Citrus Sinensis ID: 043869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRRIQGNG
cEEEHHHHHHHHHHHHHHHccccccccccccccccccEEEccccEEEEEEEcccccccEEEEEEccccccccEEEEccccccccccccEEEEEEcccEEEEcccccEEEEEEcccccccEEEEEccccEEEEcccccEEEccccccccccccccccccccEEEEccccccccccEEEEEEEccccEEEEEEcccccccccccccccEEEEccccEEEEEEEEccEEEEcEEEEEEEcccccEEEEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccEEccccccccccEEcccccccccccEEEEccccccccccEEEccccHHHHHHHHHccccEEEEEEccccEEEcccccccEEEccccccEEEEEEEccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHEEEEEEcccccccccccc
ccHHHHHHHHHHHccccEEEEEcccccccEEEEccccEEEccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEcccccccccEEEEEEcccEEEEEcccccEEEccccccccccEEEEcccccEEEEcccccEEEEEccccccccccccccccccEEEEcccccccccccEEEEEccccccHHHHHccccccccccEEEccccccccccEEEEEEEEcccEEEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccccccHcccccccEEcccccccccccccccccccHHHHccccEEcccccccccccEEEcccccccccHHHHHHHccHHHHHHHHHcccccEEEEEEcccccccccEEEEEcccHHHHHHHHHccccEEEEEEHHHHcccccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MHSIILFILSsgcftaaaqkkhsnisigsslsptgnsswrspsglyafgfypqrngsrYYVGVFLAgipektvvwtanrdnppvssnatlmfnSEGRIvlrsgeqgqnsiiadnsqsassasmldsgsfvlhnsdgkviwqtfdhptdtllptqrlsagtelcsgisetdpstgkfrlkmqndgnlvqypkntpdtaplnldknghlfllnstgfniknlteeetpiQGMMYLMKIDSDGIFRLYSYNLrwqnstwsevwpstsekcdpiglcgfnsfcvlndqtpnctclpgfvaiskgnwtagcernytaescgnKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALykneeckmqrlplrfgkrnlrdsditfvkvddatssspqapfsiegnkkglWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSyrriqgng
MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALykneeckmqrlplrfgkrnlrdsditfvkvddatssspqapfsiegnkkglWKNIVIICLFVTVVILISVVTFGIFIYRyrvgsyrriqgng
MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQnsiiadnsqsassasmldsgsFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRRIQGNG
***IILFILSSGCFTAAA************************SGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTAN**************************************************FVLHNSDGKVIWQTFDHPTDTLLPTQRL******************************************LNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKV**************EGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRR*****
MHSIILFILSSGCFTAAAQKKHSNISIG***SP****SWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCE**********KAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDA********************NIVIICLFVTVVILISVVTFGIFIYRYRV**********
MHSIILFILSSGCFTAAAQKKHSNISIGS*********WRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIA***********LDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTW********EKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRRIQGNG
MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGS********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISKGNWTAGCERNYTAESCGNKAIQELENTNWEDVSYNVLSEITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRRIQGNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
Q39086 843 Receptor-like serine/thre yes no 0.72 0.384 0.289 8e-36
P17840435 S-locus-specific glycopro N/A no 0.711 0.735 0.286 3e-34
Q39202 832 G-type lectin S-receptor- no no 0.897 0.485 0.260 1e-33
O64770 804 G-type lectin S-receptor- no no 0.933 0.522 0.267 8e-32
P17801 817 Putative receptor protein N/A no 0.822 0.452 0.277 5e-31
O64780 814 G-type lectin S-receptor- no no 0.886 0.490 0.276 6e-31
O64778 807 G-type lectin S-receptor- no no 0.88 0.490 0.286 7e-31
O81905 850 Receptor-like serine/thre no no 0.728 0.385 0.280 1e-30
O64776 792 G-type lectin S-receptor- no no 0.724 0.411 0.293 1e-30
Q9S972 847 Receptor-like serine/thre no no 0.733 0.389 0.273 6e-30
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function desciption
 Score =  152 bits (383), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 175/363 (48%), Gaps = 39/363 (10%)

Query: 25  ISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPV 84
           +S   SL+ + N +  SPS ++  GF+   + SR+Y+G++   IP +T VW ANRDNP  
Sbjct: 30  LSATESLTISSNKTIISPSQIFELGFFNPASSSRWYLGIWYKIIPIRTYVWVANRDNPLS 89

Query: 85  SSNATLMFNSEGRIVLRSGEQG--QNSIIADNSQSASSASMLDSGSFVLHNSDGKVIWQT 142
           SSN TL  +    ++    ++     +I   + +S  +A +LD+G+F+L +S+ +++WQ+
Sbjct: 90  SSNGTLKISGNNLVIFDQSDRPVWSTNITGGDVRSPVAAELLDNGNFLLRDSNNRLLWQS 149

Query: 143 FDHPTDTLLPTQRLSAGTE------LCSGISETDPSTGKFRLKMQNDGNLVQYPKN---- 192
           FD PTDTLL   +L    +      L S  +  DPS+G+F  K++      ++P+     
Sbjct: 150 FDFPTDTLLAEMKLGWDQKTGFNRILRSWKTTDDPSSGEFSTKLETS----EFPEFYICS 205

Query: 193 ----TPDTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIF-RLY-- 245
                  + P N  +   +       + + N T  +  +    Y  +I+   ++ RLY  
Sbjct: 206 KESILYRSGPWNGMRFSSVPGTIQVDYMVYNFTASKEEV---TYSYRINKTNLYSRLYLN 262

Query: 246 ----SYNLRWQNST--WSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCTCLPGFVAISK 299
                  L W  +T  W ++W S  + CD   +CG   +C  N   PNC C+ GF  +++
Sbjct: 263 SAGLLQRLTWFETTQSWKQLWYSPKDLCDNYKVCGNFGYCDSN-SLPNCYCIKGFKPVNE 321

Query: 300 GNW-----TAGCERNYTAESCGNKAIQELENTNWEDVSYNVLS-EITKEKCKQACLEDCN 353
             W     +AGC R       G      L+     D +  ++  EI  + CK+ CLEDCN
Sbjct: 322 QAWDLRDGSAGCMRKTRLSCDGRDGFTRLKRMKLPDTTATIVDREIGLKVCKERCLEDCN 381

Query: 354 CEA 356
           C A
Sbjct: 382 CTA 384
Involved in the regulation of cellular expansion and differentiation. Mediates subcellular relocalization of PUB9 from nucleus to plasma membrane in a protein-phosphorylation-dependent manner. May be involved in the abscisic acid-mediated signaling pathway, at least during germination.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2 Back     alignment and function description
>sp|O64770|Y1649_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61490 OS=Arabidopsis thaliana GN=At1g61490 PE=3 SV=1 Back     alignment and function description
>sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2 Back     alignment and function description
>sp|O64780|Y1614_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61400 OS=Arabidopsis thaliana GN=At1g61400 PE=2 SV=4 Back     alignment and function description
>sp|O64778|Y1142_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61420 OS=Arabidopsis thaliana GN=At1g61420 PE=2 SV=2 Back     alignment and function description
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description
>sp|O64776|Y1144_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g61440 OS=Arabidopsis thaliana GN=At1g61440 PE=3 SV=2 Back     alignment and function description
>sp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis thaliana GN=SD16 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
255582003 817 ATP binding protein, putative [Ricinus c 0.982 0.541 0.543 1e-135
255582007 783 ATP binding protein, putative [Ricinus c 0.982 0.564 0.541 1e-133
359477040 774 PREDICTED: G-type lectin S-receptor-like 0.946 0.550 0.535 1e-126
225431551 768 PREDICTED: G-type lectin S-receptor-like 0.942 0.552 0.543 1e-126
296088588 652 unnamed protein product [Vitis vinifera] 0.942 0.650 0.536 1e-124
359477044 768 PREDICTED: G-type lectin S-receptor-like 0.94 0.550 0.533 1e-122
147857244 718 hypothetical protein VITISV_039750 [Viti 0.933 0.584 0.532 1e-120
225431549 772 PREDICTED: G-type lectin S-receptor-like 0.942 0.549 0.525 1e-120
147838246 760 hypothetical protein VITISV_031648 [Viti 0.942 0.557 0.523 1e-120
147857245 726 hypothetical protein VITISV_039751 [Viti 0.915 0.567 0.513 1e-115
>gi|255582003|ref|XP_002531799.1| ATP binding protein, putative [Ricinus communis] gi|223528565|gb|EEF30587.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 256/471 (54%), Positives = 323/471 (68%), Gaps = 29/471 (6%)

Query: 1   MHSIILFILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYY 60
           M SI  F+  S    AAAQ++ +NIS+GSSL+PT NSSW SPSGLYAFGFY Q NG  Y 
Sbjct: 10  MASISFFLFLSSLIKAAAQQRQTNISLGSSLTPTKNSSWLSPSGLYAFGFYQQGNG--YA 67

Query: 61  VGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASS 120
           VGVFLAG P+KTVVWTANRD+PPVS + TL+F S+   VL+S     +S+     QSASS
Sbjct: 68  VGVFLAGAPQKTVVWTANRDDPPVSKDVTLLFTSDSGFVLQSASGQNSSVFISADQSASS 127

Query: 121 ASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKM 180
           A++ DSG+FVL+NS+  +IWQ+FD+P DTLLPTQRL AG EL S +S TD STG FRLKM
Sbjct: 128 AALFDSGNFVLYNSERDIIWQSFDNPIDTLLPTQRLEAGNELISSVSATDHSTGIFRLKM 187

Query: 181 QNDGNLVQYPKNTPDTAP----------------LNLDKNGHLFLLNSTGFNIKNLTEEE 224
           Q+DGNLVQYP  T DTA                 LNLD +G L+LLN+TGFNI+N+TE  
Sbjct: 188 QDDGNLVQYPVRTLDTAAFAYWASGTNGAGDNVTLNLDHDGRLYLLNNTGFNIRNITEGG 247

Query: 225 TPIQGMMYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTSEKCDPIGLCGFNSFCVLNDQ 284
            P+Q  +Y++++D DGIFRLYSY+L+ +N  WS +  ST ++C P GLCG NS+C+LNDQ
Sbjct: 248 FPVQETIYMIRLDFDGIFRLYSYDLK-ENGNWSVLHSSTDDRCAPKGLCGLNSYCILNDQ 306

Query: 285 TPNCTCLPGFVAISKGNWTAGCERNYTAESCG----NKAIQELENTNWEDVSYNVLSEIT 340
            P C CLPGF  +S+GNWTAGCERN   ESC     +  IQEL NT W D +Y VLS   
Sbjct: 307 EPECICLPGFGFVSEGNWTAGCERNSITESCKGDNVSNRIQELTNTVWLDNTYFVLSSYN 366

Query: 341 KEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQAPF 400
           KE C++ACLEDCNC+AA Y + EC+ Q LPLR+G+R+LRDS++  +KV  + S+    P 
Sbjct: 367 KEDCEKACLEDCNCDAAFYNSGECRKQGLPLRYGRRDLRDSNLALIKVGRSVSN----PN 422

Query: 401 SIE--GNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRVGSYRRIQGN 449
            IE    KK   K ++I+   V     + +   GI IYRY V +Y+RI  N
Sbjct: 423 IIEPIKKKKEPGKVLLIVSASVIGFGFLVLTVIGIMIYRYHVKAYKRISSN 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582007|ref|XP_002531801.1| ATP binding protein, putative [Ricinus communis] gi|223528567|gb|EEF30589.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359477040|ref|XP_002275651.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431551|ref|XP_002275615.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088588|emb|CBI37579.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477044|ref|XP_002275760.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147857244|emb|CAN79206.1| hypothetical protein VITISV_039750 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431549|ref|XP_002275592.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838246|emb|CAN72121.1| hypothetical protein VITISV_031648 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147857245|emb|CAN79207.1| hypothetical protein VITISV_039751 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:2197744 807 AT1G61420 [Arabidopsis thalian 0.904 0.504 0.285 3e-32
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.395 0.211 0.303 2.1e-30
TAIR|locus:2197714 792 AT1G61440 [Arabidopsis thalian 0.897 0.510 0.268 8.2e-29
TAIR|locus:2197664 804 AT1G61490 [Arabidopsis thalian 0.377 0.211 0.3 2.4e-28
TAIR|locus:2197709 809 AT1G61480 [Arabidopsis thalian 0.353 0.196 0.302 2e-26
TAIR|locus:2200888 804 AT1G61500 [Arabidopsis thalian 0.371 0.207 0.315 1.3e-25
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.404 0.214 0.311 2.1e-25
TAIR|locus:2200923 802 AT1G61550 [Arabidopsis thalian 0.877 0.492 0.275 2.2e-25
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.4 0.212 0.324 3.9e-25
TAIR|locus:2197729 805 SD1-29 "S-domain-1 29" [Arabid 0.373 0.208 0.313 1.2e-24
TAIR|locus:2197744 AT1G61420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 362 (132.5 bits), Expect = 3.0e-32, P = 3.0e-32
 Identities = 132/463 (28%), Positives = 205/463 (44%)

Query:     7 FILSSGCFTAAAQKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLA 66
             F +SS   ++A   K S + IG +LS        S +G Y  GF+   N    YVG++  
Sbjct:    17 FFISS---SSAGITKESPLPIGQTLS--------SSNGFYELGFFNFNNSQNQYVGIWFK 65

Query:    67 GIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQXXXXXXXXXXXXXXXXXXX 126
             GI  + VVW ANR+ P   S A L  ++ G ++L +G+ G                    
Sbjct:    66 GIIPRVVVWVANREKPVTDSTANLAISNNGSLLLFNGKHGVAWSSGEALVSNGSRAELSD 125

Query:   127 XX--FVLHNSDGKVIWQTFDHPTDTLLPTQ----RLSAGTE--LCSGISETDPSTGKFRL 178
                  V+ N  G+ +WQ+FDH  DT+LP+      L+ G +  L S  S TDPS G F L
Sbjct:   126 TGNLIVIDNFSGRTLWQSFDHLGDTMLPSSTLKYNLATGEKQVLSSWKSYTDPSVGDFVL 185

Query:   179 KM--QNDGNLVQYPKNTP--DTAPLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGMM-YL 233
             ++  Q    ++    +TP   + P    +   + L++ T F      +++T   G + YL
Sbjct:   186 QITPQVPTQVLVTKGSTPYYRSGPWAKTRFTGIPLMDDT-FTGPVSVQQDTNGSGSLTYL 244

Query:   234 MKIDSDGIFRLYS---YNLRWQNST-WSEVWPSTSEKCDPIGLCGFNSFCVLNDQTPNCT 289
              + D      L S     L W N T W   + +    CD  G+CG    CV     P CT
Sbjct:   245 NRNDRLQRTMLTSKGTQELSWHNGTDWVLNFVAPEHSCDYYGVCGPFGLCV-KSVPPKCT 303

Query:   290 CLPGFVAI-----SKGNWTAGCERNYTAESCGNKAIQELENTNWEDVS-------YNVLS 337
             C  GFV        +GNWT GC R  T   C   +  +  N  +  V+       Y   S
Sbjct:   304 CFKGFVPKLIEEWKRGNWTGGCVRR-TELYCQGNSTGKYANV-FHPVARIKPPDFYEFAS 361

Query:   338 EITKEKCKQACLEDCNCEAALYKNEECKMQRLPLRFGKRNLRDSDITFVKVDDATSSSPQ 397
              +  E+C+++CL +C+C A  Y      +  +      ++L D+ + F +  +  S    
Sbjct:   362 FVNVEECQKSCLHNCSCLAFAY------IDGIGCLMWNQDLMDA-VQFSEGGELLSIR-L 413

Query:   398 APFSIEGNKKGLWKNIVIICLFVTVVILISVVTFGIFIYRYRV 440
             A   + GNK+   K I    + +++V++I+ V F  F +RYRV
Sbjct:   414 ARSELGGNKRK--KAITASIVSLSLVVIIAFVAF-CF-WRYRV 452
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004713 "protein tyrosine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0048544 "recognition of pollen" evidence=IEA
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197714 AT1G61440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197664 AT1G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197709 AT1G61480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200888 AT1G61500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200923 AT1G61550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197729 SD1-29 "S-domain-1 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034863001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (775 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 1e-24
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 6e-17
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 1e-16
pfam00954110 pfam00954, S_locus_glycop, S-locus glycoprotein fa 6e-07
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 1e-04
pfam0827666 pfam08276, PAN_2, PAN-like domain 0.001
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information 
 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 8/110 (7%)

Query: 70  EKTVVWTANRDNPPVSSNATLMFNSEGRIVL--RSGEQGQNSIIADNSQSASSASMLDSG 127
            +TVVW ANR NP   S+ TL+  S+G +VL   +G    +S  +    S   A + D G
Sbjct: 1   NQTVVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTSGKG-SGCVAVLQDDG 59

Query: 128 SFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTE-----LCSGISETDPS 172
           + VL+++ GKV+WQ+FDHPTDTLLP Q+           L S  S TDPS
Sbjct: 60  NLVLYDNSGKVLWQSFDHPTDTLLPGQKDGNVVIGGSRRLTSWKSNTDPS 109

These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.95
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.92
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.9
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.8
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.51
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.49
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.27
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.73
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.67
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.65
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.46
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 97.92
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 95.22
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 94.46
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 94.29
PF0827771 PAN_3: PAN-like domain; InterPro: IPR006583 PAN do 90.91
smart0060594 CW CW domain. 89.74
PF04478154 Mid2: Mid2 like cell wall stress sensor; InterPro: 88.98
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 88.67
cd0109980 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr 87.89
PF0764542 EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 87.59
cd0005336 EGF Epidermal growth factor domain, found in epide 87.34
PF15102146 TMEM154: TMEM154 protein family 86.35
smart0017939 EGF_CA Calcium-binding EGF-like domain. 82.08
PTZ0038296 Variant-specific surface protein (VSP); Provisiona 80.63
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.95  E-value=1.5e-28  Score=209.35  Aligned_cols=102  Identities=46%  Similarity=0.740  Sum_probs=74.1

Q ss_pred             CCcEEEEecCCCCCCC--CccEEEEecCCcEEEEeCCCCceEEeecCC--C--CccEEEEecCCCeEEEecCCeeEEeec
Q 043869           70 EKTVVWTANRDNPPVS--SNATLMFNSEGRIVLRSGEQGQNSIIADNS--Q--SASSASMLDSGSFVLHNSDGKVIWQTF  143 (450)
Q Consensus        70 ~~tvVW~ANr~~Pv~~--~~~~L~l~~~G~LvL~d~~~g~~vW~st~~--~--~~~~a~LldsGNlVL~~~~~~~lWQSF  143 (450)
                      ++||||+|||+.|+.+  ...+|.|+.||+|+|.+. .++.+|.+..+  .  .+..|.|+|+|||||+|..+.+|||||
T Consensus         1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~-~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf   79 (114)
T PF01453_consen    1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDS-NGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSF   79 (114)
T ss_dssp             ---------TTEEEEECETTEEEEEETTSEEEEEET-TTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEEST
T ss_pred             CcccccccccccccccccccccceECCCCeEEEEcC-CCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeec
Confidence            3699999999999953  348999999999999998 88899944244  2  478999999999999999999999999


Q ss_pred             CCCCCccCCCcccCC----C--CeEEeccCCCCCC
Q 043869          144 DHPTDTLLPTQRLSA----G--TELCSGISETDPS  172 (450)
Q Consensus       144 d~PTDTlLpgq~L~~----~--~~L~S~~s~~dps  172 (450)
                      ||||||+||+|+|+.    +  ..|+||++.+|||
T Consensus        80 ~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   80 DYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             TSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             CCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            999999999999987    3  3599999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins Back     alignment and domain information
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins Back     alignment and domain information
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium Back     alignment and domain information
>PF15102 TMEM154: TMEM154 protein family Back     alignment and domain information
>smart00179 EGF_CA Calcium-binding EGF-like domain Back     alignment and domain information
>PTZ00382 Variant-specific surface protein (VSP); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 9e-16
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 2e-04
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 9e-12
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 3e-06
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 1e-11
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 1e-06
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 6e-05
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 2e-11
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 3e-09
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 3e-11
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 5e-07
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 1e-10
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 6e-10
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 3e-09
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 2e-06
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 4e-09
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 6e-05
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 6e-09
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 4e-08
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 1e-08
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 2e-08
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 3e-08
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
 Score = 76.2 bits (186), Expect = 9e-16
 Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)

Query: 23  SNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVG--VFLAGIPEKTVVWTANRD 80
           S +    +LS        SP+  +        N      G  V++A   +        R+
Sbjct: 15  SVLPAYQTLSA--GQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRN 72

Query: 81  NPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQS-ASSASMLDSGSFVLHNSDGKVI 139
                +              R      NS    N Q   +   + D G+ VL +S     
Sbjct: 73  KKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWN 132

Query: 140 WQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNLVQYPKNTPDTAPL 199
                      + +  L+ G+EL  G+       G  +L  Q DGNLV Y  N   T   
Sbjct: 133 GTPAIPLVPGAIDSLLLAPGSELVQGVV---YGAGASKLVFQGDGNLVAYGPNGAATWNA 189

Query: 200 NLDKNGHLFLLNSTGFNIKNLTEEETPI-----QGM-MYLMKIDSDGIFRLYSYNLRWQN 253
                G +  +     N+         +      G    ++++ ++G   +      W  
Sbjct: 190 GTQGKGAVRAVFQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKPVWAR 249

Query: 254 STWSEVWPSTSEKCDPIGLCGFNSF 278
             +   +    +           ++
Sbjct: 250 FGFQPTYRHIRKINPDQKPIDIWTW 274
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 111 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.83
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.82
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.81
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.78
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.75
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.71
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.63
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.61
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.59
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.59
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.54
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.53
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.47
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.44
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.35
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.29
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.25
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.2
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.18
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.18
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 99.06
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.01
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 91.92
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 91.62
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 91.27
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 87.87
2jwa_A44 Receptor tyrosine-protein kinase ERBB-2; transmemb 85.79
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 82.79
1edm_B39 Factor IX; epidermal growth factor, EGF, calcium- 80.54
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=5e-42  Score=334.62  Aligned_cols=217  Identities=17%  Similarity=0.244  Sum_probs=172.1

Q ss_pred             cccccccCCCCcccCCCCCeEEeCCCeEEEEEEeCCCCCeeEEEEEEeecCCCcEEEEecCCCCCCCC----ccEEEEec
Q 043869           19 QKKHSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSS----NATLMFNS   94 (450)
Q Consensus        19 ~~~~~~i~~g~~l~~~~~~~l~S~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~tvVW~ANr~~Pv~~~----~~~L~l~~   94 (450)
                      +++.++|.+|++|.++  ++|+|++|.|+||||+++   +.||   |+  +.+ +||+|||++|+.++    +++|+|+.
T Consensus        11 ~~~~~~l~~g~~l~~~--~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~   79 (276)
T 3m7h_A           11 GVGTSVLPAYQTLSAG--QYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAF   79 (276)
T ss_dssp             CTTSSEECTTEEBCTT--CEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEE
T ss_pred             cccCCEecCCCEecCC--CEEEcCCCcEEEEEECCC---CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEeC
Confidence            3456899999999865  999999999999999544   3565   66  677 99999999999864    78999999


Q ss_pred             CCcEEE--EeCCCCceEEeecCCC--------CccEEEEecCCCeEEEecCCeeEEeecCCCCCccCCCcc----cCCCC
Q 043869           95 EGRIVL--RSGEQGQNSIIADNSQ--------SASSASMLDSGSFVLHNSDGKVIWQTFDHPTDTLLPTQR----LSAGT  160 (450)
Q Consensus        95 ~G~LvL--~d~~~g~~vW~st~~~--------~~~~a~LldsGNlVL~~~~~~~lWQSFd~PTDTlLpgq~----L~~~~  160 (450)
                      ||+|+|  .|+ +|.+|| ++++.        .++.|+|+|+|||||+|  +.+||||  |||||+||||+    |..|+
T Consensus        80 ~G~Lvl~~~~~-~~~~vW-st~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~~~lWqS--~ptdtlLpg~~~~~~l~~g~  153 (276)
T 3m7h_A           80 YVQYGAFLDDY-SRRRVW-LTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--SLALWNG--TPAIPLVPGAIDSLLLAPGS  153 (276)
T ss_dssp             EESSSEEEEEG-GGTEEE-EECCCCCCCTTHHHHEEEEECTTSCEEEEE--EEEEEES--CTTSCCCCSCTTCEEECSSE
T ss_pred             CCcEEEEEeCC-CCCEEE-EeCCCcccccccCCceEEEEeCCCCEEecC--CceeeCc--ccccccccccccccccccCc
Confidence            999999  888 889999 65542        24689999999999998  7899999  99999999999    77888


Q ss_pred             eEEeccCCCCCCCCceEEEecCCCceeEcCC--CCCCC--------cceeecCCceEEEEecCCcEEEEeeeccCCCCce
Q 043869          161 ELCSGISETDPSTGKFRLKMQNDGNLVQYPK--NTPDT--------APLNLDKNGHLFLLNSTGFNIKNLTEEETPIQGM  230 (450)
Q Consensus       161 ~L~S~~s~~dps~G~f~l~~~~~g~~~l~~~--~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  230 (450)
                      +|   ++.+||++|.|+++||++|++++|..  ..+|.        ..+.++.+|++++.+.++..++.. . . ... .
T Consensus       154 ~L---~S~~dps~G~fsl~l~~dGnlvLy~~~~~~yW~Sgt~~~~~~~l~l~~dGnLvl~d~~~~~vWsS-~-t-~~~-~  226 (276)
T 3m7h_A          154 EL---VQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS-H-T-GGH-A  226 (276)
T ss_dssp             EE---CTTCEEEETTEEEEECTTSCEEEECTTSSEEEECCCTTTTCCEEEECTTSCEEEECTTSCEEEEC-S-C-TTC-T
T ss_pred             cc---ccCCCCCCceEEEeecCCceEEEEeCCCeEEEECCCCCCccEEEEEcCCCeEEEEeCCCcEEEEe-c-C-CCC-C
Confidence            98   55789999999999999999988721  11111        357788889998887655333321 1 1 111 2


Q ss_pred             EEEEEEccCCcEEEEEecccCCCCceEEEccccC
Q 043869          231 MYLMKIDSDGIFRLYSYNLRWQNSTWSEVWPSTS  264 (450)
Q Consensus       231 ~~r~~Ld~dG~lr~y~~~~~~~~~~W~~~w~~p~  264 (450)
                      .+|++||.||+|++|.|.     ..|..++..|.
T Consensus       227 ~~rl~Ld~dGnLvly~~~-----~~Wqsf~~~P~  255 (276)
T 3m7h_A          227 SAVLRLQANGSIAILDEK-----PVWARFGFQPT  255 (276)
T ss_dssp             TCEEEECTTSCEEEEEEE-----EEEESSSCCTT
T ss_pred             CEEEEEcCCccEEEEcCC-----CeEEccCccCC
Confidence            379999999999999873     35777776664
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 450
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 3e-15
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 2e-10
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 2e-13
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 1e-04
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 7e-11
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 5e-10
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 1e-10
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 3e-05
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 8e-04
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 1e-09
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 1e-07
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 3e-05
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 6e-09
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 3e-05
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 6e-04
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 25/123 (20%)

Query: 67  GIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLRSGEQGQNSIIADNSQSASSASMLDS 126
                    T +       S   L   ++  +VL   +    S       +   A +  +
Sbjct: 16  TQGNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDRDDRVWSTNTAGKGTGCRAVLQPN 75

Query: 127 GSFVLHNSDGKVIWQTFDHPTDTLLPTQRLSAGTELCSGISETDPSTGKFRLKMQNDGNL 186
           G   +  +    +W +                             S G++   +Q D NL
Sbjct: 76  GRMDVLTNQNIAVWTSG-------------------------NSRSAGRYVFVLQPDRNL 110

Query: 187 VQY 189
             Y
Sbjct: 111 AIY 113
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.83
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.8
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.77
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.76
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.61
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.56
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.36
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.19
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.16
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.15
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.12
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.1
d1emoa239 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 93.38
d2vj3a142 Neurogenic locus notch homolog protein 1, Notch1 { 91.07
d1xkba139 Factor X, N-terminal module {Human (Homo sapiens) 90.12
d2vj3a239 Neurogenic locus notch homolog protein 1, Notch1 { 86.86
d1emoa143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 86.12
d2qj2a191 Hepatocyte growth factor {Human (Homo sapiens) [Ta 85.44
d1edmb_39 Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 84.98
d1i0ua241 Low density lipoprotein (LDL) receptor, different 84.64
d2vj3a335 Neurogenic locus notch homolog protein 1, Notch1 { 83.28
d1uzka143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 82.27
d2c4fl137 Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} 80.1
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]

Probab=99.83  E-value=2.3e-20  Score=155.37  Aligned_cols=110  Identities=17%  Similarity=0.320  Sum_probs=90.3

Q ss_pred             ccccCCCCcccCCCCCeEEeCCCeEEEEEEeCCCCCeeEEEEEEeecCCCcEEEEecCCCCCCCCccEEEEecCCcEEEE
Q 043869           22 HSNISIGSSLSPTGNSSWRSPSGLYAFGFYPQRNGSRYYVGVFLAGIPEKTVVWTANRDNPPVSSNATLMFNSEGRIVLR  101 (450)
Q Consensus        22 ~~~i~~g~~l~~~~~~~l~S~~g~F~lGF~~~~~~~~~~lgIw~~~~~~~tvVW~ANr~~Pv~~~~~~L~l~~~G~LvL~  101 (450)
                      +|+|.+||.|.++  ++|+|  |.|+|.|+.+||.     .+ |.   ..++||.||++.|.  .+++|.|+.||+|+|.
T Consensus         1 tDtL~~gq~L~~g--~~l~~--g~~~l~~q~DGNL-----vl-y~---~~~~vW~s~~~~~~--~~~~l~l~~dGnLvl~   65 (112)
T d1xd5a_           1 SDRLNSGHQLDTG--GSLAE--GGYLFIIQNDCNL-----VL-YD---NNRAVWASGTNGKA--SGCVLKMQNDGNLVIY   65 (112)
T ss_dssp             CCEEETTEEECTT--CEEEE--TTEEEEECTTSCE-----EE-EE---TTEEEEECCCTTSC--SSEEEEECTTSCEEEE
T ss_pred             CCEecCCCEecCC--CEEEE--CCEEEEEcCCCCE-----EE-Ec---CCcEEEEccCccCC--CCcEEEEeccccEEEE
Confidence            4789999999876  88874  9999999988864     23 33   46899999998874  3678999999999999


Q ss_pred             eCCCCceEEeecCC--CCccEEEEecCCCeEEEecCCeeEEeecCCCCC
Q 043869          102 SGEQGQNSIIADNS--QSASSASMLDSGSFVLHNSDGKVIWQTFDHPTD  148 (450)
Q Consensus       102 d~~~g~~vW~st~~--~~~~~a~LldsGNlVL~~~~~~~lWQSFd~PTD  148 (450)
                      +.  +.++|.++..  ....+|+|+|+|||||++.++.++|||+.||+|
T Consensus        66 ~~--~~~~w~s~t~~~~~~~~l~L~ddGNlvly~~~~~~~W~S~t~~~n  112 (112)
T d1xd5a_          66 SG--SRAIWASNTNRQNGNYYLILQRDRNVVIYDNSNNAIWATHTNVGN  112 (112)
T ss_dssp             ET--TEEEEECCCCCSCCCCEEEECTTSCEEEECTTSCEEEECCCCCCC
T ss_pred             ec--CCeEEEEeeccCCCceEEEEcCCCCEEEECCCCcEEecCCCccCC
Confidence            96  4567734433  345689999999999999999999999999975
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure