Citrus Sinensis ID: 043985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MSSTLSDAFRGKRLNLQHKLLDFTSLKELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
ccccHHHHHHccccccccEEEccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEccccccEEEEEccccEEEcccccccEEEEEccEEEEHccccccccccEEEccccccEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHHcccccccccc
cccccHHHHccccccccccEccHcccccccHHcccccccccccccccccccccEEEcccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccEEEEEEEcccccccccHHHEEEEEcccHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEcccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHHccHHHcHccc
msstlsdafrgKRLNLQHKlldftslkelpdlytwtepdeypagqslasesvpvidldgptaVNVNLIGHACKTWGVFQVinhgiptallhnamctsrslftlpneqklkvarspdafegygFARISSFFSKLMWYegftnvgspldhfcqlwpqdynmHCNVVEEYKKEMKKLAERLMCLILRSlgttredikwpglngdfkdhpsplnfnyypacpdpdramglaahtdsSLFTILYQNSVSGLQVlregtgwvtvppvsdalVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFyglpsdlqisplenlvgpsqpplyrsisWSEYLRMKAKHFNKALSFVRV
msstlsdafrgkrlnlqhklldftslkELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKvarspdafegYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNkalsfvrv
MSSTLSDAFRGKRLNLQHKLLDFTSLKELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
************RLNLQHKLLDFTSLKELPDLYTWTEPDEYP****LASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKAL*****
***************************ELPDLYTWT***************VPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKL*********EGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
********FRGKRLNLQHKLLDFTSLKELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
***************LQHKLLDFTSLKELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSTLSDAFRGKRLNLQHKLLDFTSLKELPDLYTWTEPDEYPAGQSLASESVPVIDLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVxxxxxxxxxxxxxxxxxxxxxSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATRKNRLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query350 2.2.26 [Sep-21-2011]
Q39103358 Gibberellin 3-beta-dioxyg yes no 0.991 0.969 0.557 1e-109
Q9ZT84347 Gibberellin 3-beta-dioxyg no no 0.982 0.991 0.532 4e-99
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.934 0.921 0.492 1e-86
Q9SVS8349 Gibberellin 3-beta-dioxyg no no 0.965 0.968 0.452 2e-80
Q3I409369 Gibberellin 3-beta-dioxyg N/A no 0.922 0.875 0.391 2e-63
Q3I411370 Gibberellin 3-beta-dioxyg N/A no 0.937 0.886 0.384 6e-61
Q3I410370 Gibberellin 3-beta-dioxyg N/A no 0.942 0.891 0.383 8e-61
D4N502360 Codeine O-demethylase OS= N/A no 0.865 0.841 0.365 8e-47
D4N501364 Probable 2-oxoglutarate/F N/A no 0.848 0.815 0.376 2e-46
D4N500364 Thebaine 6-O-demethylase N/A no 0.848 0.815 0.357 3e-44
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function desciption
 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/355 (55%), Positives = 252/355 (70%), Gaps = 8/355 (2%)

Query: 1   MSSTLSDAFRGKRLNLQHKLL-DFTSLKELPDLYTWTEPDE--YPAGQS--LASESVPVI 55
           M + L+D FRG  ++L H  + DFTSL+ELPD Y WT  D+  + A  S     E++P+I
Sbjct: 1   MPAMLTDVFRGHPIHLPHSHIPDFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLI 60

Query: 56  DLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSP 115
           DLD P A N   IGHAC+TWG FQ+ NHG+P  LL +    + SLF LP ++KLK ARS 
Sbjct: 61  DLDHPDATNQ--IGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSE 118

Query: 116 DAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLA 175
               GYG ARI+SFF+K MW EGFT  GSPL+ F +LWPQ +  +C++VEEY++ MKKLA
Sbjct: 119 TGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLA 178

Query: 176 ERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLF 235
            +LM L L SLG + EDI+W  L+ D     + L  N+YP CP+PDRAMGLAAHTDS+L 
Sbjct: 179 SKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLL 238

