Citrus Sinensis ID: 043692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
MRRGPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEKTL
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEccccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHcccccccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccEEEEEEEEcccccEEEEEEEcccccccEEccccccccccccEEccHHHHcccccccccccccHHHHHHHHHHcccccccc
mrrgptlpeldefpeIRRREALEWSQHMKQLGELLMGLLMKEmtfidgrmmignyypycpqpdltvgipchtnpGALAILLQdhhgglqcncgdnwvdvkpvpgalvvdigdvlkpksngynvdhralanssrEAQVSAVVFFRlgyrdrfpcptrqfampirllgpfpelispekparfrqFTHADYINRFYTKQLDEKTL
mrrgptlpeldefpeiRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRalanssreaqVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRfytkqldektl
MRRGPTLPELDEFPEIRRREALEWSQHmkqlgellmgllmkemTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEKTL
*********************LEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALAN**REAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTK*******
*****TLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQL*****
MRRGPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEKTL
***GPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRRGPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDGRMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNGYNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEKTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query202 2.2.26 [Sep-21-2011]
Q9LTH8364 1-aminocyclopropane-1-car yes no 0.905 0.502 0.391 3e-32
Q43383398 1-aminocyclopropane-1-car no no 0.925 0.469 0.377 4e-32
Q94A78351 1-aminocyclopropane-1-car no no 0.930 0.535 0.369 7e-31
P93824360 1-aminocyclopropane-1-car no no 0.910 0.511 0.376 7e-31
Q9LTH7366 1-aminocyclopropane-1-car no no 0.905 0.5 0.391 5e-30
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.920 0.463 0.359 5e-29
Q8H1S4369 1-aminocyclopropane-1-car no no 0.910 0.498 0.367 6e-29
Q9LSW6362 1-aminocyclopropane-1-car no no 0.920 0.513 0.361 1e-28
Q9LSW7365 1-aminocyclopropane-1-car no no 0.910 0.504 0.386 2e-28
Q84MB3365 1-aminocyclopropane-1-car no no 0.905 0.501 0.367 6e-28
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function desciption
 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 115/207 (55%), Gaps = 24/207 (11%)

Query: 4   GPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLL----------MKEMTFIDGRMMIG 53
            P  P  +E PE  R   +E+S+H+  LG+LL  LL          +K M  +   +MI 
Sbjct: 160 APDPPTPEELPETCRDAMIEYSKHVLSLGDLLFELLSEALGLKSEILKSMDCLKSLLMIC 219

Query: 54  NYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDV 113
           +YYP CPQPDLT+GI  H++   L +LLQD+ GGLQ    D+WVDV P+PGALVV++GD 
Sbjct: 220 HYYPPCPQPDLTLGISKHSDNSFLTVLLQDNIGGLQILHQDSWVDVSPLPGALVVNVGDF 279

Query: 114 LKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPEL 171
           L+  +N    +V+HR LAN +R  ++S   FF    R+              + GP  EL
Sbjct: 280 LQLITNDKFISVEHRVLAN-TRGPRISVASFFSSSIREN-----------STVYGPMKEL 327

Query: 172 ISPEKPARFRQFTHADYINRFYTKQLD 198
           +S E P ++R  T  +Y   ++ K LD
Sbjct: 328 VSEENPPKYRDTTLREYSEGYFKKGLD 354

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
224111448 371 predicted protein [Populus trichocarpa] 0.935 0.509 0.523 3e-55
255570053 361 Desacetoxyvindoline 4-hydroxylase, putat 0.935 0.523 0.532 4e-55
118489548 408 unknown [Populus trichocarpa x Populus d 0.935 0.463 0.518 8e-55
225424360 393 PREDICTED: 1-aminocyclopropane-1-carboxy 0.935 0.480 0.462 8e-48
449449240 396 PREDICTED: 1-aminocyclopropane-1-carboxy 0.920 0.469 0.492 9e-48
356502372 378 PREDICTED: 1-aminocyclopropane-1-carboxy 0.935 0.5 0.448 2e-45
255578973 369 Desacetoxyvindoline 4-hydroxylase, putat 0.935 0.512 0.454 6e-45
225440829 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.930 0.517 0.454 2e-44
297740139 423 unnamed protein product [Vitis vinifera] 0.930 0.444 0.454 2e-44
359481610 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.900 0.501 0.454 1e-43
>gi|224111448|ref|XP_002315859.1| predicted protein [Populus trichocarpa] gi|222864899|gb|EEF02030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/214 (52%), Positives = 142/214 (66%), Gaps = 25/214 (11%)

Query: 1   MRRGPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLL----------MKEMTFIDGRM 50
           M  GP LPEL+E PEI R E ++W+Q  KQLGELLM LL          +K++TF+D R 
Sbjct: 165 MTLGPNLPELEEIPEICRNELVDWNQCAKQLGELLMELLCEGLGLNAGKLKDLTFLDART 224

Query: 51  MIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDI 110
           M  +YYPYCPQPDLTVGI  HT+PG L +LLQD  GGLQ   G+ WVDVKPVPGA+V+++
Sbjct: 225 MAAHYYPYCPQPDLTVGIMSHTDPGVLTVLLQDQIGGLQVKHGEGWVDVKPVPGAIVINV 284

Query: 111 GDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPF 168
           GD+++  SN    + +HR LAN   E ++S  +FF    RD              L GPF
Sbjct: 285 GDIMQILSNDEYKSNEHRVLANGCHEPRISIAIFFNPLKRD-------------SLFGPF 331

Query: 169 PELISPEKPARFRQFTHADYINRFYTKQLDEKTL 202
           PELISPEKPA +R+F + DYI RF+TK+LD K+L
Sbjct: 332 PELISPEKPAVYREFIYTDYIKRFFTKELDGKSL 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570053|ref|XP_002525989.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223534721|gb|EEF36413.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118489548|gb|ABK96576.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|225424360|ref|XP_002284896.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449240|ref|XP_004142373.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] gi|449492729|ref|XP_004159083.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502372|ref|XP_003519993.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Glycine max] Back     alignment and taxonomy information
>gi|255578973|ref|XP_002530339.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223530143|gb|EEF32055.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440829|ref|XP_002282131.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740139|emb|CBI30321.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481610|ref|XP_003632647.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query202
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.698 0.354 0.423 4e-26
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.900 0.5 0.354 5.9e-25
TAIR|locus:2020818351 AT1G03400 [Arabidopsis thalian 0.698 0.401 0.415 7.6e-25
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.678 0.374 0.437 2e-24
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.678 0.375 0.423 4.2e-24
TAIR|locus:2018349360 AT1G04350 [Arabidopsis thalian 0.693 0.388 0.405 5.3e-24
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.693 0.379 0.405 8.7e-24
TAIR|locus:2176466362 AT5G43450 [Arabidopsis thalian 0.712 0.397 0.411 1.4e-23
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.683 0.381 0.388 2.3e-23
TAIR|locus:2176456365 AT5G43440 [Arabidopsis thalian 0.712 0.394 0.405 2.3e-23
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 66/156 (42%), Positives = 90/156 (57%)

Query:    50 MMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVD 109
             +M G YYP CPQPDLT+GI  HT+   + ILLQD+ GGLQ      WVDV PVPGALV++
Sbjct:   250 IMFGQYYPPCPQPDLTLGISKHTDFSFITILLQDNIGGLQVIHDQCWVDVSPVPGALVIN 309

Query:   110 IGDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPI-RLLG 166
             IGD+L+  SN    + +HR +AN S E ++S             PC    F  P  R+ G
Sbjct:   310 IGDLLQLISNDKFISAEHRVIANGSSEPRIS------------MPCFVSTFMKPNPRIYG 357

Query:   167 PFPELISPEKPARFRQFTHADYINRFYTKQLDEKTL 202
             P  EL+S + PA++R  T  ++ N F ++ +    L
Sbjct:   358 PIKELLSEQNPAKYRDLTITEFSNTFRSQTISHPAL 393
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020818 AT1G03400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176466 AT5G43450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176456 AT5G43440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-34
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-31
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-30
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-29
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-27
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-27
PLN02216357 PLN02216, PLN02216, protein SRG1 9e-27
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-25
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 7e-25
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 9e-24
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-23
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-23
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-20
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-18
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-18
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-17
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 9e-14
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-13
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-12
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-12
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-09
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 9e-09
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-08
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-07
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 8e-07
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-04
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  123 bits (310), Expect = 4e-34
 Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 32/202 (15%)

Query: 12  EFPEIRRREALEWSQHMKQLGELLMGLL----------MKEMTFIDGRMMIGNYYPYCPQ 61
            F EI       + + +++LG  L   +          +K +    G+ M  NYYP CP+
Sbjct: 147 SFKEIVST----YCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPE 202

Query: 62  PDLTVGIPCHTNPGALAILLQDHH-GGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNG 120
           P+LT G+P HT+P AL ILLQD    GLQ      WV V P PGA V++IGD L+  SNG
Sbjct: 203 PELTYGLPAHTDPNALTILLQDQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQALSNG 262

Query: 121 Y--NVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEKPA 178
              +V HRA+ N+ +E    A           F CP         ++ P  +L      A
Sbjct: 263 RYKSVWHRAVVNTDKERMSVA----------SFLCPCDD-----AVISPAKKLTDDGTAA 307

Query: 179 RFRQFTHADYINRFYTKQLDEK 200
            +R FT+A+Y  +F+++ LD++
Sbjct: 308 VYRDFTYAEYYKKFWSRNLDQE 329

Length = 337
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 202
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN02997325 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.64
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.54
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.98
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 91.15
TIGR02466201 conserved hypothetical protein. This family consis 90.86
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 87.35
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 86.07
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 84.13
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=1.1e-54  Score=367.71  Aligned_cols=180  Identities=29%  Similarity=0.510  Sum_probs=167.6

Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCC----------CceeEeeecCCCCCCCCccCCCCcCC
Q 043692            4 GPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFID----------GRMMIGNYYPYCPQPDLTVGIPCHTN   73 (202)
Q Consensus         4 ~pn~~wP~~~p~~fr~~~~~y~~~~~~la~~ll~~l~~~l~~~~----------~~~~rl~~YP~~~~~~~~~g~~~HtD   73 (202)
                      .|| .||++ |++||+++++|+++|.+|+.+|+++++++||+++          .+.+|++|||+|++++..+|+++|||
T Consensus        63 ~~n-~wP~~-~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD  140 (262)
T PLN03001         63 NPS-HWPDF-PPDYREVVGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSD  140 (262)
T ss_pred             chh-hCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcC
Confidence            467 89986 5679999999999999999999999999999873          24689999999999888999999999


Q ss_pred             CCceeEEeeCCCCccEEeeCCceeeeccCCCcEEEeecccccccCCC--CCccceEeeCCCCCCeeEEEEeeecCCCCCC
Q 043692           74 PGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRF  151 (202)
Q Consensus        74 ~g~lTlL~qd~~~GLqv~~~g~Wv~V~p~~~~~vVniGd~le~~Tng--ks~~HRV~~~~~~~~R~S~~~F~~p~~d~~~  151 (202)
                      +|+||||+||+++||||+++|+|++|+|.+|++||||||+||+||||  ||++|||+.+.. .+|||++||+.|+.|   
T Consensus       141 ~g~lTlL~qd~v~GLqV~~~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~-~~R~Sia~F~~p~~d---  216 (262)
T PLN03001        141 FGAITLLIQDDVEGLQLLKDAEWLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANAN-KARLSVATFHDPAKT---  216 (262)
T ss_pred             CCeeEEEEeCCCCceEEeeCCeEEECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCC-CCEEEEEEEEcCCCC---
Confidence            99999999999999999999999999999999999999999999999  999999998876 789999999999984   


Q ss_pred             CCCCcccCCCceeecCCCccCCCCCCCCCCCccHHHHHHHHHhcccCCC
Q 043692          152 PCPTRQFAMPIRLLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEK  200 (202)
Q Consensus       152 ~~~~~~~~~~~~~i~pl~~~~~~~~p~~y~~~~~~ey~~~~~~~~~~g~  200 (202)
                                 ++|+|+++++++++|++|++++++||+..++++..+++
T Consensus       217 -----------~~i~p~~e~v~~~~p~~y~~~~~~e~l~~~~~~~~~~~  254 (262)
T PLN03001        217 -----------AKIAPASALSTESFPPRYCEIVYGEYVSSWYSKGPEGK  254 (262)
T ss_pred             -----------CEEeCChHhcCCCCCCcCCCccHHHHHHHHHHhccCCc
Confidence                       69999999999999999999999999999998776654

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-17
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-17
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-16
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-10
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 9e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 17/152 (11%)
Query: 51  MIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDI 110
           M  NYYP CPQP+L +G+  HT+  AL  +L +   GLQ      WV  K VP ++V+ I
Sbjct: 212 MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHI 271
Query: 111 GDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPF 168
           GD L+  SNG   ++ HR L N  +  ++S  VF     +D+             +L P 
Sbjct: 272 GDTLEILSNGKYKSILHRGLVNKEK-VRISWAVFCE-PPKDKI------------VLKPL 317
Query: 169 PELISPEKPARFRQFTHADYI-NRFYTKQLDE 199
           PE++S E PA+F   T A +I ++ + K+ +E
Sbjct: 318 PEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query202
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 5e-52
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-51
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 9e-27
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 3e-25
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-22
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 6e-21
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  169 bits (431), Expect = 5e-52
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 30/204 (14%)

Query: 12  EFPEIRRREALEWSQHMKQLGELLMGLL-----------MKEMTFIDG--RMMIGNYYPY 58
           + P        E+++ ++ L   +   L            KE+  ++     M  NYYP 
Sbjct: 160 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK 219

Query: 59  CPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKS 118
           CPQP+L +G+  HT+  AL  +L +   GLQ      WV  K VP ++V+ IGD L+  S
Sbjct: 220 CPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILS 279

Query: 119 NG-Y-NVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLGPFPELISPEK 176
           NG Y ++ HR L N  +  ++S  VF         P   +       +L P PE++S E 
Sbjct: 280 NGKYKSILHRGLVNKEKV-RISWAVFC-------EPPKDK------IVLKPLPEMVSVES 325

Query: 177 PARFRQFTHADYI-NRFYTKQLDE 199
           PA+F   T A +I ++ + K+ +E
Sbjct: 326 PAKFPPRTFAQHIEHKLFGKEQEE 349
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.72
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.04
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 90.79
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 90.27
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 90.23
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 89.66
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 88.18
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 85.13
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 82.78
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.9e-54  Score=376.27  Aligned_cols=181  Identities=30%  Similarity=0.437  Sum_probs=169.6

Q ss_pred             CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCC-------------CceeEeeecCCCCCCCCccCCCC
Q 043692            4 GPTLPELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFID-------------GRMMIGNYYPYCPQPDLTVGIPC   70 (202)
Q Consensus         4 ~pn~~wP~~~p~~fr~~~~~y~~~~~~la~~ll~~l~~~l~~~~-------------~~~~rl~~YP~~~~~~~~~g~~~   70 (202)
                      ++| .||+..| +||+++++|+++|.+|+.+||++|+++||+++             .+.+|++|||+|++++..+|+++
T Consensus       154 ~~~-~wP~~~~-~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~  231 (356)
T 1gp6_A          154 DLS-IWPKTPS-DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEA  231 (356)
T ss_dssp             CGG-GSCCSST-THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEE
T ss_pred             ccc-cCCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCC
Confidence            567 8998755 69999999999999999999999999999874             24689999999999988999999


Q ss_pred             cCCCCceeEEeeCCCCccEEeeCCceeeeccCCCcEEEeecccccccCCC--CCccceEeeCCCCCCeeEEEEeeecCCC
Q 043692           71 HTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYR  148 (202)
Q Consensus        71 HtD~g~lTlL~qd~~~GLqv~~~g~Wv~V~p~~~~~vVniGd~le~~Tng--ks~~HRV~~~~~~~~R~S~~~F~~p~~d  148 (202)
                      |||+|+||||+||+++||||+++|+|++|+|++|++||||||+||+||||  ||+.|||+.++. .+|||++||++|+. 
T Consensus       232 HtD~g~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~-~~R~Sia~F~~P~~-  309 (356)
T 1gp6_A          232 HTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPK-  309 (356)
T ss_dssp             ECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSS-CCEEEEEEEEECCT-
T ss_pred             ccCCCeEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCC-CCEEEEEEeecCCC-
Confidence            99999999999999999999999999999999999999999999999999  999999999877 89999999999998 


Q ss_pred             CCCCCCCcccCCCce-eecCCCccCCCCCCCCCCCccHHHHHHHHHhcccCCCC
Q 043692          149 DRFPCPTRQFAMPIR-LLGPFPELISPEKPARFRQFTHADYINRFYTKQLDEKT  201 (202)
Q Consensus       149 ~~~~~~~~~~~~~~~-~i~pl~~~~~~~~p~~y~~~~~~ey~~~~~~~~~~g~~  201 (202)
                                   ++ +|+|+++++++++|++|++++++||+..+++.+++||.
T Consensus       310 -------------d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          310 -------------DKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             -------------TTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             -------------CCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence                         57 99999999999999999999999999999998888764
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 202
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 3e-20
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-15
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-12
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-06
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.6 bits (208), Expect = 3e-20
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 17/154 (11%)

Query: 49  RMMIGNYYPYCPQPDLTVGIPCHTNPGALAILLQDHHGGLQCNCGDNWVDVKPVPGALVV 108
             M  NYYP CPQP+L +G+  HT+  AL  +L +   GLQ      WV  K VP ++V+
Sbjct: 209 LQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVM 268

Query: 109 DIGDVLKPKSNGY--NVDHRALANSSREAQVSAVVFFRLGYRDRFPCPTRQFAMPIRLLG 166
            IGD L+  SNG   ++ HR L N  +  ++S  VF                     +L 
Sbjct: 269 HIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVFCEPPKDK-------------IVLK 314

Query: 167 PFPELISPEKPARFRQFTHADYI-NRFYTKQLDE 199
           P PE++S E PA+F   T A +I ++ + K+ +E
Sbjct: 315 PLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query202
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.25
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 91.99
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.8e-51  Score=350.83  Aligned_cols=177  Identities=30%  Similarity=0.539  Sum_probs=160.1

Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCCCC-------------ceeEeeecCCCCCCCCccCCCCcCCC
Q 043692            8 PELDEFPEIRRREALEWSQHMKQLGELLMGLLMKEMTFIDG-------------RMMIGNYYPYCPQPDLTVGIPCHTNP   74 (202)
Q Consensus         8 ~wP~~~p~~fr~~~~~y~~~~~~la~~ll~~l~~~l~~~~~-------------~~~rl~~YP~~~~~~~~~g~~~HtD~   74 (202)
                      .||+. |++||+++++|+++|.+|+.+|+++++++||++++             +.+|++|||++++++...|+++|||+
T Consensus       101 ~~~~~-~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~  179 (307)
T d1w9ya1         101 EVPDL-DEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDA  179 (307)
T ss_dssp             GCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCS
T ss_pred             cCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCccccccccccccccc
Confidence            67775 55799999999999999999999999999998742             45799999999999889999999999


Q ss_pred             CceeEEeeC-CCCccEEeeCCceeeeccCCCcEEEeecccccccCCC--CCccceEeeCCCCCCeeEEEEeeecCCCCCC
Q 043692           75 GALAILLQD-HHGGLQCNCGDNWVDVKPVPGALVVDIGDVLKPKSNG--YNVDHRALANSSREAQVSAVVFFRLGYRDRF  151 (202)
Q Consensus        75 g~lTlL~qd-~~~GLqv~~~g~Wv~V~p~~~~~vVniGd~le~~Tng--ks~~HRV~~~~~~~~R~S~~~F~~p~~d~~~  151 (202)
                      |+||||+|+ .++||||.++|+|++|+|.+|++|||+||+||+||||  |||.|||+.++. .+|||++||++|+.|   
T Consensus       180 ~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~-~~R~Si~~F~~p~~d---  255 (307)
T d1w9ya1         180 GGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKD-GARMSLASFYNPGSD---  255 (307)
T ss_dssp             SSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSS-SCCEEEEEEEECCTT---
T ss_pred             ceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCC-CCcEEEEEEeeCCCC---
Confidence            999999996 5799999999999999999999999999999999999  999999998887 899999999999985   


Q ss_pred             CCCCcccCCCceeecCCCccCC---CCCCCCCCCccHHHHHHHHHhcccCCC
Q 043692          152 PCPTRQFAMPIRLLGPFPELIS---PEKPARFRQFTHADYINRFYTKQLDEK  200 (202)
Q Consensus       152 ~~~~~~~~~~~~~i~pl~~~~~---~~~p~~y~~~~~~ey~~~~~~~~~~g~  200 (202)
                                 ++|+|+++|++   +++|++|++||++||++.+++.++++|
T Consensus       256 -----------~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~  296 (307)
T d1w9ya1         256 -----------AVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAK  296 (307)
T ss_dssp             -----------CEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSH
T ss_pred             -----------CEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcc
Confidence                       69999999996   567999999999999999999998876
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure