Citrus Sinensis ID: 043725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIASKTIW
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msvgfgkcskIRHIVRLRQMLRRWRNKARMsaaripsdvpagYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEeygftnqgplaipcdeSLFEEAIRFISrsesghsarfvnfedfqryCHVGFKKnidfwtesrpllhgiasktiw
Flexible Loop (DISEMBL)
msvgfgkcskirhiVRLRQMLRRWRNKARmsaaripsdvpagYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDfwtesrpllhgiasktiw
Low Complexity Region (SEG)
MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIASKTIW
Disordered region (IsUnstruct)
****FGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIA*****
Disordered Region (DISOPRED)
**************VRLRQ***********************YVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFI*************FEDFQRYC**********WTESRPLLHGIA***IW
Disordered Region (DISEMBL)
MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIASKTIW
Disordered Region (DISPRO)
*******CSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISR*******RFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIASKT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCHVGFKKNIDFWTESRPLLHGIASKTIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.513	0.855	0.469	2e-12
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.506	0.826	0.454	2e-12
P33081	82	Auxin-induced protein 15A	no	no	0.4	0.731	0.508	2e-11
P33079	93	Auxin-induced protein 10A	no	no	0.386	0.623	0.542	2e-11
P33082	82	Auxin-induced protein X15	no	no	0.393	0.719	0.5	3e-11
P33080	92	Auxin-induced protein X10	no	no	0.386	0.630	0.508	2e-10

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 27  KARMSAARIPS---DVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN- 82
           KA  SA +  S   DV  GY+AV VG   RRFV+  +YLN P F+ LL QAEEE+G+ + 
Sbjct: 10  KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHP 69

Query: 83  QGPLAIPCDESLFEEAIRFIS 103
            G L IPC E +F+    F++
Sbjct: 70  NGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 28  ARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPL 86
           AR  A+    D P GY+AV VG + +RFV+  ++LN P+F+ LL QAEEE+G+ +  G L
Sbjct: 14  ARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGL 73

Query: 87  AIPCDESLFEEAIRFIS 103
            IPC E LF+     +S
Sbjct: 74  TIPCSEDLFQHITSCLS 90

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 37 SDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLF 95
          +D P GY+AV VG   +RFV+  +YLN P F+ LL QAEEE+G+ +  G L IPC E +F
Sbjct: 15 ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 74

Query: 96 E 96
          +
Sbjct: 75 Q 75

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 38 DVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLF 95
          DVP GY AV VG   RRF +  +YLN P F++LL QAEEE+G+ +  G L IPC E  F
Sbjct: 25 DVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 38 DVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLFE 96
          D P GY+AV VG   +RFV+  +Y+N P F+ LL QAEEE+G+ +  G L IPC E +F+
Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 38 DVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLF 95
          +VP GY+ V VG   RRF++  +YLN P F+ LL QAEEE+G+ +  G L IPC E  F
Sbjct: 24 EVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
449460201	150	PREDICTED: auxin-induced protein 6B-like	1.0	1.0	0.833	3e-70
255538892	151	Auxin-induced protein 6B, putative [Rici	1.0	0.993	0.814	9e-69
224082982	149	SAUR family protein [Populus trichocarpa	0.986	0.993	0.801	2e-66
224065947	149	SAUR family protein [Populus trichocarpa	0.973	0.979	0.802	3e-64
225458032	151	PREDICTED: auxin-induced protein 6B-like	0.98	0.973	0.785	5e-64
147790039	200	hypothetical protein VITISV_000524 [Viti	1.0	0.75	0.762	4e-63
356562397	151	PREDICTED: auxin-induced protein 6B-like	0.966	0.960	0.765	4e-60
356552069	151	PREDICTED: auxin-induced protein 6B-like	0.966	0.960	0.758	6e-60
18410889	154	SAUR-like auxin-responsive protein [Arab	1.0	0.974	0.688	6e-53
21592934	154	auxin-induced protein, putative [Arabido	1.0	0.974	0.681	4e-52

>gi|449460201|ref|XP_004147834.1| PREDICTED: auxin-induced protein 6B-like [Cucumis sativus] gi|449519840|ref|XP_004166942.1| PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/150 (83%), Positives = 134/150 (89%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRAT 60
           MS G GKCSKIRHIVRLRQMLRRWRNKARMSA RIPSDVPAG+VAVCVGTS RRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRAT 60

Query: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQ 120
           YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDES+FEE IRFISRSES +S RFV  +DFQ
Sbjct: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQ 120

Query: 121 RYCHVGFKKNIDFWTESRPLLHGIASKTIW 150
            YCH+G +  +D W ESRPLLHG+A K+IW
Sbjct: 121 SYCHIGIRTGLDLWPESRPLLHGLAEKSIW 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538892|ref|XP_002510511.1| Auxin-induced protein 6B, putative [Ricinus communis] gi|223551212|gb|EEF52698.1| Auxin-induced protein 6B, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 137/151 (90%), Gaps = 1/151 (0%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRAT 60
           MSV  GKCSKIRHIVRLRQMLRRWRNKAR+SA RIPSDVPAG+VAVCVG+SCRRFVVRAT
Sbjct: 1   MSVMMGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGSSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQ 120
           YLNHPVFKKLL+QAEEEYGF+NQGPL IPCDE++FEE I +ISRSESG+S R  N EDFQ
Sbjct: 61  YLNHPVFKKLLMQAEEEYGFSNQGPLVIPCDETVFEEVINYISRSESGNSTRLFNLEDFQ 120

Query: 121 RYCHVGFKKN-IDFWTESRPLLHGIASKTIW 150
           RYCHVG + + +DFWTESRPLL+G+A KTIW
Sbjct: 121 RYCHVGVRSSKLDFWTESRPLLNGLADKTIW 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082982|ref|XP_002306917.1| SAUR family protein [Populus trichocarpa] gi|222856366|gb|EEE93913.1| SAUR family protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/151 (80%), Positives = 133/151 (88%), Gaps = 3/151 (1%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRAT 60
           M+ G  KC+KIRHIVRLRQMLRRWRNKARMSA RIPSDVPAG+VAVCVGTSCRRFVVRAT
Sbjct: 1   MAAGQAKCTKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQ 120
           YLNHP+FKKLLVQAEEE+GF+NQGPL IPCDE++FEE IR+ISRSE+G S RFVN ED Q
Sbjct: 61  YLNHPIFKKLLVQAEEEFGFSNQGPLVIPCDEAVFEEVIRYISRSENGKSGRFVNLEDLQ 120

Query: 121 RYCHVGFKK-NIDFWTESRPLLHGIASKTIW 150
           RYCHVG K   +DFWT+SRPLLH  A KT W
Sbjct: 121 RYCHVGVKNAKLDFWTDSRPLLH--ADKTFW 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065947|ref|XP_002301987.1| SAUR family protein [Populus trichocarpa] gi|118481077|gb|ABK92492.1| unknown [Populus trichocarpa] gi|222843713|gb|EEE81260.1| SAUR family protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 127/147 (86%), Gaps = 1/147 (0%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRAT 60
           MS G  KC+KIRHIVRLRQMLRRWRNKARMSA RIPSDVPAG+VAVCVGT CRRFVVRAT
Sbjct: 1   MSAGLAKCAKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTGCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQ 120
           YLNHP+FKKLLVQAEEE+GF+NQGPL IPCDE+LFEE IR ISRSE+G S  FVN ED Q
Sbjct: 61  YLNHPIFKKLLVQAEEEFGFSNQGPLTIPCDETLFEEMIRCISRSENGKSDLFVNLEDLQ 120

Query: 121 RYCHVGFKK-NIDFWTESRPLLHGIAS 146
           RYCHVG K   +DFWT+SRPLLH   S
Sbjct: 121 RYCHVGVKNAKLDFWTDSRPLLHSDNS 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458032|ref|XP_002277332.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/154 (78%), Positives = 137/154 (88%), Gaps = 7/154 (4%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKA----RMSAARIPSDVPAGYVAVCVGTSCRRFV 56
           MSVGFGKCSKIRHIVRLRQMLRRWR+KA    RMS++ IPSDVPAG+VAVCVGT  +RFV
Sbjct: 1   MSVGFGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFV 60

Query: 57  VRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNF 116
           VRATYLNHPVFKKLLV+AEEEYGFTNQGPL++PCDES+FEE + FISRSE+ +SARFVN 
Sbjct: 61  VRATYLNHPVFKKLLVEAEEEYGFTNQGPLSLPCDESVFEEILCFISRSEASNSARFVNR 120

Query: 117 EDFQRYCHVGFKKNIDFWTESRPLLHGIASKTIW 150
           EDFQRYCHVG + ++DFW ESRPLLH   SK+IW
Sbjct: 121 EDFQRYCHVGIRSSLDFWPESRPLLH---SKSIW 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790039|emb|CAN60527.1| hypothetical protein VITISV_000524 [Vitis vinifera]

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 136/156 (87%), Gaps = 6/156 (3%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKA----RMSAARIPSDVPAGYVAVCVGTSCRRFV 56
           MSVGFGKCSKIRHIVRLRQMLRRWR+KA    RMS++ IPSDVPAG+VAVCVGT  +RFV
Sbjct: 1   MSVGFGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFV 60

Query: 57  VRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNF 116
           VRATYLNHPVFKKLLV+AEEEYGFTNQGPL++PCDES+FEE + FISRSE+ +SARFVN 
Sbjct: 61  VRATYLNHPVFKKLLVEAEEEYGFTNQGPLSLPCDESVFEEILCFISRSEASNSARFVNR 120

Query: 117 EDFQRYCHVGFKKNIDFWTESRPLLHGI--ASKTIW 150
           EDFQRYCHVG + ++DFW ESRPLLH +    K +W
Sbjct: 121 EDFQRYCHVGIRSSLDFWPESRPLLHRVCFTPKNVW 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562397|ref|XP_003549458.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 125/149 (83%), Gaps = 4/149 (2%)

Query: 6   GKCSKIRHIVRLRQMLRRWRNKARMSAARIP-SDVPAGYVAVCVGTSCRRFVVRATYLNH 64
            KCS+IRHIVRLRQMLRRWRNKARMSA R P SDVPAG+VAVCVG++  RFVVRATYLNH
Sbjct: 3   AKCSQIRHIVRLRQMLRRWRNKARMSANRAPPSDVPAGHVAVCVGSNLTRFVVRATYLNH 62

Query: 65  PVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFE--DFQR- 121
           PVFKKLL+QAEEEYGFTN GPLAIPCDE+LF + +RFISRS+   S RF+N E  DFQR 
Sbjct: 63  PVFKKLLLQAEEEYGFTNHGPLAIPCDETLFRDVLRFISRSDPAKSNRFLNLELDDFQRH 122

Query: 122 YCHVGFKKNIDFWTESRPLLHGIASKTIW 150
           YCHVG   N+DFW ESRPLLHG   KTIW
Sbjct: 123 YCHVGISNNLDFWPESRPLLHGPTDKTIW 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552069|ref|XP_003544393.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 126/149 (84%), Gaps = 4/149 (2%)

Query: 6   GKCSKIRHIVRLRQMLRRWRNKARMSAARIP-SDVPAGYVAVCVGTSCRRFVVRATYLNH 64
            KCS+IRHIVRLRQMLRRWRNKARMSA R P SDVPAG+VAVCVG++  RFVVRATYLNH
Sbjct: 3   AKCSQIRHIVRLRQMLRRWRNKARMSANRAPPSDVPAGHVAVCVGSNLTRFVVRATYLNH 62

Query: 65  PVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFE--DFQR- 121
           PVFKKLL+QAEEEYGFTN GPLAIPCDE+LF++ +RFISRS+   S RF+N E  DFQR 
Sbjct: 63  PVFKKLLLQAEEEYGFTNHGPLAIPCDETLFQDVLRFISRSDPAKSNRFLNLELDDFQRH 122

Query: 122 YCHVGFKKNIDFWTESRPLLHGIASKTIW 150
           +CHVG   N+DFW ESRPLLHG   KTIW
Sbjct: 123 HCHVGISNNLDFWPESRPLLHGPTDKTIW 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410889|ref|NP_565113.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|332197615|gb|AEE35736.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 127/154 (82%), Gaps = 4/154 (2%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAAR---IPSDVPAGYVAVCVGTSCRRFVV 57
           M+ G GKCSKIRHIVRLRQMLRRWR++ARMS++    +PSDVP+G+VAV VG+SCRRFVV
Sbjct: 1   MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60

Query: 58  RATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFE 117
           RATYLNHPV + LLVQAEEE+GF NQGPL IPC+ES+FEE+IRFISRS+S  S RF   +
Sbjct: 61  RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPD 120

Query: 118 DFQRYCH-VGFKKNIDFWTESRPLLHGIASKTIW 150
           DFQ+ CH VG +  +D W ESRPLLHG+  K +W
Sbjct: 121 DFQKNCHVVGIRSKLDLWIESRPLLHGVTEKAVW 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592934|gb|AAM64884.1| auxin-induced protein, putative [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 126/154 (81%), Gaps = 4/154 (2%)

Query: 1   MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAAR---IPSDVPAGYVAVCVGTSCRRFVV 57
           M+ G GKCSKIRHIVRLRQMLRRWR++ARMS++    +PSD+P+G+VAV VG+SCRRFVV
Sbjct: 1   MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDLPSGHVAVYVGSSCRRFVV 60

Query: 58  RATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFE 117
           RATYLNHPV + LLVQAEEE+GF NQGPL IPC+ES+FEE+IRFISRS+S  S RF   +
Sbjct: 61  RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPD 120

Query: 118 DFQRYCH-VGFKKNIDFWTESRPLLHGIASKTIW 150
           DFQ+ CH VG +   D W ESRPLLHG+  K +W
Sbjct: 121 DFQKNCHVVGIRSKPDLWIESRPLLHGVTEKAVW 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	1.0	0.974	0.694	6.1e-55
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.953	0.934	0.689	1.9e-51
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.966	0.979	0.633	2e-47
TAIR|locus:2139569	150	AT4G34750 [Arabidopsis thalian	0.94	0.94	0.549	2.4e-35
TAIR|locus:2061037	178	AT2G24400 "AT2G24400" [Arabido	0.473	0.398	0.422	2.7e-18
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.446	0.418	0.492	1.4e-17
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.46	0.365	0.405	9.8e-17
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.64	0.923	0.383	3.4e-13
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.6	0.841	0.378	9.1e-13
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.58	0.878	0.409	1.2e-12

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 107/154 (69%), Positives = 128/154 (83%)

Query:     1 MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAA--R-IPSDVPAGYVAVCVGTSCRRFVV 57
             M+ G GKCSKIRHIVRLRQMLRRWR++ARMS++  R +PSDVP+G+VAV VG+SCRRFVV
Sbjct:     1 MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60

Query:    58 RATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFE 117
             RATYLNHPV + LLVQAEEE+GF NQGPL IPC+ES+FEE+IRFISRS+S  S RF   +
Sbjct:    61 RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPD 120

Query:   118 DFQRYCHV-GFKKNIDFWTESRPLLHGIASKTIW 150
             DFQ+ CHV G +  +D W ESRPLLHG+  K +W
Sbjct:   121 DFQKNCHVVGIRSKLDLWIESRPLLHGVTEKAVW 154

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 102/148 (68%), Positives = 120/148 (81%)

Query:     7 KCSKIRHIVRLRQMLRRWRNKARMSAAR--IPSDVPAGYVAVCVGTSCRRFVVRATYLNH 64
             KCSKIRHIVRLRQMLRRWRNKAR+S+    +PSDVP+G+VAVCVG+ CRRFVVRA+YLNH
Sbjct:     7 KCSKIRHIVRLRQMLRRWRNKARLSSVSRCVPSDVPSGHVAVCVGSGCRRFVVRASYLNH 66

Query:    65 PVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFEDFQRYCH 124
             P+   LLVQAEEE+GF NQGPL IPC+ES+FEEAIRFISRS+S  S+RF   +D Q+ C+
Sbjct:    67 PIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDSSRSSRFTCPDDLQK-CN 125

Query:   125 VGFK--KNIDFWTESRPLLHGIASKTIW 150
              G K    +D   ESRPLLHG+A K IW
Sbjct:   126 GGIKIKSKLDLMIESRPLLHGVAEKAIW 153

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 97/153 (63%), Positives = 119/153 (77%)

Query:     1 MSVGFGKCSKIRHIVRLRQMLRRWRNKARMSAAR--IPSDVPAGYVAVCVGTSCRRFVVR 58
             M+ G GKCSKIRHIV+LRQMLR+WRNKARMS+ R  +PSDVP+G+VAV VG SCRRFVV 
Sbjct:     1 MAGGIGKCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVL 60

Query:    59 ATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVNFED 118
             ATYLNHP+   LLV+AEEE+GF NQGPL IPC+ES+FEE+IRFI+RS     +RF   +D
Sbjct:    61 ATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITRS-----SRFTCTDD 115

Query:   119 FQRYCHVGFKKNIDFWTESRPLLHGIASKTI-W 150
              ++  H G +  +D   ESRPLLHG++ K I W
Sbjct:   116 LKKNRHGGIRSKLDLLMESRPLLHGVSEKAIIW 148

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139569 AT4G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 83/151 (54%), Positives = 106/151 (70%)

Query:     6 GKCSKIRHIVRLRQMLRRWRNKARM-SAARIP-SDVPAGYVAVCVGTSCRRFVVRATYLN 63
             GK +KI  +VR+RQML++W+ KA + S+   P SDVP G+VAV VG + RR+VVRA +LN
Sbjct:     2 GKNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHLN 61

Query:    64 HPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRSESGHSARFVN-----FED 118
             HP+F++LL +AEEEYGF N GPLAIPCDESLFE+ I  ++R ES  S+   N      ED
Sbjct:    62 HPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNPPAATLED 121

Query:   119 FQRYCHVGFKKNIDFWTESRPLLHGIASKTI 149
              +R  HVG  KN     ESRPLL GIA K++
Sbjct:   122 LRRCSHVGLAKNN---VESRPLLPGIAEKSV 149

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2061037 AT2G24400 "AT2G24400" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query:    39 VPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEA 98
             VP GY+AV VG   +R+ +   YL+H  F  LL +AEEE+GF   G L IPC+ S+FE  
Sbjct:    64 VPKGYLAVSVGLEKKRYTIPTEYLSHQAFYVLLREAEEEFGFQQAGVLRIPCEVSVFESI 123

Query:    99 IRFISRSESGH 109
             ++ +     G+
Sbjct:   124 LKIMEEKNEGY 134

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query:    36 PSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLF 95
             P DVP GY+AV VG   RRF++   +L+H +FK LL +AEEEYGF + G L IPC+   F
Sbjct:    76 PPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETF 135

Query:    96 EEAIRFI 102
             +  ++ I
Sbjct:   136 KYLLKCI 142

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query:    39 VPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEA 98
             +P GY+AV VG   +R+ +   YL+H  F  LL +AEEE+GF   G L IPC+ ++FE  
Sbjct:    80 IPKGYLAVSVGKEEKRYKIPTEYLSHQAFHVLLREAEEEFGFEQAGILRIPCEVAVFESI 139

Query:    99 IRFISRSES 107
             ++ +  ++S
Sbjct:   140 LKIMEDNKS 148

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 38/99 (38%), Positives = 55/99 (55%)

Query:     7 KCSKIRHIVRLRQMLRRWRNKARMSAAR---IPSDVPAGYVAVCVGTSCRRFVVRATYLN 63
             + SK+     L+Q+L+R  + A+        +P DVP G+  V VG    R++V  ++L 
Sbjct:     5 RSSKLTQTAMLKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLT 64

Query:    64 HPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFI 102
             HP FK LL QAEEE+GF +   L IPC+E +F      I
Sbjct:    65 HPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 36/95 (37%), Positives = 56/95 (58%)

Query:     7 KCSKIRHIVRLRQMLRRWRNKARMSAAR-----IPSDVPAGYVAVCVGTSCRRFVVRATY 61
             K SK+     L+Q+L+R  +  + +        +P DVP G+  V VG +  R++V  ++
Sbjct:     6 KTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISF 65

Query:    62 LNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFE 96
             L HP F+ LL +AEEE+GF +   L IPCDE +F+
Sbjct:    66 LTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQ 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query:    17 LRQMLRRWRNKARMSAARIP-SDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAE 75
             L+QML+R  +  + S+  +  + VP G+  V VG S  R V+  ++L HP+F+ LL Q+E
Sbjct:    11 LKQMLKRCSSLGKKSSVDVNFNGVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSE 70

Query:    76 EEYGFTNQGPLAIPCDESLFEEAIRFIS 103
             EE+GF     L IPCDE  F   I  I+
Sbjct:    71 EEFGFFQDNGLTIPCDEHFFRALISSIN 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-33
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-17
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	3e-14
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	5e-12

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  112 bits (283), Expect = 3e-33
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 2/99 (2%)

Query: 7   KCSKIRHIVRLRQMLRRWRNKARM--SAARIPSDVPAGYVAVCVGTSCRRFVVRATYLNH 64
             S+++     ++ +    +      S+    +DVP G+ AV VG   RRFVV  +YLNH
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNH 60

Query: 65  PVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFIS 103
           P+F++LL +AEEE+GF   G L IPCD  +FE  +  + 
Sbjct: 61  PLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 7   KCSKIRHIVRLRQMLRR---WRNKARMSAARIPSDVPAGYVAVCVGTSCRRFVVRATYLN 63
           K +K+     L+Q+L+R      K       +P DVP G+  V VG +  R++V  ++L 
Sbjct: 5   KSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLT 64

Query: 64  HPVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFI 102
           HP F+ LL QAEEE+GF +   L IPC+E +F      I
Sbjct: 65  HPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 64.0 bits (155), Expect = 3e-14
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 10/100 (10%)

Query: 5   FGKCSKIRHIVRLRQMLRRWRNKARMSAARIPSDVPAGYVAVCVGTSC----RRFVVRAT 60
           F   +  + I++L  +  R R  +  S       VP G+VAV VG       +RFVV  +
Sbjct: 6   FAISNATKQILKLNSLANRNRTSSSSS-----DHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLFEEAI 99
           +LNHP FK+ L +AEEE+GF +  G L IPC E +F + I
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLI 100

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 58.6 bits (141), Expect = 5e-12
 Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 39 VPAGYVAVCVGTSC--RRFVVRATYLNHPVFKKLLVQAEEEYGFTNQ-GPLAIPCDESLF 95
          VP G+VAV VG     +RFVV  +YLNHP+F++ L +AEEE GF +  G L IPC E  F
Sbjct: 39 VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.66
PRK02899	197	adaptor protein; Provisional	83.27

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=258.24  Aligned_cols=100  Identities=36%  Similarity=0.677  Sum_probs=93.9

Q ss_pred             CCCCcccchhhHHHHHHHHHHHhhhhhccC---CCCCCCCCCCcEEEEecccceeeeeeccccCcHHHHHHHHHHHHhcC
Q 043725            3 VGFGKCSKIRHIVRLRQMLRRWRNKARMSA---ARIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYG   79 (150)
Q Consensus         3 ~~~~k~~ki~~~~rLkq~~kkW~~~a~~~~---~~~~~~vpkG~~aVYVG~e~~RfvVp~~yLnhP~F~~LL~~aeEEfG   79 (150)
                      |+++|++||+++++|+||++||+++++.+.   ...|.+||+||||||||++++||+||++|||||+|++||++||||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG   80 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG   80 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999886543   34678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeecCCHHHHHHHHHHH
Q 043725           80 FTNQGPLAIPCDESLFEEAIRFI  102 (150)
Q Consensus        80 f~~~G~L~IPC~~~~Fe~ll~~i  102 (150)
                      |+++|+|+||||+++|++++|+|
T Consensus        81 f~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         81 FDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCcEEEeCCHHHHHHHHHHh
Confidence            99999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5.4e-35  Score=215.28  Aligned_cols=87  Identities=48%  Similarity=0.877  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhhhhccCC-------CCCCCCCCCcEEEEecccceeeeeeccccCcHHHHHHHHHHHHhcCCCCCCCeeec
Q 043725           17 LRQMLRRWRNKARMSAA-------RIPSDVPAGYVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIP   89 (150)
Q Consensus        17 Lkq~~kkW~~~a~~~~~-------~~~~~vpkG~~aVYVG~e~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~~~G~L~IP   89 (150)
                      ..+++++|++.++..+.       ....++|+||||||||++++||+||++|||||+|++||++|+|||||+++|+|+||
T Consensus         7 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iP   86 (100)
T PF02519_consen    7 SLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIP   86 (100)
T ss_pred             HHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEee
Confidence            44556677776543221       11378999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHh
Q 043725           90 CDESLFEEAIRFIS  103 (150)
Q Consensus        90 C~~~~Fe~ll~~i~  103 (150)
                      ||+++|++++|+|+
T Consensus        87 C~~~~Fe~~l~~le  100 (100)
T PF02519_consen   87 CDVVLFEHLLWLLE  100 (100)
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=6.9e-34  Score=211.72  Aligned_cols=67  Identities=49%  Similarity=0.867  Sum_probs=62.6

Q ss_pred             CCCCCCCCCcEEEEecc----cceeeeeeccccCcHHHHHHHHHHHHhcCCCC-CCCeeecCCHHHHHHHHH
Q 043725           34 RIPSDVPAGYVAVCVGT----SCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLFEEAIR  100 (150)
Q Consensus        34 ~~~~~vpkG~~aVYVG~----e~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~~-~G~L~IPC~~~~Fe~ll~  100 (150)
                      ..+.+|||||||||||+    +++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|++++.
T Consensus        30 ~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         30 SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             cccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            35679999999999997    47999999999999999999999999999998 699999999999999975

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.2e-31  Score=200.46  Aligned_cols=69  Identities=48%  Similarity=0.762  Sum_probs=63.8

Q ss_pred             CCCCCCCCCcEEEEecc--cceeeeeeccccCcHHHHHHHHHHHHhcCCCC-CCCeeecCCHHHHHHHHHHH
Q 043725           34 RIPSDVPAGYVAVCVGT--SCRRFVVRATYLNHPVFKKLLVQAEEEYGFTN-QGPLAIPCDESLFEEAIRFI  102 (150)
Q Consensus        34 ~~~~~vpkG~~aVYVG~--e~~RfvVp~~yLnhP~F~~LL~~aeEEfGf~~-~G~L~IPC~~~~Fe~ll~~i  102 (150)
                      +.+.+||+||||||||+  +++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++..-
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            34678999999999997  58999999999999999999999999999997 69999999999999998753

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.66  E-value=0.8  Score=31.80  Aligned_cols=58  Identities=19%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             EEecccceeeeeeccccC-c--HHHHHHHHHHHHhcCCCCCCCeeecCCHHHHHHHHHHHhcC
Q 043725           46 VCVGTSCRRFVVRATYLN-H--PVFKKLLVQAEEEYGFTNQGPLAIPCDESLFEEAIRFISRS  105 (150)
Q Consensus        46 VYVG~e~~RfvVp~~yLn-h--P~F~~LL~~aeEEfGf~~~G~L~IPC~~~~Fe~ll~~i~~~  105 (150)
                      .=||  .++|.++.+.|. +  ..|..++........-+.+|.+-|-++...|++|+..++.+
T Consensus         3 lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    3 LNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            3466  589999998877 4  47888887653222234579999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=83.27  E-value=1  Score=36.77  Aligned_cols=25  Identities=36%  Similarity=0.910  Sum_probs=21.8

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCCeee
Q 043725           64 HPVFKKLLVQAEEEYGFTNQGPLAI   88 (150)
Q Consensus        64 hP~F~~LL~~aeEEfGf~~~G~L~I   88 (150)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3578888999999999999999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00