Citrus Sinensis ID: 043751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MEIQFQQQKQLQKACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccccccccccccccccccccEEcccccccEEHHHccccccccEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHcccccccccccHHHHHHHccccccccccHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHccccccHHHHccHHHHHHccccccccccccccHHHHcc
Coil and Loop (DISEMBL)
MEIQFQQQKQLQKACINQVNRagkfkgrnrtksnskfvgvrqrpsgrwvAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLlrgsntrtnfdtnvsfdsplASRIRNLVnnkkgcqqqsveasatttttaytptstatsnssctscsgvisgelsssssdiiqdaqlfddaykpdlskciedfelgsaqidhswgsgngvdqfsytqelldlpengalpetttdsefAEFERMKVERQISASLYAINGVQEYMDTVHDAAEafwdlpplcsyal
Flexible Loop (DISEMBL)
MEIQFQQQKQLQKACINQvnragkfkgrnrtksnskfvgvrqrpsgrwvaeikdttkkIRVWLGTFETAEEAARAYDEAACLLRgsntrtnfdtnvsfdspLASRIRNLVNnkkgcqqqsveasatttttaytptstatsnsscTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Low Complexity Region (SEG)
MEIqfqqqkqlqkACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFetaeeaaraydeaaCLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEasatttttaytptstatsnssctscsgvisgelsssssDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Disordered region (IsUnstruct)
********************************************SGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSF****************************************************************IQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDL*****************FERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSY**
Disordered Region (DISOPRED)
****************************************RQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFD***********************************************************************************************AQIDHSWGSGNGVDQFSYTQELLDL***********************************GVQEYMDTVHDAAEAFWDLPPLCSYAL
Disordered Region (DISEMBL)
*************ACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNK************************************VISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Disordered Region (DISPRO)
********************************SNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDS*L*SRIRNLVNNKKGCQQQ*************************************************FDDAYKPDLSKCIEDFEL*S*QIDHSWGSGNGVDQF**TQELLDL************SE*AEFE*MK**RQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIQFQQQKQLQKACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q6J9S1	253	Ethylene-responsive trans	yes	no	0.832	0.905	0.396	1e-38
Q9XI33	199	Ethylene-responsive trans	no	no	0.218	0.301	0.683	1e-16
Q9M644	211	Ethylene-responsive trans	no	no	0.316	0.412	0.488	2e-16
O80340	222	Ethylene-responsive trans	no	no	0.24	0.297	0.608	2e-16
Q9SUQ2	343	Ethylene-responsive trans	no	no	0.323	0.259	0.449	2e-16
Q6J9Q2	348	Ethylene-responsive trans	no	no	0.389	0.307	0.426	3e-16
O82503	287	Ethylene-responsive trans	no	no	0.469	0.449	0.361	3e-16
Q9FK12	354	Ethylene-responsive trans	no	no	0.243	0.189	0.539	7e-16
Q8H0T5	211	Ethylene-responsive trans	no	no	0.229	0.298	0.571	1e-15
Q9FH54	248	Ethylene-responsive trans	no	no	0.232	0.258	0.593	1e-15

>sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 143/257 (55%), Gaps = 28/257 (10%)

Query: 24  KFKGRNRTKSN-SKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACL 82
           K K + ++K N +KFVGVRQRPSG+WVAEIKDTT+KIR+WLGTFETAEEAARAYDEAACL
Sbjct: 8   KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACL 67

Query: 83  LRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEASATTTTTAYTPTSTATSNS 142
           LRGSNTRTNF  +   +S L+ +IRNL+           ++        + P S+ T   
Sbjct: 68  LRGSNTRTNFANHFPNNSQLSLKIRNLL--------HQKQSMKQQQQQQHKPVSSLT--- 116

Query: 143 SCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVD 202
            C       +  L+++++     A   ++ Y+PD S  I   E    Q+ +SW   +G +
Sbjct: 117 DCNINYISTATSLTTTTTTTTTTAIPLNNVYRPD-SSVIGQPETEGLQLPYSWPLVSGFN 175

Query: 203 QFSYTQELLDLPENGALPETTTDSEFAEFERM---KVERQISASLYAINGVQEYMDT--- 256
                   + L + G       +  ++  + +   ++ERQISASLYA+NG   Y D    
Sbjct: 176 H------QIPLAQAGGETHGHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNA 229

Query: 257 ---VHDAAEAFWDLPPL 270
              + D  +  WDLP L
Sbjct: 230 EYAIFDPTDPIWDLPSL 246

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 45/60 (75%)

Query: 36 KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN 95
          KF GVRQR  G WVAEI+    K R+WLGTFETAEEAARAYDEAA L+ G N +TNF  N
Sbjct: 6  KFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLN 65

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Confers drought resistance. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 3/90 (3%)

Query: 22  AGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAAC 81
           + K K +   +  ++F+GVR+RP GR+ AEI+D T K R WLGTF+TAEEAA AYD AA 
Sbjct: 5   SSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAR 64

Query: 82  LLRGSNTRTNFDTNVSFDSPLASRIRNLVN 111
            +RG+  RTNF   V  D P +S + ++V+
Sbjct: 65  SMRGTRARTNF---VYSDMPPSSSVTSIVS 91

Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 3/69 (4%)

Query: 29 NRTKSNSK---FVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRG 85
          N+T +N+K   + GVR+RP GR+ AEI+D  KK RVWLGTF+TAEEAARAYD AA   RG
Sbjct: 14 NQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRG 73

Query: 86 SNTRTNFDT 94
          +  +TNF T
Sbjct: 74 AKAKTNFPT 82

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 55/89 (61%)

Query: 4   QFQQQKQLQKACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWL 63
           Q + +K+ ++A  ++   +        T    KF GVRQRP G+W AEI+D  K++R+WL
Sbjct: 89  QMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWL 148

Query: 64  GTFETAEEAARAYDEAACLLRGSNTRTNF 92
           GT+ TAEEAA  YD AA  LRG +  TNF
Sbjct: 149 GTYNTAEEAAMVYDNAAIQLRGPDALTNF 177

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 15/122 (12%)

Query: 8   QKQLQKACINQVNRA--------GKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKK 58
           Q Q+  A I+Q   A        G+ +GR   ++   +F+GVR+RP GR+ AEI+D T K
Sbjct: 17  QTQMGFALIHQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTK 76

Query: 59  IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNF-----DTNVSFDSP-LASRIRNLVNN 112
            R WLGTF+TA EAA AYD AA  +RG+  RTNF     D +    +P L S I +  NN
Sbjct: 77  ERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYTPTDVHTILTNPNLHSLIVSPYNN 136

Query: 113 KK 114
            +
Sbjct: 137 NQ 138

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 72/144 (50%), Gaps = 15/144 (10%)

Query: 36  KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN 95
           KF GVRQRP G+W AEI+D ++++RVWLGTF+TAEEAA  YD AA  LRG N   NF   
Sbjct: 86  KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPP- 144

Query: 96  VSFDSPLASRIRNLVNNKKGCQQ------QSVEASATTTTTAYTPTSTATSNS--SCTSC 147
                P+   +       KG         + + +  +   + ++  STA        ++ 
Sbjct: 145 ----PPVTENVEEASTEVKGVSDFIIGGGECLRSPVSVLESPFSGESTAVKEEFVGVSTA 200

Query: 148 SGVISGELSSSSSDIIQDAQLFDD 171
             V+  E S + SD    A LF D
Sbjct: 201 EIVVKKEPSFNGSDF--SAPLFSD 222

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 9/76 (11%)

Query: 17  NQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAY 76
           N+V+ +G+ K         KF GVRQRP G+W AEI+D  ++ R+WLGTFETAEEAA  Y
Sbjct: 114 NKVSVSGQIK---------KFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVY 164

Query: 77  DEAACLLRGSNTRTNF 92
           D AA  LRG +  TNF
Sbjct: 165 DNAAIRLRGPDALTNF 180

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0T5|ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 30 RTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTR 89
          + K +S++ G+R+RP GRW AEI+D  K +RVWLGTF TAEEAARAYD  A  +RG+  +
Sbjct: 18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAK 77

Query: 90 TNF 92
           NF
Sbjct: 78 LNF 80

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 43/64 (67%)

Query: 37  FVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNV 96
           + GVRQRP G+W AEI+D  K  RVWLGTFETAE AA AYDEAA   +GS  + NF   V
Sbjct: 90  YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149

Query: 97  SFDS 100
              S
Sbjct: 150 QLGS 153

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
225441591	260	PREDICTED: ethylene-responsive transcrip	0.927	0.980	0.642	1e-89
224123754	270	AP2/ERF domain-containing transcription	0.974	0.992	0.665	6e-89
357508691	278	Ethylene-responsive transcription factor	0.967	0.956	0.610	9e-82
116831753	268	transcription factor ERF [Medicago trunc	0.956	0.981	0.616	2e-81
148540329	248	ERF transcription factor [Pisum sativum]	0.894	0.991	0.630	3e-81
388514713	268	unknown [Medicago truncatula]	0.956	0.981	0.616	4e-81
217074270	286	unknown [Medicago truncatula]	0.956	0.919	0.610	5e-80
356571723	275	PREDICTED: ethylene-responsive transcrip	0.978	0.978	0.592	1e-76
224146005	260	AP2/ERF domain-containing transcription	0.912	0.965	0.598	3e-75
356560913	285	PREDICTED: ethylene-responsive transcrip	0.912	0.880	0.569	5e-74

>gi|225441591|ref|XP_002281619.1| PREDICTED: ethylene-responsive transcription factor RAP2-11 [Vitis vinifera] gi|297739771|emb|CBI29953.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/274 (64%), Positives = 209/274 (76%), Gaps = 19/274 (6%)

Query: 1   MEIQFQQQKQLQKACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEIQFQQ K    A      +  KFKGRNR+ SN+KFVGVRQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQPKGAIPA-----TKVRKFKGRNRSNSNNKFVGVRQRPSGRWVAEIKDTTQKIR 55

Query: 61  VWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQ-- 118
           +WLGTFETAEEAARAYDEAACLLRGSNTRTNF  NVS +SPLASRIR L++NKKG +Q  
Sbjct: 56  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPNVSSNSPLASRIRTLLDNKKGAKQPK 115

Query: 119 QSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
           Q+   S+  +TT  TP +++ ++S             +S SS+ IQ+ QLFDDAYKPDLS
Sbjct: 116 QTSVDSSNISTTIVTPCASSCTSSG-----------SNSLSSEKIQETQLFDDAYKPDLS 164

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            C E+ ELGS++   SWG   G D+FS+ Q++LDLP+NG L E   + EF+EFERMKVER
Sbjct: 165 NCSEEVELGSSESGLSWGFAAGFDRFSFAQQVLDLPKNGGLQE-AAEGEFSEFERMKVER 223

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPPLCS 272
           QISASLYA+NGVQEYMDTVHD ++A WDLPPLCS
Sbjct: 224 QISASLYAMNGVQEYMDTVHDPSDALWDLPPLCS 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123754|ref|XP_002319156.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222857532|gb|EEE95079.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/272 (66%), Positives = 210/272 (77%), Gaps = 4/272 (1%)

Query: 1   MEIQFQQQKQLQKACINQVNRAGKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKKI 59
           MEI FQQQKQ + A I  V++A KFKGR R  SNS KFVGVRQR SGRWVAEIKDTT+KI
Sbjct: 1   MEIHFQQQKQHKNASI-PVSKASKFKGRGRPNSNSNKFVGVRQRTSGRWVAEIKDTTQKI 59

Query: 60  RVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQ 119
           R+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NNK+  QQQ
Sbjct: 60  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSVDSPLASRIRNLLNNKRRDQQQ 119

Query: 120 -SVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
            S E +A  +T   +  +T +S  + +S S   SG   + SS I +   LFDDAYKPDL 
Sbjct: 120 HSEEETAEASTPPTSTITTTSSTITTSSSSSSSSGMSDNYSSSIHETDHLFDDAYKPDLR 179

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            CIE+F+LGS+Q D S G G   D+FSY QE+LD P++  LPE  +DSEF+EF+RMKVER
Sbjct: 180 NCIEEFKLGSSQSDLSRGFGPLFDRFSYAQEVLDFPKSVVLPE-ASDSEFSEFDRMKVER 238

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPPL 270
           QISASLYAINGVQEYM+ V+D  EA WDLPPL
Sbjct: 239 QISASLYAINGVQEYMEAVYDPIEALWDLPPL 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508691|ref|XP_003624634.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355499649|gb|AES80852.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 169/277 (61%), Positives = 209/277 (75%), Gaps = 11/277 (3%)

Query: 1   MEIQFQQ-QKQLQKACINQVNRAGKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKK 58
           MEIQFQQ   Q QKA I+  N+ GKFKGRNR  +N+ KFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 59  IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQ 118
           IR+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 119 QSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
           Q   A A+       P+++ T+ S+ ++ +     + S+ S+   ++ +LF+DAYKPDLS
Sbjct: 121 QEDGAVAS------APSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLS 174

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            C E FE GS Q + S G G   D FS+TQ LLD+ +N  + + ++  E +EFERMKVER
Sbjct: 175 NCKEVFESGS-QSNISCGFGPFFDHFSFTQ-LLDMAKNDDITDASS-LELSEFERMKVER 231

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPPLCSYAL 275
           QISASLYAINGV EYM+TV ++ EA WDLPPLCS  +
Sbjct: 232 QISASLYAINGVHEYMETVQESNEALWDLPPLCSLYI 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831753|gb|ABK28850.1| transcription factor ERF [Medicago truncatula] gi|124361009|gb|ABN08981.1| Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] gi|148540331|gb|ABQ85894.1| ERF transcription factor [Medicago truncatula] gi|291094390|gb|ABW06102.2| ERN1 [Medicago truncatula]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/274 (61%), Positives = 208/274 (75%), Gaps = 11/274 (4%)

Query: 1   MEIQFQQ-QKQLQKACINQVNRAGKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKK 58
           MEIQFQQ   Q QKA I+  N+ GKFKGRNR  +N+ KFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 59  IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQ 118
           IR+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 119 QSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
           Q   A A+       P+++ T+ S+ ++ +     + S+ S+   ++ +LF+DAYKPDLS
Sbjct: 121 QEDGAVAS------APSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLS 174

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            C E FE GS Q + S G G   D FS+TQ LLD+ +N  + + ++  E +EFERMKVER
Sbjct: 175 NCKEVFESGS-QSNISCGFGPFFDHFSFTQ-LLDMAKNDDITDASS-LELSEFERMKVER 231

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPPLCS 272
           QISASLYAINGV EYM+TV ++ EA WDLPPLCS
Sbjct: 232 QISASLYAINGVHEYMETVQESNEALWDLPPLCS 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148540329|gb|ABQ85893.1| ERF transcription factor [Pisum sativum]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/252 (63%), Positives = 186/252 (73%), Gaps = 6/252 (2%)

Query: 25  FKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLL 83
           FKGRNR  +N+ KFVGVRQRPSGRWVAEIKDTT+KIR+WLGTFETAEEAARAYDEAACLL
Sbjct: 1   FKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 60

Query: 84  RGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEASATTTTTAYTPTSTATSNSS 143
           RGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++Q   A A+  +    PTS+ T  ++
Sbjct: 61  RGSNTRTNFITHVSLDSPLASRIRNLLNNRKGEKKQEDNAVASAPSNIKAPTSSNTDTNT 120

Query: 144 CTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVDQ 203
            TS        LSS ++   Q+ +LF+D YKPDLS C EDFE GS Q + SWG G   D 
Sbjct: 121 VTSNDDNKENSLSSEAT---QNKELFEDGYKPDLSNCKEDFESGS-QSNFSWGFGPVFDH 176

Query: 204 FSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQEYMDTVHDAAEA 263
           F + Q LLD+ +N       +  E +EFERMKVERQISASLYAINGV EYM+ VHD+ E 
Sbjct: 177 FPFAQ-LLDITKNNDGMIDASSLELSEFERMKVERQISASLYAINGVHEYMEAVHDSNEX 235

Query: 264 FWDLPPLCSYAL 275
            WDLPPLCS  L
Sbjct: 236 LWDLPPLCSLFL 247

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514713|gb|AFK45418.1| unknown [Medicago truncatula]

 Score =  307 bits (786), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/274 (61%), Positives = 207/274 (75%), Gaps = 11/274 (4%)

Query: 1   MEIQFQQ-QKQLQKACINQVNRAGKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKK 58
           MEIQFQQ   Q QKA I+  N+ GKFKGRNR  +N+ KFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 59  IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQ 118
           IR+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 119 QSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
           Q   A A+       P+++ T+ S+ ++ +     + S+ S+   ++ +LF+DAYKPDLS
Sbjct: 121 QEDGAVAS------APSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLS 174

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            C E FE GS Q + S G G   D FS+TQ LLD+ +N  + + ++  E +EFERMKVER
Sbjct: 175 NCKEVFESGS-QSNISCGFGPFFDHFSFTQ-LLDMAKNDDITDASS-LELSEFERMKVER 231

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPPLCS 272
           QISASLYAINGV EYM+TV +  EA WDLPPLCS
Sbjct: 232 QISASLYAINGVHEYMETVQEFNEALWDLPPLCS 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074270|gb|ACJ85495.1| unknown [Medicago truncatula]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 169/277 (61%), Positives = 208/277 (75%), Gaps = 14/277 (5%)

Query: 1   MEIQFQQ-QKQLQKACINQVNRAGKFKGRNRTKSNS-KFVGVRQRPSGRWVAEIKDTTKK 58
           MEIQFQQ   Q QKA I+  N+ GKFKGRNR  +N+ KFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 59  IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQ 118
           IR+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 119 QSVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLS 178
           Q   A A+       P+++ T+ S+ ++ +     + S+ S+   ++ +LF+DAYKPDLS
Sbjct: 121 QEDGAVAS------APSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLS 174

Query: 179 KCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVER 238
            C E FE GS Q + S G G   D FS+TQ LLD+ +N  + + ++  E +EFERMKVER
Sbjct: 175 NCKEVFESGS-QSNISCGFGPFFDHFSFTQ-LLDMAKNDDITDASS-LELSEFERMKVER 231

Query: 239 QISASLYAINGVQEYMDTVHDAAEAFWDLPP---LCS 272
           QISASLYAINGV EYM+TV ++ EA WDLPP   LCS
Sbjct: 232 QISASLYAINGVHEYMETVQESNEALWDLPPFVLLCS 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571723|ref|XP_003554023.1| PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Glycine max]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 163/275 (59%), Positives = 196/275 (71%), Gaps = 6/275 (2%)

Query: 1   MEIQFQQQK-QLQKACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKI 59
           MEIQFQQ   Q QK+ I  + + GKFKGR+R  + +KFVGVRQRPSGRWVAEIKDTT+KI
Sbjct: 1   MEIQFQQPNLQHQKSGI-AITKGGKFKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKI 59

Query: 60  RVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQ 119
           R+WLGTFETAEEAARAYDEAACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG +++
Sbjct: 60  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKE 119

Query: 120 --SVEASATTTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDL 177
             +   +        + TS+ATS  + ++ S        S S+   Q + LFDDAYKPDL
Sbjct: 120 EDANANANNAPAPRVSTTSSATSTGTSSNSSNGNDNNDQSLSTVTTQSSNLFDDAYKPDL 179

Query: 178 SKCIEDFELGSAQIDHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVE 237
           S C E+FE G  Q + SW  G   D+F   Q + D+P+         D + +EFERMKVE
Sbjct: 180 SNCREEFESGH-QSNTSWCFGPVFDRFPMAQ-IFDIPKIDDGLTNAADLDLSEFERMKVE 237

Query: 238 RQISASLYAINGVQEYMDTVHDAAEAFWDLPPLCS 272
           RQISASLYAINGVQEYM+TV D+ E  WDLPPLCS
Sbjct: 238 RQISASLYAINGVQEYMETVQDSNETLWDLPPLCS 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146005|ref|XP_002325844.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222862719|gb|EEF00226.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 155/259 (59%), Positives = 193/259 (74%), Gaps = 8/259 (3%)

Query: 19  VNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDE 78
           V++  KFKG +R  S++KFVGVRQRPSGRWVAEIK TT+ IR+WLGTFETAEEAARAYDE
Sbjct: 3   VSKTSKFKGISRPSSSNKFVGVRQRPSGRWVAEIKYTTQNIRMWLGTFETAEEAARAYDE 62

Query: 79  AACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNK-KGCQQQSVEASATTTTTAYTPTST 137
           AACLLRGSNTRTNF T VS DSPLASRIRNL+NNK +  QQQS E +A  +T   +   T
Sbjct: 63  AACLLRGSNTRTNFITRVSLDSPLASRIRNLLNNKRRDKQQQSEEETAEVSTPPTSTIIT 122

Query: 138 ATSNSSCTSCSGV------ISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFELGSAQI 191
            ++ ++    S        +S +  S+SS + +   LFDDAYKPDLS  IE+F+  ++Q 
Sbjct: 123 TSAITTSCCSSCSSISSCGMSTDSYSNSSSVHETDILFDDAYKPDLSNLIEEFKWVTSQS 182

Query: 192 DHSWGSGNGVDQFSYTQELLDLPENGALPETTTDSEFAEFERMKVERQISASLYAINGVQ 251
           D SWG G   D F+++QE+LD P++   P  T+D EF+EF++MKVERQISASLYA+NGVQ
Sbjct: 183 DLSWGFGPVFDGFAFSQEVLDFPKSVVSP-GTSDLEFSEFDKMKVERQISASLYAMNGVQ 241

Query: 252 EYMDTVHDAAEAFWDLPPL 270
           EYM+T+HD  EA WDLPPL
Sbjct: 242 EYMETIHDPIEALWDLPPL 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560913|ref|XP_003548731.1| PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Glycine max]

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 152/267 (56%), Positives = 194/267 (72%), Gaps = 16/267 (5%)

Query: 19  VNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDE 78
           + + GK KGR+R+ + +KFVGVRQRPSGRWVAEIKDTT+KIR+WLGTFETAEEAARAYDE
Sbjct: 19  ITKGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDE 78

Query: 79  AACLLRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQ------------SVEASAT 126
           AACLLRGSNTRTNF T+VS DSPLASRIRNL+NN+KG ++Q                +  
Sbjct: 79  AACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGVKKQEDTNANANNAPAPKVTTTR 138

Query: 127 TTTTAYTPTSTATSNSSCTSCSGVISGELSSSSSDIIQDAQLFDDAYKPDLSKCIEDFEL 186
           + +T  + +++ ++++S  S +G    + S S+++  + + LFDDAYKPDLS C E+FE 
Sbjct: 139 SASTCTSTSTSTSTSTSSNSSNGNDKNDKSLSTAN-TRSSNLFDDAYKPDLSNCREEFES 197

Query: 187 GSAQIDHSWGSGNGVDQFSYTQELLDLPE-NGALPETTTDSEFAEFERMKVERQISASLY 245
           G  Q + SWG G   D+F   Q +LD+P+ +  L     D E +EFERMKVERQISASLY
Sbjct: 198 GH-QSNASWGFGTVFDRFPIAQ-ILDIPKIDDGLLTNAADLELSEFERMKVERQISASLY 255

Query: 246 AINGVQEYMDTVHDAAEAFWDLPPLCS 272
           AINGVQEYM+TV D+ +  WDLPPLCS
Sbjct: 256 AINGVQEYMETVQDSNDTLWDLPPLCS 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2183174	253	RAP2.11 "related to AP2 11" [A	0.836	0.909	0.355	6.2e-30
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.221	0.317	0.459	5.2e-10
TAIR|locus:2159068	211	LEP "LEAFY PETIOLE" [Arabidops	0.316	0.412	0.366	8.4e-10
UNIPROTKB|Q5MFV0	329	BIERF4 "BTH-induced ERF transc	0.261	0.218	0.361	1.4e-09
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.225	0.216	0.451	3.4e-09
TAIR|locus:2198978	256	AT1G80580 [Arabidopsis thalian	0.334	0.359	0.350	6.2e-09
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.24	0.385	0.397	7.7e-09
TAIR|locus:1005716457	150	RAP2.9 "related to AP2 9" [Ara	0.261	0.48	0.369	7.7e-09
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.221	0.322	0.459	2e-08
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.301	0.368	0.395	2.6e-08

TAIR|locus:2183174 RAP2.11 "related to AP2 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 91/256 (35%), Positives = 123/256 (48%)

Query:    24 KFKGRNRTKSN-SKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCL 82
             K K + ++K N +KFVGVRQRPSG+WVAEIKDTT+KIR+WLGTF              CL
Sbjct:     8 KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACL 67

Query:    83 LRGSNTRTNFDTNVSFDSPLASRIRNLVNNKKGCQQQSVEXXXXXXXXXXXXXXXXXXXX 142
             LRGSNTRTNF  +   +S L+ +IRNL++ K+  +QQ  +                    
Sbjct:    68 LRGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTAT 127

Query:   143 XXXXXXXXXXXXXXXXXXDIIQDAQLFDDAYKPDLSKCIEDFELGSAQIDHSWGSGNGVD 202
                                    A   ++ Y+PD S  I   E    Q+ +SW   +G +
Sbjct:   128 SLTTTTTTTTTT-----------AIPLNNVYRPD-SSVIGQPETEGLQLPYSWPLVSGFN 175

Query:   203 -QFSYTQELLDLPENGALPET-TTDSEFAEFERMKVERQISASLYAINGVQEYMDTVH-- 258
              Q    Q   +   +G L +  +TD      E   +ERQISASLYA+NG   Y D ++  
Sbjct:   176 HQIPLAQAGGET--HGHLNDHYSTDQHLGLAE---IERQISASLYAMNGANSYYDNMNAE 230

Query:   259 ----DAAEAFWDLPPL 270
                 D  +  WDLP L
Sbjct:   231 YAIFDPTDPIWDLPSL 246

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0035865 "cellular response to potassium ion" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0048528 "post-embryonic root development" evidence=IMP

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 28/61 (45%), Positives = 32/61 (52%)

Query:    36 KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNTRTNFDTN 95
             K+ GVRQRP G+W AEI+D  K  RVWLGTF                 RGS  + NF  N
Sbjct:    60 KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPEN 119

Query:    96 V 96
             V
Sbjct:   120 V 120

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2159068 LEP "LEAFY PETIOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 33/90 (36%), Positives = 49/90 (54%)

Query:    22 AGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXC 81
             + K K +   +  ++F+GVR+RP GR+ AEI+D T K R WLGTF               
Sbjct:     5 SSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAR 64

Query:    82 LLRGSNTRTNFDTNVSFDSPLASRIRNLVN 111
              +RG+  RTNF   V  D P +S + ++V+
Sbjct:    65 SMRGTRARTNF---VYSDMPPSSSVTSIVS 91

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

UNIPROTKB|Q5MFV0 BIERF4 "BTH-induced ERF transcriptional factor 4" [Oryza sativa Indica Group (taxid:39946)]

 Score = 137 (53.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query:    29 NRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNT 88
             +R +  +++ GVR+RP G+W AEI+D  K IRVWLGTF                +RG   
Sbjct:    89 SRRRKPAQYRGVRRRPWGKWAAEIRDPVKGIRVWLGTFTNAEAAALAYDDAARAIRGDRA 148

Query:    89 RTNFDTNVSFDS 100
             + NF +  + D+
Sbjct:   149 KLNFPSATTPDT 160

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IC

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 28/62 (45%), Positives = 35/62 (56%)

Query:    31 TKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNTRT 90
             T +  KF GVRQRP G+W AEI+D ++++RVWLGTF                LRG N   
Sbjct:    81 TTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAEL 140

Query:    91 NF 92
             NF
Sbjct:   141 NF 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2198978 AT1G80580 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
 Identities = 34/97 (35%), Positives = 45/97 (46%)

Query:    23 GKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCL 82
             G  +GR   +    F+GVR+RP GRW AEI+D   + R WLGTF                
Sbjct:   102 GVKRGRKMPQKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARR 161

Query:    83 LRGSNTRTNFDTNVSFDSPLA-----SRIRNLVNNKK 114
             LRG+  +TNF     F   +A     +R+R     KK
Sbjct:   162 LRGTKAKTNFVIPPLFPKEIAQAQEDNRMRQKQKKKK 198

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query:    30 RTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNTR 89
             R + N  + G+RQRP G+W AEI+D +K +RVWLGTF                +RG   +
Sbjct:    44 RERKNL-YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAK 102

Query:    90 TNF-DTNV 96
              NF +T V
Sbjct:   103 LNFPNTQV 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:1005716457 RAP2.9 "related to AP2 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 27/73 (36%), Positives = 37/73 (50%)

Query:    28 RNRTKSNSK-FVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGS 86
             RN   SN K + G+R R  G+WVAEI++  K+ R+WLG++                LRG 
Sbjct:    26 RNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGP 85

Query:    87 NTRTNFDTNVSFD 99
             + R NF   V  D
Sbjct:    86 SARLNFPEEVFKD 98

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 28/61 (45%), Positives = 34/61 (55%)

Query:    39 GVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNTRTNFDTNVSF 98
             GVR+RP GR+ AEI+D  KK RVWLGTF                LRG   +TNF + +S 
Sbjct:    14 GVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSL 73

Query:    99 D 99
             D
Sbjct:    74 D 74

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 34/86 (39%), Positives = 44/86 (51%)

Query:    29 NRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFXXXXXXXXXXXXXXCLLRGSNT 88
             N +    +F GVR+RP GR+ AEI+D  KK RVWLGTF                LRG   
Sbjct:    20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKA 79

Query:    89 RTNFDTNVSFDSPLASRIR-NLVNNK 113
             +TNF  + S  SP    +R N + N+
Sbjct:    80 KTNFPIDSS--SPPPPNLRFNQIRNQ 103

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6J9S1	RA211_ARATH	No assigned EC number	0.3968	0.8327	0.9051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-32
pfam00847	53	pfam00847, AP2, AP2 domain	1e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (292), Expect = 2e-33
 Identities = 39/60 (65%), Positives = 46/60 (76%)

Query: 36 KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN 95
          K+ GVRQRP G+WVAEI+D +K  RVWLGTF+TAEEAARAYD AA   RG + R NF  +
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  112 bits (283), Expect = 3e-32
 Identities = 39/59 (66%), Positives = 46/59 (77%)

Query: 35 SKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFD 93
          SK+ GVRQRP G+WVAEI+D +   R+WLGTF+TAEEAARAYD AA  LRGS+   NF 
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 29/54 (53%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 35 SKFVGVRQRPS-GRWVAEIKDTTKKI--RVWLGTFETAEEAARAYDEAACLLRG 85
          S + GVR     GRWVAEI+D  +K   R  LGTF T EEAARA   A   LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.77
PHA00280	121	putative NHN endonuclease	99.73
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.13
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.61

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=7e-20  Score=133.55  Aligned_cols=61  Identities=64%  Similarity=1.014  Sum_probs=56.3

Q ss_pred             CceEEEEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 043751           35 SKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN   95 (275)
Q Consensus        35 SgyrGV~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~NFp~~   95 (275)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++++|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899998777899999999996566799999999999999999999999999999999874

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.77  E-value=1.1e-18  Score=128.76  Aligned_cols=62  Identities=63%  Similarity=1.031  Sum_probs=57.1

Q ss_pred             ceEEEEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 043751           36 KFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTNVS   97 (275)
Q Consensus        36 gyrGV~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~NFp~~~~   97 (275)
                      +|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.++++++|.++++|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            58999878889999999997667779999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.73  E-value=4.9e-18  Score=141.18  Aligned_cols=75  Identities=13%  Similarity=0.110  Sum_probs=67.7

Q ss_pred             HHhhhhccccccCCCCCCC-CCCCceEEE-EECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhccCCCCCC
Q 043751           13 KACINQVNRAGKFKGRNRT-KSNSKFVGV-RQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAYDEAACLLRGSNTRT   90 (275)
Q Consensus        13 ~~NLR~~t~~~n~~Nr~r~-~ntSgyrGV-~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~   90 (275)
                      .+|||++++.+|++|++.+ +|+|||+|| |++..|||+|+|++.||.  ++||.|+++|+|+.||+ ++.+|||++|+.
T Consensus        44 i~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~--~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         44 LDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGKQ--HNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             HHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCEE--EEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            5899999999999999766 688999999 678889999999997776  88999999999999997 778999998864

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.13  E-value=7.5e-11  Score=83.91  Aligned_cols=52  Identities=40%  Similarity=0.522  Sum_probs=45.0

Q ss_pred             CceEEE-EECCCCcEEEEEecC---CCCcEEEecCCCCHHHHHHHHHHHHHhccCC
Q 043751           35 SKFVGV-RQRPSGRWVAEIKDT---TKKIRVWLGTFETAEEAARAYDEAACLLRGS   86 (275)
Q Consensus        35 SgyrGV-~~r~~GKW~A~I~~~---gk~kri~LGtFdT~EEAA~AYD~AA~~l~G~   86 (275)
                      |+|+|| +.+..++|+|+|++.   |++++++||.|++++||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            789999 567789999999983   2247899999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.61  E-value=3.9  Score=28.13  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             cEEEEEe--c--CCCCcEEEecCCCCHHHHHHHHHHHHHhc
Q 043751           47 RWVAEIK--D--TTKKIRVWLGTFETAEEAARAYDEAACLL   83 (275)
Q Consensus        47 KW~A~I~--~--~gk~kri~LGtFdT~EEAA~AYD~AA~~l   83 (275)
                      +|..+|.  .  .|+.++++-+-|.|..||..+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  2  56778899999999999999988876655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-05
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-05

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 37 FVGVRQRPSGRWVAEIKDTTKK-IRVWLGTFXXXXXXXXXXXXXXCLLRGSNTRTNFDTN 95
          + GVRQRP G++ AEI+D  K   RVWLGTF                +RGS    NF   
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62
Query: 96 V 96
          V
Sbjct: 63 V 63

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 37 FVGVRQRPSGRWVAEIKDTTKK-IRVWLGTFXXXXXXXXXXXXXXCLLRGSNTRTNFDTN 95
          + GVRQRP G++ AEI+D  K   RVWLGTF                +RGS    NF   
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 65
Query: 96 VS 97
          V+
Sbjct: 66 VN 67
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-29

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  105 bits (265), Expect = 1e-29
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 36 KFVGVRQRPSGRWVAEIKDTTKK-IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDT 94
           + GVRQRP G++ AEI+D  K   RVWLGTFETAE+AA AYD AA  +RGS    NF  
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 95 NV 96
           V
Sbjct: 62 RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.87
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	96.85
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	87.95

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.87  E-value=5e-23  Score=151.84  Aligned_cols=60  Identities=58%  Similarity=0.901  Sum_probs=56.4

Q ss_pred             ceEEEEECCCCcEEEEEecCCC-CcEEEecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 043751           36 KFVGVRQRPSGRWVAEIKDTTK-KIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN   95 (275)
Q Consensus        36 gyrGV~~r~~GKW~A~I~~~gk-~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~NFp~~   95 (275)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999987889999999999875 57899999999999999999999999999999999986

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=96.85  E-value=1e-05  Score=68.69  Aligned_cols=61  Identities=5%  Similarity=-0.105  Sum_probs=46.6

Q ss_pred             HHhhhhccccccCCCCCCCCCCCceEEEEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHH
Q 043751           13 KACINQVNRAGKFKGRNRTKSNSKFVGVRQRPSGRWVAEIKDTTKKIRVWLGTFETAEEAARAY   76 (275)
Q Consensus        13 ~~NLR~~t~~~n~~Nr~r~~ntSgyrGV~~r~~GKW~A~I~~~gk~kri~LGtFdT~EEAA~AY   76 (275)
                      .+|||++|+.+|.+++.+.......+||.....++|.+.|.+. +.  ++||.|+|.+|||++|
T Consensus        85 ~~NL~~~t~~eN~~~~~~~~~~~~~~g~~~~~~~k~~~vi~~~-~~--~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M           85 STNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVIS-PD--GIEKEYPSTKCACEEL  145 (174)
T ss_dssp             GGGEEEECHHHHHHHHHHHTCCCCHHHHHHHHHHTCCCEEEEC-TT--SCEEEESCHHHHHHHH
T ss_pred             HHHcEECCHHHHhhcccccCcccceeeeeeccCCCCceEEEEc-CC--ceEEeeCCHHHHHHHH
Confidence            4799999999999887544322235677334457799999987 54  6799999999999996

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=87.95  E-value=0.34  Score=36.81  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CCCCceEEE-EECCCCcEEEEEecCCCC
Q 043751           32 KSNSKFVGV-RQRPSGRWVAEIKDTTKK   58 (275)
Q Consensus        32 ~ntSgyrGV-~~r~~GKW~A~I~~~gk~   58 (275)
                      +..|||+|| |+++.+.|.|.-..+++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeE
Confidence            457999999 788889999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-27

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 97.8 bits (244), Expect = 4e-27
 Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 36 KFVGVRQRPSGRWVAEIKDTTKK-IRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDT 94
           + GVRQRP G++ AEI+D  K   RVWLGTFETAE+AA AYD AA  +RGS    NF  
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 95 NV 96
           V
Sbjct: 62 RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.87

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.4e-23  Score=152.20  Aligned_cols=60  Identities=57%  Similarity=0.887  Sum_probs=55.4

Q ss_pred             ceEEEEECCCCcEEEEEecCC-CCcEEEecCCCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 043751           36 KFVGVRQRPSGRWVAEIKDTT-KKIRVWLGTFETAEEAARAYDEAACLLRGSNTRTNFDTN   95 (275)
Q Consensus        36 gyrGV~~r~~GKW~A~I~~~g-k~kri~LGtFdT~EEAA~AYD~AA~~l~G~~A~~NFp~~   95 (275)
                      .||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||.+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599998878899999999875 457899999999999999999999999999999999975