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 102/169 (60%), Positives = 119/169 (70%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S+YRGV+RHRWTGRYEAHLWD         +KG+Q   G YD EE AARAYDLAALK
Sbjct:   279 QRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALK 338

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG ST TNF    Y+KEIE MK +TR+EY+A L                  +HH + RW
Sbjct:   339 YWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRW 398

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
             +ARIGRV GNK LYLGT+GTQEEAA AYD+AAI+ RG NAVTNFDI+ Y
Sbjct:   399 QARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRY 447

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 109/198 (55%), Positives = 136/198 (68%)

Query:    41 FNNVNQQVEQQA--DQXXXXXXXXXXXXVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPT 98
             +NN +  V+++   D              +R+S YRGV+RHRWTGRYEAHLWD       
Sbjct:   177 YNNNDDVVQEKTIVDVVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREG 236

Query:    99 QRKKGKQ---GAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKTVTREEYL 155
             Q +KG+Q   G YD+EE AARAYDLAALKYWGT+T TNFP+SEYEKE+E MK +TR+EY+
Sbjct:   237 QTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYV 296

Query:   156 ATLXXXXXXXXXXXX------KHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIA 209
             A+L                  +HH + RW+ARIGRV GNK LYLGT+GTQEEAA AYDIA
Sbjct:   297 ASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIA 356

Query:   210 AIEHRGINAVTNFDISTY 227
             AI+ RG++AVTNFD++ Y
Sbjct:   357 AIKFRGLSAVTNFDMNRY 374

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 112/215 (52%), Positives = 140/215 (65%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+E+ AARAYDLAALK
Sbjct:   199 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALK 258

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG +T TNFP+S YE E+E MK +TR+E++A+L                  +HH + RW
Sbjct:   259 YWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRW 318

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY-IRWLKPA--- 234
             +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI+ RG+NAVTNFDIS Y ++ +      
Sbjct:   319 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASCNLP 378

Query:   235 AGG--NSHNPAFQEPKPILEYSPPTSSLLSNHILT 267
              GG     +PA       ++ SP  S  L+   LT
Sbjct:   379 VGGLMPKPSPATAAADKTVDLSPSDSPSLTTPSLT 413

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 100/169 (59%), Positives = 124/169 (73%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+EE AARAYDLAALK
Sbjct:   186 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALK 245

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG ST TNFP++ YEKE+E MK +TR+E++A++                  +HH + RW
Sbjct:   246 YWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRW 305

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
             +ARIGRV GNK LYLGT+ T+EEAA AYDIAAI+ RG+NAVTNF+I+ Y
Sbjct:   306 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 100/169 (59%), Positives = 121/169 (71%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S+YRGV+RHRWTGRYEAHLWD       Q ++G+Q   G YDEEE AARAYDLAALK
Sbjct:   219 QRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALK 278

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG +T  NFP+S YEKEIE +  + R+E++A L                  +HH + RW
Sbjct:   279 YWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRW 338

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
             +ARIGRV GNK LYLGT+ TQEEAA AYDIAAI+ RG+NAVTNFDI+ Y
Sbjct:   339 QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRY 387

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 98/169 (57%), Positives = 123/169 (72%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+E+ AAR+YDLAALK
Sbjct:   177 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALK 236

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG ST TNFP++ YEKE+E MK +TR+E++A +                  +HH + RW
Sbjct:   237 YWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRW 296

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTY 227
             +ARIGRV GNK LYLGT+ T+EEAA AYDIAAI+ RG+NAVTNF+I+ Y
Sbjct:   297 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 115/229 (50%), Positives = 145/229 (63%)

Query:    68 KRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALK 124
             +R+S YRGV+RHRWTGRYEAHLWD       Q +KG+Q   G YD+E+ AARAYDLAALK
Sbjct:   227 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALK 286

Query:   125 YWGTSTFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXX------KHHHNRRW 178
             YWG++  TNFPVS Y KE+E M  +T++E++A+L                  +HH   RW
Sbjct:   287 YWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRW 346

Query:   179 EARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGN 238
             +ARIGRV GNK LYLGT+ T+EEAA AYDIAAI+ RGINAVTNF+++ Y       A  N
Sbjct:   347 QARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRY----DIEAVMN 402

Query:   239 SHNP----AFQEPKPILEYSPPTSSLLSNHILTEGHQITDISIFNDSNP 283
             S  P    A +  K  L    P+SS  S+H L +  Q+   S  +D NP
Sbjct:   403 SSLPVGGAAAKRHKLKLALESPSSSS-SDHNLQQ-QQLLPSSSPSDQNP 449

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 74/179 (41%), Positives = 104/179 (58%)

Query:    69 RSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGT 128
             RSS+YRGV+ +R TGR+E+H+WD G       K+   G +D   +AARAYD AA+K+ G 
Sbjct:   128 RSSQYRGVTFYRRTGRWESHIWDCG-------KQVYLGGFDTAHAAARAYDRAAIKFRGV 180

Query:   129 STFTNFPVSEYEKEIEIMKTVTREEYLATLXXXXXXXXXXXXKH-----HHNRRWEARIG 183
                 NF + +Y+ +++ M  +T+EE++  L            K+     H   RWEAR+G
Sbjct:   181 EADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMG 240

Query:   184 RVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNP 242
             +  G KY+YLG + T+ EAA AYD AAI+  G +AVTNFD S Y   L   + GN   P
Sbjct:   241 QFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESSGNPTTP 299

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6X5Y6	WRI1_ARATH	No assigned EC number	0.7329	0.4093	0.3883	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020889001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (412 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-19
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-19
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-18
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-17
pfam00847	53	pfam00847, AP2, AP2 domain	4e-09
pfam00847	53	pfam00847, AP2, AP2 domain	2e-08

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 72  KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTF 131
           KYRGV +  W G++ A + D     P++ K+   G +D  E AARAYD AA K+ G S  
Sbjct: 1   KYRGVRQRPW-GKWVAEIRD-----PSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSAR 54

Query: 132 TNFPVSEYEK 141
            NFP S Y+ 
Sbjct: 55  LNFPNSLYDS 64

Length = 64

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 167 RGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDIST 226
           RGV +     +W A I      K ++LGT+ T EEAA AYD AA + RG +A  NF  S 
Sbjct: 3   RGVRQRP-WGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 227 Y 227
           Y
Sbjct: 62  Y 62

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 167 RGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDIS 225
           RGV +     +W A I    G + ++LGT+ T EEAA AYD AA++ RG +AV NF  S
Sbjct: 4   RGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 71  SKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTST 130
           SKYRGV +  W G++ A + D     P+  ++   G +D  E AARAYD AALK  G+S 
Sbjct: 1   SKYRGVRQRPW-GKWVAEIRD-----PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSA 54

Query: 131 FTNFPVS 137
             NFP S
Sbjct: 55  VLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 163 SGFSRGVSKHHHNRRWEARIGRV--FGNKYLYLGTYGTQEEAAHAYDIAAIEHRG 215
           SG+ +GV       RW A I        K   LGT+GT EEAA A   A ++ RG
Sbjct: 1   SGY-KGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 71  SKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWG 127
           S Y+GV   +  GR+ A + D G     +   G    +  EE AARA   A LK  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGT---FGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.75
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.74
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.61
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.59
PHA00280	121	putative NHN endonuclease	99.32
PHA00280	121	putative NHN endonuclease	99.31
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.98
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.75

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.75  E-value=2.3e-18  Score=132.53  Aligned_cols=61  Identities=48%  Similarity=0.752  Sum_probs=57.3

Q ss_pred             CCeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCCCcccCCCcc
Q 043551           71 SKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVS  137 (408)
Q Consensus        71 S~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~~a~~NFP~~  137 (408)
                      |+|+||+++++ |||+|+|+.+.     ++++++||+|+|+||||+|||.++++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~~~-----~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRDPS-----GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEeCC-----CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999998 99999999974     489999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.74  E-value=2.9e-18  Score=133.50  Aligned_cols=63  Identities=46%  Similarity=0.773  Sum_probs=59.1

Q ss_pred             CeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCCCcccCCCcchhh
Q 043551           72 KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVSEYE  140 (408)
Q Consensus        72 ~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~~a~~NFP~~dy~  140 (408)
                      +|+||+++++ |||+|+|+++.     .+++++||+|+|+||||+|||.++++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~~~~-gkw~A~I~~~~-----~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPW-GKWVAEIRDPS-----KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCC-CeEEEEEEecC-----CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5999999888 99999999964     488999999999999999999999999999999999999986

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.61  E-value=7e-16  Score=120.06  Aligned_cols=62  Identities=44%  Similarity=0.566  Sum_probs=57.6

Q ss_pred             ccCceeccCCCcceeeeccccCCcccccccCCCHHHHHhhhHHHHHHhcCCcccCCCCccccc
Q 043551          166 SRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYI  228 (408)
Q Consensus       166 yRGVs~~~~~GkW~A~I~~~~~~k~i~LGtF~TeEEAA~AYD~Aa~~l~G~~A~tNFp~~~Y~  228 (408)
                      |+||+++ ++|||+|+|+...+++.++||+|+|+||||.|||.++++++|.++.+|||+++|.
T Consensus         2 ~kGV~~~-~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        2 YRGVRQR-PWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             EeeEEeC-CCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            7999975 6799999997655899999999999999999999999999999999999999985

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.59  E-value=1.6e-15  Score=116.61  Aligned_cols=61  Identities=44%  Similarity=0.617  Sum_probs=54.3

Q ss_pred             CcccCceeccCCCcceeeeccccCCcccccccCCCHHHHHhhhHHHHHHhcCCcccCCCCcc
Q 043551          164 GFSRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDIS  225 (408)
Q Consensus       164 g~yRGVs~~~~~GkW~A~I~~~~~~k~i~LGtF~TeEEAA~AYD~Aa~~l~G~~A~tNFp~~  225 (408)
                      +.|+||++++ +|||+|+|+....++.++||+|+|+||||.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            3589999875 599999997544489999999999999999999999999999999999863

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.32  E-value=2.5e-12  Score=112.55  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             hcccCCCCCCCeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCCCcc
Q 043551           62 AAATTVKRSSKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTF  131 (408)
Q Consensus        62 ~~~~~~~~sS~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~~a~  131 (408)
                      +....++++|+|+||+|++..|||+|+|+..       ||+++||.|+++|+|+.||+ ++.+++|++|.
T Consensus        58 N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~-------gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         58 NMKTPKSNTSGLKGLSWSKEREMWRGTVTAE-------GKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             ccCCCCCCCCCCCeeEEecCCCeEEEEEEEC-------CEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4556788999999999999999999999986       89999999999999999997 78899998775

>PHA00280 putative NHN endonuclease

Probab=99.31  E-value=2.3e-12  Score=112.76  Aligned_cols=101  Identities=13%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             HHHHHHhHhhcCCCc---ccCCCc-chhhHHHHHhhhhhhhhhhhhh--hccCCCcccCceeccCCCcceeeeccccCCc
Q 043551          116 RAYDLAALKYWGTST---FTNFPV-SEYEKEIEIMKTVTREEYLATL--RRRSSGFSRGVSKHHHNRRWEARIGRVFGNK  189 (408)
Q Consensus       116 rAYD~AA~~~~G~~a---~~NFP~-~dy~~EI~eL~~vSkeE~va~l--Rrkssg~yRGVs~~~~~GkW~A~I~~~~~~k  189 (408)
                      +++-.+...++|+--   ...+.. ......+.+|+.++..|+....  ++.++++++||+|++..|||+|+|.  +++|
T Consensus        13 ~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK   90 (121)
T PHA00280         13 RRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGK   90 (121)
T ss_pred             hHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCE
Confidence            455566667777632   122221 1234689999999999997754  4567788999999999999999994  7899


Q ss_pred             ccccccCCCHHHHHhhhHHHHHHhcCCccc
Q 043551          190 YLYLGTYGTQEEAAHAYDIAAIEHRGINAV  219 (408)
Q Consensus       190 ~i~LGtF~TeEEAA~AYD~Aa~~l~G~~A~  219 (408)
                      .++||.|+++|+|+.||+ ++.+++|++|.
T Consensus        91 ~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         91 QHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             EEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            999999999999999997 77899998874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.98  E-value=5e-10  Score=84.21  Aligned_cols=56  Identities=34%  Similarity=0.384  Sum_probs=47.6

Q ss_pred             CCeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCC
Q 043551           71 SKYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGT  128 (408)
Q Consensus        71 S~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~  128 (408)
                      |+|+||++++..++|+|+|++... +. +++..+||.|+++++|++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~-~g-~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSE-NG-KRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCC-TT-EEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEccc-Cc-ccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999998421 11 248899999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.75  E-value=9.7e-09  Score=77.18  Aligned_cols=53  Identities=32%  Similarity=0.350  Sum_probs=45.9

Q ss_pred             CcccCceeccCCCcceeeecccc-C--CcccccccCCCHHHHHhhhHHHHHHhcCC
Q 043551          164 GFSRGVSKHHHNRRWEARIGRVF-G--NKYLYLGTYGTQEEAAHAYDIAAIEHRGI  216 (408)
Q Consensus       164 g~yRGVs~~~~~GkW~A~I~~~~-~--~k~i~LGtF~TeEEAA~AYD~Aa~~l~G~  216 (408)
                      ++++||++++..++|+|+|+... +  +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            35899999999999999997521 1  49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-10
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 72  KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQ---GAYDEEESAARAYDLAALKYWGT 128
            YRGV +  W G++ A + D     P   K G +   G ++  E AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRD-----PA--KNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 129 STFTNFPV 136
               NFP+
Sbjct: 54  RALLNFPL 61

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 167 RGVSKHHHNRRWEARIGRVFGNKY-LYLGTYGTQEEAAHAYDIAAIEHRGINAVTNF 222
           RGV +    + + A I     N   ++LGT+ T E+AA AYD AA   RG  A+ NF
Sbjct: 4   RGVRQRPWGK-FAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 46/351 (13%), Positives = 92/351 (26%), Gaps = 89/351 (25%)

Query: 100 RKKGKQGAYD-EEESAARAYDLAALKYWGTSTFTNFPVSEYEKEIEIMKT---------V 149
             K ++      EE     Y              +     Y ++ + +           V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 150 TREEYLATLR------RRSSGFS----RGVSKHHHNRRWEA-------RIGRVFGNK--Y 190
           +R +    LR      R +         G  K      W A       ++      K  +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFW 186

Query: 191 LYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDISTYIRWLKPAAGGNSHNPAFQEPKPI 250
           L L    + E       +  ++      +   D +   R    +      +    E + +
Sbjct: 187 LNLKNCNSPET-----VLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 251 LEYSPPTSSLL-------SNH-----------ILTEGHQITDISIFNDSNPFPLQDQDI- 291
           L+  P  + LL       +             + T   Q+TD      +    L    + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 292 --PKKQDSFQANI----KSSLPFSPCTKSSSSSPTALSLLLRSSVFKELVEKNPN---NS 342
             P +  S            LP    T    ++P  LS+        E +        N 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT----TNPRRLSI------IAESIRDGLATWDNW 347

Query: 343 AEVNIEENDTKNGPKIGSKNEVE-ETLYDEFVI---NNPVQYICPSSKICV 389
             VN ++  T     +      E   ++D   +   +  +    P+  + +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.84
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.71
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	91.95
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	89.28

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.84  E-value=4.6e-22  Score=154.08  Aligned_cols=61  Identities=34%  Similarity=0.690  Sum_probs=56.5

Q ss_pred             CeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCCCcccCCCcc
Q 043551           72 KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVS  137 (408)
Q Consensus        72 ~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~~a~~NFP~~  137 (408)
                      +||||++++| |||+|+|+++..    +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~~~----~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDPAK----NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETTT----TSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEccccC----CCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999998 999999999742    368999999999999999999999999999999999974

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.71  E-value=3.3e-18  Score=132.41  Aligned_cols=60  Identities=37%  Similarity=0.516  Sum_probs=54.5

Q ss_pred             cccCceeccCCCcceeeecccc-CCcccccccCCCHHHHHhhhHHHHHHhcCCcccCCCCcc
Q 043551          165 FSRGVSKHHHNRRWEARIGRVF-GNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDIS  225 (408)
Q Consensus       165 ~yRGVs~~~~~GkW~A~I~~~~-~~k~i~LGtF~TeEEAA~AYD~Aa~~l~G~~A~tNFp~~  225 (408)
                      .|+||+++ ++|||+|+|+... +++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            48999986 6899999998654 468999999999999999999999999999999999864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=91.95  E-value=0.016  Score=51.83  Aligned_cols=64  Identities=11%  Similarity=0.004  Sum_probs=46.3

Q ss_pred             hHHHHHhhhhhhhhhhhhhhccC-CCcccCceeccCCCcceeeeccccCCcccccccCCCHHHHHhhhH
Q 043551          140 EKEIEIMKTVTREEYLATLRRRS-SGFSRGVSKHHHNRRWEARIGRVFGNKYLYLGTYGTQEEAAHAYD  207 (408)
Q Consensus       140 ~~EI~eL~~vSkeE~va~lRrks-sg~yRGVs~~~~~GkW~A~I~~~~~~k~i~LGtF~TeEEAA~AYD  207 (408)
                      ...+.+|+-+|..|+........ .+.++||.+ ...++|.+.|.  ++ +..+||.|.|.+|||++|.
T Consensus        82 nn~~~NL~~~t~~eN~~~~~~~~~~~~~~g~~~-~~~~k~~~vi~--~~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           82 NNLSTNLRWVTQKINVENQMSRGTLNVSKAQQI-AKIKNQKPIIV--IS-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CCCGGGEEEECHHHHHHHHHHHTCCCCHHHHHH-HHHHTCCCEEE--EC-TTSCEEEESCHHHHHHHHT
T ss_pred             CCCHHHcEECCHHHHhhcccccCcccceeeeee-ccCCCCceEEE--Ec-CCceEEeeCCHHHHHHHHC
Confidence            35788899999999876433222 222467766 45677999994  45 6788999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=89.28  E-value=0.065  Score=42.58  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             CCCCCeEEeeEcCCCCceEEEEecC
Q 043551           68 KRSSKYRGVSRHRWTGRYEAHLWDK   92 (408)
Q Consensus        68 ~~sS~yrGV~~~~~~gkW~A~I~~~   92 (408)
                      ..+|+|.||+|++..+.|.|+-.++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            4679999999999999999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-18
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-16

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.9 bits (187), Expect = 3e-18
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 72  KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTF 131
            YRGV +  W G++ A + D          +   G ++  E AA AYD AA +  G+   
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPA----KNGARVWLGTFETAEDAALAYDRAAFRMRGSRAL 56

Query: 132 TNFPV 136
            NFP+
Sbjct: 57  LNFPL 61

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.1 bits (172), Expect = 4e-16
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 167 RGVSKHHHNRRWEARIGRVFGN-KYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNF 222
           RGV +    + + A I     N   ++LGT+ T E+AA AYD AA   RG  A+ NF
Sbjct: 4   RGVRQRPWGK-FAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.86
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.74

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=5.1e-23  Score=157.72  Aligned_cols=61  Identities=34%  Similarity=0.690  Sum_probs=56.3

Q ss_pred             CeEEeeEcCCCCceEEEEecCCCCCCCCCcccccCCCCCHHHHHHHHHHHhHhhcCCCcccCCCcc
Q 043551           72 KYRGVSRHRWTGRYEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPVS  137 (408)
Q Consensus        72 ~yrGV~~~~~~gkW~A~I~~~~~~~~~~~k~~~LGtF~teEeAArAYD~AA~~~~G~~a~~NFP~~  137 (408)
                      +||||+++++ |||+|+|+++..    +++++|||+|+|+||||+|||.||++++|+++.+|||.+
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~~~----~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDPAK----NGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEETTT----TSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecCCC----CCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999999987 999999998742    578899999999999999999999999999999999974

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=2.8e-19  Score=136.70  Aligned_cols=60  Identities=37%  Similarity=0.511  Sum_probs=54.1

Q ss_pred             cccCceeccCCCcceeeeccc-cCCcccccccCCCHHHHHhhhHHHHHHhcCCcccCCCCcc
Q 043551          165 FSRGVSKHHHNRRWEARIGRV-FGNKYLYLGTYGTQEEAAHAYDIAAIEHRGINAVTNFDIS  225 (408)
Q Consensus       165 ~yRGVs~~~~~GkW~A~I~~~-~~~k~i~LGtF~TeEEAA~AYD~Aa~~l~G~~A~tNFp~~  225 (408)
                      .||||+++ .+|||+|+|+.. .+++++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            38999986 679999999753 4668899999999999999999999999999999999974