Query: 236 TILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRA-VATRKN 294
           TILYQN+ +GLQV R+  GWVTVPP   +LVVNVGD+ HILSNGL+ SVLHRA V   + 
Sbjct: 239 TILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRA 298

Query: 295 RLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVR 349
           RLS+A+ +G  SD++ISP+  LV P + PLY+S++W EYLR KA HFNKALS +R
Sbjct: 299 RLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNKALSMIR 353
Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I411|G3O21_WHEAT Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
61651585372 gibberellin 3-beta hydroxylase [Prunus s 0.994 0.935 0.681 1e-134
365176184368 gibberellin 3 oxidase 1 [Castanea mollis 0.994 0.945 0.669 1e-132
405779216371 gibberellin 3-oxidase [Pyrus communis] 0.994 0.938 0.666 1e-131
359482967365 PREDICTED: gibberellin 3-beta-dioxygenas 0.985 0.945 0.646 1e-129
147852208365 hypothetical protein VITISV_028510 [Viti 0.985 0.945 0.646 1e-129
224058719372 gibberellin 3-oxidase [Populus trichocar 0.988 0.930 0.643 1e-128
38154346373 gibberellin 3-oxidase [Populus tremula x 0.991 0.930 0.644 1e-128
224070877373 gibberellin 3-oxidase [Populus trichocar 0.991 0.930 0.644 1e-128
255040357369 gibberellin 3-oxidase [Malus x domestica 0.994 0.943 0.655 1e-127
340796369364 GA3ox1 [Gossypium hirsutum] 0.971 0.934 0.652 1e-125
>gi|61651585|dbj|BAD91162.1| gibberellin 3-beta hydroxylase [Prunus subhirtella] Back     alignment and taxonomy information
 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/355 (68%), Positives = 279/355 (78%), Gaps = 7/355 (1%)

Query: 1   MSSTLSDAFRGKRLNLQHKLLDFTSLKELPDLYTWTE-PDEYPAG-QSLASE--SVPVID 56
           M + LSDAF+   LNLQ K  DF+SL+ELPD Y W++  D+YP+   S  +E  SVPVID
Sbjct: 1   MPARLSDAFKSHPLNLQLKHPDFSSLQELPDSYAWSQNDDQYPSSPGSFGAEQDSVPVID 60

Query: 57  LDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPD 116
           L  P A+   L GHAC+TWGVFQV NHGIP+ LL +     RSLF+LP +QKLK ARSPD
Sbjct: 61  LSDPNALK--LTGHACRTWGVFQVTNHGIPSKLLDDIESAGRSLFSLPVQQKLKAARSPD 118

Query: 117 AFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLAE 176
              GYGFARISSFF KLMW EGFT VGSPLDHF QLWPQDYN  CN++EEY+K MK+LA 
Sbjct: 119 GISGYGFARISSFFQKLMWSEGFTIVGSPLDHFRQLWPQDYNKFCNIIEEYEKVMKRLAG 178

Query: 177 RLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFT 236
           RLM L+L SLG + ED+KW G  GDF+D  + L  N YPACPDPDRAMGLAAHTDS+L T
Sbjct: 179 RLMWLMLGSLGISMEDVKWAGPKGDFRDASAALQLNSYPACPDPDRAMGLAAHTDSTLLT 238

Query: 237 ILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KNR 295
           ILYQN+ SGLQVLREGTGWVTVPP+  ALVVNVGD++HILSNGLYPSVLHRAV  R ++R
Sbjct: 239 ILYQNNTSGLQVLREGTGWVTVPPLPGALVVNVGDLIHILSNGLYPSVLHRAVVNRSRHR 298

Query: 296 LSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV 350
           LSIAY YG P+ +QISPL  L+GPSQPPLYR I+W+EYL  KAKHFNKALS VR+
Sbjct: 299 LSIAYLYGPPASVQISPLSKLLGPSQPPLYRPITWNEYLGTKAKHFNKALSSVRL 353

Source: Prunus subhirtella

Species: Prunus subhirtella

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|365176184|gb|AEW67998.1| gibberellin 3 oxidase 1 [Castanea mollissima] Back     alignment and taxonomy information
>gi|405779216|gb|AFS18537.1| gibberellin 3-oxidase [Pyrus communis] Back     alignment and taxonomy information
>gi|359482967|ref|XP_002284963.2| PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Vitis vinifera] gi|297743334|emb|CBI36201.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147852208|emb|CAN80137.1| hypothetical protein VITISV_028510 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224058719|ref|XP_002299619.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222846877|gb|EEE84424.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38154346|gb|AAR12160.1| gibberellin 3-oxidase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224070877|ref|XP_002303276.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222840708|gb|EEE78255.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255040357|gb|ACT99991.1| gibberellin 3-oxidase [Malus x domestica] Back     alignment and taxonomy information
>gi|340796369|gb|AEK70423.1| GA3ox1 [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2196623358 GA3OX1 "gibberellin 3-oxidase 0.991 0.969 0.557 6e-103
TAIR|locus:2034205347 GA3OX2 "gibberellin 3-oxidase 0.982 0.991 0.529 2.2e-98
TAIR|locus:2034195355 GA3OX4 "gibberellin 3-oxidase 0.925 0.912 0.497 3.2e-81
TAIR|locus:2119068349 GA3OX3 "gibberellin 3-oxidase 0.965 0.968 0.455 1e-77
UNIPROTKB|Q9FU53373 P0013F10.29 "GA 3beta-hydroxyl 0.925 0.868 0.407 8.5e-65
UNIPROTKB|Q6AT12384 OSJNBa0029B02.17 "Putative gib 0.934 0.851 0.365 2e-56
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.811 0.804 0.385 4.2e-47
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.8 0.795 0.378 2.4e-44
TAIR|locus:2159542336 FLS1 "flavonol synthase 1" [Ar 0.854 0.889 0.351 2.8e-43
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.742 0.714 0.387 1.2e-42
TAIR|locus:2196623 GA3OX1 "gibberellin 3-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 198/355 (55%), Positives = 252/355 (70%)

Query:     1 MSSTLSDAFRGKRLNLQHKLL-DFTSLKELPDLYTWTEPDE--YPAGQS--LASESVPVI 55
             M + L+D FRG  ++L H  + DFTSL+ELPD Y WT  D+  + A  S     E++P+I
Sbjct:     1 MPAMLTDVFRGHPIHLPHSHIPDFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLI 60

Query:    56 DLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSP 115
             DLD P A N   IGHAC+TWG FQ+ NHG+P  LL +    + SLF LP ++KLK ARS 
Sbjct:    61 DLDHPDATNQ--IGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSE 118

Query:   116 DAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLA 175
                 GYG ARI+SFF+K MW EGFT  GSPL+ F +LWPQ +  +C++VEEY++ MKKLA
Sbjct:   119 TGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLA 178

Query:   176 ERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLF 235
              +LM L L SLG + EDI+W  L+ D     + L  N+YP CP+PDRAMGLAAHTDS+L 
Sbjct:   179 SKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLL 238

Query:   236 TILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRA-VATRKN 294
             TILYQN+ +GLQV R+  GWVTVPP   +LVVNVGD+ HILSNGL+ SVLHRA V   + 
Sbjct:   239 TILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRA 298

Query:   295 RLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVR 349
             RLS+A+ +G  SD++ISP+  LV P + PLY+S++W EYLR KA HFNKALS +R
Sbjct:   299 RLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNKALSMIR 353
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP;TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009639 "response to red or far red light" evidence=IEP
GO:0008134 "transcription factor binding" evidence=IPI
GO:0010114 "response to red light" evidence=IEP
GO:0016707 "gibberellin 3-beta-dioxygenase activity" evidence=IDA;IMP;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS
TAIR|locus:2034205 GA3OX2 "gibberellin 3-oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119068 GA3OX3 "gibberellin 3-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU53 P0013F10.29 "GA 3beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT12 OSJNBa0029B02.17 "Putative gibberellin 3 beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159542 FLS1 "flavonol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39103G3OX1_ARATH1, ., 1, 4, ., 1, 1, ., 1, 50.55770.99140.9692yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.150.946
3rd Layer1.14.110.963
4th Layer1.14.11.9LOW CONFIDENCE prediction!
3rd Layer1.14.11.13LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 0.0
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-69
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-64
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-63
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 6e-62
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-59
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 6e-58
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-56
PLN02216357 PLN02216, PLN02216, protein SRG1 4e-55
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 9e-52
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-51
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-48
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-46
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-45
PLN02997325 PLN02997, PLN02997, flavonol synthase 8e-45
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-44
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-42
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 6e-40
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-39
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 1e-38
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-37
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-37
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-35
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-31
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-29
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 3e-08
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information 
 Score =  563 bits (1454), Expect = 0.0
 Identities = 225/356 (63%), Positives = 262/356 (73%), Gaps = 8/356 (2%)

Query: 1   MSSTLSDAFRGKRLNLQH-KLLDFTSLKELPDLYTWTE----PDEYPAGQSLASESVPVI 55
           M STLSDAFR   L+L H   LDFTSL+ LPD + WT             S   ES+PVI
Sbjct: 1   MPSTLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVI 60

Query: 56  DLDGPTAVNVNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSP 115
           DL  P A+   LIGHAC+TWGVFQV NHGIP +LL +    +R LF+LP ++KLK ARSP
Sbjct: 61  DLSDPNALT--LIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSP 118

Query: 116 DAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQDYNMHCNVVEEYKKEMKKLA 175
           D   GYG ARISSFF+K MW EGFT +GSPL+H  QLWPQD+   C+V+EEY+KEMKKLA
Sbjct: 119 DGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLA 178

Query: 176 ERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLF 235
           ERLM L+L SLG T EDIKW G     +   + L  N YP CPDPDRAMGLA HTDSSL 
Sbjct: 179 ERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLL 238

Query: 236 TILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KN 294
           TILYQ++ SGLQV REG GWVTVPPV  +LVVNVGD+LHILSNG +PSVLHRAV  + ++
Sbjct: 239 TILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRH 298

Query: 295 RLSIAYFYGLPSDLQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVRV 350
           R+S+AYFYG PSD+QISPL  LV P+ PPLYRS++W EYL  KAKHFNKALS +R 
Sbjct: 299 RISVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIRN 354

Length = 358
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.86
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.06
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 93.79
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 92.98
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.13
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-84  Score=622.56  Aligned_cols=347  Identities=65%  Similarity=1.091  Sum_probs=302.0

Q ss_pred             CCcchhhhhhcCCCccchh-hhhcCCCCCCCCCCccCCCCCC-CCC---CCCCCCCCceeeCCCCChHHHHHHHHHHhhc
Q 043985            1 MSSTLSDAFRGKRLNLQHK-LLDFTSLKELPDLYTWTEPDEY-PAG---QSLASESVPVIDLDGPTAVNVNLIGHACKTW   75 (350)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~-~~~---~~~~~~~iPvIDls~~~~~~~~~l~~A~~~~   75 (350)
                      |-||.+.+.+.++...++- ++..+.+.+||++||+|+++++ |..   ......+||||||++.  .++++|.+||++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~--~~~~~l~~Ac~~~   78 (358)
T PLN02254          1 MPSTLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP--NALTLIGHACETW   78 (358)
T ss_pred             CCcchhhhhccCCcccccccccchhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH--HHHHHHHHHHHHC
Confidence            6688888888777776552 3666777789999999998873 221   1122357999999965  3569999999999


Q ss_pred             cEEEEEcCCCCHHHHHHHHHHHhHhcCCCHHHHhhhcCCCCCccccccCcccccccccceeccccccCCCCcccCCCCCC
Q 043985           76 GVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVARSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHFCQLWPQ  155 (350)
Q Consensus        76 GFF~l~nhGI~~~~i~~~~~~~~~FF~lP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~wP~  155 (350)
                      |||||+||||+.++++++++.+++||+||.|+|+++.+...++.||+.........+.+|+|.|.+...+.....|.||+
T Consensus        79 GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~  158 (358)
T PLN02254         79 GVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQ  158 (358)
T ss_pred             CEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCC
Confidence            99999999999999999999999999999999999987666788998766555556789999999876555456789999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCCCCCCCCCCcCccccccCCCCCcccCCCCCCccCCCcE
Q 043985          156 DYNMHCNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLF  235 (350)
Q Consensus       156 ~~~~fr~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~l~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~l  235 (350)
                      .+++||+++++|+++|.+|+.+||++|+++|||++++|..+........+.+.+|+||||||+.++.++|+++|||+|+|
T Consensus       159 ~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~l  238 (358)
T PLN02254        159 DHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLL  238 (358)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcE
Confidence            99999999999999999999999999999999998777443211112455678999999999999999999999999999


Q ss_pred             EEEeeCCCCceeEEeCCCCeeecCCCCCcEEEEcchhhHHHhCCCCCCcccccCCCC-CCceeEEEeecCCCCCeeecCc
Q 043985          236 TILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KNRLSIAYFYGLPSDLQISPLE  314 (350)
Q Consensus       236 TlL~qd~~~GLqV~~~~g~W~~V~p~~g~~vVniGd~l~~~TnG~~kS~~HRV~~~~-~~R~Sia~F~~P~~d~~i~pl~  314 (350)
                      |||+||+++||||++++|+|++|+|+||++|||+||+||+||||+|||++|||+++. .+||||+||++|+.|++|+|++
T Consensus       239 TiL~Qd~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~  318 (358)
T PLN02254        239 TILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLP  318 (358)
T ss_pred             EEEecCCCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcH
Confidence            999999999999998877899999999999999999999999999999999999988 9999999999999999999999


Q ss_pred             cccCCCCCCCCCCcCHHHHHHHHHHhhhhhccccc
Q 043985          315 NLVGPSQPPLYRSISWSEYLRMKAKHFNKALSFVR  349 (350)
Q Consensus       315 ~~~~~~~p~~y~~~~~~e~~~~~~~~~~~~~~~~~  349 (350)
                      +++++++|++|++++|+||+..+.+.+.+.++.++
T Consensus       319 ~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~  353 (358)
T PLN02254        319 KLVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIR  353 (358)
T ss_pred             HhcCCCCCcccCCcCHHHHHHHHHHhhhhhhhhhh
Confidence            99999999999999999999999988888777665

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 7e-35
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 9e-35
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-33
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-33
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-14
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-08
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 1e-06
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (363), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 149/299 (49%), Gaps = 15/299 (5%)
Query: 51  SVPVIDLDGPTAVN-------VNLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTL 103
            VP IDL    + +       +  +  A   WGV  +INHGIP  L+          F+L
Sbjct: 46  QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 104 PNEQKLKVA--RSPDAFEGYGFARISSFFSKLMWYEGFTNVGSPLDHF-CQLWPQDYNMH 160
             E+K K A  ++    +GYG    ++   +L W + F ++  P +     +WP+  + +
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDP 220
                EY K ++ LA ++   +  S+G   E  +     G  ++    +  NYYP CP P
Sbjct: 166 IEATSEYAKCLRLLATKVFKAL--SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 221 DRAMGLAAHTDSSLFTILYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGL 280
           + A+G+ AHTD S  T +  N V GLQ+  EG  WVT   V D++V+++GD L ILSNG 
Sbjct: 224 ELALGVEAHTDVSALTFILHNMVPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGK 282
Query: 281 YPSVLHRAVATR-KNRLSIAYFYGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMK 337
           Y S+LHR +  + K R+S A F   P D + + PL  +V    P  +   ++++++  K
Sbjct: 283 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-125
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-123
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-84
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-80
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-78
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  363 bits (935), Expect = e-125
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 23/345 (6%)

Query: 19  KLLDFTSLKELPDLYTWTEPD------EYPAGQSLASESVPVIDLDGPTAVN-------V 65
           + L  + +  +P  Y   + +       +   +      VP IDL    + +       +
Sbjct: 8   ESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCI 67

Query: 66  NLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVA--RSPDAFEGYGF 123
             +  A   WGV  +INHGIP  L+          F+L  E+K K A  ++    +GYG 
Sbjct: 68  EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGS 127

Query: 124 ARISSFFSKLMWYEGFTNVGSPLDHF-CQLWPQDYNMHCNVVEEYKKEMKKLAERLMCLI 182
              ++   +L W + F ++  P +     +WP+  + +     EY K ++ LA ++   +
Sbjct: 128 KLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 187

Query: 183 LRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNS 242
              LG   + ++     G  ++    +  NYYP CP P+ A+G+ AHTD S  T +  N 
Sbjct: 188 SVGLGLEPDRLEK--EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245

Query: 243 VSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVA-TRKNRLSIAYF 301
           V GLQ+  EG  WVT   V D++V+++GD L ILSNG Y S+LHR +    K R+S A F
Sbjct: 246 VPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304

Query: 302 YGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMKAKHFNKAL 345
              P D + + PL  +V    P  +   +++++  ++ K F K  
Sbjct: 305 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH--IEHKLFGKEQ 347
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 94.27
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 91.8
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 87.05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-79  Score=588.71  Aligned_cols=318  Identities=29%  Similarity=0.503  Sum_probs=279.2

Q ss_pred             hhhhhcCCCCCCCCCCccCCCCCCCCCCC----C---CCCCCceeeCCCCC-------hHHHHHHHHHHhhccEEEEEcC
Q 043985           18 HKLLDFTSLKELPDLYTWTEPDEYPAGQS----L---ASESVPVIDLDGPT-------AVNVNLIGHACKTWGVFQVINH   83 (350)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~---~~~~iPvIDls~~~-------~~~~~~l~~A~~~~GFF~l~nh   83 (350)
                      -+.|..+++++||++|++|++++ |....    .   ...+||||||+...       ..++++|.+||++||||||+||
T Consensus         7 v~~l~~~~~~~vP~~~~~p~~~~-~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nH   85 (356)
T 1gp6_A            7 VESLAKSGIISIPKEYIRPKEEL-ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   85 (356)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHH-TTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHhcCCCCCCHHhcCCchhc-ccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            35566778999999999998877 53221    1   12469999999642       1267999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhHhcCCCHHHHhhhcCCC--CCccccccCcccccccccceeccccccCCCCc-ccCCCCCCccchh
Q 043985           84 GIPTALLHNAMCTSRSLFTLPNEQKLKVARSP--DAFEGYGFARISSFFSKLMWYEGFTNVGSPLD-HFCQLWPQDYNMH  160 (350)
Q Consensus        84 GI~~~~i~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~-~~~~~wP~~~~~f  160 (350)
                      ||+.++++++++.+++||+||.|+|+++....  ..++||+........++.||+|.|++...+.. ...|.||+.+++|
T Consensus        86 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~f  165 (356)
T 1gp6_A           86 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY  165 (356)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhh
Confidence            99999999999999999999999999998654  36899987665444567899999998755432 4578999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCCCCCCC---CCCcCccccccCCCCCcccCCCCCCccCCCcEEE
Q 043985          161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFK---DHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTI  237 (350)
Q Consensus       161 r~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~l~~~~~~~~~~---~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTl  237 (350)
                      |+.+++|+++|.+|+.+||++|+++|||++++|....     .   ...+.||++|||+|++++..+|+++|||+|+|||
T Consensus       166 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-----~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTl  240 (356)
T 1gp6_A          166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEV-----GGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  240 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHT-----THHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-----cccCCccceeeeeecCCCCCcccccCcCCccCCCeEEE
Confidence            9999999999999999999999999999988775442     2   3667899999999999988999999999999999


Q ss_pred             EeeCCCCceeEEeCCCCeeecCCCCCcEEEEcchhhHHHhCCCCCCcccccCCCC-CCceeEEEeecCCCCC-eeecCcc
Q 043985          238 LYQNSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KNRLSIAYFYGLPSDL-QISPLEN  315 (350)
Q Consensus       238 L~qd~~~GLqV~~~~g~W~~V~p~~g~~vVniGd~l~~~TnG~~kS~~HRV~~~~-~~R~Sia~F~~P~~d~-~i~pl~~  315 (350)
                      |+||+++||||+++ |+|++|+|+||++||||||+||+||||+|||++|||+.++ .+|||++||++|+.|+ +|+|+++
T Consensus       241 L~qd~v~GLQV~~~-g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~  319 (356)
T 1gp6_A          241 ILHNMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  319 (356)
T ss_dssp             EEECSCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             EEEcCCCCeEEecC-CcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChh
Confidence            99999999999974 5999999999999999999999999999999999999988 9999999999999999 9999999


Q ss_pred             ccCCCCCCCCCCcCHHHHHHHHHHhhh
Q 043985          316 LVGPSQPPLYRSISWSEYLRMKAKHFN  342 (350)
Q Consensus       316 ~~~~~~p~~y~~~~~~e~~~~~~~~~~  342 (350)
                      ++++++|++|+++||+||+..+++...
T Consensus       320 ~~~~~~p~~y~~~t~~eyl~~~~~~~~  346 (356)
T 1gp6_A          320 MVSVESPAKFPPRTFAQHIEHKLFGKE  346 (356)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHHHHH
T ss_pred             hcCCCCCccCCCccHHHHHHHHHHhcc
Confidence            999999999999999999988765543
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-62
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-61
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-55
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-46
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  200 bits (508), Expect = 4e-62
 Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 21/337 (6%)

Query: 19  KLLDFTSLKELPDLYTWTEPD------EYPAGQSLASESVPVIDLDGPTAVN-------V 65
           + L  + +  +P  Y   + +       +   +      VP IDL    + +       +
Sbjct: 7   ESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCI 66

Query: 66  NLIGHACKTWGVFQVINHGIPTALLHNAMCTSRSLFTLPNEQKLKVA--RSPDAFEGYGF 123
             +  A   WGV  +INHGIP  L+          F+L  E+K K A  ++    +GYG 
Sbjct: 67  EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGS 126

Query: 124 ARISSFFSKLMWYEGFTNVGSPLDHFC-QLWPQDYNMHCNVVEEYKKEMKKLAERLMCLI 182
              ++   +L W + F ++  P +     +WP+  + +     EY K ++ LA ++   +
Sbjct: 127 KLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 186

Query: 183 LRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQNS 242
              LG   + ++     G  ++    +  NYYP CP P+ A+G+ AHTD S  T +  N 
Sbjct: 187 SVGLGLEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244

Query: 243 VSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KNRLSIAYF 301
           V GLQ+  EG  WVT   V D++V+++GD L ILSNG Y S+LHR +  + K R+S A F
Sbjct: 245 VPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 302 YGLPSD-LQISPLENLVGPSQPPLYRSISWSEYLRMK 337
              P D + + PL  +V    P  +   ++++++  K
Sbjct: 304 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.72
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 80.38
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.6e-76  Score=560.38  Aligned_cols=317  Identities=29%  Similarity=0.511  Sum_probs=271.7

Q ss_pred             hhhhhcCCCCCCCCCCccCCCCCCCCC-------CCCCCCCCceeeCCCCC-------hHHHHHHHHHHhhccEEEEEcC
Q 043985           18 HKLLDFTSLKELPDLYTWTEPDEYPAG-------QSLASESVPVIDLDGPT-------AVNVNLIGHACKTWGVFQVINH   83 (350)
Q Consensus        18 ~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~iPvIDls~~~-------~~~~~~l~~A~~~~GFF~l~nh   83 (350)
                      -+.|..||+++||++||||++++ |..       ...+..+||||||+...       +.++++|.+||++||||||+||
T Consensus         6 ~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nH   84 (349)
T d1gp6a_           6 VESLAKSGIISIPKEYIRPKEEL-ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   84 (349)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHH-TTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             hHHHHhCCCccCCHhhcCChhhc-CCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            36788999999999999999988 543       23456789999999642       1367999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhHhcCCCHHHHhhhcCC--CCCccccccCcccccccccceeccccccCCCC-cccCCCCCCccchh
Q 043985           84 GIPTALLHNAMCTSRSLFTLPNEQKLKVARS--PDAFEGYGFARISSFFSKLMWYEGFTNVGSPL-DHFCQLWPQDYNMH  160 (350)
Q Consensus        84 GI~~~~i~~~~~~~~~FF~lP~eeK~~~~~~--~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~-~~~~~~wP~~~~~f  160 (350)
                      ||+.++++++++++++||+||.|+|+++...  .+.+.||+........+..+|.+.+.....+. ....|.||+..+.|
T Consensus        85 GI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f  164 (349)
T d1gp6a_          85 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY  164 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchH
Confidence            9999999999999999999999999999754  23455666554444445666666544322222 34568999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCCCCCCCCCCCcCccccccCCCCCcccCCCCCCccCCCcEEEEee
Q 043985          161 CNVVEEYKKEMKKLAERLMCLILRSLGTTREDIKWPGLNGDFKDHPSPLNFNYYPACPDPDRAMGLAAHTDSSLFTILYQ  240 (350)
Q Consensus       161 r~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~l~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q  240 (350)
                      ++.+++|+++|.+++.+|+++++.+||++++++......  .+...+.+|++|||+++.++..+|+++|||+|+||||+|
T Consensus       165 ~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~--~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG--LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH--HHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhcc--ccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence            999999999999999999999999999998876432110  134557899999999999888999999999999999999


Q ss_pred             CCCCceeEEeCCCCeeecCCCCCcEEEEcchhhHHHhCCCCCCcccccCCCC-CCceeEEEeecCCCCCee-ecCccccC
Q 043985          241 NSVSGLQVLREGTGWVTVPPVSDALVVNVGDMLHILSNGLYPSVLHRAVATR-KNRLSIAYFYGLPSDLQI-SPLENLVG  318 (350)
Q Consensus       241 d~~~GLqV~~~~g~W~~V~p~~g~~vVniGd~l~~~TnG~~kS~~HRV~~~~-~~R~Sia~F~~P~~d~~i-~pl~~~~~  318 (350)
                      +.++||||+.+ |+|++|+|.+|++|||+||+||+||||+||||+|||+.++ .+||||+||++|+.|++| +|+++|++
T Consensus       243 ~~~~GLqv~~~-g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         243 NMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             CSCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             cCCcceeeecC-CceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence            99999999876 4999999999999999999999999999999999999988 999999999999999865 89999999


Q ss_pred             CCCCCCCCCcCHHHHHHHHH
Q 043985          319 PSQPPLYRSISWSEYLRMKA  338 (350)
Q Consensus       319 ~~~p~~y~~~~~~e~~~~~~  338 (350)
                      +++|++|+++|++||++.|+
T Consensus       322 ~~~p~~y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIEHKL  341 (349)
T ss_dssp             SSSCCSSCCEEHHHHHHHHH
T ss_pred             CCCCCCCCCccHHHHHHHHH
Confidence            99999999999999998765
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure