Citrus Sinensis ID: 043757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MARQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC
cccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEEccccccccccccEEEEEEccEEEEEcEEEEccccccccccccccccccccccccccEEEEEEEccEEEEEEEEEcccccEEEEEEEEcEEEEEEEEEcccccccccEEcccccccEEEEccEEEccccEEEEccccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEccccccccccEEEEcEEEEEEEEEEcccccEEEEccccccEEcEEEEcEEEEEccccccccccccccccEEEEEEEEEccEEccccc
cccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHcccccEEEEEEEcEEEEEEcEEEcccccHHcccccccccccccccccccccEEEEccEEEEEEEEEEEccccccEEEEccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccccccccccccHccccccccccEccccc
MARQERFVVKAVLLLGLTFLSsvvqgaepnyslyfdvtkfgaeangdknnaQAFTETWAKacgsgapakvlipsgtfltgpvvfsgpcksaITVEVRGIVKATTdlkeyadgdwilfenidgllltgggtfdgqgaaswklkdsnpqhsatkcdllpisikfnhvnnSVVTGINSLNSKGFHILLVFCQnftasnlnitapdespntdgihLSLSSLVnitnskigtgddcvsighgstdisvsritcgpghgisvgslgnkpdemdvngiTVFNCTLItttnglriktkrgsaslKASRIFYENIImdkvknpiiidqnygakknepsrvkitdvhyknikgtsitnvgvnlncssvvpcdgveLVGVDLAFDvgsakkaeanlpfssscanaeakfegkispppc
MARQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLitttnglriktkrgsaslkasRIFYeniimdkvknpiiidqnygakknepsrvkITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAeanlpfssscanaeakfegkispppc
MARQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIdgllltgggtfdgqgAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC
*****RFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKL********ATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITA********GIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGS******************************
******FVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGS****EANLPFSSSCANAEAKFEGKISPPPC
MARQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCA***************
**RQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVG*************SC******FEGKIS***C
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MARQERFVVKAVLLLGLTFLSSVVQGAEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
P49062422 Exopolygalacturonase clon yes no 0.985 0.950 0.477 1e-101
P35339410 Exopolygalacturonase OS=Z N/A no 0.891 0.885 0.456 2e-84
Q05967396 Polygalacturonase OS=Nico N/A no 0.879 0.904 0.427 3e-83
Q39786407 Polygalacturonase OS=Goss N/A no 0.941 0.941 0.413 4e-83
Q39766407 Polygalacturonase OS=Goss N/A no 0.943 0.943 0.407 7e-83
P26216410 Exopolygalacturonase OS=Z N/A no 0.891 0.885 0.437 2e-81
P35338410 Exopolygalacturonase OS=Z N/A no 0.891 0.885 0.432 2e-80
Q40312421 Polygalacturonase OS=Medi N/A no 0.810 0.783 0.461 6e-79
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.874 0.944 0.397 9e-77
P35337397 Polygalacturonase OS=Bras N/A no 0.889 0.911 0.429 2e-76
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function desciption
 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/419 (47%), Positives = 265/419 (63%), Gaps = 18/419 (4%)

Query: 1   MARQERFVVKAVLLLGLTFLSSVVQG----------AEPNYSLYFDVTKFGAEANGDKNN 50
           +A+     V +++L+ L F S V  G          A       +D+TKFGA  +G  N 
Sbjct: 8   VAKANNINVGSLILMALVFGSCVANGEYLGGRRGLAANSGNPTVYDITKFGAVGDGSTNT 67

Query: 51  AQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYA 110
            +AF  TW + C S  PA +L+P GTFL GPV+F+GPCKS +TV V G + ATT    YA
Sbjct: 68  FKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVTVNVIGTIIATT--SGYA 125

Query: 111 DGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVV 170
             +W LFE +D L+LTG GTF G+G A WK      +    +C+L P S+KF ++ N  +
Sbjct: 126 TPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKK---VQCNLPPTSLKFRNMKNVEI 182

Query: 171 TGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDD 230
            GI+S+N+K FH+ LV  +N    N+ +TAP ESPNTDGIHLS +  V+I +S I TGDD
Sbjct: 183 NGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDD 242

Query: 231 CVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTK 290
           CVS+G GS +++V R+ CGPGHG+SVGSLG   +E DV+GI V NCT+I T NGLRIKT 
Sbjct: 243 CVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTW 302

Query: 291 RGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVG 350
            GS   KA  I +ENIIM  VKNPIIIDQNYG++  + S+V I+D+ +KNI+GT+IT   
Sbjct: 303 GGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSRGGD-SQVAISDILFKNIRGTTITKDV 361

Query: 351 VNLNCSSVVPCDGVELVGVDLAF--DVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407
           V + CS  VPC GV +V V+L +    G  KK+ +     + C NA   F GK+S P C
Sbjct: 362 VQIMCSKSVPCQGVNVVDVNLDYVGKTGGEKKSSSGGLVGALCDNANVIFGGKLSFPMC 420
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 7
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
224064464413 predicted protein [Populus trichocarpa] 0.963 0.949 0.538 1e-116
297743916426 unnamed protein product [Vitis vinifera] 0.987 0.943 0.513 1e-114
225437430411 PREDICTED: exopolygalacturonase clone GB 0.977 0.968 0.503 1e-109
449462487458 PREDICTED: polygalacturonase-like [Cucum 0.899 0.799 0.557 1e-109
449502091458 PREDICTED: polygalacturonase-like [Cucum 0.899 0.799 0.554 1e-108
224064462353 predicted protein [Populus trichocarpa] 0.855 0.985 0.568 1e-106
449520239453 PREDICTED: exopolygalacturonase clone GB 0.899 0.807 0.533 1e-105
225431792427 PREDICTED: exopolygalacturonase [Vitis v 0.918 0.875 0.508 1e-104
357442427407 Polygalacturonase [Medicago truncatula] 0.948 0.948 0.496 1e-104
356501890416 PREDICTED: exopolygalacturonase clone GB 0.899 0.879 0.532 1e-104
>gi|224064464|ref|XP_002301489.1| predicted protein [Populus trichocarpa] gi|222843215|gb|EEE80762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/418 (53%), Positives = 286/418 (68%), Gaps = 26/418 (6%)

Query: 8   VVKAVLLLGLTFLSSVVQGAEPNY-------SL---------YFDVTKFGAEANGDKNNA 51
           +  ++L+LGL  LS V  GA  ++       SL          FDVTK GA+A+   +NA
Sbjct: 3   IAGSILVLGLALLSCVADGALRHHIGLSDRRSLIDGSGAAVTVFDVTKHGAKADDKTDNA 62

Query: 52  QAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSA--ITVEVRGIVKATTDLKEY 109
           +AF +TW  AC SGAPAK++IP GTFLT PVVF GPCKS   I  EV+G VKATTDL EY
Sbjct: 63  EAFIQTWRAACDSGAPAKMVIPGGTFLTSPVVFQGPCKSTEPIVFEVQGNVKATTDLSEY 122

Query: 110 ADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSV 169
           +   WILFE IDGL L GGGTFDGQG+A WK  D    H   +C  LP SIK + V N+ 
Sbjct: 123 SSEQWILFEIIDGLTLNGGGTFDGQGSAVWKYNDC---HQNKECQPLPSSIKLSKVKNAF 179

Query: 170 VTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGD 229
           V  I+S++SK FH+ +  C + +  N+N+TAP  SPNTDGIH+S S  V++T+SKIGTGD
Sbjct: 180 VHEISSVDSKYFHMHVTSCNSISIHNINLTAPANSPNTDGIHISHSDGVHVTSSKIGTGD 239

Query: 230 DCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKT 289
           DC+SIG GST+I +S++ CGPGHG+SVGSLG   +E DV GI V NCTL  TTNG+RIK+
Sbjct: 240 DCISIGQGSTNILISQVFCGPGHGLSVGSLGKYKNEEDVRGIVVTNCTLFNTTNGVRIKS 299

Query: 290 KRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNV 349
              S   +A  I +++I MD VKNPIIIDQ YG++   PSRVKI++VHY+NIKGTS ++V
Sbjct: 300 YAASDPSQALNITFKDITMDSVKNPIIIDQKYGSRNGAPSRVKISNVHYQNIKGTSTSDV 359

Query: 350 GVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407
            V+ +CSS+VPC GVELV +DLA+ +G     +AN+P S+SC NA     G    P C
Sbjct: 360 AVSFSCSSLVPCQGVELVDIDLAY-IGQ----KANVPLSASCLNANIVKSGGKQNPGC 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743916|emb|CBI36886.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437430|ref|XP_002268540.1| PREDICTED: exopolygalacturonase clone GBGE184-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462487|ref|XP_004148972.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502091|ref|XP_004161540.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224064462|ref|XP_002301488.1| predicted protein [Populus trichocarpa] gi|222843214|gb|EEE80761.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449520239|ref|XP_004167141.1| PREDICTED: exopolygalacturonase clone GBGE184-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225431792|ref|XP_002272193.1| PREDICTED: exopolygalacturonase [Vitis vinifera] gi|296083328|emb|CBI22964.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357442427|ref|XP_003591491.1| Polygalacturonase [Medicago truncatula] gi|355480539|gb|AES61742.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501890|ref|XP_003519756.1| PREDICTED: exopolygalacturonase clone GBGE184-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2024680422 PGA4 "polygalacturonase 4" [Ar 0.985 0.950 0.453 1.9e-90
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.901 0.886 0.459 5.2e-81
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.911 0.833 0.410 5.3e-72
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.909 0.833 0.407 3.7e-71
TAIR|locus:2077402391 AT3G07820 [Arabidopsis thalian 0.882 0.918 0.411 5.5e-70
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.896 0.968 0.372 2.4e-67
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.891 0.905 0.399 2.4e-67
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.948 0.979 0.365 2.2e-66
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.906 0.555 0.405 3.6e-66
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.847 0.869 0.404 3.6e-66
TAIR|locus:2024680 PGA4 "polygalacturonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 190/419 (45%), Positives = 253/419 (60%)

Query:     1 MARQERFVVKAVLLLGLTFLSSVVQG----------AEPNYSLYFDVTKFGAEANGDKNN 50
             +A+     V +++L+ L F S V  G          A       +D+TKFGA  +G  N 
Sbjct:     8 VAKANNINVGSLILMALVFGSCVANGEYLGGRRGLAANSGNPTVYDITKFGAVGDGSTNT 67

Query:    51 AQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYA 110
              +AF  TW + C S  PA +L+P GTFL GPV+F+GPCKS +TV V G + ATT    YA
Sbjct:    68 FKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVTVNVIGTIIATTS--GYA 125

Query:   111 DGDWILFENIXXXXXXXXXXXXXXXAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVV 170
               +W LFE +                A WK      +    +C+L P S+KF ++ N  +
Sbjct:   126 TPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKK---VQCNLPPTSLKFRNMKNVEI 182

Query:   171 TGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDD 230
              GI+S+N+K FH+ LV  +N    N+ +TAP ESPNTDGIHLS +  V+I +S I TGDD
Sbjct:   183 NGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDD 242

Query:   231 CVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTK 290
             CVS+G GS +++V R+ CGPGHG+SVGSLG   +E DV+GI V NCT+I T NGLRIKT 
Sbjct:   243 CVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTW 302

Query:   291 RGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVG 350
              GS   KA  I +ENIIM  VKNPIIIDQNYG++  + S+V I+D+ +KNI+GT+IT   
Sbjct:   303 GGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSRGGD-SQVAISDILFKNIRGTTITKDV 361

Query:   351 VNLNCSSVVPCDGVELVGVDLAF--DVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407
             V + CS  VPC GV +V V+L +    G  KK+ +     + C NA   F GK+S P C
Sbjct:   362 VQIMCSKSVPCQGVNVVDVNLDYVGKTGGEKKSSSGGLVGALCDNANVIFGGKLSFPMC 420
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077402 AT3G07820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P49062PGLR1_ARATH3, ., 2, ., 1, ., 6, 70.47730.98520.9502yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-136
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-100
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-86
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-85
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 4e-82
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-76
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-74
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-23
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  396 bits (1019), Expect = e-136
 Identities = 198/415 (47%), Positives = 254/415 (61%), Gaps = 20/415 (4%)

Query: 1   MARQERFVVKAVLLLGLTFLSSVVQGAEPNYS--LYFDVTKFGAEANGDKNNAQAFTETW 58
           M  +   ++  V ++    LSS   G+    S    FDV  FGA ANG  ++++AF   W
Sbjct: 1   MEFRLLLLLVVVFIVNALVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAW 60

Query: 59  AKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADG-DWILF 117
             AC S     +LIP GT+  GPV F GPC +  ++     +KA TDL  Y  G DWI F
Sbjct: 61  KAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTFT--LKAATDLSRYGSGNDWIEF 118

Query: 118 ENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLN 177
             ++GL LTGGGTFDGQGAA+W     N       C LLP S+KF ++NN+VV GI S+N
Sbjct: 119 GWVNGLTLTGGGTFDGQGAAAWPF---NKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN 175

Query: 178 SKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHG 237
           SK FHI LV C+NF  S L I+AP +SPNTDGIH+  SS V I++S+IGTGDDC+SIG G
Sbjct: 176 SKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG 235

Query: 238 STDISVSRITCGPGHGISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRIKTKRGSASLK 297
           ++ ++++RI CGPGHGISVGSLG  P+E DV G+ V +CT   TTNG+RIKT   S    
Sbjct: 236 NSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKS 295

Query: 298 -ASRIFYENIIMDKVKNPIIIDQNY----GAKKNEPSRVKITDVHYKNIKGTSITNVGVN 352
            A+ + +ENI+M+ V NPIIIDQ Y      +   PS V ++D+++KNI+GTS + V V 
Sbjct: 296 AATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVL 355

Query: 353 LNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC 407
           L CS  VPC GV L  V L    G           SSSC N  AK+ G   PPPC
Sbjct: 356 LKCSRGVPCQGVYLQDVHLDLSSGEGGT-------SSSCENVRAKYIGTQIPPPC 403

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PLN02793443 Probable polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.89
PLN02218431 polygalacturonase ADPG 99.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PLN03003456 Probable polygalacturonase At3g15720 99.87
PLN02155394 polygalacturonase 99.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.87
PLN03010409 polygalacturonase 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.83
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.42
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.25
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.0
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.79
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.74
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.62
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.62
smart00656190 Amb_all Amb_all domain. 98.57
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.55
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.5
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.5
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.49
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.45
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.44
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.43
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.37
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.37
PLN02176340 putative pectinesterase 98.2
PLN02480343 Probable pectinesterase 98.17
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.15
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.13
smart00656190 Amb_all Amb_all domain. 98.0
PLN02497331 probable pectinesterase 97.98
PLN02634359 probable pectinesterase 97.9
PLN02682369 pectinesterase family protein 97.89
PRK10531422 acyl-CoA thioesterase; Provisional 97.78
PLN02773317 pectinesterase 97.77
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.76
PLN02665366 pectinesterase family protein 97.61
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.58
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.52
PLN02916502 pectinesterase family protein 97.5
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.47
PLN02304379 probable pectinesterase 97.45
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.45
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.43
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.42
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.4
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.35
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.35
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.34
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.33
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.33
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.3
PLN02197588 pectinesterase 97.27
PLN02432293 putative pectinesterase 97.26
PLN02301548 pectinesterase/pectinesterase inhibitor 97.26
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.25
PLN02671359 pectinesterase 97.24
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.24
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.23
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.16
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.09
PLN02314586 pectinesterase 97.03
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.65
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.28
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.97
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.9
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 95.21
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.79
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.78
PLN02480343 Probable pectinesterase 92.16
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 91.5
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 91.38
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.02
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 89.88
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 89.28
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.08
PLN02468565 putative pectinesterase/pectinesterase inhibitor 87.75
PLN02314586 pectinesterase 87.66
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 87.48
PRK10531422 acyl-CoA thioesterase; Provisional 87.37
PLN02197588 pectinesterase 86.36
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 82.96
PLN02773317 pectinesterase 82.28
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.3e-76  Score=575.51  Aligned_cols=363  Identities=40%  Similarity=0.749  Sum_probs=331.3

Q ss_pred             CceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCCcCCC
Q 043757           31 YSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYA  110 (407)
Q Consensus        31 ~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~~~~~  110 (407)
                      +++.+||+||||+|||.+|||+|||+|+++||+..+|++|+||+|+|++++|.|+|+|+|+++|+++|+|+++.+...|.
T Consensus        24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~  103 (394)
T PLN02155         24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFG  103 (394)
T ss_pred             CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEeeEEECcccccccc
Confidence            46899999999999999999999999987789988899999999999999999999898999999999999888777675


Q ss_pred             C-CceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeee
Q 043757          111 D-GDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQ  189 (407)
Q Consensus       111 ~-~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~  189 (407)
                      . ..|+.+.+.+|+.|.| |+|||+|+.||....     ....+..+|++|.|.+|++++|++++++|||.|++++..|+
T Consensus       104 ~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~-----~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~  177 (394)
T PLN02155        104 NSGYWILFNKVNRFSLVG-GTFDARANGFWSCRK-----SGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCT  177 (394)
T ss_pred             ccceeEEEECcCCCEEEc-cEEecCceeEEEccc-----CCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECee
Confidence            3 5799999999999999 999999999997531     22334457889999999999999999999999999999999


Q ss_pred             eEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceE
Q 043757          190 NFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVN  269 (407)
Q Consensus       190 nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~  269 (407)
                      |++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|++...+.|+
T Consensus       178 nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~  257 (394)
T PLN02155        178 NVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVE  257 (394)
T ss_pred             eEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEE
Confidence            99999999999988999999999999999999999999999999999999999999999999999999998765568999


Q ss_pred             EEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC----CCCceEEEEEEEEeEEEEe
Q 043757          270 GITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN----EPSRVKITDVHYKNIKGTS  345 (407)
Q Consensus       270 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~----~~~~~~i~nI~~~nI~~~~  345 (407)
                      ||+|+||+|.++.+|++||+|.++++|.|+||+|+||+++++++||.|++.|++...    ..+.+.|+||+|+||+++.
T Consensus       258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~  337 (394)
T PLN02155        258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS  337 (394)
T ss_pred             EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence            999999999999999999998765579999999999999999999999999976432    2345799999999999998


Q ss_pred             ccceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceecccceeCCCCC
Q 043757          346 ITNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFEGKISPPPC  407 (407)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~p~~~  407 (407)
                      ....++++.|.+..||+||+|+||+++.+.       + .+..+.|++++|.+.+++.|+||
T Consensus       338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-------~-~~~~~~C~n~~G~~~~~~~p~~c  391 (394)
T PLN02155        338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNK-------G-TPATSFCFNAVGKSLGVIQPTSC  391 (394)
T ss_pred             cCCceEEEEeCCCCCEEEEEEEeeEEEecC-------C-CccCcEEeccEeEEcccCCcccc
Confidence            767889999999999999999999999876       2 35688999999999999999999

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-18
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-14
1nhc_A336 Structural Insights Into The Processivity Of Endopo 9e-14
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-13
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-12
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-11
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 1e-08
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-07
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-06
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 157 PISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSS 216
           P  I+ N   N  +  ++ +NS  FH++      FTA    I  P  + NTDGI    S 
Sbjct: 151 PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK 210
Query: 217 LVNITNSKIGTGDDCVSI----GHGST-DISVSRITCGPGHGISVGSLGNKPDEMDVNGI 271
            + I  S I TGDD V+I    G   T +IS+     G GHG+S+GS     + M V  +
Sbjct: 211 NITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNV 265
Query: 272 TVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKNEPSRV 331
           TV +  +  TTNGLRIK+ + +A +  + + Y N++M  V  PI+ID  Y  +K E S V
Sbjct: 266 TVDDLKMNGTTNGLRIKSDKSAAGV-VNGVRYSNVVMKNVAKPIVIDTVY--EKKEGSNV 322
Query: 332 -KITDVHYKNI 341
              +D+ +K++
Sbjct: 323 PDWSDITFKDV 333
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-110
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-101
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-100
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 8e-95
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-92
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 6e-89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 3e-83
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 5e-74
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-26
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-24
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 8e-22
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-20
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-11
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 4e-11
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 2e-08
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  329 bits (845), Expect = e-110
 Identities = 80/378 (21%), Positives = 136/378 (35%), Gaps = 37/378 (9%)

Query: 35  FDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGT-FLTGPVVFSGPCKSAIT 93
            ++  +GA A+   +   A T  WA AC SG    V IPSG   L   V  +G       
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWA-ACKSGG--LVYIPSGNYALNTWVTLTGGSA--TA 75

Query: 94  VEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKC 153
           +++ GI+  T               + +    T  G   G G                  
Sbjct: 76  IQLDGIIYRTGTASGNMI-AVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGA------- 127

Query: 154 DLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLS 213
                 ++   V +  V  I  +++  FH  +  C +    N+ I   +     DGI + 
Sbjct: 128 ----RILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDVW 182

Query: 214 LSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNGITV 273
             S + + + ++   D+CV++   + +I V  I C    G ++GSLG      DV  I  
Sbjct: 183 -GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADT---DVTDIVY 238

Query: 274 FNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAK-KNEPSRVK 332
            N    ++     IK+  GS +   S +  EN I       + ID  + +        V+
Sbjct: 239 RNVYTWSSNQMYMIKSNGGSGT--VSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQ 296

Query: 333 ITDVHYKNIKGTSI---TNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSS 389
           + ++  KN KGT     T   + + CS   PC  + L  + +  + GS++          
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSE--------LY 348

Query: 390 SCANAEAKFEGKISPPPC 407
            C +A             
Sbjct: 349 LCRSAYGSGYCLKDSSSH 366
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.95
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.92
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.9
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.89
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.89
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.87
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.85
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.8
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.79
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.61
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.55
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.54
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.5
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.41
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.39
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.33
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.11
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.08
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.9
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.74
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.69
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.66
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.65
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.64
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.57
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.5
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.5
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.5
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.5
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.47
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.46
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.43
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.38
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.33
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.3
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.29
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.2
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.95
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.88
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.84
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.76
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.74
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.74
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.71
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.54
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.52
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.32
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.87
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.77
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.75
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.04
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.02
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.83
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.12
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 94.65
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.87
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.05
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.89
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 90.56
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 88.98
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 83.44
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.3e-64  Score=502.65  Aligned_cols=335  Identities=23%  Similarity=0.360  Sum_probs=297.9

Q ss_pred             CCCCCceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEeeeEeecCCCCceEEEEeeEEEEecCC
Q 043757           27 AEPNYSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDL  106 (407)
Q Consensus        27 ~~~~~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~~l~l~~~~~s~vtl~~~G~i~~~~~~  106 (407)
                      .|..+++.++|++|||+|||.+|||+|||+||+ +|++.+|++|+||+|+|++++|.|+    |+++|+++|+|+++.+.
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l~----s~v~l~l~gtL~~s~d~   94 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHLK----SNIELHVKGTIKFIPDP   94 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEECC----TTEEEEESSEEEECCCG
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEeC----CCcEEEEEEEEEecCCH
Confidence            445577899999999999999999999999975 6766678999999999999999998    99999999999999998


Q ss_pred             cCC-CC-------------CceEEEEeeeceEEecCeEEeCCC--CccccccCC--------------------------
Q 043757          107 KEY-AD-------------GDWILFENIDGLLLTGGGTFDGQG--AASWKLKDS--------------------------  144 (407)
Q Consensus       107 ~~~-~~-------------~~~i~~~~~~nv~I~G~G~idg~g--~~~w~~~~~--------------------------  144 (407)
                      .+| +.             .+||.+.+++||+|+|.|+|||+|  +.||+....                          
T Consensus        95 ~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  174 (448)
T 3jur_A           95 ERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERG  174 (448)
T ss_dssp             GGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHT
T ss_pred             HHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhccc
Confidence            887 32             368999999999999999999999  899975320                          


Q ss_pred             CCCCC---CCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeeeeEEEEeEEEECCCCCCCCceEEccCceeEEEE
Q 043757          145 NPQHS---ATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSLVNIT  221 (407)
Q Consensus       145 ~~~~~---~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~  221 (407)
                      .|...   ......||++|.|.+|+|++|+|++++|++.|++++..|+|++|+|++|.++  ++|+||||+.+|+||+|+
T Consensus       175 ~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~  252 (448)
T 3jur_A          175 TPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE  252 (448)
T ss_dssp             CCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEE
T ss_pred             CcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEE
Confidence            00000   0123568999999999999999999999999999999999999999999996  689999999999999999


Q ss_pred             eeEEecCCceEEecCC-----------ceeEEEEeEEE--cCCc-eEEEecCCCCCCCCceEEEEEEeEEEeCCCeeEEE
Q 043757          222 NSKIGTGDDCVSIGHG-----------STDISVSRITC--GPGH-GISVGSLGNKPDEMDVNGITVFNCTLITTTNGLRI  287 (407)
Q Consensus       222 n~~i~~~dD~i~i~s~-----------s~nI~I~n~~~--~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i  287 (407)
                      ||+|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||+|.++.+|++|
T Consensus       253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~GirI  328 (448)
T 3jur_A          253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERALRL  328 (448)
T ss_dssp             SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEEEE
T ss_pred             eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceEEE
Confidence            9999999999999987           89999999999  6677 8999998    457899999999999999999999


Q ss_pred             EEecCCCCceEEeEEEEEEEEecCCeeE-EEEeecCCCCCCCCceEEEEEEEEeEEEEeccceeEEEEeCCCCceecEEE
Q 043757          288 KTKRGSASLKASRIFYENIIMDKVKNPI-IIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSVVPCDGVEL  366 (407)
Q Consensus       288 ~~~~~~~~g~i~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~i~nI~~~nI~~~~~~~~~~~~~~~~~~~~~~i~~  366 (407)
                      |++.+. +|.|+||+|+||+++++.+++ .|++.|+... ....+.|+||+|+||+++. ...++.+.|.++.||+||+|
T Consensus       329 Kt~~g~-gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I~~  405 (448)
T 3jur_A          329 KTNSRR-GGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDILI  405 (448)
T ss_dssp             ECCTTT-CSEEEEEEEESCEEEEESSEEEEEESCGGGCC-CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEEEE
T ss_pred             EEEcCC-CceEeeEEEEEEEEECCccccEEEEeeccCCC-CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeEEE
Confidence            999864 699999999999999999988 9999997642 2345799999999999998 67899999999999999999


Q ss_pred             EeEEEEecC
Q 043757          367 VGVDLAFDV  375 (407)
Q Consensus       367 ~nv~~~~~~  375 (407)
                      +||++++..
T Consensus       406 ~nv~i~~~~  414 (448)
T 3jur_A          406 SDTIIEGAK  414 (448)
T ss_dssp             EEEEEESCS
T ss_pred             EEEEEEccc
Confidence            999999755
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 8e-72
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-70
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-63
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-60
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-57
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-57
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-55
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 9e-52
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  229 bits (584), Expect = 8e-72
 Identities = 84/371 (22%), Positives = 142/371 (38%), Gaps = 43/371 (11%)

Query: 35  FDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTF-LTGPVVFSGPCKSAIT 93
            ++  +GA A+   +   A T  WA AC SG    V IPSG + L   V  +G       
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWA-ACKSGG--LVYIPSGNYALNTWVTLTGGSA--TA 75

Query: 94  VEVRGIVKATTDLKEYADGDWILFENIDGLLL---TGGGTFDGQGAASWKLKDSNPQHSA 150
           +++ GI+  T      A G+ I   +     L   T  G   G G           +   
Sbjct: 76  IQLDGIIYRTGT----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGAR--- 128

Query: 151 TKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGI 210
                    ++   V +  V  I  +++  FH  +  C +    N+ I   +     DGI
Sbjct: 129 --------ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGI 179

Query: 211 HLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVNG 270
            +  S+ + + + ++   D+CV++   + +I V  I C    G ++GSLG      DV  
Sbjct: 180 DVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADT---DVTD 235

Query: 271 ITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYG-AKKNEPS 329
           I   N    ++     IK+  GS +   S +  EN I       + ID  +         
Sbjct: 236 IVYRNVYTWSSNQMYMIKSNGGSGT--VSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGD 293

Query: 330 RVKITDVHYKNIKGTSI---TNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLP 386
            V++ ++  KN KGT     T   + + CS   PC  + L  + +  + GS++       
Sbjct: 294 GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSE------- 346

Query: 387 FSSSCANAEAK 397
               C +A   
Sbjct: 347 -LYLCRSAYGS 356
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.88
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.87
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.85
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.79
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.76
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.65
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.63
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.74
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.56
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.55
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.42
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.28
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.12
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.01
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.85
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.84
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.7
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.53
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.39
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.34
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.33
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.24
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.65
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.43
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.77
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.5
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.9
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.91
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 92.06
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=6.6e-61  Score=476.09  Aligned_cols=337  Identities=23%  Similarity=0.318  Sum_probs=294.8

Q ss_pred             CceeEEeeeCCccCCCCcccHHHHHHHHHHHhcCCCCcEEEeCCceeeEe-eeEeecCCCCceEEEEeeEEEEecCCcCC
Q 043757           31 YSLYFDVTKFGAEANGDKNNAQAFTETWAKACGSGAPAKVLIPSGTFLTG-PVVFSGPCKSAITVEVRGIVKATTDLKEY  109 (407)
Q Consensus        31 ~~~~~~V~d~Ga~gdg~tddt~aiq~Al~~a~~~~~g~tV~~p~G~Y~~~-~l~l~~~~~s~vtl~~~G~i~~~~~~~~~  109 (407)
                      +.+++||+||||+|||.+|||+|||+|| +||+.  |++|+||+|+|++. +|.|+++  +++.|+++|+|+++.....|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai-~ac~~--gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~~~~   91 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAW-AACKS--GGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTASGN   91 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHH-HHHTB--TCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCCSSE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHH-HhcCC--CCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCCccC
Confidence            3579999999999999999999999998 57864  57999999999885 6999865  67899999999987665543


Q ss_pred             CCCceEEEEeeeceEEecCeEEeCCCCccccccCCCCCCCCCCCCCCCceeEEeccCcEEEEeeEEEcCCCceEEEeeee
Q 043757          110 ADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPISIKFNHVNNSVVTGINSLNSKGFHILLVFCQ  189 (407)
Q Consensus       110 ~~~~~i~~~~~~nv~I~G~G~idg~g~~~w~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~  189 (407)
                      . ..+....+.+.+.+.|.|+|||+|..||...           ..+|++|+|.+|+|++|++++++|++.|++++..|+
T Consensus        92 ~-~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-----------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~  159 (422)
T d1rmga_          92 M-IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-----------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCS  159 (422)
T ss_dssp             E-EEEEEEEEEEEECSSSCCEEECCTHHHHTTT-----------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEE
T ss_pred             E-EEeccCccEEEEEeecceEEecCcceecCCC-----------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccc
Confidence            3 3344455566677788899999999999743           246899999999999999999999999999999999


Q ss_pred             eEEEEeEEEECCCCCCCCceEEccCceeEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEecCCCCCCCCceE
Q 043757          190 NFTASNLNITAPDESPNTDGIHLSLSSLVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGSLGNKPDEMDVN  269 (407)
Q Consensus       190 nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~s~nI~I~n~~~~~~~gi~igs~~~~~~~~~v~  269 (407)
                      +++|+|++|.++ +.+|+||||+.+ +||+|+||+|.++||||+++++++||+|+|++|..+||++||+++.   ...++
T Consensus       160 ~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~  234 (422)
T d1rmga_         160 DGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVT  234 (422)
T ss_dssp             EEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEE
T ss_pred             cEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEE
Confidence            999999999986 457999999976 5999999999999999999999999999999999999999999864   46799


Q ss_pred             EEEEEeEEEeCCCeeEEEEEecCCCCceEEeEEEEEEEEecCCeeEEEEeecCCCCC-CCCceEEEEEEEEeEEEEec--
Q 043757          270 GITVFNCTLITTTNGLRIKTKRGSASLKASRIFYENIIMDKVKNPIIIDQNYGAKKN-EPSRVKITDVHYKNIKGTSI--  346 (407)
Q Consensus       270 ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~~~~~~i~nI~~~nI~~~~~--  346 (407)
                      ||+|+|+++.+...++++|++.+  .|.|+||+|+||+++++.+||.|++.|++... ..++.+|+||+|+||+++..  
T Consensus       235 nV~v~n~~~~~s~~g~~ik~~~g--~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~~~~v~isnIt~~Ni~GT~~~~  312 (422)
T d1rmga_         235 DIVYRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNWKGTEANG  312 (422)
T ss_dssp             EEEEEEEEEESSSCSEEEEEBBC--CEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEEEEEEEEEESCT
T ss_pred             EEEEEeEEEeCCCceEEEEEcCC--CceecceEEEEEEEecccccEEEecccCCCCCCCCCCeEEEEEEEEeEEEEecCC
Confidence            99999999999999999998765  58999999999999999999999999987654 34567999999999999874  


Q ss_pred             -cceeEEEEeCCCCceecEEEEeEEEEecCCCccccccCCCCceeeeeceeccc
Q 043757          347 -TNVGVNLNCSSVVPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAKFE  399 (407)
Q Consensus       347 -~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  399 (407)
                       ...++++.|++..||+||+|+||+++.+.       + ..+.+.|+|++|...
T Consensus       313 ~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~-------g-~~~~~~C~na~G~~~  358 (422)
T d1rmga_         313 ATRPPIRVVCSDTAPCTDLTLEDIAIWTES-------G-SSELYLCRSAYGSGY  358 (422)
T ss_dssp             TTSCSEEEECBTTBCEEEEEEEEEEEEESS-------S-SCEEEEEESEEEEST
T ss_pred             cccccEEEEcCCCCCCcceEEEEEEEEcCC-------C-CCcceEEECceeeEE
Confidence             35689999999999999999999999877       3 366789999998643
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure