Citrus Sinensis ID: 044007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MSQASVKAYPVPEDNIVSSSLQTSSSPGPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHEEEEEcccccccccHHHHcccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEccccccccccEEEcccccccccHHHHHHHHHccccccccccccccccccccccHHHHHEccccccccEEcccccccccccccccccccccHHHHHHEEEcccccccEcccccccccEcHcHHHHHHHccccccEEEcccccEccccHHHHHHHHHcccccccccHcccccccccccccccccc
Coil and Loop (DISEMBL)
msqasvkaypvpednivssslqtssspgpasnptnsslLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQqmstlpaasisgnnnitANEIFQQqqhvgpnnqerssgqqgyyfteafdtcygdnndyvtthdhnrgmhnnvinsndntnITVAenresfseidCDIIELVAGDLLAKYTHYCQVCgkgfkrdaNLRMHMRAhgdeykttaaltnplkkngssmgnnnESAIKIARkyscpqegcrwnkkhakfqplksmicaknhykrshcpkmyvckrcnrkqfsVLSDLRTHEkhcgdlkwqcscgttfsrkdklMGHVALFvghtpavnvnstnmygqkgaatgtnait
Flexible Loop (DISEMBL)
msqasvkaypvpednIVSSSLQTSSSPGPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHnnvinsndnTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAAltnplkkngssmgnnNESAIKIARKYSCPQEGCRWnkkhakfqplkSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKhcgdlkwqcsCGTTFSRKDKLMGHVALFVGHTPavnvnstnmygqkgaatgtnait
Low Complexity Region (SEG)
MSQASVKAYPVPEDNIVssslqtssspgpasNPTNSSLLYSVFFLKEKIHqlqsvvtvlvsqgqATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHnnvinsndntnitvAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT
Disordered region (IsUnstruct)
*************************************LLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAA********************************GYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHM*******************************IKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNST****************
Disordered Region (DISOPRED)
*********************************TNSSLLYSVFFLKEKIHQLQSVVT****************ANMGSLIQEII************************************************************************HDHNR********************RESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN******************IARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGA****NA**
Disordered Region (DISEMBL)
********YPVPEDNIVS***************TNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQ*************QQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGA********
Disordered Region (DISPRO)
***ASVKAYPVPEDNI**************SNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAA*********************************************************************************F*EIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNM**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQASVKAYPVPEDNIVSSSLQTSSSPGPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.838	0.635	0.395	3e-68
Q943I6	522	Zinc finger protein STOP1	no	no	0.915	0.662	0.388	4e-68
Q2QX40	465	Zinc finger protein STAR3	no	no	0.814	0.662	0.384	9e-58
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.373	0.278	0.316	8e-21
Q700D2	503	Zinc finger protein JACKD	no	no	0.399	0.300	0.335	9e-21
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.378	0.306	0.319	1e-20
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.378	0.471	0.386	2e-19
Q14588	700	Zinc finger protein 234 O	yes	no	0.335	0.181	0.295	7e-08
B4F6U4	1173	PR domain zinc finger pro	no	no	0.404	0.130	0.295	2e-07
Q5RAX9	1117	PR domain zinc finger pro	no	no	0.335	0.113	0.335	3e-07

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 207/354 (58%), Gaps = 37/354 (10%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTVLVSQGQ---------ATESTSIAMANMGSLIQEIIITA 87
           ++L ++ F+++KIHQLQ +V +LV +G          A +   +   ++ S+I ++I TA
Sbjct: 80  TMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTA 139

Query: 88  SSLMVTCQQ-MSTLPAASISGNNNITANEIFQQQQHVGPNNQERSS-GQQGYYFTEAFDT 145
            SL+ + +  MST P    +G          ++  +V   +Q  ++ G + +   +    
Sbjct: 140 GSLLPSVKHNMSTAPGP-FTGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKP--- 195

Query: 146 CYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYT 205
                       D   G   +V+  ++  +    E  E+      +I++L   ++LA +T
Sbjct: 196 ---------VLVDEREG---HVVEEHEMKDEDDVEEGENLPPGSYEILQLEKEEILAPHT 243

Query: 206 HYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSC 265
           H+C +CGKGFKRDANLRMHMR HGDEYKT AAL  P K++         S   + ++YSC
Sbjct: 244 HFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPG------SEPMLIKRYSC 297

Query: 266 PQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCG 325
           P  GC+ NK+H KFQPLK+++C KNHYKR+HC K + C RC+ K+FSV++DL+THEKHCG
Sbjct: 298 PFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCG 357

Query: 326 DLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYG----QKGAATGTN 375
             KW CSCGTTFSRKDKL GH+ALF GHTPA+ +  T        Q+G++ G N
Sbjct: 358 KNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKPSASTSTQRGSSEGGN 411

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  258 bits (660), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 155/399 (38%), Positives = 222/399 (55%), Gaps = 53/399 (13%)

Query: 11  VPEDNIVSSSLQTSSSPGPASNPT----NSSLLYSVFFLKEKIHQLQSVVTVL------V 60
           +P+D       Q  S+P P +NPT      ++L ++ FL++KI Q++ +V  +      V
Sbjct: 68  LPDDIEAKIGNQFESNPSP-NNPTMDWDPQAMLSNLSFLEQKIKQVKDIVQSMSNRESQV 126

Query: 61  SQG--QATESTSIAMANMGSLIQEIIITASSLMVTCQ-QMSTLPAAS------------- 104
           + G  +A     +  A++  +I ++I TA SL+ + +  +S+ PA               
Sbjct: 127 AGGSSEAQAKQQLVTADLTCIIIQLISTAGSLLPSMKNPISSNPALRHLSNTLCAPMILG 186

Query: 105 ------ISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYGDNNDYVTTHD 158
                  S N+  T  +I +   +    N   ++  +        + C G+ ++ +   D
Sbjct: 187 TNCNLRPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMNCQNPCGGEGSEPIPMED 246

Query: 159 HNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRD 218
           H+      V  S+D         RE+       +++L   ++LA +TH+C +CGKGFKRD
Sbjct: 247 HD------VKESDD------GGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRD 294

Query: 219 ANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAK 278
           ANLRMHMR HGDEYKT AAL  P K   SS+    ESA     +YSCP  GC+ NK+H K
Sbjct: 295 ANLRMHMRGHGDEYKTAAALAKPSKD--SSL----ESAP--VTRYSCPYVGCKRNKEHKK 346

Query: 279 FQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFS 338
           FQPLK+++C KNHYKRSHC K Y C RCN K+FSV++DL+THEKHCG  KW CSCGTTFS
Sbjct: 347 FQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFS 406

Query: 339 RKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAI 377
           RKDKL GHVALF GHTPA+ ++   + G      G+ A+
Sbjct: 407 RKDKLFGHVALFQGHTPALPMDDIKVTGASEQPQGSEAM 445

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score =  224 bits (571), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 184/330 (55%), Gaps = 22/330 (6%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTVLV-----SQGQATESTSIAMANMGSLIQEIIITASSLM 91
           ++L ++ F++EKI Q++ V+  +      S   AT    +  A++  LI ++I TA SL+
Sbjct: 59  TMLDNLTFIEEKIRQVKDVIRSMAGRRASSSSAATPEQQLVNADLTCLIVQLISTAGSLL 118

Query: 92  VTCQQMSTLPAASISGNNNITANEIFQ----QQQHVGPNNQERSSGQQGYYFTEAFDTCY 147
            + +  S L   +        A +       +      NN+     ++    +  +D  +
Sbjct: 119 PSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNETNREDEEEQMGSPDYDELF 178

Query: 148 GDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHY 207
                 V T   N G  +  + +  +          +  E   ++++L   ++LA +TH+
Sbjct: 179 -----KVWT---NGGAMDECVGAAGDEQDARENPAAAAEEEKYEVLQLEEDEILAPHTHF 230

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C +CGKGFKRDANLRMHMR HGDEYK+ AAL  P            E   +  R+YSCP 
Sbjct: 231 CGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPP-----EGEEQPPQPERRYSCPH 285

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
            GC+ N+ HA FQPLK+++C KNHYKRSHC K +VC RC  K+FSV++DL+THEKHCG  
Sbjct: 286 AGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRD 345

Query: 328 KWQCSCGTTFSRKDKLMGHVALFVGHTPAV 357
           +W CSCGT+FSRKDKL  HVALF GH PA+
Sbjct: 346 RWLCSCGTSFSRKDKLFAHVALFQGHAPAL 375

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 20/161 (12%)

Query: 189 DCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSS 248
           + ++I L    L+A     C++CGKGF+RD NL++H R H   +K     +  ++K    
Sbjct: 53  EAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRK---- 108

Query: 249 MGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNR 308
                       R Y CP++ C     H   + L  +   K H+ R H  K + C++C  
Sbjct: 109 ------------RVYVCPEKSC---VHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKC-A 152

Query: 309 KQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVAL 349
           K+++V SD + H K CG  +++C CGT FSR+D  + H A 
Sbjct: 153 KRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAF 193

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 19/170 (11%)

Query: 180 ENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALT 239
            N+    + D D+I L    L+A     C++C KGF+RD NL++H R H   +K      
Sbjct: 56  RNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK------ 109

Query: 240 NPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPK 299
             LK+       + +  IK  + Y CP + C     H   + L  +   K HY R H  K
Sbjct: 110 --LKQR------SKQEVIK-KKVYICPIKTC---VHHDASRALGDLTGIKKHYSRKHGEK 157

Query: 300 MYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVAL 349
            + C++C++K ++V SD + H K CG  +++C CGT FSRKD  + H A 
Sbjct: 158 KWKCEKCSKK-YAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAF 206

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 20/163 (12%)

Query: 187 EIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNG 246
           + + ++I L    L+A     C+VCGKGF+RD NL++H R H   +K     +  ++K  
Sbjct: 47  DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRK-- 104

Query: 247 SSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRC 306
                         R Y CP++ C     H   + L  +   K H+ R H  K + C++C
Sbjct: 105 --------------RVYVCPEKTC---VHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKC 147

Query: 307 NRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVAL 349
             K+++V SD + H K CG  +++C CGT FSR+D  + H A 
Sbjct: 148 -AKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAF 189

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 200 LLAKYTHY-CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIK 258
           +L  +TH+ C VC K F R  NL+MHM  HG +Y+          K   S+      A+ 
Sbjct: 138 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYR----------KGPESLKGTQPRAML 187

Query: 259 IARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLR 318
               Y C  EGCR +  H + +PLK     + HYKR H  K + C+ C  K  +V  D R
Sbjct: 188 GIPCYCC-VEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCG-KLLAVKGDWR 245

Query: 319 THEKHCGDLKWQCSCGTTFSRKDKLMGHVALF-VGHTP 355
           THEK+CG  +W C CG+ F  K  L  HV  F  GH P
Sbjct: 246 THEKNCGK-RWVCVCGSDFKHKRSLKDHVKAFGSGHGP 282

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|Q14588|ZN234_HUMAN Zinc finger protein 234 OS=Homo sapiens GN=ZNF234 PE=2 SV=3

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 32/159 (20%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C+VCGK F++ + L++H++AH        ++  P K      G N  S ++I +      
Sbjct: 430 CEVCGKAFRQSSYLKIHLKAH--------SVQKPFKCEECGQGFNQSSRLQIHQLI---- 477

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRS----HC-----PKMYVCKRCNRKQFSVLSDLR 318
                   H   +P K   C K   +R+    HC      K Y C+ C  K FS  S L 
Sbjct: 478 --------HTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECG-KVFSQASHLL 528

Query: 319 THEK-HCGDLKWQC-SCGTTFSRKDKLMGHVALFVGHTP 355
           TH++ H G+  ++C  CG +FSR   L  H  +  G  P
Sbjct: 529 THQRVHSGEKPFKCEECGKSFSRSAHLQAHQKVHTGEKP 567

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|B4F6U4|PRD10_XENTR PR domain zinc finger protein 10 OS=Xenopus tropicalis GN=prdm10 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 204 YTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKY 263
           Y   C +C KGF   ++L  HM+ H D+ KT + +  P   +   +  ++     I   +
Sbjct: 587 YPLTCDICNKGFISTSSLENHMKFHLDQ-KTYSCIFCPESFDRLDLLKDHVVVHIIDGCF 645

Query: 264 SCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHE-K 322
           SCP   C+  K+   F      I  K H +  H  K+Y C  C+ K F     LR H  +
Sbjct: 646 SCP--TCK--KRFTDF------IQVKKHVRSFHSEKIYQCTECD-KAFCRPDKLRLHMLR 694

Query: 323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGA 370
           H     + CS CG  F RKDKL  H+     H P       +  G+  A
Sbjct: 695 HSDRKDFLCSTCGKQFKRKDKLREHMQRM--HNPEREAKKADRTGRAKA 741

May be involved in transcriptional regulation.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RAX9|PRD10_PONAB PR domain zinc finger protein 10 OS=Pongo abelii GN=PRDM10 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKY-SCP 266
           C +C KGF   A+L  HM+ H D+ KT + +  P   +   +  ++  AI I   Y +CP
Sbjct: 532 CDLCNKGFISSASLESHMKLHSDQ-KTYSCIFCPESFDRLDLLKDH-VAIHINDGYFTCP 589

Query: 267 QEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHE-KHCG 325
              C+  K+   F      I  K H +  H  K+Y C  C+ K F     LR H  +H  
Sbjct: 590 --TCK--KRFPDF------IQVKKHVRSFHSEKIYQCTECD-KAFCRPDKLRLHMLRHSD 638

Query: 326 DLKWQCS-CGTTFSRKDKLMGHV 347
              + CS CG  F RKDKL  H+
Sbjct: 639 RKDFLCSTCGKQFKRKDKLREHM 661

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
297734894	367	unnamed protein product [Vitis vinifera]	0.791	0.814	0.598	1e-106
225436444	423	PREDICTED: protein SENSITIVE TO PROTON R	0.830	0.742	0.581	1e-105
147772174	390	hypothetical protein VITISV_006074 [Viti	0.830	0.805	0.581	1e-105
255565483	416	hypothetical protein RCOM_0475290 [Ricin	0.880	0.800	0.567	1e-103
356547149	411	PREDICTED: protein SENSITIVE TO PROTON R	0.828	0.761	0.516	4e-97
356541958	410	PREDICTED: zinc finger protein STOP1 hom	0.846	0.780	0.513	2e-92
449532625	381	PREDICTED: protein SENSITIVE TO PROTON R	0.880	0.874	0.519	1e-91
449443590	381	PREDICTED: protein SENSITIVE TO PROTON R	0.880	0.874	0.519	1e-91
356541448	410	PREDICTED: uncharacterized protein LOC10	0.851	0.785	0.516	3e-88
30688719	373	C2H2 and C2HC zinc finger-containing pro	0.783	0.793	0.519	1e-85

>gi|297734894|emb|CBI17128.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/331 (59%), Positives = 238/331 (71%), Gaps = 32/331 (9%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTVLV--SQGQATESTSIAMANMGSLIQEIIITASSLMVTC 94
           SL+YS   LK+K+HQ+QS++++ V  +QGQ  ES ++A+A MG+LIQE+I  ASS+M +C
Sbjct: 44  SLVYSFSILKDKVHQVQSLISIFVPPNQGQP-ESMAMAVAGMGNLIQEVIAAASSMMYSC 102

Query: 95  QQMSTLPAASISGNNNITANEIFQQQQH-------VGPNNQERSSGQQGYYFTEAFDTCY 147
           QQM    A   SG N+    +  +           V    +ER    QG+Y ++     Y
Sbjct: 103 QQMGYGAAPGNSGTNHGLPQQGVELSDGRVCGDTGVVQMGEERG---QGFYSSDQSLDWY 159

Query: 148 GDNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHY 207
           GDN++   T+DH+R              I V+ N ++F     DI+EL A DLLAKYTHY
Sbjct: 160 GDNHNNSNTNDHSR-------------TIIVSNNDKTF-----DIVELDAEDLLAKYTHY 201

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           CQ+CGKGFKRDANLRMHMRAHGDEYK+ AAL+NP K  G  M  N +  IK+ RKYSCPQ
Sbjct: 202 CQICGKGFKRDANLRMHMRAHGDEYKSNAALSNPTKNIGREM-ENKDDLIKLPRKYSCPQ 260

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
           EGCRWN+KHAKFQPLKSMIC KNHYKRSHCPKMY+CKRCN+KQFSVLSDLRTHEKHCGDL
Sbjct: 261 EGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLRTHEKHCGDL 320

Query: 328 KWQCSCGTTFSRKDKLMGHVALFVGHTPAVN 358
           KW CSCGTTFSRKDKLMGHVALFVGHTPA+N
Sbjct: 321 KWLCSCGTTFSRKDKLMGHVALFVGHTPAIN 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436444|ref|XP_002272574.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Vitis vinifera]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/339 (58%), Positives = 241/339 (71%), Gaps = 25/339 (7%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTVLV--SQGQATESTSIAMANMGSLIQEIIITASSLMVTC 94
           SL+YS   LK+K+HQ+QS++++ V  +QGQ  ES ++A+A MG+LIQE+I  ASS+M +C
Sbjct: 44  SLVYSFSILKDKVHQVQSLISIFVPPNQGQP-ESMAMAVAGMGNLIQEVIAAASSMMYSC 102

Query: 95  QQMSTLPAASISGNNNITANEIFQQQQH-------VGPNNQERSSGQQGYYFTEAFDTCY 147
           QQM    A   SG N+    +  +           V    +ER    QG+Y ++     Y
Sbjct: 103 QQMGYGAAPGNSGTNHGLPQQGVELSDGRVCGDTGVVQMGEERG---QGFYSSDQSLDWY 159

Query: 148 GDNNDYVTTHDHNRGMHNNVINSNDNT--------NITVAENRESFSEIDCDIIELVAGD 199
           GDN++   T+DH+R +   ++++ND          +  + E          DI+EL A D
Sbjct: 160 GDNHNNSNTNDHSRTI---IVSNNDKVESRELPQGSTQMNEGLGGVLPKTFDIVELDAED 216

Query: 200 LLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKI 259
           LLAKYTHYCQ+CGKGFKRDANLRMHMRAHGDEYK+ AAL+NP K  G  M  N +  IK+
Sbjct: 217 LLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKSNAALSNPTKNIGREM-ENKDDLIKL 275

Query: 260 ARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRT 319
            RKYSCPQEGCRWN+KHAKFQPLKSMIC KNHYKRSHCPKMY+CKRCN+KQFSVLSDLRT
Sbjct: 276 PRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLRT 335

Query: 320 HEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVN 358
           HEKHCGDLKW CSCGTTFSRKDKLMGHVALFVGHTPA+N
Sbjct: 336 HEKHCGDLKWLCSCGTTFSRKDKLMGHVALFVGHTPAIN 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772174|emb|CAN64546.1| hypothetical protein VITISV_006074 [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/339 (58%), Positives = 241/339 (71%), Gaps = 25/339 (7%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTVLV--SQGQATESTSIAMANMGSLIQEIIITASSLMVTC 94
           SL+YS   LK+K+HQ+QS++++ V  +QGQ  ES ++A+A MG+LIQE+I  ASS+M +C
Sbjct: 44  SLVYSFSILKDKVHQVQSLISIFVPPNQGQP-ESMAMAVAGMGNLIQEVIAAASSMMYSC 102

Query: 95  QQMSTLPAASISGNNNITANEIFQQQQH-------VGPNNQERSSGQQGYYFTEAFDTCY 147
           QQM    A   SG N+    +  +           V    +ER    QG+Y ++     Y
Sbjct: 103 QQMGYGAAPGNSGTNHGLPQQGVELSDGRVCGDTGVVQMGEERG---QGFYSSDQSLDWY 159

Query: 148 GDNNDYVTTHDHNRGMHNNVINSNDNT--------NITVAENRESFSEIDCDIIELVAGD 199
           GDN++   T+DH+R +   ++++ND          +  + E          DI+EL A D
Sbjct: 160 GDNHNNSNTNDHSRTI---IVSNNDKVESRELPQGSTQMNEGLGGVXPKTFDIVELDAED 216

Query: 200 LLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKI 259
           LLAKYTHYCQ+CGKGFKRDANLRMHMRAHGDEYK+ AAL+NP K  G  M  N +  IK+
Sbjct: 217 LLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKSNAALSNPTKNIGREM-ENKDDLIKL 275

Query: 260 ARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRT 319
            RKYSCPQEGCRWN+KHAKFQPLKSMIC KNHYKRSHCPKMY+CKRCN+KQFSVLSDLRT
Sbjct: 276 PRKYSCPQEGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYICKRCNQKQFSVLSDLRT 335

Query: 320 HEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVN 358
           HEKHCGDLKW CSCGTTFSRKDKLMGHVALFVGHTPA+N
Sbjct: 336 HEKHCGDLKWLCSCGTTFSRKDKLMGHVALFVGHTPAIN 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565483|ref|XP_002523732.1| hypothetical protein RCOM_0475290 [Ricinus communis] gi|223537036|gb|EEF38672.1| hypothetical protein RCOM_0475290 [Ricinus communis]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/395 (56%), Positives = 274/395 (69%), Gaps = 62/395 (15%)

Query: 6   VKAYPVPEDNIVSSSLQTSSSP--GPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVS-- 61
           ++ YP   D+IVS+SL+ SSS   G A+     SLLYS+  +K+K++Q+QS+V++L S  
Sbjct: 22  LQVYPAASDDIVSTSLEASSSSEIGHAN-----SLLYSLSVVKDKVNQVQSLVSILTSPD 76

Query: 62  ------QGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANE 115
                 Q Q  E  SIA  N+G++IQEII+TASS+M TCQQM    A   S + N  A+E
Sbjct: 77  HHHQSYQQQNPEPNSIA--NLGTIIQEIIVTASSMMFTCQQM----AIGSSNSINNNASE 130

Query: 116 IFQ-----------QQQHVGPNNQERSSGQQGYYFTEAFD----------TCYGDNNDYV 154
           + Q           Q+  + PN+Q+   GQ  ++ +E FD          +C G  N+  
Sbjct: 131 LHQPAPPQPKVAAPQENVLLPNSQDHQRGQ-SFFASENFDWYDNNNYSNNSCNGTENNQT 189

Query: 155 TTHDHNRGMHNNVINSNDNTNITVAENRESFSEI----------DCDIIELVAGDLLAKY 204
            +     GMHN VI+ N N  +   E  E+FS++            DIIEL A  LLAKY
Sbjct: 190 AS-----GMHN-VISINTN-KVERKELSENFSDVLQEGNNKSIKSYDIIELDASYLLAKY 242

Query: 205 THYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKK-NGSSMGNNNE-SAIKIARK 262
           THYCQVCGKGFKRDANLRMHMRAHGDEYKT+AAL+NP+K  N S++G+++E S +K+ RK
Sbjct: 243 THYCQVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNINTSAIGDSSEDSVMKLPRK 302

Query: 263 YSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK 322
           YSCPQEGCRWN+KHAKFQPLKSMIC KNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK
Sbjct: 303 YSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK 362

Query: 323 HCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAV 357
           HCGDLKW C CGTTFSRKDKLMGHVALFVGHTPA+
Sbjct: 363 HCGDLKWLCCCGTTFSRKDKLMGHVALFVGHTPAI 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547149|ref|XP_003541979.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Glycine max]

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 188/364 (51%), Positives = 244/364 (67%), Gaps = 51/364 (14%)

Query: 38  LLYSVFFLKEKIHQLQSVVTVLVSQGQAT-ESTSIAMANMGSLIQEIIITASSLMVTCQQ 96
           LL+++  LK+K+ ++Q++V V++S  Q+  E TS+A+++M S+IQEII+TA+S+M TCQQ
Sbjct: 45  LLFNLSILKDKLSEVQTLVGVILSPNQSLPEPTSMAISSMNSIIQEIIVTATSMMFTCQQ 104

Query: 97  MS-TLPAASISGNNNITANEIFQQQQHVGPNNQERS-----------------SGQQGYY 138
           M+ T P          T N++ QQ + + P++   S                 S  QG +
Sbjct: 105 MALTTPPG--------TTNKLHQQNKSLLPHSNNNSGTNTSVLIGNNIGSDNISDHQGLF 156

Query: 139 FTEAFDTCYGDNNDYVTTHDH---------------NRGMHNNVINSNDNTNITVAEN-- 181
            +   +T      D+ +T  +               N    NN+I+   + +    E   
Sbjct: 157 SSTESETL-----DWFSTESYNNNIDNSNSNISKVANISSENNIISRGRDEHEPNEEEGY 211

Query: 182 -RESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN 240
            R    +++ DIIEL A +LLAKYTHYCQVCGKGF+RDANLRMHMRAHGDEYKT AAL+N
Sbjct: 212 YRGVSPKMNSDIIELDAANLLAKYTHYCQVCGKGFERDANLRMHMRAHGDEYKTNAALSN 271

Query: 241 PLKKNGSSMGNNNESAIKIAR-KYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPK 299
           P+K  G+ +    E  +   + KYSCPQEGCRWN++H KFQPLKSMICAKNHYKRSHCPK
Sbjct: 272 PIKNKGNLLEGGRECLMSTVKPKYSCPQEGCRWNQRHVKFQPLKSMICAKNHYKRSHCPK 331

Query: 300 MYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNV 359
           MYVCKRCN+KQFSVLSDLRTHEKHCGDLKWQC+CGT+FSRKDKLMGHVALFVGH PA  +
Sbjct: 332 MYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCTCGTSFSRKDKLMGHVALFVGHQPAAAI 391

Query: 360 NSTN 363
           N++N
Sbjct: 392 NNSN 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541958|ref|XP_003539439.1| PREDICTED: zinc finger protein STOP1 homolog [Glycine max]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/366 (51%), Positives = 238/366 (65%), Gaps = 46/366 (12%)

Query: 38  LLYSVFFLKEKIHQLQSVVTVLVSQGQAT-ESTSIAMANMGSLIQEIIITASSLMVTCQQ 96
           LL+++  LK+K+ ++Q++V V++S  Q+  ESTS+A+++M S IQEI++TA+S+M TCQQ
Sbjct: 43  LLFNLSILKDKLSEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEIVVTATSMMFTCQQ 102

Query: 97  MS-TLPAASISGNNNITANEIFQQQQHVGPNNQ------------------ERSSGQQGY 137
           M+ T P     G NN T N++   Q    P++                   +  S   G 
Sbjct: 103 MALTAPP----GTNNNT-NKLHHHQNKSLPHSSNINFATNGSCVLGNNIGTDNISDHHGL 157

Query: 138 YFTEAFDTCYGDNNDYVTTHDHNRGM--------HNNVINSNDNTNITVAENRESFSE-- 187
           + +   +T    +  Y    D++            NN+I         ++   E   E  
Sbjct: 158 FSSTESETLDWFSESYNNNDDNSNSNIISKVAISENNIITRGGGGGGVLSPRDEPNEEGL 217

Query: 188 -----IDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPL 242
                 D  IIEL A +LLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKT AAL+NP+
Sbjct: 218 SPKMNSDDIIIELDAANLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPI 277

Query: 243 KKNGSSMGNNNESAIKI-ARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMY 301
           K        + E  + +  ++YSCPQEGCRWN++HAKFQPLKSMICAKNHYKRSHCPKMY
Sbjct: 278 KNQ-----RDLECLMSVKPKRYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMY 332

Query: 302 VCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNS 361
           VCKRCN+KQFSVLSDLRTHEKHCGDLKW CSCGT+FSRKDKLMGHVALFVGH PA+N N 
Sbjct: 333 VCKRCNQKQFSVLSDLRTHEKHCGDLKWLCSCGTSFSRKDKLMGHVALFVGHQPAINNNG 392

Query: 362 TNMYGQ 367
            +  G+
Sbjct: 393 LSYSGK 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532625|ref|XP_004173281.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/368 (51%), Positives = 243/368 (66%), Gaps = 35/368 (9%)

Query: 14  DNIVSSSLQTSSSPGPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQ--------- 64
           DN++SS  Q+S++           LLY++  LKEK+HQ+QSVV + V   Q         
Sbjct: 28  DNLLSSYSQSSNT-----------LLYNLSVLKEKLHQIQSVVNIAVYNLQNSTESLPSA 76

Query: 65  --ATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQH 122
             A+  + +A A + SLIQE+I+ ASS++ TCQQM  L   +   NNN+  N   Q  QH
Sbjct: 77  PPASSQSPVATAAVNSLIQELIMAASSMLFTCQQMDNLAVNASLHNNNVGNNLQGQHHQH 136

Query: 123 VGPNNQ--ERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAE 180
                   + ++G+    F  A D  +   + Y TT       + N  N+N  T +T   
Sbjct: 137 QHQQQGPVDDNNGRSNTLFNMANDHHHQRQDWYNTT----TSNNYNKDNNNSRTIMTTKT 192

Query: 181 NRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN 240
            ++  + I+  I+EL A DLLAKYTHYCQ+CGKGFKRDANLRMHMRAHGDEYK + AL+N
Sbjct: 193 TQDHRNPIN--IVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSN 250

Query: 241 PLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKM 300
           P K +   + N ++  IK    YSCPQEGCRWN+KH KFQPLKS+IC KNH+KR+HCPKM
Sbjct: 251 PEKSHRKDLSNISKMGIK----YSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKM 306

Query: 301 YVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVN 360
           YVCK C+RK+FSVLSDLRTHEKHCGD+KW CSCGTTFSRKDKLMGHVALFVGHTPA+  +
Sbjct: 307 YVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHTPAMG-S 365

Query: 361 STNMYGQK 368
           ST   G++
Sbjct: 366 STKFLGKQ 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443590|ref|XP_004139560.1| PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Cucumis sativus]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/368 (51%), Positives = 243/368 (66%), Gaps = 35/368 (9%)

Query: 14  DNIVSSSLQTSSSPGPASNPTNSSLLYSVFFLKEKIHQLQSVVTVLVSQGQ--------- 64
           DN++SS  Q+S++           LLY++  LKEK+HQ+QSVV + V   Q         
Sbjct: 28  DNLLSSYSQSSNT-----------LLYNLSILKEKLHQIQSVVNIAVYNLQNSTESLPSA 76

Query: 65  --ATESTSIAMANMGSLIQEIIITASSLMVTCQQMSTLPAASISGNNNITANEIFQQQQH 122
             A+  + +A A + SLIQE+I+ ASS++ TCQQM  L   +   NNN+  N   Q  QH
Sbjct: 77  PPASSQSPVATAAVNSLIQELIMAASSMLFTCQQMDNLAVNASLHNNNVGNNLQGQHHQH 136

Query: 123 VGPNNQ--ERSSGQQGYYFTEAFDTCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAE 180
                   + ++G+    F  A D  +   + Y TT       + N  N+N  T +T   
Sbjct: 137 QHQQQGPVDDNNGRSNTLFNMANDHHHQRQDWYNTT----TSNNYNKDNNNGRTIMTTKT 192

Query: 181 NRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN 240
            ++  + I+  I+EL A DLLAKYTHYCQ+CGKGFKRDANLRMHMRAHGDEYK + AL+N
Sbjct: 193 TQDHRNPIN--IVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSN 250

Query: 241 PLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKM 300
           P K +   + N ++  IK    YSCPQEGCRWN+KH KFQPLKS+IC KNH+KR+HCPKM
Sbjct: 251 PEKSHRKDLSNISKMGIK----YSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKM 306

Query: 301 YVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVN 360
           YVCK C+RK+FSVLSDLRTHEKHCGD+KW CSCGTTFSRKDKLMGHVALFVGHTPA+  +
Sbjct: 307 YVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHTPAMG-S 365

Query: 361 STNMYGQK 368
           ST   G++
Sbjct: 366 STKFLGKQ 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541448|ref|XP_003539188.1| PREDICTED: uncharacterized protein LOC100802399 [Glycine max]

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/366 (51%), Positives = 234/366 (63%), Gaps = 44/366 (12%)

Query: 40  YSVFFLKEKIHQLQSVVTVLVS-QGQATESTSIAMANMGSLIQEIIITASSLMVTCQQMS 98
           + +  LK+K+ QL ++V VLVS Q    EST  A++ + + IQEII+ A+S+  TCQQM 
Sbjct: 53  FYLSLLKDKLGQLHNLVGVLVSPQQNLPESTPTAISTINNTIQEIIVAATSMRFTCQQMI 112

Query: 99  TLPAASISGNNNITANEIFQQQQHVG----PNNQER----------------SSGQQGYY 138
           +   +S SG N I  NE+ QQQ   G    P++ E                 S   +G  
Sbjct: 113 S---SSPSGTNTI--NELHQQQIDHGRLLPPSHHESNFINNNRGVPSNINIVSHINRGQS 167

Query: 139 FTEAFDTCYGDNN-DYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVA 197
           F    ++  G+ + D+     +N    NN  N  D+    +  N     E   DIIEL A
Sbjct: 168 FLS--NSIEGEASLDWFAESYNNSNSGNNYFNPKDDEAANIINN--IMGETSDDIIELDA 223

Query: 198 GDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAI 257
            DLLAKY+++CQVCGKGFKRDANLRMHMRAHG+EYKT+AAL NP+KKN     N  ES +
Sbjct: 224 ADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSAALRNPMKKN-----NKKESNL 278

Query: 258 -------KIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQ 310
                   + ++YSCPQ+GCRWN++HAKFQPLKSMICAKNHYKRSHCPKMY+C RCN+KQ
Sbjct: 279 LFLGAEGSVTKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYMCNRCNQKQ 338

Query: 311 FSVLSDLRTHEKHCGDL-KWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKG 369
           FSVLSDLRTHEKHCGD  KWQCSCGTTFSRKDKLMGH+ LF GHTP  N+N  + Y  K 
Sbjct: 339 FSVLSDLRTHEKHCGDYPKWQCSCGTTFSRKDKLMGHITLFAGHTPVPNINGMSSYMGKS 398

Query: 370 AATGTN 375
                N
Sbjct: 399 EVQQNN 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688719|ref|NP_197680.2| C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana] gi|110743777|dbj|BAE99724.1| hypothetical protein [Arabidopsis thaliana] gi|332005711|gb|AED93094.1| C2H2 and C2HC zinc finger-containing protein [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/331 (51%), Positives = 215/331 (64%), Gaps = 35/331 (10%)

Query: 37  SLLYSVFFLKEKIHQLQSVVTV-LVSQG---QATESTSIAMANMGSLIQEIIITASSLMV 92
           SLLY++  L EK+HQ+QS+V+  +VS     Q++ STS+A+AN+GSL+QEII  ASS++ 
Sbjct: 55  SLLYNLSTLHEKVHQIQSLVSFYMVSTNNINQSSGSTSLAVANIGSLVQEIITAASSMLY 114

Query: 93  TCQQM---STLPAASISGNNNITANEIFQQQQHVGPNNQERSSGQQGYYFTEAFDTCYG- 148
           TCQQ+   S      I  +  + A  +   +Q   P          G+ F +     +G 
Sbjct: 115 TCQQLQIGSNNNNNDIDNDQTVDAMVLEFSRQETDP----------GHDFVQESTNLFGV 164

Query: 149 DNNDYVTTHDHNRGMHNNVINSNDNTNITVAENRESFSEIDCDIIELVAGDLLAKYTHYC 208
                ++  D N   +N      +  N    ++R   S    DI+EL   DLLAKYTHYC
Sbjct: 165 QERGQISFPDQNLDWYNT-----ETINPKKDKHRSKPSSGSYDILELDVADLLAKYTHYC 219

Query: 209 QVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPL---KKNGSSMGNNNESAIKIARKYSC 265
           Q+CGKGFKRDANLRMHMRAHGDEYKT  AL +P    KK G S+  +          YSC
Sbjct: 220 QICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGYSLKKHY---------YSC 270

Query: 266 PQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCG 325
           PQ GCRWN++H KFQPLKS+ICAKNHYKRSHCPKMY+C+RC+ K FSVLSDLRTHEKHCG
Sbjct: 271 PQHGCRWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTHEKHCG 330

Query: 326 DLKWQCSCGTTFSRKDKLMGHVALFVGHTPA 356
           D+KW CSCGT FSRKDKLM HV+LF+GH PA
Sbjct: 331 DIKWVCSCGTKFSRKDKLMSHVSLFLGHVPA 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2172701	373	AT5G22890 [Arabidopsis thalian	0.796	0.806	0.469	3e-69
UNIPROTKB|Q943I6	522	LOC_Os01g65080 "Zinc finger pr	0.804	0.582	0.422	2.4e-60
TAIR|locus:2036303	499	STOP1 "AT1G34370" [Arabidopsis	0.502	0.380	0.555	2.7e-59
UNIPROTKB|Q2QX40	465	STAR3 "Zinc finger protein STA	0.457	0.372	0.564	4.8e-55
TAIR|locus:2091931	412	WIP4 "AT3G20880" [Arabidopsis	0.370	0.339	0.376	2.5e-25
TAIR|locus:2205334	302	DOT5 "DEFECTIVELY ORGANIZED TR	0.388	0.486	0.383	3.5e-25
TAIR|locus:2200003	337	WIP3 "AT1G08290" [Arabidopsis	0.359	0.403	0.395	7.8e-23
TAIR|locus:2008386	303	TT1 "transparent testa 1" [Ara	0.378	0.471	0.386	3.4e-22
TAIR|locus:2008281	337	WIP5 "AT1G51220" [Arabidopsis	0.357	0.400	0.382	1.1e-21
TAIR|locus:2076641	383	NTT "AT3G57670" [Arabidopsis t	0.351	0.347	0.380	3.1e-21

TAIR|locus:2172701 AT5G22890 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 153/326 (46%), Positives = 188/326 (57%)

Query:    37 SLLYSVFFLKEKIHXXXXXXXXXXXXXX-ATESTSIAMANMGSL--IQEIIITASSLMVT 93
             SLLY++  L EK+H                 +S+      + ++  + + IITA+S M  
Sbjct:    55 SLLYNLSTLHEKVHQIQSLVSFYMVSTNNINQSSGSTSLAVANIGSLVQEIITAASSM-- 112

Query:    94 CQQMSTLPAASISGNNNITANEIFQQQQHVGPNNQE--RSSGQQGYYFTEAFDTCYG-DN 150
                + T     I  NNN   N      Q V     E  R     G+ F +     +G   
Sbjct:   113 ---LYTCQQLQIGSNNN---NNDIDNDQTVDAMVLEFSRQETDPGHDFVQESTNLFGVQE 166

Query:   151 NDYVTTHDHNRGMHXXXXXXXXXXXXXXAENRESFSEIDCDIIELVAGDLLAKYTHYCQV 210
                ++  D N   +               ++R   S    DI+EL   DLLAKYTHYCQ+
Sbjct:   167 RGQISFPDQNLDWYNTETINPKKD-----KHRSKPSSGSYDILELDVADLLAKYTHYCQI 221

Query:   211 CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGC 270
             CGKGFKRDANLRMHMRAHGDEYKT  AL +P     +S       ++K    YSCPQ GC
Sbjct:   222 CGKGFKRDANLRMHMRAHGDEYKTREALISP-----TSQDKKGGYSLK-KHYYSCPQHGC 275

Query:   271 RWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQ 330
             RWN++H KFQPLKS+ICAKNHYKRSHCPKMY+C+RC+ K FSVLSDLRTHEKHCGD+KW 
Sbjct:   276 RWNQRHEKFQPLKSVICAKNHYKRSHCPKMYMCRRCSVKHFSVLSDLRTHEKHCGDIKWV 335

Query:   331 CSCGTTFSRKDKLMGHVALFVGHTPA 356
             CSCGT FSRKDKLM HV+LF+GH PA
Sbjct:   336 CSCGTKFSRKDKLMSHVSLFLGHVPA 361

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q943I6 LOC_Os01g65080 "Zinc finger protein STOP1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 136/322 (42%), Positives = 187/322 (58%)

Query:    65 ATESTSIAMANMGSLIQEIIITASSLMVTCQQ-MSTLPAASISGNNNITANEIFQQQQHV 123
             A     +  A++  +I ++I TA SL+ + +  +S+ PA     +N + A  I     ++
Sbjct:   133 AQAKQQLVTADLTCIIIQLISTAGSLLPSMKNPISSNPALRHL-SNTLCAPMILGTNCNL 191

Query:   124 GPN-NQERS----SGQQGYY-FTEAFDTCYGDNNDYVTTHDH--NRGMHXXXXXXXXXXX 175
              P+ N E +    S    Y     + +T   ++++ +   +     G             
Sbjct:   192 RPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMNCQNPCGGEGSEPIPMEDHDVKE 251

Query:   176 XXXAENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTT 235
                   RE+       +++L   ++LA +TH+C +CGKGFKRDANLRMHMR HGDEYKT 
Sbjct:   252 SDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTA 311

Query:   236 AALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRS 295
             AAL  P K   SS+    ESA  + R YSCP  GC+ NK+H KFQPLK+++C KNHYKRS
Sbjct:   312 AALAKPSKD--SSL----ESA-PVTR-YSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRS 363

Query:   296 HCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTP 355
             HC K Y C RCN K+FSV++DL+THEKHCG  KW CSCGTTFSRKDKL GHVALF GHTP
Sbjct:   364 HCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTP 423

Query:   356 AVNVNSTNMYGQKGAATGTNAI 377
             A+ ++   + G      G+ A+
Sbjct:   424 ALPMDDIKVTGASEQPQGSEAM 445

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2036303 STOP1 "AT1G34370" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 111/200 (55%), Positives = 141/200 (70%)

Query:   180 ENRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALT 239
             E  E+      +I++L   ++LA +TH+C +CGKGFKRDANLRMHMR HGDEYKT AAL 
Sbjct:   218 EEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALA 277

Query:   240 NPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPK 299
              P   N  S+  +    IK   +YSCP  GC+ NK+H KFQPLK+++C KNHYKR+HC K
Sbjct:   278 KP---NKESVPGSEPMLIK---RYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDK 331

Query:   300 MYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNV 359
              + C RC+ K+FSV++DL+THEKHCG  KW CSCGTTFSRKDKL GH+ALF GHTPA+ +
Sbjct:   332 SFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPL 391

Query:   360 NSTNMYG----QKGAATGTN 375
               T        Q+G++ G N
Sbjct:   392 EETKPSASTSTQRGSSEGGN 411

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0010447 "response to acidity" evidence=IMP

UNIPROTKB|Q2QX40 STAR3 "Zinc finger protein STAR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 101/179 (56%), Positives = 129/179 (72%)

Query:   180 ENRESFSEID-CDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAAL 238
             EN  + +E +  ++++L   ++LA +TH+C +CGKGFKRDANLRMHMR HGDEYK+ AAL
Sbjct:   202 ENPAAAAEEEKYEVLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAAL 261

Query:   239 TNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCP 298
               P            E   +  R+YSCP  GC+ N+ HA FQPLK+++C KNHYKRSHC 
Sbjct:   262 AKP-----PPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCE 316

Query:   299 KMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHTPAV 357
             K +VC RC  K+FSV++DL+THEKHCG  +W CSCGT+FSRKDKL  HVALF GH PA+
Sbjct:   317 KRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPAL 375

GO:0005634 "nucleus" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2091931 WIP4 "AT3G20880" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 58/154 (37%), Positives = 78/154 (50%)

Query:   208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
             C +C K F R  N++MHM  HG +Y+          K   S+     +A+     Y C  
Sbjct:   258 CPLCFKTFNRYNNMQMHMWGHGSQYR----------KGPESLRGTQPTAMLKLPCYCCAP 307

Query:   268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
              GC+ N  H + +PLK     + HYKR H  + + C+RC  K F+V  D RTHEK+CG L
Sbjct:   308 -GCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCG-KAFAVKGDWRTHEKNCGKL 365

Query:   328 KWQCSCGTTFSRKDKLMGHVALFV-GHTPAVNVN 360
              W CSCG+ F  K  L  HV  F  GH P   ++
Sbjct:   366 -WYCSCGSDFKHKRSLKDHVKAFGNGHVPCCGID 398

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205334 DOT5 "DEFECTIVELY ORGANIZED TRIBUTARIES 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 61/159 (38%), Positives = 79/159 (49%)

Query:   208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
             C VC K F R  N++MHM  HG +Y+         K   S  G  + S+I     Y C  
Sbjct:   103 CSVCNKTFNRFNNMQMHMWGHGSQYR---------KGPESLRGTKSSSSILRLPCYCCA- 152

Query:   268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
             EGC+ N  H + +PLK     + HYKR H  K + C++   K F+V  D RTHEK+CG L
Sbjct:   153 EGCKNNIDHPRSKPLKDFRTLQTHYKRKHGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKL 212

Query:   328 KWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYG 366
              W C CG+ F  K  L  HV  F G   A +  S  + G
Sbjct:   213 -WFCVCGSDFKHKRSLKDHVRAF-GDGHAAHTVSDRVVG 249

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2200003 WIP3 "AT1G08290" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 59/149 (39%), Positives = 78/149 (52%)

Query:   208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
             C +C K F R  N++MHM  HG E++  A   + LK      G    +AI     Y C  
Sbjct:   182 CSICSKTFNRYNNMQMHMWGHGSEFRKGA---DSLK------GTIQPAAILRLPCYCCA- 231

Query:   268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
             EGC+ N  H + +PLK     + HYKR H  K + C +C  K  +V  D RTHEK+CG L
Sbjct:   232 EGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCG-KALAVKGDWRTHEKNCGKL 290

Query:   328 KWQCSCGTTFSRKDKLMGHVALF-VGHTP 355
              W C+CG+ F  K  L  H+  F  GH+P
Sbjct:   291 -WYCTCGSDFKHKRSLKDHIRSFGSGHSP 318

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2008386 TT1 "transparent testa 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 61/158 (38%), Positives = 79/158 (50%)

Query:   200 LLAKYTHY-CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIK 258
             +L  +TH+ C VC K F R  NL+MHM  HG +Y+          K   S+      A+ 
Sbjct:   138 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYR----------KGPESLKGTQPRAML 187

Query:   259 IARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLR 318
                 Y C  EGCR +  H + +PLK     + HYKR H  K + C+ C  K  +V  D R
Sbjct:   188 GIPCYCCV-EGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCG-KLLAVKGDWR 245

Query:   319 THEKHCGDLKWQCSCGTTFSRKDKLMGHVALF-VGHTP 355
             THEK+CG  +W C CG+ F  K  L  HV  F  GH P
Sbjct:   246 THEKNCGK-RWVCVCGSDFKHKRSLKDHVKAFGSGHGP 282

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

TAIR|locus:2008281 WIP5 "AT1G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/149 (38%), Positives = 74/149 (49%)

Query:   208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
             C +C K F R  N++MHM  HG +Y+         K   S  G      +++     C  
Sbjct:   180 CPLCFKTFNRYNNMQMHMWGHGSQYR---------KGPESLRGTQPTGMLRLP--CFCCA 228

Query:   268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
              GC+ N  H + +PLK     + HYKR H  K + C+ C  K F+V  D RTHEK+CG L
Sbjct:   229 PGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCG-KAFAVKGDWRTHEKNCGKL 287

Query:   328 KWQCSCGTTFSRKDKLMGHVALFV-GHTP 355
              W CSCG+ F  K  L  HV  F  GH P
Sbjct:   288 -WYCSCGSDFKHKRSLKDHVKAFGNGHVP 315

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2076641 NTT "AT3G57670" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 56/147 (38%), Positives = 74/147 (50%)

Query:   208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
             C VC K F R  N++MHM  HG +Y+          K   S+     + +     Y C  
Sbjct:   219 CPVCFKTFNRYNNMQMHMWGHGSQYR----------KGPESLRGTQPTGMLRLPCYCCAP 268

Query:   268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDL 327
              GCR N  H + +PLK     + HYKR H  K ++C++C  K F+V  D RTHEK+CG L
Sbjct:   269 -GCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCG-KAFAVRGDWRTHEKNCGKL 326

Query:   328 KWQCSCGTTFSRKDKLMGHVALFV-GH 353
              W C CG+ F  K  L  H+  F  GH
Sbjct:   327 -WYCICGSDFKHKRSLKDHIKAFGNGH 352

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0010500 "transmitting tissue development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.96
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.89
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.87
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.81
KOG3608	467	consensus Zn finger proteins [General function pre	99.79
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.73
KOG3608	467	consensus Zn finger proteins [General function pre	99.72
KOG3576	267	consensus Ovo and related transcription factors [T	99.66
KOG3576	267	consensus Ovo and related transcription factors [T	99.6
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.54
PLN03086	567	PRLI-interacting factor K; Provisional	99.29
PHA00733	128	hypothetical protein	99.03
PLN03086	567	PRLI-interacting factor K; Provisional	99.01
PHA02768	55	hypothetical protein; Provisional	98.97
PHA00733	128	hypothetical protein	98.82
PHA02768	55	hypothetical protein; Provisional	98.78
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.71
KOG3993	500	consensus Transcription factor (contains Zn finger	98.46
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.42
PHA00616	44	hypothetical protein	98.3
KOG3993	500	consensus Transcription factor (contains Zn finger	98.15
PHA00732	79	hypothetical protein	98.14
PHA00616	44	hypothetical protein	98.06
PHA00732	79	hypothetical protein	97.98
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.83
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.68
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.62
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.51
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.39
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.27
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.18
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.14
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.06
PRK04860	160	hypothetical protein; Provisional	96.89
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.85
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.84
smart00355	26	ZnF_C2H2 zinc finger.	96.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.41
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.41
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.21
smart00355	26	ZnF_C2H2 zinc finger.	96.11
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.08
PRK04860	160	hypothetical protein; Provisional	96.0
COG5048	467	FOG: Zn-finger [General function prediction only]	95.99
COG5048	467	FOG: Zn-finger [General function prediction only]	95.97
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.23
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.06
KOG1146	1406	consensus Homeobox protein [General function predi	94.93
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.86
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.62
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	94.32
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.27
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	93.54
KOG1146	1406	consensus Homeobox protein [General function predi	93.1
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.88
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.52
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.27
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.88
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	88.77
KOG2893	341	consensus Zn finger protein [General function pred	87.87
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	86.81
KOG2893	341	consensus Zn finger protein [General function pred	86.53
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	86.06
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	85.29
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.06
COG5236	493	Uncharacterized conserved protein, contains RING Z	84.73
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	84.31
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	83.92
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.0

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.96  E-value=1.6e-30  Score=232.94  Aligned_cols=137  Identities=22%  Similarity=0.373  Sum_probs=127.4

Q ss_pred             cCCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCC
Q 044007          200 LLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKF  279 (378)
Q Consensus       200 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~  279 (378)
                      ......|+|..|||.+.+.++|.+|..+|...                          ...+.+.|++|||.|.+-.+  
T Consensus       125 ~~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~--------------------------~s~ka~~C~~C~K~YvSmpA--  176 (279)
T KOG2462|consen  125 AAKHPRYKCPECGKSYSTSSNLSRHKQTHRSL--------------------------DSKKAFSCKYCGKVYVSMPA--  176 (279)
T ss_pred             cccCCceeccccccccccccccchhhcccccc--------------------------cccccccCCCCCceeeehHH--
Confidence            44567899999999999999999999999765                          11377999999999999999  


Q ss_pred             CcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcc
Q 044007          280 QPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAV  357 (378)
Q Consensus       280 k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~  357 (378)
                              ++.|+++|.  -+++|.+|| |.|++.+.|+.|+| |+|||||.|. |+|+|..+++|+.||++|.+.|+|.
T Consensus       177 --------LkMHirTH~--l~c~C~iCG-KaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~q  245 (279)
T KOG2462|consen  177 --------LKMHIRTHT--LPCECGICG-KAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQ  245 (279)
T ss_pred             --------HhhHhhccC--CCccccccc-ccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcccc
Confidence                    999999986  589999999 99999999999999 9999999999 9999999999999999999999999


Q ss_pred             cCcchhccCChhhhhhhh
Q 044007          358 NVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       358 C~~C~k~F~~~~~L~~H~  375 (378)
                      |..|+|.|..++.|.||-
T Consensus       246 C~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  246 CPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             CcchhhHHHHHHHHHHhh
Confidence            999999999999999994

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.89  E-value=6.5e-24  Score=190.51  Aligned_cols=127  Identities=27%  Similarity=0.494  Sum_probs=109.7

Q ss_pred             CCCCcCCcchhhHHHhhhcc----------CCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccc
Q 044007          181 NRESFSEIDCDIIELVAGDL----------LAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMG  250 (378)
Q Consensus       181 ~~~~~~~~~c~~~~~~~~~~----------~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~  250 (378)
                      ...-|.|..|++......++          ...+.+.|++|||.|.+-..|++|+|+|+                     
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------------  185 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------------  185 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------------
Confidence            34456666776655544433          34678899999999999999999999997                     


Q ss_pred             cchhhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCe
Q 044007          251 NNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKW  329 (378)
Q Consensus       251 ~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~  329 (378)
                                -+++|.+|||.|.+..-          |+-|+|+|+|||||.|..|+ |.|..+++|+.||+ |.+.|+|
T Consensus       186 ----------l~c~C~iCGKaFSRPWL----------LQGHiRTHTGEKPF~C~hC~-kAFADRSNLRAHmQTHS~~K~~  244 (279)
T KOG2462|consen  186 ----------LPCECGICGKAFSRPWL----------LQGHIRTHTGEKPFSCPHCG-KAFADRSNLRAHMQTHSDVKKH  244 (279)
T ss_pred             ----------CCcccccccccccchHH----------hhcccccccCCCCccCCccc-chhcchHHHHHHHHhhcCCccc
Confidence                      46889999999988877          88899999999999999999 99999999999999 9999999


Q ss_pred             ecc-CCCccCChHHHHHHHHH
Q 044007          330 QCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       330 ~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      .|. |+|+|.+++.|.+|...
T Consensus       245 qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  245 QCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cCcchhhHHHHHHHHHHhhhh
Confidence            999 99999999999999753

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.87  E-value=2.4e-23  Score=205.80  Aligned_cols=76  Identities=29%  Similarity=0.578  Sum_probs=74.3

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhc
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      +|.|+.|+ |.|...+.|.+|.- |+|.+||.|. |.|+|+.+.+|..|+|+|+|||||.|+.|+|+|.-.++.-.||-
T Consensus       894 myaCDqCD-K~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  894 MYACDQCD-KAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             cchHHHHH-HHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchHhhhc
Confidence            79999999 99999999999999 9999999999 99999999999999999999999999999999999999999983

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.81  E-value=7.1e-21  Score=191.54  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=73.2

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCC----CCcccC---cchhccCChhh
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH----TPAVNV---NSTNMYGQKGA  370 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~----kpy~C~---~C~k~F~~~~~  370 (378)
                      |-+|-+|. +..+=.+.|+.|.| |+||+||+|. ||++|+++.+|+.||-+|...    -+|.|+   +|-+.|+....
T Consensus       605 PNqCiiC~-rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  605 PNQCIICL-RVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             ccceeeee-ecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccccccccc
Confidence            67899999 99999999999999 9999999999 999999999999999999754    358899   99999999999


Q ss_pred             hhhhhcCC
Q 044007          371 ATGTNAIT  378 (378)
Q Consensus       371 L~~H~rv~  378 (378)
                      |..|.|||
T Consensus       684 lpQhIriH  691 (958)
T KOG1074|consen  684 LPQHIRIH  691 (958)
T ss_pred             ccceEEee
Confidence            99999986

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.79  E-value=2.1e-20  Score=171.84  Aligned_cols=167  Identities=17%  Similarity=0.304  Sum_probs=130.8

Q ss_pred             cccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhh-cCCCcccCCCCCccccccccC-------C
Q 044007          208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAI-KIARKYSCPQEGCRWNKKHAK-------F  279 (378)
Q Consensus       208 C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h-~~~k~~~C~~C~k~F~~~~~~-------~  279 (378)
                      ...|-+.|..+++|++|+|.|++++...|+.|+..|.+...|..|.++.- ....+|.|..|.|+|.+...+       .
T Consensus       182 W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv  261 (467)
T KOG3608|consen  182 WAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV  261 (467)
T ss_pred             chhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh
Confidence            35688999999999999999999999999999999999998888876543 344679999999999876442       2


Q ss_pred             Ccccchhh---------cccccc-cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc---CCCccCChHHHHH
Q 044007          280 QPLKSMIC---------AKNHYK-RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS---CGTTFSRKDKLMG  345 (378)
Q Consensus       280 k~~~c~~c---------~~~H~~-~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~---C~k~F~~~~~L~~  345 (378)
                      -+|+|..|         +.+|++ +|...|||+|+.|. +.|.+.++|.+|.. |. +-.|.|+   |..+|.+...+++
T Consensus       262 n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd-~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~  339 (467)
T KOG3608|consen  262 NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECD-TRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR  339 (467)
T ss_pred             hcccccccccCCCChHHHHHHHHhhhccCCCccccchh-hhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence            34566655         346765 55567888888888 88888888888888 77 6668885   8888888888888


Q ss_pred             HHH-HhcCCC--CcccCcchhccCChhhhhhhhc
Q 044007          346 HVA-LFVGHT--PAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       346 H~~-~H~~~k--py~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |++ +|.|..  +|.|..|++.|++..+|.+|-+
T Consensus       340 H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~  373 (467)
T KOG3608|consen  340 HFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM  373 (467)
T ss_pred             HHHHhccCCCCCceeeecchhhhccchhHHHHHH
Confidence            885 444544  5999999999999999988854

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.73  E-value=2.5e-18  Score=173.40  Aligned_cols=72  Identities=18%  Similarity=0.315  Sum_probs=56.0

Q ss_pred             ceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCC----CcccCC---CCCcccccccc
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIA----RKYSCP---QEGCRWNKKHA  277 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~----k~~~C~---~C~k~F~~~~~  277 (378)
                      +-+|-+|-++...++.|++|.|+|+||+||+|.+|+..|.++.+|+.| +.+|+..    -.|+|+   +|-+.|...-.
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH-~~vHka~p~~R~q~ScP~~~ic~~kftn~V~  683 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAH-MSVHKAKPPARVQFSCPSTFICQKKFTNAVT  683 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhc-ccccccCccccccccCCchhhhccccccccc
Confidence            567888888888888888888888888888888888888888888887 4455543    457788   88888877655

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.72  E-value=1.9e-18  Score=159.11  Aligned_cols=177  Identities=18%  Similarity=0.313  Sum_probs=149.0

Q ss_pred             cccccCCCCcCCcchhhHHHhhhcc---------CCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCC
Q 044007          176 ITVAENRESFSEIDCDIIELVAGDL---------LAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNG  246 (378)
Q Consensus       176 ~~~~~~~~~~~~~~c~~~~~~~~~~---------~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~  246 (378)
                      ++.+..++...|..|+..+.....+         +...+|.|..|.|.|.+...|+.||+.|-.-  |+|++|+......
T Consensus       199 ~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~--ykCplCdmtc~~~  276 (467)
T KOG3608|consen  199 IRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC--YKCPLCDMTCSSA  276 (467)
T ss_pred             HHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc--ccccccccCCCCh
Confidence            3345566777788887766554433         4456899999999999999999999999876  8999999999999


Q ss_pred             CccccchhhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCC--CCCccCCCHHHHHHHHh--
Q 044007          247 SSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHEK--  322 (378)
Q Consensus       247 ~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~--  322 (378)
                      ++|..|++..|...|||+|+.|++.|.+.+.          +.+|...|. +..|.|+.  |. ..|.+...|++|++  
T Consensus       277 ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esd----------L~kH~~~HS-~~~y~C~h~~C~-~s~r~~~q~~~H~~ev  344 (467)
T KOG3608|consen  277 SSLTTHIRYRHSKDKPFKCDECDTRCVRESD----------LAKHVQVHS-KTVYQCEHPDCH-YSVRTYTQMRRHFLEV  344 (467)
T ss_pred             HHHHHHHHhhhccCCCccccchhhhhccHHH----------HHHHHHhcc-ccceecCCCCCc-HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998          777877776 67899987  99 99999999999999  


Q ss_pred             ccCCC--Ceecc-CCCccCChHHHHHHH-HHh-----cCCCCcccCcchhccC
Q 044007          323 HCGDL--KWQCS-CGTTFSRKDKLMGHV-ALF-----VGHTPAVNVNSTNMYG  366 (378)
Q Consensus       323 H~g~k--p~~C~-C~k~F~~~~~L~~H~-~~H-----~~~kpy~C~~C~k~F~  366 (378)
                      |.|..  +|.|- |++.|++..+|..|+ +.|     .|.+.|.-.+|...|-
T Consensus       345 hEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m  397 (467)
T KOG3608|consen  345 HEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM  397 (467)
T ss_pred             ccCCCCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence            65654  59999 999999999999997 556     3566677777766654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.66  E-value=1e-17  Score=143.58  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=93.7

Q ss_pred             CCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCcc
Q 044007          260 ARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTF  337 (378)
Q Consensus       260 ~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F  337 (378)
                      ...|.|.+|+|.|.....          +.+|+++|..-|.|-|..|| |.|...-+|++|+| |+|.+||+|. |+|+|
T Consensus       115 ~d~ftCrvCgK~F~lQRm----------lnrh~kch~~vkr~lct~cg-kgfndtfdlkrh~rthtgvrpykc~~c~kaf  183 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRM----------LNRHLKCHSDVKRHLCTFCG-KGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF  183 (267)
T ss_pred             CCeeeeehhhhhhhHHHH----------HHHHhhhccHHHHHHHhhcc-CcccchhhhhhhhccccCccccchhhhhHHH
Confidence            366999999999998888          77888888888899999999 99999999999999 9999999999 99999


Q ss_pred             CChHHHHHHH-HHhc----------CCCCcccCcchhccCChhhhhhhhcC
Q 044007          338 SRKDKLMGHV-ALFV----------GHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       338 ~~~~~L~~H~-~~H~----------~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      +++..|..|+ ++|-          .+|.|+|++||..-.....+.-|.++
T Consensus       184 tqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  184 TQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             HhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence            9999999998 5562          35789999999987777777666543

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.60  E-value=2.3e-16  Score=135.34  Aligned_cols=113  Identities=28%  Similarity=0.524  Sum_probs=98.9

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCcc
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPL  282 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~  282 (378)
                      ...|.|.+|+|.|.-...|.+||+-|...                             +.|-|..||+.|+....     
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~v-----------------------------kr~lct~cgkgfndtfd-----  160 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDV-----------------------------KRHLCTFCGKGFNDTFD-----  160 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHH-----------------------------HHHHHhhccCcccchhh-----
Confidence            45689999999999999999999999887                             77889999999988888     


Q ss_pred             cchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh--cc----------CCCCeecc-CCCccCChHHHHHHHHH
Q 044007          283 KSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK--HC----------GDLKWQCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       283 ~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H~----------g~kp~~C~-C~k~F~~~~~L~~H~~~  349 (378)
                           +++|+++|+|-+||+|..|+ |.|.++..|..|++  |.          .+|.|.|+ ||.+-.+...+..|++.
T Consensus       161 -----lkrh~rthtgvrpykc~~c~-kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  161 -----LKRHTRTHTGVRPYKCSLCE-KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             -----hhhhhccccCccccchhhhh-HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence                 89999999999999999999 99999999999987  54          35679999 99998899999999988


Q ss_pred             hcCCCC
Q 044007          350 FVGHTP  355 (378)
Q Consensus       350 H~~~kp  355 (378)
                      |..--|
T Consensus       235 ~hp~Sp  240 (267)
T KOG3576|consen  235 HHPFSP  240 (267)
T ss_pred             cCCCCH
Confidence            865433

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.54  E-value=7.1e-16  Score=153.37  Aligned_cols=103  Identities=23%  Similarity=0.463  Sum_probs=88.6

Q ss_pred             ccCCCCCccccccccCCCcccchhhccccccccc--CCCceecCCCCCccCCCHHHHHHHHh-cc-------------CC
Q 044007          263 YSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSH--CPKMYVCKRCNRKQFSVLSDLRTHEK-HC-------------GD  326 (378)
Q Consensus       263 ~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~--~~k~~~C~~C~~k~F~~~~~L~~H~~-H~-------------g~  326 (378)
                      ..|++|.+.+.+-..          ++.|++..|  .+-.|.|..|. ..|..+..|.+||. |.             +.
T Consensus       211 ltcpycdrgykrlts----------lkeHikyrhekne~nfsC~lCs-ytFAyRtQLErhm~~hkpg~dqa~sltqsa~l  279 (1007)
T KOG3623|consen  211 LTCPYCDRGYKRLTS----------LKEHIKYRHEKNEPNFSCMLCS-YTFAYRTQLERHMQLHKPGGDQAISLTQSALL  279 (1007)
T ss_pred             hcchhHHHHHHHHHH----------HHHHHHHHHhhCCCCCcchhhh-hhhhhHHHHHHHHHhhcCCCcccccccchhhh
Confidence            578999888776666          666765444  35679999999 99999999999998 74             34


Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      +.|+|. |||+|+.+.+|+.|+|||+|||||.|+.|+|+|.-.+++-.|+-
T Consensus       280 RKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  280 RKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            679999 99999999999999999999999999999999999999988873

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.29  E-value=5.6e-12  Score=126.63  Aligned_cols=140  Identities=14%  Similarity=0.226  Sum_probs=106.3

Q ss_pred             ceecccccccccCHHHHHHHHHHhCCCCccccCC--CCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCcc
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGDEYKTTAAL--TNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPL  282 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~--c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~  282 (378)
                      .-.|..|.+.. ...+|..|.....- ....|+.  |+..|.. ..+          .+++.|+.|++.|. ...     
T Consensus       407 ~V~C~NC~~~i-~l~~l~lHe~~C~r-~~V~Cp~~~Cg~v~~r-~el----------~~H~~C~~Cgk~f~-~s~-----  467 (567)
T PLN03086        407 TVECRNCKHYI-PSRSIALHEAYCSR-HNVVCPHDGCGIVLRV-EEA----------KNHVHCEKCGQAFQ-QGE-----  467 (567)
T ss_pred             eEECCCCCCcc-chhHHHHHHhhCCC-cceeCCcccccceeec-ccc----------ccCccCCCCCCccc-hHH-----
Confidence            34799998764 45677788754332 3456764  8877632 222          24478999999985 445     


Q ss_pred             cchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCC----------hHHHHHHHHHh
Q 044007          283 KSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSR----------KDKLMGHVALF  350 (378)
Q Consensus       283 ~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~----------~~~L~~H~~~H  350 (378)
                           ++.|+..+|  +++.|+ || +.+ .+..|..|++ |++++|+.|. |++.|..          ...|..|..++
T Consensus       468 -----LekH~~~~H--kpv~Cp-Cg-~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        468 -----MEKHMKVFH--EPLQCP-CG-VVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             -----HHHHHHhcC--CCccCC-CC-CCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc
Confidence                 778888875  899999 99 765 6789999999 9999999999 9999952          45899999997


Q ss_pred             cCCCCcccCcchhccCChhhhhhhh
Q 044007          351 VGHTPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       351 ~~~kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                       |.+++.|..||+.|..+ .|..|.
T Consensus       538 -G~rt~~C~~Cgk~Vrlr-dm~~H~  560 (567)
T PLN03086        538 -GSRTAPCDSCGRSVMLK-EMDIHQ  560 (567)
T ss_pred             -CCcceEccccCCeeeeh-hHHHHH
Confidence             99999999999998765 344453

>PHA00733 hypothetical protein

Probab=99.03  E-value=1.3e-10  Score=96.15  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=54.2

Q ss_pred             CCceecCCCCCccCCCHHHHHHH------HhccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhh
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTH------EKHCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGA  370 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H------~~H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~  370 (378)
                      .|++.|.+|. +.|.....|..|      +.+.+++||.|+ |++.|.+...|..|+++|  +.+|.|.+|++.|.....
T Consensus        38 ~~~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVK-TLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHh-hhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHH
Confidence            3567777777 666666555554      224457778888 888888888888888776  356888888888888888


Q ss_pred             hhhhhc
Q 044007          371 ATGTNA  376 (378)
Q Consensus       371 L~~H~r  376 (378)
                      |.+|++
T Consensus       115 L~~H~~  120 (128)
T PHA00733        115 TLDHVC  120 (128)
T ss_pred             HHHHHH
Confidence            887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.01  E-value=5.3e-10  Score=112.58  Aligned_cols=118  Identities=19%  Similarity=0.364  Sum_probs=89.5

Q ss_pred             eeccc--ccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCccc
Q 044007          206 HYCQV--CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLK  283 (378)
Q Consensus       206 ~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~  283 (378)
                      -.|+.  ||..|. +..|..|         +.|..|++.|. ...|..|....|   +++.|+ ||+.+ .+..      
T Consensus       434 V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~H---kpv~Cp-Cg~~~-~R~~------  491 (567)
T PLN03086        434 VVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVFH---EPLQCP-CGVVL-EKEQ------  491 (567)
T ss_pred             eeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHhcC---CCccCC-CCCCc-chhH------
Confidence            35774  888884 3445545         47999988885 466777754433   889999 99765 3445      


Q ss_pred             chhhcccccccccCCCceecCCCCCccCC----------CHHHHHHHHhccCCCCeecc-CCCccCChHHHHHHH-HHhc
Q 044007          284 SMICAKNHYKRSHCPKMYVCKRCNRKQFS----------VLSDLRTHEKHCGDLKWQCS-CGTTFSRKDKLMGHV-ALFV  351 (378)
Q Consensus       284 c~~c~~~H~~~h~~~k~~~C~~C~~k~F~----------~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~L~~H~-~~H~  351 (378)
                          +..|+..|...+++.|..|+ +.|.          ..+.|..|+...|.+++.|. ||+.|..+ .|..|+ .+|.
T Consensus       492 ----L~~H~~thCp~Kpi~C~fC~-~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        492 ----MVQHQASTCPLRLITCRFCG-DMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             ----HHhhhhccCCCCceeCCCCC-CccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence                78898888889999999999 8885          24689999995599999999 99998776 567787 5664

>PHA02768 hypothetical protein; Provisional

Probab=98.97  E-value=2.6e-10  Score=78.43  Aligned_cols=43  Identities=16%  Similarity=0.396  Sum_probs=35.0

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhh
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAAT  372 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~  372 (378)
                      -|.|+ ||+.|++.+.|..|+++|+  +||+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            37888 8888888888888888887  6888888888888877764

>PHA00733 hypothetical protein

Probab=98.82  E-value=3.2e-09  Score=87.86  Aligned_cols=84  Identities=19%  Similarity=0.266  Sum_probs=65.4

Q ss_pred             CcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccC
Q 044007          261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFS  338 (378)
Q Consensus       261 k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~  338 (378)
                      +++.|.+|.+.|.....+..+    .-+.+|+ .+++.+||.|+.|+ +.|.....|..|++ |  +.+|.|. |++.|.
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~----~~l~~~~-~~~~~kPy~C~~Cg-k~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~  110 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDES----SYLYKLL-TSKAVSPYVCPLCL-MPFSSSVSLKQHIRYT--EHSKVCPVCGKEFR  110 (128)
T ss_pred             hhHHHHHHhhhccChhhhcch----HHHHhhc-ccCCCCCccCCCCC-CcCCCHHHHHHHHhcC--CcCccCCCCCCccC
Confidence            778888888888765542111    0033443 34458999999999 99999999999999 7  4679999 999999


Q ss_pred             ChHHHHHHHHHhcC
Q 044007          339 RKDKLMGHVALFVG  352 (378)
Q Consensus       339 ~~~~L~~H~~~H~~  352 (378)
                      ....|..|++...+
T Consensus       111 ~~~sL~~H~~~~h~  124 (128)
T PHA00733        111 NTDSTLDHVCKKHN  124 (128)
T ss_pred             CHHHHHHHHHHhcC
Confidence            99999999976554

>PHA02768 hypothetical protein; Provisional

Probab=98.78  E-value=2.6e-09  Score=73.53  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=38.4

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHH
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLM  344 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~  344 (378)
                      .|.|+.|| +.|+..+.|..|++ |+  +||+|. |++.|.+.+.|.
T Consensus         5 ~y~C~~CG-K~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICG-EIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhC-CeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            48999999 99999999999999 98  799999 999999887764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.71  E-value=6.6e-09  Score=61.11  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             HHHHHHHHhcCCCCcccCcchhccCC
Q 044007          342 KLMGHVALFVGHTPAVNVNSTNMYGQ  367 (378)
Q Consensus       342 ~L~~H~~~H~~~kpy~C~~C~k~F~~  367 (378)
                      +|..|+++|+|++||.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47888888888888888888888863

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.46  E-value=1.3e-08  Score=96.86  Aligned_cols=182  Identities=16%  Similarity=0.063  Sum_probs=103.9

Q ss_pred             CCcCCcchhhHHHhhhccCC-------CCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCC--CCccccch
Q 044007          183 ESFSEIDCDIIELVAGDLLA-------KYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKN--GSSMGNNN  253 (378)
Q Consensus       183 ~~~~~~~c~~~~~~~~~~~~-------~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~--~~~l~~h~  253 (378)
                      .-|.|..|...+.+.-.+..       ...|+|++|+|.|....||..|.|+|.....-.-.--......  ...+....
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            34777778777666655544       3479999999999999999999999975511100000000000  00000000


Q ss_pred             hhh--hcCCCcccCCCCCccccccccCCCcccchhhcccccccccCC-----------------CceecCCCCCccCCCH
Q 044007          254 ESA--IKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCP-----------------KMYVCKRCNRKQFSVL  314 (378)
Q Consensus       254 ~~~--h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~-----------------k~~~C~~C~~k~F~~~  314 (378)
                      .+.  -....-|.|.+|+|.|.++..          |+.|+..|+..                 -.+-|+.|. -.+...
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAY----------LrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a-~h~~a~  414 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAY----------LRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVA-THSSAS  414 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHH----------HHHhHHhhhccccchhcccCcchhhcccccccccccc-cccccc
Confidence            000  011246889999999988877          55555544421                 123345554 333332


Q ss_pred             HHHHHHHh-ccC-CCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhh
Q 044007          315 SDLRTHEK-HCG-DLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       315 ~~L~~H~~-H~g-~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                      ..--.+.- +.+ .....|+ |+..+..+..--.|.+.-.-+.-|.|..|.-.|.+...|.+|.
T Consensus       415 ~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhi  478 (500)
T KOG3993|consen  415 DSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHI  478 (500)
T ss_pred             cccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHh
Confidence            22111111 222 1224566 7777777666666666555566788889999998888888885

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.42  E-value=1.3e-07  Score=55.57  Aligned_cols=24  Identities=42%  Similarity=1.057  Sum_probs=20.6

Q ss_pred             HHHHHHh-ccCCCCeecc-CCCccCC
Q 044007          316 DLRTHEK-HCGDLKWQCS-CGTTFSR  339 (378)
Q Consensus       316 ~L~~H~~-H~g~kp~~C~-C~k~F~~  339 (378)
                      +|..|++ |+|++||.|+ |+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            4788999 9999999999 9998864

...

>PHA00616 hypothetical protein

Probab=98.30  E-value=2.8e-07  Score=60.44  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      ||.|. ||+.|..+..|..|++.|+|++||.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            57777 7777777777777777777777777764

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.15  E-value=3.2e-07  Score=87.46  Aligned_cols=22  Identities=0%  Similarity=-0.129  Sum_probs=20.2

Q ss_pred             CcccCcchhccCChhhhhhhhc
Q 044007          355 PAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~r  376 (378)
                      -|.|..|+|.|+++..|++|..
T Consensus       356 i~~C~~C~KkFrRqAYLrKHql  377 (500)
T KOG3993|consen  356 IFSCHTCGKKFRRQAYLRKHQL  377 (500)
T ss_pred             eeecHHhhhhhHHHHHHHHhHH
Confidence            5999999999999999999964

>PHA00732 hypothetical protein

Probab=98.14  E-value=1.4e-06  Score=65.57  Aligned_cols=45  Identities=24%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh--ccCCCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK--HCGDLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~--H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      ||.|+.|+ +.|.....|+.|++  |.   ++.|+ |++.|.   .|..|++.+.
T Consensus         1 py~C~~Cg-k~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICG-FTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCC-CccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            46777777 77777777777776  43   34677 777776   3566765543

>PHA00616 hypothetical protein

Probab=98.06  E-value=1.6e-06  Score=56.89  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      ||+|..|| +.|...+.|..|++ |+|++++.|+
T Consensus         1 pYqC~~CG-~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCG-GIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhh-HHHhhHHHHHHHHHHhcCCCcccee
Confidence            68999999 99999999999999 9999999887

>PHA00732 hypothetical protein

Probab=97.98  E-value=5.5e-06  Score=62.42  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=26.4

Q ss_pred             Ceecc-CCCccCChHHHHHHHHH-hcCCCCcccCcchhccCChhhhhhhh
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVAL-FVGHTPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~-H~~~kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                      ||.|. |++.|.+...|..|++. |.   ++.|+.||+.|.   .|..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhh
Confidence            46676 77777777777777663 43   356777777766   355554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.83  E-value=1.5e-05  Score=45.25  Aligned_cols=23  Identities=48%  Similarity=1.006  Sum_probs=21.7

Q ss_pred             eecccccccccCHHHHHHHHHHh
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAH  228 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H  228 (378)
                      |+|+.|++.|.++..|..||+.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.68  E-value=1.3e-05  Score=73.99  Aligned_cols=69  Identities=16%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             CCCceecC--CCCCccCCCHHHHHHHHh--ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhh
Q 044007          297 CPKMYVCK--RCNRKQFSVLSDLRTHEK--HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAA  371 (378)
Q Consensus       297 ~~k~~~C~--~C~~k~F~~~~~L~~H~~--H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L  371 (378)
                      ++|||+|+  .|+ |.|.....|+-|+.  |...+...=+ =.          .|.-.-...|||+|++|+|+|..-..|
T Consensus       346 d~KpykCpV~gC~-K~YknqnGLKYH~lhGH~~~~~~~~p~p~----------~~~~F~~~~KPYrCevC~KRYKNlNGL  414 (423)
T COG5189         346 DGKPYKCPVEGCN-KKYKNQNGLKYHMLHGHQNQKLHENPSPE----------KMNIFSAKDKPYRCEVCDKRYKNLNGL  414 (423)
T ss_pred             cCceecCCCCCch-hhhccccchhhhhhccccCcccCCCCCcc----------ccccccccCCceeccccchhhccCccc
Confidence            46889995  588 88888888888887  6554433222 11          111113457999999999999999999


Q ss_pred             hhhhc
Q 044007          372 TGTNA  376 (378)
Q Consensus       372 ~~H~r  376 (378)
                      +=|+.
T Consensus       415 KYHr~  419 (423)
T COG5189         415 KYHRK  419 (423)
T ss_pred             eeccc
Confidence            88864

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.62  E-value=8.4e-05  Score=51.82  Aligned_cols=48  Identities=25%  Similarity=0.481  Sum_probs=32.4

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh--ccCC-CCeecc-CCCccCChHHHHHHHHHhc
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK--HCGD-LKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~--H~g~-kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      .|.|++|+ +. .....|..|..  |..+ +.+.|+ |...+.  .+|..|+..+.
T Consensus         2 ~f~CP~C~-~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCG-KG-FSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCC-Cc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            47788888 64 44567888866  6664 457888 877644  37777876553

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.51  E-value=6.8e-05  Score=42.43  Aligned_cols=20  Identities=40%  Similarity=0.883  Sum_probs=8.6

Q ss_pred             ecc-CCCccCChHHHHHHHHH
Q 044007          330 QCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       330 ~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      .|+ |++.|.++..|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    2 KCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHhH
Confidence            344 44444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.39  E-value=0.00016  Score=41.00  Aligned_cols=24  Identities=46%  Similarity=1.029  Sum_probs=20.3

Q ss_pred             eecccccccccCHHHHHHHHHHhC
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      |.|++|++.|.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998874

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.27  E-value=0.00024  Score=49.54  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=37.5

Q ss_pred             Ceecc-CCCccCChHHHHHHH-HHhcCC-CCcccCcchhccCChhhhhhhhcC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHV-ALFVGH-TPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~-~~H~~~-kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      .|.|+ |++. .+...|..|. ..|..+ +.+.|++|...++.  +|.+|.++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl~~   51 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHLNS   51 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHHHH
Confidence            48999 9995 4567899997 567654 67999999997664  99999864

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.18  E-value=0.00022  Score=42.00  Aligned_cols=26  Identities=38%  Similarity=0.684  Sum_probs=23.6

Q ss_pred             ceecccccccccCHHHHHHHHHHhCC
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      +|+|..|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999988753

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.14  E-value=0.00013  Score=67.55  Aligned_cols=68  Identities=21%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             cCCCcccCCC--CCccccccccCCCcccchhhcccccccccC-CCceec--CCCCCccCCCHHHHHHHHhccCCCCeecc
Q 044007          258 KIARKYSCPQ--EGCRWNKKHAKFQPLKSMICAKNHYKRSHC-PKMYVC--KRCNRKQFSVLSDLRTHEKHCGDLKWQCS  332 (378)
Q Consensus       258 ~~~k~~~C~~--C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~-~k~~~C--~~C~~k~F~~~~~L~~H~~H~g~kp~~C~  332 (378)
                      .++|||+|++  |.|.++....          ||.|+.--|+ .+...-  +.-- ..|           -...|||+|+
T Consensus       345 ~d~KpykCpV~gC~K~YknqnG----------LKYH~lhGH~~~~~~~~p~p~~~-~~F-----------~~~~KPYrCe  402 (423)
T COG5189         345 KDGKPYKCPVEGCNKKYKNQNG----------LKYHMLHGHQNQKLHENPSPEKM-NIF-----------SAKDKPYRCE  402 (423)
T ss_pred             ecCceecCCCCCchhhhccccc----------hhhhhhccccCcccCCCCCcccc-ccc-----------cccCCceecc
Confidence            4569999998  7788888887          7777543332 111110  0100 112           2346788888


Q ss_pred             -CCCccCChHHHHHHH
Q 044007          333 -CGTTFSRKDKLMGHV  347 (378)
Q Consensus       333 -C~k~F~~~~~L~~H~  347 (378)
                       |+|.++....|+.|.
T Consensus       403 vC~KRYKNlNGLKYHr  418 (423)
T COG5189         403 VCDKRYKNLNGLKYHR  418 (423)
T ss_pred             ccchhhccCccceecc
Confidence             888888877777774

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.06  E-value=0.00026  Score=41.65  Aligned_cols=23  Identities=9%  Similarity=0.018  Sum_probs=15.4

Q ss_pred             CcccCcchhccCChhhhhhhhcC
Q 044007          355 PAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      ||.|..|++.|.+...|.+|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            46666666666666666666654

>PRK04860 hypothetical protein; Provisional

Probab=96.89  E-value=0.00046  Score=59.26  Aligned_cols=36  Identities=33%  Similarity=0.762  Sum_probs=24.6

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCCh
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRK  340 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~  340 (378)
                      +|.|. |+ +   ....+++|.+ |+|+++|.|. |+..|...
T Consensus       119 ~Y~C~-C~-~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQ-E---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CC-C---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            67777 77 4   5556667777 7777777777 77766543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.85  E-value=0.00093  Score=37.69  Aligned_cols=20  Identities=40%  Similarity=0.880  Sum_probs=8.1

Q ss_pred             ecc-CCCccCChHHHHHHHHH
Q 044007          330 QCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       330 ~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      .|+ |++.|.+...|..|+++
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHHh
Confidence            444 44444444444444443

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.84  E-value=0.00042  Score=54.19  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=19.0

Q ss_pred             cCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHhccCCCCeecc-CCCccCChHH
Q 044007          264 SCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS-CGTTFSRKDK  342 (378)
Q Consensus       264 ~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~  342 (378)
                      +|..|+..|.....          +..|+...|+-.   .+ .. ..+.....+..+++..-...|.|. |++.|.+...
T Consensus         1 ~C~~C~~~f~~~~~----------l~~H~~~~H~~~---~~-~~-~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~   65 (100)
T PF12756_consen    1 QCLFCDESFSSVDD----------LLQHMKKKHGFD---IP-DQ-KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREA   65 (100)
T ss_dssp             ---------------------------------------------------------------SSEEBSSSS-EESSHHH
T ss_pred             Cccccccccccccc----------cccccccccccc---cc-cc-cccccccccccccccccCCCCCCCccCCCCcCHHH
Confidence            47788888877777          555665544321   11 11 222233334444442222368898 9988988889


Q ss_pred             HHHHHHHh
Q 044007          343 LMGHVALF  350 (378)
Q Consensus       343 L~~H~~~H  350 (378)
                      |..||+.+
T Consensus        66 l~~Hm~~~   73 (100)
T PF12756_consen   66 LQEHMRSK   73 (100)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHcCc
Confidence            99998764

>smart00355 ZnF_C2H2 zinc finger

Probab=96.61  E-value=0.0019  Score=36.94  Aligned_cols=25  Identities=44%  Similarity=0.809  Sum_probs=22.4

Q ss_pred             eecccccccccCHHHHHHHHHHhCC
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      |+|..|++.|.....|..|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            5799999999999999999997753

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.41  E-value=0.0023  Score=49.94  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=18.4

Q ss_pred             ccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCH
Q 044007          235 TAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVL  314 (378)
Q Consensus       235 ~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~  314 (378)
                      .|.+|+..|.....|..|+...|.-..+     ....+.....          +..+.+. .-...+.|..|+ +.|...
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~----------~~~~~~~-~~~~~~~C~~C~-~~f~s~   63 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNR----------LLNYLRK-KVKESFRCPYCN-KTFRSR   63 (100)
T ss_dssp             ----------------------------------------------------------------SSEEBSSSS--EESSH
T ss_pred             Cccccccccccccccccccccccccccc-----cccccccccc----------ccccccc-ccCCCCCCCccC-CCCcCH
Confidence            4788888888888888887777653322     1111111111          1112211 112368888888 888888


Q ss_pred             HHHHHHHh
Q 044007          315 SDLRTHEK  322 (378)
Q Consensus       315 ~~L~~H~~  322 (378)
                      ..|..|++
T Consensus        64 ~~l~~Hm~   71 (100)
T PF12756_consen   64 EALQEHMR   71 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            88888888

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.41  E-value=0.0039  Score=42.02  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=23.9

Q ss_pred             ccCCCCceecccccccccCHHHHHHHHHHhCCC
Q 044007          199 DLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       199 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      ....+.+..|++|+..+.+..+|++|+..+++.
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            445677899999999999999999999877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.21  E-value=0.003  Score=36.31  Aligned_cols=23  Identities=39%  Similarity=1.039  Sum_probs=21.0

Q ss_pred             eecccccccccCHHHHHHHHHHh
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAH  228 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H  228 (378)
                      |.|.+|++.|.+...|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999654

>smart00355 ZnF_C2H2 zinc finger

Probab=96.11  E-value=0.0048  Score=35.18  Aligned_cols=21  Identities=33%  Similarity=0.781  Sum_probs=10.9

Q ss_pred             ecc-CCCccCChHHHHHHHHHh
Q 044007          330 QCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       330 ~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      .|. |++.|.....|..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            455 555555555555555544

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.08  E-value=0.0059  Score=41.16  Aligned_cols=31  Identities=19%  Similarity=0.438  Sum_probs=12.1

Q ss_pred             CCCCeecc-CCCccCChHHHHHHHHHhcCCCC
Q 044007          325 GDLKWQCS-CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       325 g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      .+.|-.|+ |+..+.+..+|.+|+.++++.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            34445555 55555555555555544444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.00  E-value=0.0032  Score=54.06  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CCeeccCCCccCChHHHHHHHHHhcCCCCcccCcchhccCChh
Q 044007          327 LKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKG  369 (378)
Q Consensus       327 kp~~C~C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~  369 (378)
                      -+|.|.|++   ....+..|.++|+|+++|.|..|++.|....
T Consensus       118 ~~Y~C~C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCKCQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcCCCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            368888776   6667788888888888888888888876544

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.99  E-value=0.005  Score=60.71  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=108.7

Q ss_pred             CceecccccccccCHHHHHHHHH--HhCCC--CccccC--CCCcccCCCCccccchhhhhcCCCcccCCCCC--cccccc
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMR--AHGDE--YKTTAA--LTNPLKKNGSSMGNNNESAIKIARKYSCPQEG--CRWNKK  275 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~~--~~~~C~--~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~--k~F~~~  275 (378)
                      .++.|..|...|.....|..|.+  .|.++  +++.|.  .|++.|.....+..| ...|.+..++.|....  ..+...
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  366 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRH-ILLHTSISPAKEKLLNSSSKFSPL  366 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCC-cccccCCCccccccccCccccccc
Confidence            47899999999999999999999  79999  899998  799999888888887 5566666666665533  333222


Q ss_pred             ccCCCcccchhhcccccccccCCCceec--CCCCCccCCCHHHHHHHHh-ccCCCC--eecc-CCCccCChHHHHHHHHH
Q 044007          276 HAKFQPLKSMICAKNHYKRSHCPKMYVC--KRCNRKQFSVLSDLRTHEK-HCGDLK--WQCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       276 ~~~~k~~~c~~c~~~H~~~h~~~k~~~C--~~C~~k~F~~~~~L~~H~~-H~g~kp--~~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      .....+-     ....+......+.+.|  ..|. ..+.....+..|.. |....+  +.+. |.+.|.....+..|++.
T Consensus       367 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (467)
T COG5048         367 LNNEPPQ-----SLQQYKDLKNDKKSETLSNSCI-RNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKI  440 (467)
T ss_pred             cCCCCcc-----chhhccCccCCccccccccchh-hhhccccccccccccccccCCcCCCCCcchhhccCcccccccccc
Confidence            2211000     0111122223345555  2455 67777788888877 777765  4455 99999999999999999


Q ss_pred             hcCCCCcccCcchhccCChhhhh
Q 044007          350 FVGHTPAVNVNSTNMYGQKGAAT  372 (378)
Q Consensus       350 H~~~kpy~C~~C~k~F~~~~~L~  372 (378)
                      |....++.|..++. |.....+.
T Consensus       441 ~~~~~~~~~~~~~~-~~~~~~~~  462 (467)
T COG5048         441 HTNHAPLLCSILKS-FRRDLDLS  462 (467)
T ss_pred             cccCCceeeccccc-cchhhhhh
Confidence            98877766655443 33333333

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.97  E-value=0.0029  Score=62.40  Aligned_cols=136  Identities=17%  Similarity=0.159  Sum_probs=103.3

Q ss_pred             CccccCCCCcccCCCCccccchhh-hhcCC--CcccCC--CCCccccccccCCCcccchhhcccccccccCCCceecC--
Q 044007          232 YKTTAALTNPLKKNGSSMGNNNES-AIKIA--RKYSCP--QEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCK--  304 (378)
Q Consensus       232 ~~~~C~~c~~~~~~~~~l~~h~~~-~h~~~--k~~~C~--~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~--  304 (378)
                      .++.|..|...|.....+..|... .|.++  +++.|+  .|++.|.....          +..|+..|.+-+++.|.  
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  357 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDA----------LKRHILLHTSISPAKEKLL  357 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCcccccccc----------ccCCcccccCCCccccccc
Confidence            578899999999999999988665 88988  999999  79999998888          77788888887777774  


Q ss_pred             CCCCccCCCHHH----HHHHHh--ccCCCCeecc---CCCccCChHHHHHHHHHhcCCC--CcccCcchhccCChhhhhh
Q 044007          305 RCNRKQFSVLSD----LRTHEK--HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHT--PAVNVNSTNMYGQKGAATG  373 (378)
Q Consensus       305 ~C~~k~F~~~~~----L~~H~~--H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~k--py~C~~C~k~F~~~~~L~~  373 (378)
                      .|. +.+.....    ...+..  ....+.+.|.   |...+.+...+..|...|....  -+.+..|.+.|.....|..
T Consensus       358 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (467)
T COG5048         358 NSS-SKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIP  436 (467)
T ss_pred             cCc-cccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccc
Confidence            444 44444433    112222  3445667775   8888888888888988887665  5667889999999999998


Q ss_pred             hhcCC
Q 044007          374 TNAIT  378 (378)
Q Consensus       374 H~rv~  378 (378)
                      |++++
T Consensus       437 ~~~~~  441 (467)
T COG5048         437 HKKIH  441 (467)
T ss_pred             ccccc
Confidence            88764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.23  E-value=0.0044  Score=36.43  Aligned_cols=22  Identities=36%  Similarity=0.921  Sum_probs=20.1

Q ss_pred             eecccccccccCHHHHHHHHHH
Q 044007          206 HYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999999854

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.06  E-value=0.018  Score=32.72  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             eecccccccccCHHHHHHHHHHhC
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      |+|+.|+.... +..|..|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999999888 889999998864

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=94.93  E-value=0.0076  Score=65.83  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=13.6

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK  322 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~  322 (378)
                      ++|.|..|. ..+.....|.+|+.
T Consensus       517 ~p~~C~~C~-~stttng~Lsihlq  539 (1406)
T KOG1146|consen  517 KPYPCRACN-YSTTTNGNLSIHLQ  539 (1406)
T ss_pred             Ccccceeee-eeeecchHHHHHHH
Confidence            456666666 56666566666554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.86  E-value=0.012  Score=33.71  Aligned_cols=21  Identities=0%  Similarity=-0.137  Sum_probs=14.8

Q ss_pred             cccCcchhccCChhhhhhhhc
Q 044007          356 AVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |.|.+|++.|.+...|+.|.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            567777777777777777765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.62  E-value=0.02  Score=33.55  Aligned_cols=21  Identities=0%  Similarity=-0.086  Sum_probs=17.6

Q ss_pred             cccCcchhccCChhhhhhhhc
Q 044007          356 AVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            778888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.033  Score=57.67  Aligned_cols=28  Identities=39%  Similarity=0.634  Sum_probs=16.9

Q ss_pred             cccccccccCHHHHHHHHHH-hCCCCccccCCC
Q 044007          208 CQVCGKGFKRDANLRMHMRA-HGDEYKTTAALT  239 (378)
Q Consensus       208 C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~c  239 (378)
                      |..| -.|.....|+.||+. |..   +.|.+|
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC  146 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQHKL---HLCSLC  146 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhhhh---hccccc
Confidence            4444 444478899999954 543   445554

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.27  E-value=0.039  Score=31.26  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=10.4

Q ss_pred             eecc-CCCccCChHHHHHHHHHh
Q 044007          329 WQCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      |+|+ |+.... ...|..|+++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            4555 555554 55555555554

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=0.05  Score=56.39  Aligned_cols=145  Identities=14%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             eecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCcccch
Q 044007          206 HYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSM  285 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~  285 (378)
                      +.|.+|++.|.-.            ...-.|..| ..|.....|..|....|   +-+-|.+|-..-+--....+-|...
T Consensus       100 ~~C~~C~~~~~~~------------~~~~~~~~c-~~~~s~~~Lk~H~~~~H---~~~~c~lC~~~~kif~~e~k~Yt~~  163 (669)
T KOG2231|consen  100 HSCHICDRRFRAL------------YNKKECLHC-TEFKSVENLKNHMRDQH---KLHLCSLCLQNLKIFINERKLYTRA  163 (669)
T ss_pred             hhcCccccchhhh------------cccCCCccc-cchhHHHHHHHHHHHhh---hhhccccccccceeeeeeeehehHH
Confidence            7899999877531            123467788 77778888899988888   4556666654321111111111111


Q ss_pred             hhccccccc-ccCCC----ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C------CCccCChHHHHHHHHHhcC
Q 044007          286 ICAKNHYKR-SHCPK----MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C------GTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       286 ~c~~~H~~~-h~~~k----~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C------~k~F~~~~~L~~H~~~H~~  352 (378)
                      . +..|+.. -.+++    .-.|..|. ..|-....|.+|++ ++    |.|. |      +--|..-..|..|.|.++ 
T Consensus       164 e-l~~h~~~gd~d~~s~rGhp~C~~C~-~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H-  236 (669)
T KOG2231|consen  164 E-LNLHLMFGDPDDESCRGHPLCKFCH-ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-  236 (669)
T ss_pred             H-HHHHHhcCCCccccccCCccchhhh-hhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC-
Confidence            1 2333221 11111    24699999 89999999999998 43    4555 5      455677788888887654 


Q ss_pred             CCCcccC--cch-hcc----CChhhhhhhhc
Q 044007          353 HTPAVNV--NST-NMY----GQKGAATGTNA  376 (378)
Q Consensus       353 ~kpy~C~--~C~-k~F----~~~~~L~~H~r  376 (378)
                         |.|.  .|- +.|    .....|++|+|
T Consensus       237 ---flCE~~~C~~~~f~~~~~~ei~lk~~~~  264 (669)
T KOG2231|consen  237 ---FLCEEEFCRTKKFYVAFELEIELKAHNR  264 (669)
T ss_pred             ---ccccccccccceeeehhHHHHHHHhhcc
Confidence               7776  452 233    33456666654

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.10  E-value=0.03  Score=61.44  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             cCCCCCccCCCHHHHHHHHh--ccCCCCeecc-CCCccCChHHHHHHHHH-h------------------------cCCC
Q 044007          303 CKRCNRKQFSVLSDLRTHEK--HCGDLKWQCS-CGTTFSRKDKLMGHVAL-F------------------------VGHT  354 (378)
Q Consensus       303 C~~C~~k~F~~~~~L~~H~~--H~g~kp~~C~-C~k~F~~~~~L~~H~~~-H------------------------~~~k  354 (378)
                      |..|+ ..+.+...+-.|+.  |.-.+-|+|+ |+-.|+....|..|||. |                        .+-+
T Consensus       439 ~~~~e-~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  439 LTKAE-PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             ccchh-hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            55566 66777777777776  7777888888 88888888888888876 1                        1237


Q ss_pred             CcccCcchhccCChhhhhhhh
Q 044007          355 PAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~  375 (378)
                      ||.|..|...|+.+.+|-.|+
T Consensus       518 p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             cccceeeeeeeecchHHHHHH
Confidence            999999999999999999986

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.88  E-value=0.081  Score=30.49  Aligned_cols=19  Identities=0%  Similarity=-0.134  Sum_probs=10.2

Q ss_pred             ccCcchhccCChhhhhhhhc
Q 044007          357 VNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       357 ~C~~C~k~F~~~~~L~~H~r  376 (378)
                      .|+.||+.| ....|.+|.+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455555555 4555555543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.52  E-value=0.14  Score=31.67  Aligned_cols=23  Identities=22%  Similarity=0.777  Sum_probs=20.6

Q ss_pred             ceecccccccccCHHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999853

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.27  E-value=0.18  Score=29.01  Aligned_cols=21  Identities=29%  Similarity=0.706  Sum_probs=17.4

Q ss_pred             eecccccccccCHHHHHHHHHH
Q 044007          206 HYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       206 ~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      ..|+.||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4699999999 66789999754

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.88  E-value=0.17  Score=31.25  Aligned_cols=21  Identities=0%  Similarity=-0.216  Sum_probs=12.6

Q ss_pred             CcccCcchhccCChhhhhhhh
Q 044007          355 PAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~  375 (378)
                      +|.|++|++.|.....++.|.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~   23 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHL   23 (35)
T ss_pred             CeEccccCCccCCHHHHHHHH
Confidence            455666666666666665554

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR00622 ssl1 transcription factor ssl1

Probab=88.77  E-value=0.58  Score=37.48  Aligned_cols=93  Identities=13%  Similarity=0.155  Sum_probs=53.1

Q ss_pred             CcccCCCCCccccccccCCCcccchhhccccccccc--CCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCc
Q 044007          261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSH--CPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTT  336 (378)
Q Consensus       261 k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~--~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~  336 (378)
                      -|-.|+.||-.......+.+.|.-..-++.......  ....-.|--|. +.|.......  .. -.....|.|+ |...
T Consensus        14 LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~-~~f~~~~~~~--~~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQ-GPFPKPPVSP--FDELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcC-CCCCCccccc--ccccccccceeCCCCCCc
Confidence            577888888777666554443321111221111111  11122488888 8887643111  00 1234579999 9999


Q ss_pred             cCChHHHHHHHHHhcCCCCcccCcch
Q 044007          337 FSRKDKLMGHVALFVGHTPAVNVNST  362 (378)
Q Consensus       337 F~~~~~L~~H~~~H~~~kpy~C~~C~  362 (378)
                      |--.-+...|..+|.      |+-|.
T Consensus        91 FC~dCD~fiHe~Lh~------CPGC~  110 (112)
T TIGR00622        91 FCVDCDVFVHESLHC------CPGCI  110 (112)
T ss_pred             cccccchhhhhhccC------CcCCC
Confidence            988888888877774      66664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=87.87  E-value=0.17  Score=45.47  Aligned_cols=47  Identities=26%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             CceecCCCCCccCCCHHHHHHHHhccCCCCeecc-CCCccCChHHHHHH-HHHh
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS-CGTTFSRKDKLMGH-VALF  350 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~L~~H-~~~H  350 (378)
                      |+| |.+|+ +.|.....|.+|++   .|-|+|. |.|...+-..|..| |.+|
T Consensus        10 kpw-cwycn-refddekiliqhqk---akhfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   10 KPW-CWYCN-REFDDEKILIQHQK---AKHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             Cce-eeecc-cccchhhhhhhhhh---hccceeeeehhhhccCCCceeehhhhh
Confidence            443 77777 77777777777765   1227777 77666666666656 4555

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=86.81  E-value=0.49  Score=45.60  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             ceecccccccccCHHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      .|.|.-|...|.....-+.|+++
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKS   25 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKS   25 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhh
Confidence            48899999999999999999875

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=86.53  E-value=0.42  Score=43.02  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             ecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcC
Q 044007          207 YCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKI  259 (378)
Q Consensus       207 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~  259 (378)
                      .|.+|++.|....-|.+|++.    +-|+|.+|.+...+.-.|..|-+.+|+.
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhke   60 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHKE   60 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhhh
Confidence            599999999999999999865    3478899988888888888887777764

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=86.06  E-value=0.68  Score=44.65  Aligned_cols=49  Identities=10%  Similarity=0.110  Sum_probs=40.9

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCC-----------------------CCcccCcch---hccCChhhhhhhhc
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGH-----------------------TPAVNVNST---NMYGQKGAATGTNA  376 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~-----------------------kpy~C~~C~---k~F~~~~~L~~H~r  376 (378)
                      |--|- |++.|++...-..||..++|=                       .-|.|..|.   +.|.+-.+.++||+
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~  241 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR  241 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence            45688 999999999999999777652                       347799998   89999999999986

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=85.29  E-value=0.5  Score=29.12  Aligned_cols=10  Identities=20%  Similarity=0.032  Sum_probs=4.8

Q ss_pred             CCcccCcchh
Q 044007          354 TPAVNVNSTN  363 (378)
Q Consensus       354 kpy~C~~C~k  363 (378)
                      .|+.|++||.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            4455555543

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.06  E-value=1  Score=36.10  Aligned_cols=78  Identities=13%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             CCCceecCCCCCccCCCHHHHHHHHhcc------CCCCe-------ecc-CCCccCChHHHHHHHHHhcCCCCcccCcch
Q 044007          297 CPKMYVCKRCNRKQFSVLSDLRTHEKHC------GDLKW-------QCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNST  362 (378)
Q Consensus       297 ~~k~~~C~~C~~k~F~~~~~L~~H~~H~------g~kp~-------~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~  362 (378)
                      ++-|-.|+.|| -.......|.+--.|.      .+.+|       .|- |.+.|.......  ...-.....|.|+.|.
T Consensus        12 C~LP~~CpiCg-LtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~   88 (112)
T TIGR00622        12 CELPVECPICG-LTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP--FDELKDSHRYVCAVCK   88 (112)
T ss_pred             cCCCCcCCcCC-CEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc--ccccccccceeCCCCC
Confidence            34578899999 7777777776632221      22222       399 999998653211  0001234579999999


Q ss_pred             hccCChhhhhhhhcC
Q 044007          363 NMYGQKGAATGTNAI  377 (378)
Q Consensus       363 k~F~~~~~L~~H~rv  377 (378)
                      +-|=---..--|..+
T Consensus        89 ~~FC~dCD~fiHe~L  103 (112)
T TIGR00622        89 NVFCVDCDVFVHESL  103 (112)
T ss_pred             Cccccccchhhhhhc
Confidence            999766666555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=84.73  E-value=1.6  Score=41.53  Aligned_cols=130  Identities=15%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             ceeccc--ccccccCHHHHHHHHHHhCCCCccccCCCCc---ccCCC------CccccchhhhhcC---CCcccCCCCCc
Q 044007          205 THYCQV--CGKGFKRDANLRMHMRAHGDEYKTTAALTNP---LKKNG------SSMGNNNESAIKI---ARKYSCPQEGC  270 (378)
Q Consensus       205 ~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~---~~~~~------~~l~~h~~~~h~~---~k~~~C~~C~k  270 (378)
                      .|.|+.  |.........|+.|.+.-++.  +.|.+|-.   .|...      ..|..|...--.+   ...-.|..|..
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            467864  777777788999999876554  56666643   33332      2344443222111   12235888888


Q ss_pred             cccccccCCCcccchhhcccccccccCCCceecCCCCC---ccCCCHHHHHHHHhccCCCCeecc---CC----CccCCh
Q 044007          271 RWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNR---KQFSVLSDLRTHEKHCGDLKWQCS---CG----TTFSRK  340 (378)
Q Consensus       271 ~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~---k~F~~~~~L~~H~~H~g~kp~~C~---C~----k~F~~~  340 (378)
                      .|..--.          +..|++-.| ++-|.|+.-+.   .-|..-..|..|.+|   .-|.|.   |-    ..|...
T Consensus       229 ~FYdDDE----------L~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~k~~vf~~~  294 (493)
T COG5236         229 YFYDDDE----------LRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVGKCYVFPYH  294 (493)
T ss_pred             eecChHH----------HHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecCcEEEeccH
Confidence            8876666          444444322 12223322220   236666777777762   126674   52    467888


Q ss_pred             HHHHHHH-HHh
Q 044007          341 DKLMGHV-ALF  350 (378)
Q Consensus       341 ~~L~~H~-~~H  350 (378)
                      ..|..|+ +.|
T Consensus       295 ~el~~h~~~~h  305 (493)
T COG5236         295 TELLEHLTRFH  305 (493)
T ss_pred             HHHHHHHHHHh
Confidence            8888898 455

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=84.31  E-value=1.3  Score=42.11  Aligned_cols=48  Identities=8%  Similarity=0.050  Sum_probs=36.6

Q ss_pred             eecc-CCCccCChHHHHHHHH-HhcC--------------------------CCCcccCcchhccCChhhhhhhhc
Q 044007          329 WQCS-CGTTFSRKDKLMGHVA-LFVG--------------------------HTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~-~H~~--------------------------~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      ..|- |....-+...|..||. +|.=                          .+.-.|-.|.-.|.....|..|+.
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            4788 8888878888888885 4520                          123458889999999999999985

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.92  E-value=0.28  Score=43.15  Aligned_cols=77  Identities=22%  Similarity=0.455  Sum_probs=55.8

Q ss_pred             CcccCCCCC--ccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh--cc---------CCC
Q 044007          261 RKYSCPQEG--CRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK--HC---------GDL  327 (378)
Q Consensus       261 k~~~C~~C~--k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H~---------g~k  327 (378)
                      +.|.|++-|  ..|..--.          ...||..-|+   -.|..|. +.|.+...|..|+.  |-         |..
T Consensus        78 ~~~~cqvagc~~~~d~lD~----------~E~hY~~~h~---~sCs~C~-r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~d  143 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDD----------YEHHYHTLHG---NSCSFCK-RAFPTGHLLDAHILEWHDSLFQALVERGQD  143 (253)
T ss_pred             ccccccccchHHHHhhhhh----------HHHhhhhccc---chhHHHH-HhCCchhhhhHHHHHHHHHHHHHHHHcCcc
Confidence            567888744  45554444          2334443333   3799999 99999999999987  53         556


Q ss_pred             Ceecc---CCCccCChHHHHHHH-HHhc
Q 044007          328 KWQCS---CGTTFSRKDKLMGHV-ALFV  351 (378)
Q Consensus       328 p~~C~---C~k~F~~~~~L~~H~-~~H~  351 (378)
                      .|.|-   |+-.|++...-+.|+ +.|.
T Consensus       144 My~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  144 MYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            79994   999999999999997 7774

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.00  E-value=1.2  Score=35.58  Aligned_cols=15  Identities=27%  Similarity=0.687  Sum_probs=8.9

Q ss_pred             CceecCCCCCccCCCH
Q 044007          299 KMYVCKRCNRKQFSVL  314 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~  314 (378)
                      .|..|+.|| ..|...
T Consensus        25 ~PivCP~CG-~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCG-TEFPPE   39 (108)
T ss_pred             CCccCCCCC-CccCcc
Confidence            355666666 555554

The function of members of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		4e-07

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 32/159 (20%)
Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C  CGK F R  +L  H R H  E         P K              +  + +S  +
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGE--------KPYK------------CPECGKSFSDKK 63
Query: 268 EGCRWNKKHAKFQPLKSMICAKNH--------YKRSHC-PKMYVCKRCNRKQFSVLSDLR 318
           +  R  + H   +P K   C K+         ++R+H   K Y C  C  K FS L+ LR
Sbjct: 64  DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECG-KSFSQLAHLR 122
Query: 319 THEK-HCGDLKWQC-SCGTTFSRKDKLMGHVALFVGHTP 355
            H++ H G+  ++C  CG +FSR+D L  H     G  P
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	7e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	9e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	8e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	3e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	5e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 36/288 (12%), Positives = 71/288 (24%), Gaps = 114/288 (39%)

Query: 45  LKEKIHQLQSVVTVLVSQGQATESTSIAMANMGSLIQEIIITASSLMV-TCQQMSTLPAA 103
           L++ + +L+    VL+  G         +   G          + + +  C         
Sbjct: 140 LRQALLELRPAKNVLI-DG---------VLGSGK---------TWVALDVCLSYKVQCKM 180

Query: 104 S-----ISGNNNITANEIFQQQQ----HVGPNNQERSSGQQGYYFT-------------- 140
                 ++  N  +   + +  Q     + PN   RS                       
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 141 -------------------EAFD-TCYGDNNDYVTTHDHNRGMHNNVINSNDNTNITVAE 180
                               AF+ +C       +TT         + +++   T+I++  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQV---TDFLSAATTTHISLDH 293

Query: 181 NRESFSEIDCDIIELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTN 240
           +  + +  +          LL KY                     R    +       TN
Sbjct: 294 HSMTLTPDE-------VKSLLLKYL------------------DCRP--QDLPREVLTTN 326

Query: 241 PLKKNGSSMGNNNESAIK-IARKYSCPQEGCRWNK-KHAKFQPLKSMI 286
           P               +  IA   S       W+  KH     L ++I
Sbjct: 327 PR-------------RLSIIAE--SIRDGLATWDNWKHVNCDKLTTII 359

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 36/148 (24%), Positives = 53/148 (35%), Gaps = 47/148 (31%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C    + FK    L +HMR H  E                             + + C  
Sbjct: 42  CSRELRPFKAQYMLVVHMRRHTGE-----------------------------KPHKCTF 72

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSH-CPKMYVCK--RCNRKQFSVLSDLRTHEK-- 322
           EGC   K +++ + LK+      H  RSH   K Y+C+   C+ K FS  SD   H+   
Sbjct: 73  EGC--RKSYSRLENLKT------H-LRSHTGEKPYMCEHEGCS-KAFSNASDRAKHQNRT 122

Query: 323 HCGDLKWQCS---CGTTFSRKDKLMGHV 347
           H  +  + C    C   ++    L  HV
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHV 150

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 46/149 (30%)

Query: 208 CQVCGKGFKRDANLRMHM---RAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYS 264
              C + F     L  H+     HG+                              +++ 
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGER-----------------------------KEFV 36

Query: 265 CPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHC-PKMYVCKR--CNRKQFSVLSDLRTHE 321
           C   GC    +   F+    +     H  R H   K + C    C  K +S L +L+TH 
Sbjct: 37  CHWGGCSRELRP--FKAQYML---VVH-MRRHTGEKPHKCTFEGCR-KSYSRLENLKTHL 89

Query: 322 K-HCGDLKWQC---SCGTTFSRKDKLMGH 346
           + H G+  + C    C   FS       H
Sbjct: 90  RSHTGEKPYMCEHEGCSKAFSNASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 42/119 (35%)

Query: 211 CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGC 270
           C K + R  NL+ H+R+H  E                             + Y C  EGC
Sbjct: 75  CRKSYSRLENLKTHLRSHTGE-----------------------------KPYMCEHEGC 105

Query: 271 RWNKKHAKFQPLKSMICAKNHYKRSH-CPKMYVCKR--CNRKQFSVLSDLRTHEK-HCG 325
             +K  +             H  R+H   K YVCK   C  K+++  S LR H K   G
Sbjct: 106 --SKAFSNASDRAK------HQNRTHSNEKPYVCKLPGCT-KRYTDPSSLRKHVKTVHG 155

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 44/141 (31%)

Query: 211 CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGC 270
           C K + + ++L+MH R H  E                             + Y C  + C
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGE-----------------------------KPYQCDFKDC 44

Query: 271 RWNKKHAKFQPLKSMICAKNHYKRSH-CPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK 328
                  +F     +   K H +R H   K + CK C  ++FS    L+TH + H G+  
Sbjct: 45  ER-----RFSRSDQL---KRH-QRRHTGVKPFQCKTCQ-RKFSRSDHLKTHTRTHTGEKP 94

Query: 329 WQCS---CGTTFSRKDKLMGH 346
           + C    C   F+R D+L+ H
Sbjct: 95  FSCRWPSCQKKFARSDELVRH 115

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%)

Query: 261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHC-PKMYVC--KRCNRKQFSVLSDL 317
           R + C   GC   K + K   LK+      H  R+H   K Y C  + C+  +F+   +L
Sbjct: 14  RIHYCDYPGC--TKVYTKSSHLKA------H-LRTHTGEKPYKCTWEGCD-WRFARSDEL 63

Query: 318 RTHE-KHCGDLKWQCS-CGTTFSRKDKLMGHV 347
             H  KH G   +QC  C  +FSR D L  H+
Sbjct: 64  TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 41/116 (35%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C++C + F R  +L  H+R H  E                             + ++C  
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGE-----------------------------KPFACDI 36

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKH 323
             C   +K A+    K       H +        +  +   +  S    L      
Sbjct: 37  --C--GRKFARSDERKR------H-RDIQHILPILEDKVE-ELLSKNYHLENEVAR 80

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGH 346
           K + C+ C  + FS    L TH + H G+  + C  CG  F+R D+   H
Sbjct: 2   KPFQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 55/153 (35%)

Query: 204 YTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKY 263
                + C K F+ ++ +R H+  HG                               R +
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHTHGP------------------------------RVH 35

Query: 264 SCPQEGCRWNKKHAKFQPLKSMICA---KNHYKRSH-CPKMYVCKR--CNRKQFSVLSDL 317
            C + G             K+ + +   K H +  H   K + C    C  K+FS+  +L
Sbjct: 36  VCAECG-------------KAFVESSKLKRH-QLVHTGEKPFQCTFEGCG-KRFSLDFNL 80

Query: 318 RTHEK-HCGDLKWQCS---CGTTFSRKDKLMGH 346
           RTH + H GD  + C    C   F++   L  H
Sbjct: 81  RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 293 KRSHCP-KMYVCKRCNRKQFSVLSDLRTHE---KHCGDLKWQCS-CGTTFSRKDKLMGH 346
           + +      Y CK C+ + ++ +S+   H           + C  C   F+RKD +  H
Sbjct: 2   EFTKEGEHTYRCKVCS-RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK--WQCS-CGTTFSRKDKLMGHV 347
           K Y C  C+  +F+    ++ H      +    + C  C T  +RK  L  H+
Sbjct: 14  KPYECYICH-ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 208 CQVCGKGFKRDANLRMHMRAH-GDEYK 233
           C +C   F +   ++MH+     +   
Sbjct: 18  CYICHARFTQSGTMKMHILQKHTENVA 44

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 48/125 (38%)

Query: 206 HYCQV--CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKY 263
           + C    CGK FK+   L++H  +H  +                               Y
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQ-----------------------------LPY 32

Query: 264 SCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSH----CPKMYVCKRCNRKQFSVLSDLRT 319
            CP EGC       +F     +   K H ++ H    C K   C           +    
Sbjct: 33  ECPHEGCDK-----RFSLPSRL---KRH-EKVHAGYPCKKDDSCSFV----GKTWTLYLK 79

Query: 320 HEKHC 324
           H   C
Sbjct: 80  HVAEC 84

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAH 228
             C++CG   ++ A+L  H R H
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH 30

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 301 YVCKRCNRKQFSVLSDL----RTHEKHCGDLKWQCS-CGTTFSRKDKLMGH 346
             C+ C        + L    R H +    L++ C  CG  F + D +  H
Sbjct: 8   LQCEICG-FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 52/149 (34%)

Query: 209 QVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQE 268
           + C KGF    +L  H   H  E            KN                 ++C  +
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHTGE------------KN-----------------FTCDSD 78

Query: 269 GCRWNKKHAKFQPLKSMICAKNHYKRSH-----CPKMYVC--KRCNRKQFSVLSDLRTHE 321
           GC  + +      +K       H          C   YVC  + C  K F   + L+ H+
Sbjct: 79  GC--DLRFTTKANMKK------H-FNRFHNIKICV--YVCHFENC-GKAFKKHNQLKVHQ 126

Query: 322 K-HCGDLKWQCS---CGTTFSRKDKLMGH 346
             H   L ++C    C   FS   +L  H
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRH 155

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 19/81 (23%)

Query: 279 FQPLKS-MICAKNHYKRSHC-PKMYVCKRCNRKQFSVLSDLRTH---------EKHCGDL 327
            QP+K  + C     K           K C+ + FS + +L TH         E++    
Sbjct: 7   GQPIKQELSC-----KWIDEAQLSRPKKSCD-RTFSTMHELVTHVTMEHVGGPEQNNHVC 60

Query: 328 KWQ-CS-CGTTFSRKDKLMGH 346
            W+ C   G +F  K KL+ H
Sbjct: 61  YWEECPREGKSFKAKYKLVNH 81

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 43/123 (34%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ 267
           C   GK FK    L  H+R H  E                             + + CP 
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHTGE-----------------------------KPFPCPF 95

Query: 268 EGCRWNKKHAKFQPLKSMICAKNHYKRSHC-PKMYVCKR--CNRKQFSVLSDLRTHEK-H 323
            GC   K  A+ + LK       H KR+H   K + C+   C+ ++F+  SD + H   H
Sbjct: 96  PGC--GKIFARSENLKI------H-KRTHTGEKPFKCEFEGCD-RRFANSSDRKKHMHVH 145

Query: 324 CGD 326
             D
Sbjct: 146 TSD 148

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C++CG  F+    L+ H+R H
Sbjct: 14  CEICGTRFRHLQTLKSHLRIH 34

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGH 346
           K + C+ C  + FS    L TH + H G+  + C  CG  F+R D+   H
Sbjct: 33  KPFQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGH 346
           + +VC+ C  + F+    L+ H + H  +  + C  C   F+R+D L+ H
Sbjct: 1   RSFVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 68/147 (46%)

Query: 203 KYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARK 262
            +T     CGK + + ++L+ H+R H  E                             + 
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGE-----------------------------KP 35

Query: 263 YSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHE- 321
           Y C  +GC W                                     +F+   +L  H  
Sbjct: 36  YHCDWDGCGW-------------------------------------KFARSDELTRHYR 58

Query: 322 KHCGDLKWQCS-CGTTFSRKDKLMGHV 347
           KH G   +QC  C   FSR D L  H+
Sbjct: 59  KHTGHRPFQCQKCDRAFSRSDHLALHM 85

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAHGDE 231
             C++CGK F+   +L  H  +H  E
Sbjct: 13  VACEICGKIFRDVYHLNRHKLSHSGE 38

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT 354
               C  C  K+F     L+ H + H G+  ++C  CG  + RK+ L+ H A    + 
Sbjct: 6   SGVECPTC-HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C+ CG  F + A+LR H+  H
Sbjct: 14  CETCGARFVQVAHLRAHVLIH 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.76
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.74
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.74
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.71
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.71
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.68
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.63
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.63
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.62
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.62
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.61
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.57
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.53
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.52
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.49
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.49
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.47
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.46
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.46
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.45
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.44
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.44
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.43
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.41
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.41
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.39
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.39
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.39
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.39
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.38
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.36
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.36
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.3
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.28
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.25
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.24
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.23
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.22
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.22
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.16
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.14
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.13
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.12
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.11
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.11
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.1
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.1
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.07
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.06
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.06
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.06
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.01
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.0
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.0
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.98
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.97
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.96
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.95
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.95
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.95
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.94
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.92
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.92
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.92
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.9
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.9
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.88
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.88
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.87
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.87
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.86
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.86
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.85
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.82
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.79
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.79
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.68
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.66
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.66
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.58
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.57
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.55
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.47
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.41
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.39
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.37
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.34
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.33
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.3
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.28
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.28
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.26
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.24
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.19
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.19
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.17
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.17
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.14
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.13
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.11
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.1
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.33
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.32
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.04
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.04
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.04
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.03
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.03
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.28
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.01
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.99
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.98
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.92
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.92
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.9
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.89
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.87
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.87
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.86
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.86
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.07
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.05
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.0
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.73
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.54
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.41
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.3
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.63
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.41
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.97
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.86
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.39
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.19
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.37
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	88.77
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.44
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.12

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.2e-35  Score=260.77  Aligned_cols=168  Identities=24%  Similarity=0.474  Sum_probs=144.5

Q ss_pred             ccCCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccC
Q 044007          199 DLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAK  278 (378)
Q Consensus       199 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~  278 (378)
                      ...++++|.|++|++.|.+...|..|++.|.++++|.|..|++.|.....|..| ++.|.++++|.|+.|++.|..... 
T Consensus        15 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~-   92 (190)
T 2i13_A           15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRAN-   92 (190)
T ss_dssp             ----------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHH-HHHHHCCCCEECTTTCCEESCHHH-
T ss_pred             hcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHH-HHhcCCCCCccCcccCCccCCHHH-
Confidence            345678999999999999999999999999999999999999999999999999 567889999999999999999988 


Q ss_pred             CCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCc
Q 044007          279 FQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       279 ~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                               +..|++.|+++++|.|+.|+ +.|.....|..|++ |.+++||.|+ |++.|.+...|..|+++|++++||
T Consensus        93 ---------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A           93 ---------LRAHQRTHTGEKPYACPECG-KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             ---------HHHHHHHHHTCCCEECTTTC-CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             ---------HHHHHHhcCCCCCCcCCCCC-CccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence                     89999999999999999999 99999999999999 9999999999 999999999999999999999999


Q ss_pred             ccCcchhccCChhhhhhhhcCC
Q 044007          357 VNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       357 ~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      .|++|++.|.++..|++|++++
T Consensus       163 ~C~~C~~~f~~~~~L~~H~~~H  184 (190)
T 2i13_A          163 KCPECGKSFSRRDALNVHQRTH  184 (190)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTC
T ss_pred             ECCCCCCccCCHHHHHHHHHhc
Confidence            9999999999999999999975

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=6.1e-31  Score=232.17  Aligned_cols=164  Identities=23%  Similarity=0.460  Sum_probs=134.1

Q ss_pred             CCCCcCCcchhhH-------HHhhhccCCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccch
Q 044007          181 NRESFSEIDCDII-------ELVAGDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNN  253 (378)
Q Consensus       181 ~~~~~~~~~c~~~-------~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~  253 (378)
                      ....|.|..|+..       ..+.....++++|.|++|++.|.+...|..|++.|.++++|.|..|++.|.....|..| 
T Consensus        18 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-   96 (190)
T 2i13_A           18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-   96 (190)
T ss_dssp             -------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-
T ss_pred             CCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHH-
Confidence            3455677777653       33444456778999999999999999999999999999999999999999999999998 


Q ss_pred             hhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          254 ESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       254 ~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      ++.|.++++|.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus        97 ~~~h~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~~~H~~~~~~~C~  165 (190)
T 2i13_A           97 QRTHTGEKPYACPECGKSFSQLAH----------LRAHQRTHTGEKPYKCPECG-KSFSREDNLHTHQRTHTGEKPYKCP  165 (190)
T ss_dssp             HHHHHTCCCEECTTTCCEESSHHH----------HHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             HHhcCCCCCCcCCCCCCccCCHHH----------HHHHHHHhCCCCCeECCCCC-cccCCHHHHHHHHHhcCCCCCeECC
Confidence            567889999999999999999988          89999999999999999999 99999999999999 9999999999


Q ss_pred             -CCCccCChHHHHHHHHHhcCCCCc
Q 044007          333 -CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       333 -C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                       |++.|.+...|..|+++|+|++||
T Consensus       166 ~C~~~f~~~~~L~~H~~~H~~~k~~  190 (190)
T 2i13_A          166 ECGKSFSRRDALNVHQRTHTGKKTS  190 (190)
T ss_dssp             TTCCEESSHHHHHHHHTTC------
T ss_pred             CCCCccCCHHHHHHHHHhcCCCCCC
Confidence             999999999999999999999997

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.96  E-value=2.7e-30  Score=228.05  Aligned_cols=164  Identities=18%  Similarity=0.294  Sum_probs=151.1

Q ss_pred             cCCCCceec--ccccccccCHHHHHHHHHHhCCCCcccc--CCCCcccCCCCccccchhhhhcCCCcccCC--CCCcccc
Q 044007          200 LLAKYTHYC--QVCGKGFKRDANLRMHMRAHGDEYKTTA--ALTNPLKKNGSSMGNNNESAIKIARKYSCP--QEGCRWN  273 (378)
Q Consensus       200 ~~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C--~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~--~C~k~F~  273 (378)
                      ....++|.|  +.|++.|.+...|..|++.|.++++|.|  ..|++.|.....|..| ++.|.++++|.|+  .|++.|.
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHH-HTTTTTCCCEECCSSSCCCEES
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHH-HHHccCCCceeCCCCCCCCccC
Confidence            345688999  7899999999999999999999999999  8999999999999999 5689999999999  8999999


Q ss_pred             ccccCCCcccchhhccccc-ccc-cCCCceec--CCCCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHH
Q 044007          274 KKHAKFQPLKSMICAKNHY-KRS-HCPKMYVC--KRCNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMG  345 (378)
Q Consensus       274 ~~~~~~k~~~c~~c~~~H~-~~h-~~~k~~~C--~~C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~  345 (378)
                      +...          +..|+ +.| .++++|.|  +.|+ +.|.....|..|++ |++++||.|  . |++.|.+...|..
T Consensus        86 ~~~~----------l~~H~~~~h~~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~  154 (190)
T 1tf6_A           86 TKAN----------MKKHFNRFHNIKICVYVCHFENCG-KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR  154 (190)
T ss_dssp             CHHH----------HHHHHHTTSSTTTSCCEECSSSSC-EECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHH
T ss_pred             CHHH----------HHHHHHHhcCCCcceeeCCCCCCc-cccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHH
Confidence            9998          88898 455 35789999  9999 99999999999999 999999999  6 9999999999999


Q ss_pred             HHHHhcCCCCcccCc---chhccCChhhhhhhhcCC
Q 044007          346 HVALFVGHTPAVNVN---STNMYGQKGAATGTNAIT  378 (378)
Q Consensus       346 H~~~H~~~kpy~C~~---C~k~F~~~~~L~~H~rv~  378 (378)
                      |+++|+|   |.|..   |++.|.+...|.+|++++
T Consensus       155 H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h  187 (190)
T 1tf6_A          155 HEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC  187 (190)
T ss_dssp             HHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTC
T ss_pred             HHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhh
Confidence            9999998   99999   999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=1.3e-27  Score=203.37  Aligned_cols=141  Identities=21%  Similarity=0.363  Sum_probs=126.8

Q ss_pred             CCceecccccccccCHHHHHHHHH---HhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMR---AHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKF  279 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~---~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~  279 (378)
                      +.+|.|+.|++.|.+...|..|++   .|.++++|.|.+|+                        |+.|++.|.....  
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~------------------------C~~c~~~f~~~~~--   54 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------------CSRELRPFKAQYM--   54 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT------------------------CTTTTCCCSSHHH--
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC------------------------ccchhhhhhhHHH--
Confidence            457899999999999999999998   56677555555442                        5667789998888  


Q ss_pred             CcccchhhcccccccccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeecc---CCCccCChHHHHHHH-HHhcC
Q 044007          280 QPLKSMICAKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQCS---CGTTFSRKDKLMGHV-ALFVG  352 (378)
Q Consensus       280 k~~~c~~c~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C~---C~k~F~~~~~L~~H~-~~H~~  352 (378)
                              +..|++.|+++++|.|++  |+ +.|.....|..|++ |.+++||.|+   |++.|.+...|..|+ ++|++
T Consensus        55 --------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~  125 (155)
T 2gli_A           55 --------LVVHMRRHTGEKPHKCTFEGCR-KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN  125 (155)
T ss_dssp             --------HHHHTHHHHCCCCCCCCSTTCC-CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             --------HHHHHHhcCCCCCccCCCCCCC-CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence                    899999999999999985  99 99999999999999 9999999997   999999999999999 89999


Q ss_pred             CCCcccCc--chhccCChhhhhhhhcCC
Q 044007          353 HTPAVNVN--STNMYGQKGAATGTNAIT  378 (378)
Q Consensus       353 ~kpy~C~~--C~k~F~~~~~L~~H~rv~  378 (378)
                      ++||.|++  |++.|.++..|.+|++++
T Consensus       126 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h  153 (155)
T 2gli_A          126 EKPYVCKLPGCTKRYTDPSSLRKHVKTV  153 (155)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHHHS
T ss_pred             CCCeeCCCCCCccccCCHHHHHHHHHhh
Confidence            99999998  999999999999999853

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=3.2e-25  Score=195.42  Aligned_cols=138  Identities=12%  Similarity=0.217  Sum_probs=128.1

Q ss_pred             CCCCcccc--CCCCcccCCCCccccchhhhhcCCCcccC--CCCCccccccccCCCcccchhhcccccccccCCCceecC
Q 044007          229 GDEYKTTA--ALTNPLKKNGSSMGNNNESAIKIARKYSC--PQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCK  304 (378)
Q Consensus       229 ~~~~~~~C--~~c~~~~~~~~~l~~h~~~~h~~~k~~~C--~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~  304 (378)
                      ...++|.|  ..|++.|.....|..| ++.|.++++|.|  +.|++.|.....          +..|++.|+++++|.|+
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~   76 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHH----------LTRHSLTHTGEKNFTCD   76 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHH-HHHHHCCCSSCCSSTTCCCCCSSHHH----------HHHHHTTTTTCCCEECC
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHH-HHhcCCCCCccCCCCCCChhhCCHHH----------HHHHHHHccCCCceeCC
Confidence            34578999  7899999999999999 567999999999  889999999998          99999999999999999


Q ss_pred             --CCCCccCCCHHHHHHHH-h-c-cCCCCeec--c-CCCccCChHHHHHHHHHhcCCCCcccCc--chhccCChhhhhhh
Q 044007          305 --RCNRKQFSVLSDLRTHE-K-H-CGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHTPAVNVN--STNMYGQKGAATGT  374 (378)
Q Consensus       305 --~C~~k~F~~~~~L~~H~-~-H-~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~--C~k~F~~~~~L~~H  374 (378)
                        .|+ +.|.....|..|+ + | .++++|.|  + |++.|.+...|..|+++|++++||.|++  |++.|.++..|++|
T Consensus        77 ~~~C~-~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H  155 (190)
T 1tf6_A           77 SDGCD-LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH  155 (190)
T ss_dssp             SSSCC-CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHH
T ss_pred             CCCCC-CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHH
Confidence              899 9999999999999 5 7 57899999  9 9999999999999999999999999988  99999999999999


Q ss_pred             hcCC
Q 044007          375 NAIT  378 (378)
Q Consensus       375 ~rv~  378 (378)
                      ++++
T Consensus       156 ~~~H  159 (190)
T 1tf6_A          156 EKVH  159 (190)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            9975

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=3.8e-25  Score=184.36  Aligned_cols=115  Identities=18%  Similarity=0.287  Sum_probs=105.7

Q ss_pred             cccchhhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          249 MGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       249 l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      ...|++.+|.|+++|.|++|++.|.....          |+.|+++|.+++||.|+.|+ +.|.....|..|++ |+|++
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~----------L~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTS----------LRRHFNIHSWEKKYPCRYCE-KVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHH----------HHHHHHHHHCCSCEECSSSS-CEESSHHHHHHHHHHHHTCC
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHH----------HHHHHHHcCCCCCeeCCccC-eecccccchhhhccccCCCc
Confidence            45677888999999999999999999999          99999999999999999999 99999999999999 99999


Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCC------CcccCcchhccCChhhhhhh
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHT------PAVNVNSTNMYGQKGAATGT  374 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~k------py~C~~C~k~F~~~~~L~~H  374 (378)
                      ||.|+ |+++|.++..|..|+++|++++      +|+|.+|++.|..+.....+
T Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~h~~e  131 (133)
T 2lt7_A           78 RYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYAYLSD  131 (133)
T ss_dssp             CEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCHHHHC
T ss_pred             cccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccccccc
Confidence            99999 9999999999999999998764      58999999999887665544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=1.8e-24  Score=175.61  Aligned_cols=110  Identities=24%  Similarity=0.469  Sum_probs=105.1

Q ss_pred             cCCCcccCCC--CCccccccccCCCcccchhhcccccccccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          258 KIARKYSCPQ--EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       258 ~~~k~~~C~~--C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +++++|.|++  |++.|.....          +..|++.|+++++|.|+  .|+ +.|.....|..|++ |.++++|.|+
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~   70 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSH----------LQMHSRKHTGEKPYQCDFKDCE-RRFSRSDQLKRHQRRHTGVKPFQCK   70 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHH----------HHHHHHHHHTTCCEECCSTTCC-CEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCeeeeCCCCCCcchhCCHHH----------HHHHHHhhCCCCCccCCCCCCc-CccCCHHHHHHHHHHcCCCCCccCC
Confidence            3568999997  9999999988          89999999999999999  799 99999999999999 9999999999


Q ss_pred             -CCCccCChHHHHHHHHHhcCCCCccc--CcchhccCChhhhhhhhcCC
Q 044007          333 -CGTTFSRKDKLMGHVALFVGHTPAVN--VNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       333 -C~k~F~~~~~L~~H~~~H~~~kpy~C--~~C~k~F~~~~~L~~H~rv~  378 (378)
                       |++.|.+...|..|+++|++++||.|  +.|++.|.++..|.+|+++|
T Consensus        71 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence             99999999999999999999999999  89999999999999999986

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=9.4e-24  Score=179.74  Aligned_cols=126  Identities=21%  Similarity=0.414  Sum_probs=111.8

Q ss_pred             CCCceecccccccccCHHHHHHHHHH-hCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCC
Q 044007          202 AKYTHYCQVCGKGFKRDANLRMHMRA-HGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQ  280 (378)
Q Consensus       202 ~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k  280 (378)
                      +...|.|.+|++.|.+...|..|++. |.++.+.....|                     ..|.|++|++.|.....   
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~---------------------~~~~C~~C~~~f~~~~~---   77 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC---------------------YWEECPREGKSFKAKYK---   77 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCC---------------------CBTTCTTSSCCCSSHHH---
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccc---------------------cccCCCCcccccCCHHH---
Confidence            46789999999999999999999997 766532221111                     45899999999999888   


Q ss_pred             cccchhhcccccccccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeecc---CCCccCChHHHHHHHHHhcCCC
Q 044007          281 PLKSMICAKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       281 ~~~c~~c~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                             +..|++.|+++++|.|+.  |+ +.|.....|..|++ |++++||.|.   |++.|.+...|..|+++|++++
T Consensus        78 -------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k  149 (155)
T 2rpc_A           78 -------LVNHIRVHTGEKPFPCPFPGCG-KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK  149 (155)
T ss_dssp             -------HHHHTHHHHCCCSEECSCTTTC-CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC
T ss_pred             -------HHHHHHhcCCCCcccCCcCCCC-CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence                   889999999999999998  99 99999999999999 9999999997   9999999999999999999999


Q ss_pred             CcccC
Q 044007          355 PAVNV  359 (378)
Q Consensus       355 py~C~  359 (378)
                      ||.|.
T Consensus       150 ~~~c~  154 (155)
T 2rpc_A          150 SGPSS  154 (155)
T ss_dssp             CSCSC
T ss_pred             CCCCC
Confidence            99996

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=9.6e-24  Score=172.35  Aligned_cols=108  Identities=22%  Similarity=0.352  Sum_probs=102.1

Q ss_pred             cCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-c---cCCCCeecc-
Q 044007          258 KIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-H---CGDLKWQCS-  332 (378)
Q Consensus       258 ~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H---~g~kp~~C~-  332 (378)
                      ++.++|.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |   .++++|.|+ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~~~~~~~~~~~~C~~   71 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYY----------LKVHNRKHTGEKPFECPKCG-KCYFRKENLLEHEARNCMNRSEQVFTCSV   71 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHH----------HHHHHHHHSSCCSCBCTTTC-CBCSSHHHHHHHHHHCCCCSCCCCEECSS
T ss_pred             CCCCCCCCCCCCCcCCCHHH----------HHHHHHhCCCCCCeECCCCC-chhcCHHHHHHHHhhhhcCCCCCCeECCC
Confidence            35589999999999999988          89999999999999999999 99999999999998 4   688999999 


Q ss_pred             CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhc
Q 044007          333 CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       333 C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |++.|.+...|..|+++|++++||.|++|++.|.++..|.+|++
T Consensus        72 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           72 CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             SCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=1.9e-23  Score=170.99  Aligned_cols=115  Identities=27%  Similarity=0.503  Sum_probs=95.7

Q ss_pred             CCCceecc--cccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCC
Q 044007          202 AKYTHYCQ--VCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKF  279 (378)
Q Consensus       202 ~~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~  279 (378)
                      .+++|.|+  .|++.|.+...|..|++.| ++                             ++|.|++|++.|.....  
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~-----------------------------~~~~C~~C~~~f~~~~~--   49 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GP-----------------------------RVHVCAECGKAFVESSK--   49 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SC-----------------------------CCEECTTTCCEESSHHH--
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CC-----------------------------CCeECCCCCchhCCHHH--
Confidence            35678998  8999999999999999888 55                             78899999999988888  


Q ss_pred             CcccchhhcccccccccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHhcCC
Q 044007          280 QPLKSMICAKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       280 k~~~c~~c~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                              +..|++.|+++++|.|..  |+ +.|.....|..|++ |.+++||.|  . |++.|.+...|..|+++|+++
T Consensus        50 --------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           50 --------LKRHQLVHTGEKPFQCTFEGCG-KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             --------HHHHGGGTSCCCCEECCSTTCC-CEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             --------HHHHHHHcCCCCCeeCCCCCCc-CccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence                    888888999999999975  99 99999999999999 999999999  6 999999999999999999998


Q ss_pred             CCcc
Q 044007          354 TPAV  357 (378)
Q Consensus       354 kpy~  357 (378)
                      ++|.
T Consensus       121 k~~q  124 (124)
T 1ubd_C          121 KNNQ  124 (124)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8863

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=4.6e-23  Score=168.28  Aligned_cols=114  Identities=28%  Similarity=0.600  Sum_probs=102.8

Q ss_pred             CCCCceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCC
Q 044007          201 LAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQ  280 (378)
Q Consensus       201 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k  280 (378)
                      .++++|+|++|++.|.+...|..|++.|.++                             ++|.|++|++.|.....   
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~~~C~~C~~~f~~~~~---   50 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGE-----------------------------KPFECPKCGKCYFRKEN---   50 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSC-----------------------------CSCBCTTTCCBCSSHHH---
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCC-----------------------------CCeECCCCCchhcCHHH---
Confidence            3567899999999999999999999999887                             78888889988888887   


Q ss_pred             cccchhhccccccc---ccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHH-HhcCCC
Q 044007          281 PLKSMICAKNHYKR---SHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVA-LFVGHT  354 (378)
Q Consensus       281 ~~~c~~c~~~H~~~---h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~k  354 (378)
                             +..|++.   +.++++|.|+.|+ +.|.....|..|++ |.+++||.|+ |++.|.+...|..|++ +|.++.
T Consensus        51 -------l~~H~~~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           51 -------LLEHEARNCMNRSEQVFTCSVCQ-ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             -------HHHHHHHCCCCSCCCCEECSSSC-CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             -------HHHHHhhhhcCCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence                   7777764   5678999999999 99999999999999 9999999999 9999999999999996 687754

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=4.7e-23  Score=167.10  Aligned_cols=109  Identities=31%  Similarity=0.675  Sum_probs=103.3

Q ss_pred             CCCceeccc--ccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCC--CCCcccccccc
Q 044007          202 AKYTHYCQV--CGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCP--QEGCRWNKKHA  277 (378)
Q Consensus       202 ~~~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~--~C~k~F~~~~~  277 (378)
                      ++++|.|.+  |++.|.+...|..|++.|.++                             ++|.|+  .|++.|.....
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~~~C~~~~C~~~f~~~~~   53 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE-----------------------------KPYQCDFKDCERRFSRSDQ   53 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTT-----------------------------CCEECCSTTCCCEESSHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCC-----------------------------CCccCCCCCCcCccCCHHH
Confidence            567899997  999999999999999999877                             889998  79999999888


Q ss_pred             CCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHh
Q 044007          278 KFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       278 ~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H  350 (378)
                                +..|++.|+++++|.|+.|+ +.|.....|..|++ |++++||.|  + |++.|.+...|..|+++|
T Consensus        54 ----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           54 ----------LKRHQRRHTGVKPFQCKTCQ-RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             ----------HHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             ----------HHHHHHHcCCCCCccCCccC-chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence                      89999999999999999999 99999999999999 999999999  8 999999999999999987

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=1.6e-22  Score=165.42  Aligned_cols=107  Identities=27%  Similarity=0.511  Sum_probs=99.4

Q ss_pred             CCcccCC--CCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec--c-C
Q 044007          260 ARKYSCP--QEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC--S-C  333 (378)
Q Consensus       260 ~k~~~C~--~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C  333 (378)
                      .++|.|+  .|++.|.....          +..|++.| ++++|.|+.|+ +.|.....|..|++ |.+++||.|  + |
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~----------l~~H~~~h-~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C   70 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSA----------MRKHLHTH-GPRVHVCAECG-KAFVESSKLKRHQLVHTGEKPFQCTFEGC   70 (124)
T ss_dssp             --CEECCSTTCCCEESSHHH----------HHHHHGGG-SCCCEECTTTC-CEESSHHHHHHHGGGTSCCCCEECCSTTC
T ss_pred             CCcccCCCCCCcCccCCHHH----------HHHHHHHc-CCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            3789999  89999999988          88898887 88999999999 99999999999999 999999999  4 9


Q ss_pred             CCccCChHHHHHHHHHhcCCCCcccC--cchhccCChhhhhhhhcCC
Q 044007          334 GTTFSRKDKLMGHVALFVGHTPAVNV--NSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~~H~~~kpy~C~--~C~k~F~~~~~L~~H~rv~  378 (378)
                      ++.|.+...|..|+++|++++||.|+  .|++.|.++..|.+|++++
T Consensus        71 ~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  117 (124)
T 1ubd_C           71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH  117 (124)
T ss_dssp             CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHH
Confidence            99999999999999999999999996  5999999999999999853

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=2.1e-22  Score=167.68  Aligned_cols=89  Identities=16%  Similarity=0.258  Sum_probs=84.4

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhcc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMY  365 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F  365 (378)
                      ...|..+|.|+++|+|++|+ +.|...+.|..|++ |+|++||.|+ |+++|.+...|..|+++|+|++||.|++||+.|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F   88 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCK-RSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF   88 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTC-CEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred             HhhceeecCCCcCeECCCCC-CCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence            34456788899999999999 99999999999999 9999999999 999999999999999999999999999999999


Q ss_pred             CChhhhhhhhcC
Q 044007          366 GQKGAATGTNAI  377 (378)
Q Consensus       366 ~~~~~L~~H~rv  377 (378)
                      .++..|.+|+++
T Consensus        89 ~~~~~L~~H~~~  100 (133)
T 2lt7_A           89 INYQFMSSHIKS  100 (133)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHhHH
Confidence            999999999874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=2.8e-21  Score=164.33  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=100.1

Q ss_pred             CCCcccCCCCCccccccccCCCcccchhhccccccc-ccCCCc--------eecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          259 IARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKR-SHCPKM--------YVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       259 ~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~-h~~~k~--------~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      ...+|.|+.|++.|.....          |..|++. |.++++        |.|+.|+ +.|.....|..|++ |.++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~----------L~~H~~~~H~~~~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~   90 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHE----------LVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNHIRVHTGEKP   90 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHH----------HHHHHHTTTSCCTTCSSCCCCBTTCTTSS-CCCSSHHHHHHHTHHHHCCCS
T ss_pred             hhcccccccCCcccCCHHH----------HHHHHHhhcCCCcccCCccccccCCCCcc-cccCCHHHHHHHHHhcCCCCc
Confidence            4578999999999999988          8888887 544443        8999999 99999999999999 999999


Q ss_pred             eecc---CCCccCChHHHHHHHHHhcCCCCcccCc--chhccCChhhhhhhhcCC
Q 044007          329 WQCS---CGTTFSRKDKLMGHVALFVGHTPAVNVN--STNMYGQKGAATGTNAIT  378 (378)
Q Consensus       329 ~~C~---C~k~F~~~~~L~~H~~~H~~~kpy~C~~--C~k~F~~~~~L~~H~rv~  378 (378)
                      |.|.   |++.|.+...|..|+++|++++||.|.+  |++.|.++..|.+|+|+|
T Consensus        91 ~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H  145 (155)
T 2rpc_A           91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH  145 (155)
T ss_dssp             EECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTT
T ss_pred             ccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHh
Confidence            9995   9999999999999999999999999997  999999999999999975

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=2.4e-20  Score=158.35  Aligned_cols=114  Identities=25%  Similarity=0.448  Sum_probs=101.3

Q ss_pred             ccCCCCceecccc-----cccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCC--CCcc
Q 044007          199 DLLAKYTHYCQVC-----GKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ--EGCR  271 (378)
Q Consensus       199 ~~~~~~~~~C~~C-----~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~--C~k~  271 (378)
                      ...++++|.|++|     ++.|.+...|..|++.|.++                             ++|.|+.  |++.
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~-----------------------------~~~~C~~~~C~~~   78 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE-----------------------------KPHKCTFEGCRKS   78 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC-----------------------------CCCCCCSTTCCCC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCC-----------------------------CCccCCCCCCCCc
Confidence            4566788988753     49999999999999999887                             7888975  9999


Q ss_pred             ccccccCCCcccchhhcccccccccCCCceecCC--CCCccCCCHHHHHHHH-h-ccCCCCeec--c-CCCccCChHHHH
Q 044007          272 WNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHE-K-HCGDLKWQC--S-CGTTFSRKDKLM  344 (378)
Q Consensus       272 F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~-~-H~g~kp~~C--~-C~k~F~~~~~L~  344 (378)
                      |.....          +..|++.|+++++|.|+.  |+ +.|.....|..|+ + |.+++||.|  + |++.|.+...|.
T Consensus        79 f~~~~~----------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~  147 (155)
T 2gli_A           79 YSRLEN----------LKTHLRSHTGEKPYMCEHEGCS-KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR  147 (155)
T ss_dssp             CSSHHH----------HHHHHHHTTTCCCEECCSTTCC-CEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHH
T ss_pred             ccCHHH----------HHHHHHHcCCCCCeeCCCCCCC-CccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHH
Confidence            988888          888999999999999998  99 9999999999998 6 999999999  4 999999999999


Q ss_pred             HHHHHhcC
Q 044007          345 GHVALFVG  352 (378)
Q Consensus       345 ~H~~~H~~  352 (378)
                      .|+++|+|
T Consensus       148 ~H~~~hhg  155 (155)
T 2gli_A          148 KHVKTVHG  155 (155)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHhhcC
Confidence            99999875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2e-19  Score=140.11  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             cCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhh
Q 044007          296 HCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATG  373 (378)
Q Consensus       296 ~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~  373 (378)
                      .++++|.|+.|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|++++||.|.+|++.|.....|.+
T Consensus         4 ~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            4 GSSGPHKCEVCG-KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCCCBTTTT-BCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCCcCeECCCCC-CccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHH
Confidence            445677777777 77777777777777 7777777777 77777777777777777777777777777777777777777


Q ss_pred             hhcCC
Q 044007          374 TNAIT  378 (378)
Q Consensus       374 H~rv~  378 (378)
                      |++++
T Consensus        83 H~~~h   87 (96)
T 2dmd_A           83 HLRSH   87 (96)
T ss_dssp             HHTTC
T ss_pred             HHHHh
Confidence            77764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=2.1e-19  Score=138.10  Aligned_cols=80  Identities=26%  Similarity=0.540  Sum_probs=69.2

Q ss_pred             CCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhh
Q 044007          298 PKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATG  373 (378)
Q Consensus       298 ~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~  373 (378)
                      ++||.|+  .|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|++++||.|.+|++.|.++..|.+
T Consensus         2 ~k~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            2 ERPYACPVESCD-RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             -CCEECCSSSCC-CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCceECCCCCCC-CccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            5788887  588 88888888888888 8888888888 99888888888888888888888899889999988888888


Q ss_pred             hhcCC
Q 044007          374 TNAIT  378 (378)
Q Consensus       374 H~rv~  378 (378)
                      |++++
T Consensus        81 H~~~H   85 (90)
T 1a1h_A           81 HTKIH   85 (90)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            88864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=2.4e-19  Score=142.38  Aligned_cols=90  Identities=23%  Similarity=0.479  Sum_probs=77.1

Q ss_pred             cCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCC
Q 044007          258 KIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGT  335 (378)
Q Consensus       258 ~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k  335 (378)
                      ..+++|.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.++++|.|. |++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYN----------LLIHERTHTDERPYTCDICH-KAFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHH----------HHHHHHHHCCSCCCBCSSSC-CBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CCCcCeECCCCCCccCCHHH----------HHHHHHHcCCCCCcCCCCcc-chhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            34578888888888888877          78888888888888888888 88888888888888 8888888888 888


Q ss_pred             ccCChHHHHHHHHHhcCCCCccc
Q 044007          336 TFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       336 ~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      .|.+...|..|+++|++++||.+
T Consensus        82 ~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           82 GFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             cccCHHHHHHHHHHhCCCCCCcC
Confidence            88888888888888888888865

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=1.6e-19  Score=136.19  Aligned_cols=78  Identities=24%  Similarity=0.454  Sum_probs=73.7

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcC
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      ||.|+.|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|++++||.|++|++.|.+...|.+|+|+
T Consensus         1 ~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICG-KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSC-CEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCc-ccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            68999999 99999999999999 9999999999 999999999999999999999999999999999999999999886


Q ss_pred             C
Q 044007          378 T  378 (378)
Q Consensus       378 ~  378 (378)
                      +
T Consensus        80 H   80 (82)
T 2kmk_A           80 H   80 (82)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=6.8e-19  Score=136.78  Aligned_cols=82  Identities=24%  Similarity=0.487  Sum_probs=74.0

Q ss_pred             cCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCC--CCcccCcchhccCChhhh
Q 044007          296 HCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH--TPAVNVNSTNMYGQKGAA  371 (378)
Q Consensus       296 ~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~--kpy~C~~C~k~F~~~~~L  371 (378)
                      .++++|.|+.|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|+++  +||.|.+|++.|.++..|
T Consensus         3 ~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            3 SGSSGVACEICG-KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCCSCEECSSSC-CEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCCeECCCCC-CccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHH
Confidence            457889999999 99999999999999 9999999999 999999999999999999987  899999999999999999


Q ss_pred             hhhhc-CC
Q 044007          372 TGTNA-IT  378 (378)
Q Consensus       372 ~~H~r-v~  378 (378)
                      .+|++ +|
T Consensus        82 ~~H~~~~H   89 (95)
T 2yt9_A           82 NGHIKQVH   89 (95)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhc
Confidence            99975 54

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=5.3e-19  Score=140.37  Aligned_cols=82  Identities=22%  Similarity=0.462  Sum_probs=78.9

Q ss_pred             cCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhh
Q 044007          296 HCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATG  373 (378)
Q Consensus       296 ~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~  373 (378)
                      ..+++|.|+.|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|++++||.|.+|++.|.+...|.+
T Consensus        13 ~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           13 KTKKEFICKFCG-RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCBCSSSC-CBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             CCCcCeECCCCC-CccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            456899999999 99999999999999 9999999999 99999999999999999999999999999999999999999


Q ss_pred             hhcCC
Q 044007          374 TNAIT  378 (378)
Q Consensus       374 H~rv~  378 (378)
                      |+++|
T Consensus        92 H~~~H   96 (106)
T 2ee8_A           92 HKTLH   96 (106)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=4e-19  Score=142.11  Aligned_cols=82  Identities=26%  Similarity=0.462  Sum_probs=71.4

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhh
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAA  371 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L  371 (378)
                      .|.++++|.| .|+ +.|.....|..|++ |.++++|.|. |++.|.+...|..|+++|.+++||.|++|++.|..+..|
T Consensus         4 ~h~~~k~~~C-~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (110)
T 2csh_A            4 GSSGDKLYPC-QCG-KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF   81 (110)
T ss_dssp             CCCCCCCEEC-TTS-CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHH
T ss_pred             CCCCCCCEec-cCC-CccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHH
Confidence            4667888888 888 88888888889988 8888889998 999998888888898888888889999999999988888


Q ss_pred             hhhhcC
Q 044007          372 TGTNAI  377 (378)
Q Consensus       372 ~~H~rv  377 (378)
                      .+|++.
T Consensus        82 ~~H~~~   87 (110)
T 2csh_A           82 HRHVTS   87 (110)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888864

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=7.8e-19  Score=136.71  Aligned_cols=89  Identities=21%  Similarity=0.373  Sum_probs=83.9

Q ss_pred             cCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCC
Q 044007          258 KIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGT  335 (378)
Q Consensus       258 ~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k  335 (378)
                      .++++|.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.++++|.|. |++
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   72 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDK----------LKTHMRCHTGVKPYKCKTCD-YAAADSSSLNKHLRIHSDERPFKCQICPY   72 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHH----------HHHHGGGCCCCCSEECSSSC-CEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred             CCCcCeECCCCCCccCCHHH----------HHHHHHhcCCCCCEeCCCCC-CccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence            45689999999999999988          89999999999999999999 99999999999999 9999999999 999


Q ss_pred             ccCChHHHHHHHHHhcCCCCcc
Q 044007          336 TFSRKDKLMGHVALFVGHTPAV  357 (378)
Q Consensus       336 ~F~~~~~L~~H~~~H~~~kpy~  357 (378)
                      .|.+...|..|+++|+++++..
T Consensus        73 ~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           73 ASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             EESSHHHHHHHHTTCCSCCCCC
T ss_pred             ccCCHHHHHHHHHHhcCCCCCC
Confidence            9999999999999999987643

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1e-19  Score=146.74  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh---ccCCCCee-cc-CCCcc--CChHHHHHHHHHhcCCCCcccCc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK---HCGDLKWQ-CS-CGTTF--SRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~---H~g~kp~~-C~-C~k~F--~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      ++.|++.|+++++|.|+.|+ +.|.....|..|++   |.+++++. |. |++.|  .+...|..|+++|++++||.|++
T Consensus         7 l~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~   85 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCS-AAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMY   85 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSS-CEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSS
T ss_pred             hhhheeeeCCCCCEECCccC-chhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCC
Confidence            67777777778888888888 78888888888876   55566544 77 88777  77777888888888888888888


Q ss_pred             chhccCChhhhhhhhcC
Q 044007          361 STNMYGQKGAATGTNAI  377 (378)
Q Consensus       361 C~k~F~~~~~L~~H~rv  377 (378)
                      |++.|.++..|.+|+++
T Consensus        86 C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           86 CGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             SCCBCSSHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHH
Confidence            88888888888888765

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.5e-19  Score=141.97  Aligned_cols=92  Identities=20%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             hhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHhccCCCCeecc-C
Q 044007          255 SAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS-C  333 (378)
Q Consensus       255 ~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C  333 (378)
                      +.|.++++|.|++|++.|.....          +..|++.|  .++|.|++|+ +.|.....|..|++|++++||.|. |
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~----------l~~H~~~H--~~~~~C~~C~-~~f~~~~~l~~H~~H~~~~~~~C~~C   75 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLE----------QGSHERLC--RNAAVCPYCS-LRFFSPELKQEHESKCEYKKLTCLEC   75 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHH----------HHHHHHHH--HHSBCCTTTC-CCBSSHHHHHHHHHHCSTGGGEEGGG
T ss_pred             cccCCCcCeECCCCCCccCCHHH----------HHHHHHHC--CCCccCCCCC-CccCCHHHHHHHHHcCCCCCccCccc
Confidence            34566677777777777777776          66676666  3677777777 777777777777777777777777 7


Q ss_pred             CCccCChHHHHHHHH-HhcCCCCcccC
Q 044007          334 GTTFSRKDKLMGHVA-LFVGHTPAVNV  359 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~-~H~~~kpy~C~  359 (378)
                      ++.|.+...|..|++ +|++++||.|.
T Consensus        76 ~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           76 MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            777777777777775 77777777764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.74  E-value=7.4e-19  Score=135.06  Aligned_cols=85  Identities=27%  Similarity=0.614  Sum_probs=78.5

Q ss_pred             CCcccCC--CCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCC
Q 044007          260 ARKYSCP--QEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGT  335 (378)
Q Consensus       260 ~k~~~C~--~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k  335 (378)
                      +++|.|+  .|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   70 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGS----------LTRHIRIHTGQKPFQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGR   70 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHH----------HHHHHHHHHCCCCEECTTTC-CEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCceECCCCCCCCccCCHHH----------HHHHHHHhCCCCCccCCCCC-cccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence            4899998  69999999988          89999999999999999999 99999999999999 9999999999 999


Q ss_pred             ccCChHHHHHHHHHhcCCCC
Q 044007          336 TFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       336 ~F~~~~~L~~H~~~H~~~kp  355 (378)
                      .|.+...|..|+++|+++++
T Consensus        71 ~f~~~~~l~~H~~~H~~~k~   90 (90)
T 1a1h_A           71 KFARSDERKRHTKIHLRQKD   90 (90)
T ss_dssp             EESSHHHHHHHHGGGGC---
T ss_pred             hhCCHHHHHHHHHHhcccCC
Confidence            99999999999999999863

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.1e-18  Score=139.11  Aligned_cols=86  Identities=14%  Similarity=0.226  Sum_probs=80.4

Q ss_pred             ccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccC
Q 044007          289 KNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYG  366 (378)
Q Consensus       289 ~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~  366 (378)
                      ..+++.|.++++|.|++|+ +.|.....|..|++ |  .++|.|. |++.|.+...|..|++ |++++||.|++|++.|.
T Consensus         5 ss~~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~   80 (107)
T 1wjp_A            5 SSGASPVENKEVYQCRLCN-AKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFK   80 (107)
T ss_dssp             CCCCCCCCCCCCCBCTTTC-CBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECS
T ss_pred             cccCcccCCCcCeECCCCC-CccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhC
Confidence            4567788999999999999 99999999999999 9  4799999 9999999999999996 99999999999999999


Q ss_pred             Chhhhhhhhc-CC
Q 044007          367 QKGAATGTNA-IT  378 (378)
Q Consensus       367 ~~~~L~~H~r-v~  378 (378)
                      ++..|.+|++ +|
T Consensus        81 ~~~~L~~H~~~~H   93 (107)
T 1wjp_A           81 SSFSIWRHQVEVH   93 (107)
T ss_dssp             SHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHc
Confidence            9999999997 54

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.72  E-value=5.2e-18  Score=129.96  Aligned_cols=80  Identities=24%  Similarity=0.490  Sum_probs=76.4

Q ss_pred             CCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhh
Q 044007          298 PKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAA  371 (378)
Q Consensus       298 ~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L  371 (378)
                      .++|.|+.  |+ +.|.....|..|++ |.++++|.|  . |++.|.+...|..|+++|++++||.|++|++.|.+...|
T Consensus         3 ~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCG-KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTC-CEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCC-CcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHH
Confidence            46899999  99 99999999999999 999999999  4 999999999999999999999999999999999999999


Q ss_pred             hhhhcCC
Q 044007          372 TGTNAIT  378 (378)
Q Consensus       372 ~~H~rv~  378 (378)
                      .+|+|+|
T Consensus        82 ~~H~~~H   88 (89)
T 2wbs_A           82 ALHMKRH   88 (89)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHhh
Confidence            9999975

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=2.4e-18  Score=129.68  Aligned_cols=80  Identities=26%  Similarity=0.593  Sum_probs=76.3

Q ss_pred             cccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCC
Q 044007          262 KYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSR  339 (378)
Q Consensus       262 ~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~  339 (378)
                      ||.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++.|.+
T Consensus         1 ~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   69 (82)
T 2kmk_A            1 SFDCKICGKSFKRSST----------LSTHLLIHSDTRPYPCQYCG-KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ   69 (82)
T ss_dssp             CEECSSSCCEESSHHH----------HHHHHHHHHTCCCEECSSSC-CEESSHHHHHHHHHHHHTCCCEECTTTSCEESS
T ss_pred             CccCCCCcccccCchh----------HHHHHHHcCCCCCeeCCcCC-hhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC
Confidence            5899999999999888          88999999999999999999 99999999999999 9999999999 9999999


Q ss_pred             hHHHHHHHHHhcC
Q 044007          340 KDKLMGHVALFVG  352 (378)
Q Consensus       340 ~~~L~~H~~~H~~  352 (378)
                      ...|..|+++|+|
T Consensus        70 ~~~l~~H~~~H~g   82 (82)
T 2kmk_A           70 SSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             hHHHHHHHHhhCC
Confidence            9999999999976

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-18  Score=140.34  Aligned_cols=102  Identities=16%  Similarity=0.119  Sum_probs=85.2

Q ss_pred             CccccchhhhhcCCCcccCCCCCccccccccCCCcccchhhccccccc--ccCCCcee-cCCCCCccC--CCHHHHHHHH
Q 044007          247 SSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKR--SHCPKMYV-CKRCNRKQF--SVLSDLRTHE  321 (378)
Q Consensus       247 ~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~--h~~~k~~~-C~~C~~k~F--~~~~~L~~H~  321 (378)
                      ..|..| ++.|.++++|.|++|++.|.....          +..|++.  |...+++. |+.|+ +.|  .....|..|+
T Consensus         5 ~~l~~H-~~~H~~~~~~~C~~C~k~f~~~~~----------L~~H~~~~~h~~~~~~~~C~~C~-~~f~f~~~~~l~~H~   72 (115)
T 2dmi_A            5 SSGKLY-GSIFTGASKFRCKDCSAAYDTLVE----------LTVHMNETGHYRDDNHETDNNNP-KRWSKPRKRSLLEME   72 (115)
T ss_dssp             CCCCCC-CCCCCCCCSEEBSSSSCEESSHHH----------HHHHHHHTCCCBCSCCCCCCCCC-SCCSSCCCCCCCCCC
T ss_pred             hhhhhh-eeeeCCCCCEECCccCchhcCHHH----------HHHHHHHhCccccCCCccCCCCC-cccccccHHHHHHHh
Confidence            445556 467778899999999999998888          8888877  66666654 99999 888  8899999999


Q ss_pred             h-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          322 K-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       322 ~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      + |++++||.|+ |++.|.++..|..|+++|.......++.
T Consensus        73 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             CSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             hccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCCC
Confidence            9 9999999999 9999999999999999988776666554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.71  E-value=9.4e-18  Score=131.44  Aligned_cols=80  Identities=21%  Similarity=0.425  Sum_probs=74.9

Q ss_pred             CCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhh
Q 044007          298 PKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAA  371 (378)
Q Consensus       298 ~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L  371 (378)
                      .++|.|..  |+ +.|.....|..|++ |.++++|.|  . |++.|.+...|..|+++|++++||.|.+|++.|.++..|
T Consensus        13 ~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           13 RRIHYCDYPGCT-KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             CCCEECCSSSCC-CEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             CcceEcCCCCCC-CcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            47899996  99 99999999999999 999999999  5 999999999999999999999999999999999999999


Q ss_pred             hhhhcCC
Q 044007          372 TGTNAIT  378 (378)
Q Consensus       372 ~~H~rv~  378 (378)
                      .+|+|+|
T Consensus        92 ~~H~~~H   98 (100)
T 2ebt_A           92 ALHMKRH   98 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999864

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.71  E-value=7.5e-18  Score=120.00  Aligned_cols=56  Identities=23%  Similarity=0.570  Sum_probs=47.1

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      ||||+|++|| +.|...+.|..|++ |+|++||.|. ||++|.+...|..|+++|+|++
T Consensus         2 EKpy~C~~C~-k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCG-KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTC-CEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCC-CEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6788888888 88888888888888 8888888888 8888888888888888888764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.70  E-value=6.1e-18  Score=120.48  Aligned_cols=54  Identities=15%  Similarity=0.344  Sum_probs=52.4

Q ss_pred             CCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          325 GDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       325 g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      .||||.|. ||++|.+...|..|+++|+|++||.|.+||+.|.+++.|++|+|+|
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            37999999 9999999999999999999999999999999999999999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.6e-17  Score=128.98  Aligned_cols=85  Identities=26%  Similarity=0.471  Sum_probs=79.5

Q ss_pred             cCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCC--CCeecc-C
Q 044007          258 KIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGD--LKWQCS-C  333 (378)
Q Consensus       258 ~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~--kp~~C~-C  333 (378)
                      .++++|.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.++  ++|.|. |
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~~~C~~C   71 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYH----------LNRHKLSHSGEKPYSCPVCG-LRFKRKDRMSYHVRSHDGSVGKPYICQSC   71 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHH----------HHHHHHHSCSSCSEECSSSC-CEESCHHHHHHHHHHHCCCCCSSBCCSSS
T ss_pred             CCCCCeECCCCCCccCChHH----------HHHHHHhcCCCCCCcCCCCC-CccCCHHHHHHHHHHhcCCCCCceECCCc
Confidence            35689999999999999988          89999999999999999999 99999999999999 9987  999999 9


Q ss_pred             CCccCChHHHHHHHH-HhcCC
Q 044007          334 GTTFSRKDKLMGHVA-LFVGH  353 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~-~H~~~  353 (378)
                      ++.|.+...|..|++ +|.++
T Consensus        72 ~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           72 GKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CCCBSSHHHHHHHHHHTSCCC
T ss_pred             cchhCCHHHHHHHHHHhcCCC
Confidence            999999999999995 88875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=4.8e-18  Score=130.41  Aligned_cols=77  Identities=25%  Similarity=0.467  Sum_probs=73.7

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhh
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                      ++||.|+.|+ +.|.....|..|++ |.+++||.|+ |++.|.+...|..|+++|++ .+|.|+.|++.|.....|..|.
T Consensus         1 ek~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            1 MKPFQCRICM-RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             CCCEECTTTC-CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCC-CccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHH
Confidence            4799999999 99999999999999 9999999999 99999999999999999985 8999999999999999999997


Q ss_pred             c
Q 044007          376 A  376 (378)
Q Consensus       376 r  376 (378)
                      +
T Consensus        79 ~   79 (88)
T 1llm_C           79 A   79 (88)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=1.7e-17  Score=132.60  Aligned_cols=85  Identities=26%  Similarity=0.474  Sum_probs=80.7

Q ss_pred             hhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          256 AIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       256 ~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++++|.| .|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.++++|.|. |
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQ----------RDRHMSMHLGLRPYGCGVCG-KKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHH----------HHHHHHHHSCCCSEECTTTS-CEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCCEec-cCCCccCCHHH----------HHHHHHHcCCCcCccCCCCC-cccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            4677899999 99999999988          99999999999999999999 99999999999999 9999999999 9


Q ss_pred             CCccCChHHHHHHHHHhcC
Q 044007          334 GTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~~H~~  352 (378)
                      ++.|.+...|..|+++|.+
T Consensus        72 ~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           72 AKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CCEESCHHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHccc
Confidence            9999999999999999864

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.2e-16  Score=121.40  Aligned_cols=77  Identities=26%  Similarity=0.414  Sum_probs=72.6

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCC----CCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGD----LKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~----kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +.+|+++|+++++|.|+.|+ +.|.....|..|++ |.++    ++|.|. |++.|.+...|..|+++|+++++|.|..|
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~-~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~   81 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCD-KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS   81 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSS-CEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCC
T ss_pred             cccccceecCCCCCcCCCCC-CccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCC
Confidence            67899999999999999999 99999999999998 6654    799999 99999999999999999999999999999


Q ss_pred             hhcc
Q 044007          362 TNMY  365 (378)
Q Consensus       362 ~k~F  365 (378)
                      +..|
T Consensus        82 ~~~~   85 (86)
T 1x6h_A           82 GPSS   85 (86)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=4.3e-16  Score=116.57  Aligned_cols=70  Identities=26%  Similarity=0.411  Sum_probs=66.0

Q ss_pred             cCCCceecCC--CCCccCCCHHHHHHHHh--ccCCCCeecc---CCCccCChHHHHHHHHHhcCCCCcccCcchhccC
Q 044007          296 HCPKMYVCKR--CNRKQFSVLSDLRTHEK--HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYG  366 (378)
Q Consensus       296 ~~~k~~~C~~--C~~k~F~~~~~L~~H~~--H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~  366 (378)
                      +++++|.|..  |+ +.|.....|..|++  |.+++||.|+   |++.|.++..|..|+++|++++||.|.+|++.|.
T Consensus         3 ~~~~~~~C~~~~C~-~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCG-RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTC-CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCc-CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            4678999987  99 99999999999997  9999999996   9999999999999999999999999999999995

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.63  E-value=2.6e-16  Score=123.15  Aligned_cols=82  Identities=28%  Similarity=0.491  Sum_probs=77.5

Q ss_pred             CCcccCCC--CCccccccccCCCcccchhhcccccccccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          260 ARKYSCPQ--EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       260 ~k~~~C~~--C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .++|.|+.  |++.|.....          +..|++.|+++++|.|.  .|+ +.|.....|..|++ |++++||.|. |
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C   81 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSH----------LKAHLRTHTGEKPYKCTWEGCD-WRFARSDELTRHYRKHTGAKPFQCGVC   81 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHH----------HHHHHHHHSCCCCEECCSSSCC-CEESSHHHHHHHHHHHTSCCSCBCSSS
T ss_pred             CcceEcCCCCCCCcccCHHH----------HHHHHHHhCCCCCeeCCCCCCC-CccCCHHHHHHHHHHhCCCCCeECCCC
Confidence            47899997  9999999988          89999999999999996  699 99999999999999 9999999999 9


Q ss_pred             CCccCChHHHHHHHHHhcC
Q 044007          334 GTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~~H~~  352 (378)
                      ++.|.+...|..|+++|++
T Consensus        82 ~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHHHCC
T ss_pred             cCccCCHHHHHHHHHHhCC
Confidence            9999999999999999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.62  E-value=1.7e-17  Score=136.50  Aligned_cols=108  Identities=13%  Similarity=0.063  Sum_probs=82.5

Q ss_pred             hhcCCCcccCCCCCccccccccCCCcccchhhcccc---cccccCCCceecCCCCCccC------CCHHHHHHHHhccCC
Q 044007          256 AIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNH---YKRSHCPKMYVCKRCNRKQF------SVLSDLRTHEKHCGD  326 (378)
Q Consensus       256 ~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H---~~~h~~~k~~~C~~C~~k~F------~~~~~L~~H~~H~g~  326 (378)
                      .+.+.++|.|...+.....  .          ...+   ......++.+.|++|+ +.|      .....|..|++|+++
T Consensus         6 ~~~~~k~~~~~~k~~~~~~--s----------~ee~~~~~~l~~~~~~~~c~~~~-~~~~~~~~~~~~~~l~~h~~h~~~   72 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIHV--T----------LEELKRYHQLTPEQKRLIRAIVK-TLIHNPQLLDESSYLYRLLASKAI   72 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEEC--C----------HHHHHHHTTSCHHHHHHHHHHHH-HHHHCGGGTTTHHHHHHHHHHHHH
T ss_pred             hcccccccccccCCeeeee--c----------HHhhhccccCChhhCcccchhhh-cccCCCcccCCHHHHHHHHHhCCC
Confidence            4567788888776543321  1          1112   1122234667777776 555      477888888889999


Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      +||.|. |++.|.+...|..|+++|  ++||.|++|++.|.++..|++|++++
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK  123 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHH
Confidence            999999 999999999999999999  89999999999999999999999864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=4.4e-16  Score=116.22  Aligned_cols=67  Identities=31%  Similarity=0.709  Sum_probs=63.0

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      +...+.++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         9 ~~~~~~~~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A            9 SEWQQRERRRYKCDECG-KSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCCCCSCSSBCSSSC-CBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCC-cccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34456678999999999 99999999999999 9999999999 99999999999999999999999998

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.62  E-value=2.7e-16  Score=120.31  Aligned_cols=80  Identities=29%  Similarity=0.541  Sum_probs=76.3

Q ss_pred             CcccCCC--CCccccccccCCCcccchhhcccccccccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc-CC
Q 044007          261 RKYSCPQ--EGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CG  334 (378)
Q Consensus       261 k~~~C~~--C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~  334 (378)
                      ++|.|+.  |++.|.....          +..|++.|+++++|.|+  .|+ +.|.....|..|++ |.+++||.|+ |+
T Consensus         4 ~~~~C~~~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~   72 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSH----------LKAHLRTHTGEKPYHCDWDGCG-WKFARSDELTRHYRKHTGHRPFQCQKCD   72 (89)
T ss_dssp             CCEECCSTTTCCEESSHHH----------HHHHHTTSCSSCCEECCSTTTC-CEESSHHHHHHHHHHHHCCCCEECSSSS
T ss_pred             CCeeCCCCCCCCcCCCHHH----------HHHHHHhcCCCCCcCCCCCCCC-CccCCHHHHHHHHHHcCCCCCccCCCCC
Confidence            7899999  9999999988          89999999999999997  699 99999999999999 9999999999 99


Q ss_pred             CccCChHHHHHHHHHhc
Q 044007          335 TTFSRKDKLMGHVALFV  351 (378)
Q Consensus       335 k~F~~~~~L~~H~~~H~  351 (378)
                      +.|.+...|..|+++|.
T Consensus        73 ~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           73 RAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEESSHHHHHHHGGGGC
T ss_pred             cccCCHHHHHHHHHhhC
Confidence            99999999999999984

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.61  E-value=4e-16  Score=118.09  Aligned_cols=75  Identities=25%  Similarity=0.426  Sum_probs=71.9

Q ss_pred             ceec--CCCCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHhcCCCCcccCc---chhccCChhh
Q 044007          300 MYVC--KRCNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHTPAVNVN---STNMYGQKGA  370 (378)
Q Consensus       300 ~~~C--~~C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~---C~k~F~~~~~  370 (378)
                      ||.|  +.|+ +.|.....|..|++ |.+++||.|  + |++.|.+...|..|+++|++   |.|..   |++.|.+...
T Consensus         1 p~~C~~~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCG-KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCC-CEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCC-cccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHH
Confidence            6899  9999 99999999999999 999999999  5 99999999999999999998   99999   9999999999


Q ss_pred             hhhhhcCC
Q 044007          371 ATGTNAIT  378 (378)
Q Consensus       371 L~~H~rv~  378 (378)
                      |.+|++++
T Consensus        77 l~~H~~~h   84 (85)
T 2j7j_A           77 YLKHVAEC   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99999864

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=9.5e-16  Score=121.16  Aligned_cols=69  Identities=22%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh--c---cCCCCeecc-CCCccCChHHHHHH-HHHhcCCCCcccCcchh
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK--H---CGDLKWQCS-CGTTFSRKDKLMGH-VALFVGHTPAVNVNSTN  363 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H---~g~kp~~C~-C~k~F~~~~~L~~H-~~~H~~~kpy~C~~C~k  363 (378)
                      ...+++||.|+.|+ +.|...+.|..|++  |   .+++||.|. ||++|.++..|..| +++|+|++||.|.++.+
T Consensus        12 ~~~gekpy~C~~Cg-k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~~   87 (102)
T 2ghf_A           12 NKKVEGGYECKYCT-FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR   87 (102)
T ss_dssp             CCCCCSSEECSSCS-CEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECCC
T ss_pred             cCCCCcCcCCCCCC-CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcccC
Confidence            34578999999999 99999999999996  8   678999999 99999999999999 89999999999998554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=3.1e-15  Score=110.67  Aligned_cols=62  Identities=32%  Similarity=0.761  Sum_probs=58.8

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCc
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                      .+.++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++.|.+...|..|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQ-ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSS-CCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCC-ceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45567999999999 99999999999999 9999999999 999999999999999999999997

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.2e-15  Score=117.90  Aligned_cols=69  Identities=14%  Similarity=0.254  Sum_probs=52.9

Q ss_pred             cccccccccCCCceecCCCCCccC-CCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHH-HHHhcCCCCccc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQF-SVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGH-VALFVGHTPAVN  358 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F-~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H-~~~H~~~kpy~C  358 (378)
                      +..|++.++++++|.|+.|+ +.| .....|..|++ | +++||.|. |++.|.++..|..| +++|+++..|.+
T Consensus        22 ~~~~~~~~~~~~~~~C~~C~-k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           22 EEQWYLEIVDKGSVSCPTCQ-AVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             HHHHHHHHHHTSCEECTTTC-SCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             HHHHHHHhcCCCCcCCCCCC-CCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            55677777777888888888 888 78888888888 8 88888888 88888888888888 777876544443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.1e-15  Score=118.17  Aligned_cols=74  Identities=22%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             cccccccccCCCceecCCCCCccCC-CHHHHHHHHh-ccC-CCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcch
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFS-VLSDLRTHEK-HCG-DLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNST  362 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~-~~~~L~~H~~-H~g-~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~  362 (378)
                      +..|++.|.++++|.|++|+ +.|. ....|..|++ |++ ++||.|. |++.|.++..|..|+++|++++|+......
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~-k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~~~~~   89 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCN-VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASE   89 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTC-CCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSCCCCCC
T ss_pred             HHHHHHHhccCCCcCCCCCC-CChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCCCCCCc
Confidence            66788999999999999999 9999 9999999999 998 9999999 999999999999999999999997765443

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.53  E-value=2.5e-16  Score=120.79  Aligned_cols=80  Identities=15%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             CCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCcc
Q 044007          260 ARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTF  337 (378)
Q Consensus       260 ~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F  337 (378)
                      ++||.|++|++.|.....          +..|++.|+++++|.|+.|+ +.|.....|..|++ |.+ .+|.|. |++.|
T Consensus         1 ek~~~C~~C~k~f~~~~~----------L~~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f   68 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDH----------LTTHIRTHTGEKPFACDICG-RKFARSDERKRHRDIQHI-LPILEDKVEELL   68 (88)
T ss_dssp             CCCEECTTTCCEESCHHH----------HHHHHHHHHCCCCEECTTTC-CEESSHHHHHHHHHHHTH-HHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHH----------HHHHHHHcCCCCCccCCCCC-CccCCHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence            379999999999999988          99999999999999999999 99999999999999 774 889999 99999


Q ss_pred             CChHHHHHHHHHhc
Q 044007          338 SRKDKLMGHVALFV  351 (378)
Q Consensus       338 ~~~~~L~~H~~~H~  351 (378)
                      .+...|..|++.+.
T Consensus        69 ~~~~~L~~H~~~~h   82 (88)
T 1llm_C           69 SKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH
Confidence            99999999996543

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.4e-14  Score=105.96  Aligned_cols=63  Identities=25%  Similarity=0.514  Sum_probs=59.1

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcc
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAV  357 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~  357 (378)
                      .|.++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++.|.+...|..|+++|++++|..
T Consensus         3 s~~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECS-YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSS-CEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            35678999999999 99999999999999 9999999999 9999999999999999999998865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-15  Score=119.90  Aligned_cols=68  Identities=7%  Similarity=0.006  Sum_probs=63.8

Q ss_pred             cCCCHHHHHHHHh-ccCCCCeecc-CCCccC-ChHHHHHHHHHhcC-CCCcccCcchhccCChhhhhhhhcC
Q 044007          310 QFSVLSDLRTHEK-HCGDLKWQCS-CGTTFS-RKDKLMGHVALFVG-HTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       310 ~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~-~~~~L~~H~~~H~~-~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      .+.....+..|++ |.++++|.|. |++.|. +...|..|+++|++ ++||.|.+|++.|.++..|++|+|+
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH
Confidence            4666677889999 9999999999 999999 99999999999999 9999999999999999999999975

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=1.9e-14  Score=105.82  Aligned_cols=63  Identities=30%  Similarity=0.568  Sum_probs=56.8

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      +.+.|.++++|.|+.|+ +.|.....|..|++ |.+++||.|. |++.|.+...|..|+++|+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECG-KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSC-CEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccCCCCCccCCCCC-CccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            45678888999999999 99999999999999 9999999999 9999999999999999998764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=4.8e-15  Score=109.12  Aligned_cols=58  Identities=24%  Similarity=0.516  Sum_probs=55.4

Q ss_pred             Hh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          321 EK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       321 ~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      .+ |++++||.|+ |++.|.+...|..|+++|++++||.|++|++.|.++..|.+|+|++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H   65 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH   65 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            45 9999999999 9999999999999999999999999999999999999999999863

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.49  E-value=9.4e-16  Score=126.02  Aligned_cols=85  Identities=16%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             CcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccC
Q 044007          261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFS  338 (378)
Q Consensus       261 k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~  338 (378)
                      +.+.|++|++.|......    ....-+..|+ +|++++||.|+.|+ +.|.....|..|++ |  ++||.|+ |++.|.
T Consensus        40 ~~~~c~~~~~~~~~~~~~----~~~~~l~~h~-~h~~~~~~~C~~C~-k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~  111 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLL----DESSYLYRLL-ASKAISQFVCPLCL-MPFSSSVSLKQHIRYT--EHTKVCPVCKKEFT  111 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGT----TTHHHHHHHH-HHHHHCSEECTTTC-CEESSHHHHHHHHHHT--CCCCBCTTTCCBCS
T ss_pred             CcccchhhhcccCCCccc----CCHHHHHHHH-HhCCCCCeECCCCC-cccCCHhHHHHHHHHC--CCCCCCCCCCcccC
Confidence            567788877777632211    0111144555 68899999999999 99999999999999 9  8999999 999999


Q ss_pred             ChHHHHHHHHHhcCC
Q 044007          339 RKDKLMGHVALFVGH  353 (378)
Q Consensus       339 ~~~~L~~H~~~H~~~  353 (378)
                      +...|..|+++|+|.
T Consensus       112 ~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          112 STDSALDHVCKKHNI  126 (129)
T ss_dssp             SHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHCCc
Confidence            999999999999875

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.49  E-value=4.7e-14  Score=107.58  Aligned_cols=63  Identities=17%  Similarity=0.330  Sum_probs=54.3

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHH-HHhcCCC
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHV-ALFVGHT  354 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~-~~H~~~k  354 (378)
                      .+..+...++|.|++|+ +.|.....|..|++ |++++||.|. |+++|.++..|..|+ ++|++|.
T Consensus        19 ~~~~~~~~~~h~C~~Cg-k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           19 VLGLSASAECHLCPVCG-ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCSSCCCCTTEECTTSC-CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCCEECCCCC-CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            34455667889999999 99999999999999 9999999999 999999999999997 6788774

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2e-14  Score=112.40  Aligned_cols=69  Identities=9%  Similarity=-0.065  Sum_probs=65.1

Q ss_pred             ccCCCHHHHHHHHh-ccCCCCeecc-CCCcc-CChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhh-hcCC
Q 044007          309 KQFSVLSDLRTHEK-HCGDLKWQCS-CGTTF-SRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGT-NAIT  378 (378)
Q Consensus       309 k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F-~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H-~rv~  378 (378)
                      ..|.....|..|++ |.+++||.|+ |++.| .++..|..|+++| +++||.|.+|+|.|..+..|++| +++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            56888889999999 9999999999 99999 9999999999999 99999999999999999999999 8764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.5e-14  Score=108.11  Aligned_cols=70  Identities=21%  Similarity=0.441  Sum_probs=64.7

Q ss_pred             cCCCcccCCC--CCccccccccCCCcccchhhcccccc-cccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          258 KIARKYSCPQ--EGCRWNKKHAKFQPLKSMICAKNHYK-RSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       258 ~~~k~~~C~~--C~k~F~~~~~~~k~~~c~~c~~~H~~-~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      +++++|.|..  |++.|.....          |+.|++ .|.++++|.|+.  |+ +.|.....|..|++ |++++||.|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~----------L~~H~~~~H~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   71 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQY----------LNHHKKYQHIHQKSFSCPEPACG-KSFNFKKHLKEHMKLHSDTRDYIC   71 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHH----------HHHHHHHGGGSCCCEECSCTTTC-CEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCCCccCCCCCCcCccCCHHH----------HHHHHHHHhCCCCCeECCCCCCc-CccCCHHHHHHHHHHhCCCCCeeC
Confidence            3458899987  9999999988          899998 799999999999  99 99999999999999 999999999


Q ss_pred             c-CCCccC
Q 044007          332 S-CGTTFS  338 (378)
Q Consensus       332 ~-C~k~F~  338 (378)
                      + |+++|.
T Consensus        72 ~~C~k~F~   79 (79)
T 2dlk_A           72 EFSGPSSG   79 (79)
T ss_dssp             CSSSCCCC
T ss_pred             CCCCCCCC
Confidence            9 999984

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.47  E-value=2.3e-14  Score=109.29  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhh-cCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTN-AIT  378 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~-rv~  378 (378)
                      +.+.++|.|+ |++.|.++..|..|+++|++++||.|++|++.|.++..|++|+ ++|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            6778999999 9999999999999999999999999999999999999999995 554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=1.5e-14  Score=101.01  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=28.4

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      +++|.|+.|+ +.|.....|..|++ |++++||.|+ |++.|.+...|..|+++|+
T Consensus         2 ~~~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCG-KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTC-CBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCc-chhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3455555555 55555555555555 5555555555 5555555555555555553

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=2.5e-14  Score=108.49  Aligned_cols=73  Identities=22%  Similarity=0.447  Sum_probs=66.2

Q ss_pred             hhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCC----CceecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          254 ESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCP----KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       254 ~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~----k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      +++|.++++|.|++|++.|.....          +..|++.++.+    ++|.|+.|+ +.|.....|..|++ |.++++
T Consensus         7 ~~~H~~~k~~~C~~C~~~f~~~~~----------l~~H~~~~~~~~~~~~~~~C~~C~-~~f~~~~~L~~H~~~h~~~~~   75 (86)
T 1x6h_A            7 GRTHTGEKPYACSHCDKTFRQKQL----------LDMHFKRYHDPNFVPAAFVCSKCG-KTFTRRNTMARHADNCAGPDG   75 (86)
T ss_dssp             STTCCCCCCEECSSSSCEESSHHH----------HHHHHHHTTCSSCCCCCEECSSSC-CEESCHHHHHHHHHHCCCCCS
T ss_pred             cceecCCCCCcCCCCCCccCCHHH----------HHHHHHHhcCCcCCCcceECCCCC-ChhCCHHHHHHHHHHccCCCC
Confidence            456677799999999999999888          88898887765    799999999 99999999999999 999999


Q ss_pred             eecc-CCCcc
Q 044007          329 WQCS-CGTTF  337 (378)
Q Consensus       329 ~~C~-C~k~F  337 (378)
                      +.|. |+.+|
T Consensus        76 ~~~~~~~~~~   85 (86)
T 1x6h_A           76 VEGENSGPSS   85 (86)
T ss_dssp             CCCCCCCCCC
T ss_pred             cccCCCCCCC
Confidence            9999 99876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=8.6e-15  Score=109.14  Aligned_cols=68  Identities=24%  Similarity=0.428  Sum_probs=59.3

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh--ccCC-CCeecc-CCCccCChHHHHHHHHHhc-CCCCc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK--HCGD-LKWQCS-CGTTFSRKDKLMGHVALFV-GHTPA  356 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H~g~-kp~~C~-C~k~F~~~~~L~~H~~~H~-~~kpy  356 (378)
                      +.+|+++|.+++||.|++|+ +.|.....|..|++  |.++ ++|.|+ |++.|.++..|..|+++|. ++.|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICH-ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTC-CEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcC-chhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            67899999999999999999 99999999999986  7765 899999 9999999999999998754 45553

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.46  E-value=3.1e-14  Score=107.48  Aligned_cols=75  Identities=28%  Similarity=0.511  Sum_probs=50.2

Q ss_pred             ceec--ccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCC--CCccccccccCCC
Q 044007          205 THYC--QVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQ--EGCRWNKKHAKFQ  280 (378)
Q Consensus       205 ~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~--C~k~F~~~~~~~k  280 (378)
                      +|.|  +.|++.|.....|..|++.|.++                             ++|.|+.  |++.|.....   
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~-----------------------------~~~~C~~~~C~~~f~~~~~---   48 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ-----------------------------LPYECPHEGCDKRFSLPSR---   48 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT-----------------------------CCEECCSTTCCCEESSHHH---
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC-----------------------------CCeeCCCCCCcCccCCHHH---
Confidence            4677  77777777777777777777665                             5666665  6666666655   


Q ss_pred             cccchhhcccccccccCCCceecCC---CCCccCCCHHHHHHHHh
Q 044007          281 PLKSMICAKNHYKRSHCPKMYVCKR---CNRKQFSVLSDLRTHEK  322 (378)
Q Consensus       281 ~~~c~~c~~~H~~~h~~~k~~~C~~---C~~k~F~~~~~L~~H~~  322 (378)
                             +..|++.|++   |.|..   |+ +.|.....|..|++
T Consensus        49 -------l~~H~~~h~~---~~C~~~~~C~-~~f~~~~~l~~H~~   82 (85)
T 2j7j_A           49 -------LKRHEKVHAG---YPCKKDDSCS-FVGKTWTLYLKHVA   82 (85)
T ss_dssp             -------HHHHHHHHHS---EECCSCSSCC-CEESSHHHHHHHHH
T ss_pred             -------HHHHHHHhCC---CCCCCCCCCC-CccCCHHHHHHHHH
Confidence                   5566666655   66666   66 66666666666665

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=2.5e-14  Score=104.57  Aligned_cols=55  Identities=16%  Similarity=0.081  Sum_probs=53.3

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      |.+++||.|. |++.|.+...|..|+++|++++||.|.+|++.|.++..|.+|+++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~   59 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK   59 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH
Confidence            7889999999 999999999999999999999999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.3e-13  Score=102.73  Aligned_cols=61  Identities=11%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             HHHHHh-ccCCCCeecc-CCCccCChHHHHHHHH-HhcCC-CCcccCcchhccCChhhhhhhhcC
Q 044007          317 LRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVA-LFVGH-TPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       317 L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~-kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      |.+|++ |++++||.|. |++.|.+...|..|++ .|.++ +||.|++|++.|.++..|.+|+++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            446888 9999999999 9999999999999996 68775 899999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.2e-14  Score=103.48  Aligned_cols=58  Identities=26%  Similarity=0.557  Sum_probs=33.2

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh--c-cCCCCeecc-CCCccCChHHHHHHHHHhcC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK--H-CGDLKWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H-~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      .|.+++||.|+.|+ +.|.....|..|++  | .+++||.|+ |++.|.+...|..|+++|++
T Consensus         4 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCS-RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTC-CEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCc-chhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            44555566666666 55666666666654  3 355556665 66666666666666555543

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=4e-14  Score=105.48  Aligned_cols=65  Identities=25%  Similarity=0.433  Sum_probs=61.2

Q ss_pred             hhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          256 AIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       256 ~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      .+.++++|.|++|++.|.....          +..|++.|+++++|.|++|+ +.|.....|..|++ |++++||.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~----------l~~H~~~h~~~~~~~C~~C~-~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSD----------LSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHH----------HHHHHTTTCCSCSEECSSSC-CEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHH----------HHHHHHHcCCCcCeeCCCCC-CccCCHHHHHHHHHHhCCCCCCCC
Confidence            4566799999999999999988          99999999999999999999 99999999999999 999999998

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=3.9e-14  Score=104.67  Aligned_cols=56  Identities=18%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      +.++++|.|. |++.|.+...|..|+++|++++||.|.+|++.|.++..|.+|+++|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH   68 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhc
Confidence            7889999999 9999999999999999999999999999999999999999999864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.43  E-value=1.1e-13  Score=96.48  Aligned_cols=53  Identities=23%  Similarity=0.225  Sum_probs=47.8

Q ss_pred             CCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcC
Q 044007          325 GDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       325 g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      |++||.|. |++.|.+...|..|+++|++++||.|++|++.|.++..|.+|+++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            57899999 999999999999999999999999999999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=4.8e-14  Score=103.76  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=41.2

Q ss_pred             HHHHHh--ccCCCCeec--c-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          317 LRTHEK--HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       317 L~~H~~--H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      |..|..  |.++++|.|  . |++.|.+...|..|+++|.+++||.|++|++.|..+..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            344444  666677777  3 7777777777777777777777777777777777777777776654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.41  E-value=2.1e-13  Score=95.17  Aligned_cols=54  Identities=24%  Similarity=0.528  Sum_probs=45.5

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      ||.|+.|+ +.|.....|..|++ |.+++||.|+ |++.|.+...|..|+++|++++
T Consensus         1 p~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECG-IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTC-CBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCc-CcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            57888888 88888888888888 8888888888 8888888888888888888765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=8.9e-14  Score=103.76  Aligned_cols=65  Identities=22%  Similarity=0.403  Sum_probs=58.3

Q ss_pred             ccCCCceecCCCCCccCCCHHHHHHHHh-ccC---CCCeecc-CCCccCChHHHHHHH-HHhcCCCCcccCc
Q 044007          295 SHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCG---DLKWQCS-CGTTFSRKDKLMGHV-ALFVGHTPAVNVN  360 (378)
Q Consensus       295 h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g---~kp~~C~-C~k~F~~~~~L~~H~-~~H~~~kpy~C~~  360 (378)
                      |+++++|.|++|+ +.|.....|..|++ |.+   +++|.|. |++.|.++..|..|+ +.|.+++|+....
T Consensus         2 h~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~   72 (78)
T 2d9h_A            2 SSGSSGLQCEICG-FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES   72 (78)
T ss_dssp             CCSCCCEECSSSC-CEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSSS
T ss_pred             CCCCcCeECCCCC-CeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcccc
Confidence            6789999999999 99999999999999 886   8999999 999999999999999 6788888876543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.2e-13  Score=98.09  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHH-h-cCCCCcccCcchhccCChhhhhhhhcC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVAL-F-VGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~-H-~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      |+|++||.|+ |++.|.+...|..|+++ | .+++||.|+.|++.|.++..|.+|+++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            8999999999 99999999999999988 7 689999999999999999999999875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=7.2e-14  Score=110.32  Aligned_cols=69  Identities=20%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             hhcCCCcccCCCCCccccccccCCCcccchhhccccccc-c---cCCCceecCCCCCccCCCHHHHHHH-Hh-ccCCCCe
Q 044007          256 AIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKR-S---HCPKMYVCKRCNRKQFSVLSDLRTH-EK-HCGDLKW  329 (378)
Q Consensus       256 ~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~-h---~~~k~~~C~~C~~k~F~~~~~L~~H-~~-H~g~kp~  329 (378)
                      ..++++||.|++|++.|..+..          |+.|++. |   .+++||.|+.|| +.|...+.|..| ++ |+|++||
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~----------L~~H~r~~H~~~~~ekpf~C~~Cg-k~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNM----------FTFHVDSEHPNVVLNSSYVCVECN-FLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHH----------HHHHHHHHCSSCCCSCCEEETTTT-EEESSTHHHHTHHHHTSTTCCCE
T ss_pred             cCCCCcCcCCCCCCCccCCHHH----------HHHHHHhhCCCCCCCCCcCCCCCC-cccCCHHHHHHHHHHhcCCCCCe
Confidence            3467899999999999999998          8999874 7   568999999999 999999999999 78 9999999


Q ss_pred             ecc-CCC
Q 044007          330 QCS-CGT  335 (378)
Q Consensus       330 ~C~-C~k  335 (378)
                      .|. +..
T Consensus        81 ~C~~~~~   87 (102)
T 2ghf_A           81 KLTMVKR   87 (102)
T ss_dssp             EEEECCC
T ss_pred             eCCcccC
Confidence            998 654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.9e-13  Score=100.92  Aligned_cols=54  Identities=17%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcC---CCCcccCcchhccCChhhhhhhhc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVG---HTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~---~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |+|++||.|. |++.|.+...|..|+++|++   ++||.|.+|++.|..+..|.+|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            5677778887 88888777777778777775   677888778888877777777773

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.39  E-value=2e-13  Score=95.20  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      ||.|. |++.|.+...|..|+++|++++||.|+.|++.|.+...|.+|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHh
Confidence            79999 9999999999999999999999999999999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.4e-15  Score=109.61  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHhccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +..|++.|.++++|.|+.|+ +.|.....|..      +++|.|. |++.|.+...|..|+++|++++||.|++|
T Consensus         6 l~~H~~~h~~~~~~~C~~C~-k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCG-IIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSC-CEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHHhCCCCCeeCCccc-chhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            66677777777777777777 77777766554      6778888 88888888888888888888888888776

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=2.4e-13  Score=95.94  Aligned_cols=54  Identities=28%  Similarity=0.776  Sum_probs=40.0

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHH-HHhcCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHV-ALFVGH  353 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~-~~H~~~  353 (378)
                      +||.|+.|+ +.|.....|..|++ |++++||.|+ |++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C~~C~-~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCT-RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTC-CCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCc-cccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            467777777 77777777777777 7777777777 777777777777776 567654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.4e-12  Score=100.78  Aligned_cols=60  Identities=28%  Similarity=0.508  Sum_probs=56.7

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh--ccCCCC--------eecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK--HCGDLK--------WQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~--H~g~kp--------~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      ..|.|+.|+ +.|.....|..|++  |.++++        |.|. |++.|.++..|..|+++|++++||.|+
T Consensus        24 ~~~~C~~C~-k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCD-RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCC-CCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccc-cccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999 99999999999997  888888        9999 999999999999999999999999996

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=6.6e-13  Score=93.63  Aligned_cols=52  Identities=15%  Similarity=0.305  Sum_probs=48.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhh-cCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTN-AIT  378 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~-rv~  378 (378)
                      +||.|. |++.|.+...|..|+++|++++||.|+.|++.|.++..|.+|+ ++|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            589999 9999999999999999999999999999999999999999995 554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=6e-13  Score=96.09  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC-cchhccCChhhhhhhhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV-NSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~-~C~k~F~~~~~L~~H~rv~  378 (378)
                      +.+++||.|. |++.|. ...|..|+++ ++++||.|+ .||+.|..++.|.+|+|+|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            4678899999 999999 9999999988 899999999 9999999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.6e-12  Score=94.29  Aligned_cols=57  Identities=32%  Similarity=0.645  Sum_probs=53.1

Q ss_pred             cccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          294 RSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       294 ~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      .+.++++|.|+  .|+ +.|.....|..|++ |.+++||.|. |++.|.+...|..|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~-k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCD-RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBC-CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCC-CccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            56678999997  599 99999999999999 9999999999 9999999999999999985

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=1.5e-12  Score=85.85  Aligned_cols=42  Identities=24%  Similarity=0.435  Sum_probs=36.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567 8888888888 88899988889999888888889988887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.8e-12  Score=86.24  Aligned_cols=42  Identities=21%  Similarity=0.537  Sum_probs=36.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            677 8888888888 88888888888888888888888888887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=2.6e-12  Score=88.85  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHH-HhcCCCCcccCcchhccCCh
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVA-LFVGHTPAVNVNSTNMYGQK  368 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~kpy~C~~C~k~F~~~  368 (378)
                      |.+++||.|+ |++.|.+...|..|++ +|++++||.|++|++.|.++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            6788999999 9999999999999986 89999999999999999763

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=1.9e-12  Score=86.23  Aligned_cols=43  Identities=23%  Similarity=0.589  Sum_probs=35.3

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|+ |++.|.++..|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=86.32  Aligned_cols=42  Identities=29%  Similarity=0.575  Sum_probs=34.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=86.37  Aligned_cols=43  Identities=26%  Similarity=0.575  Sum_probs=35.0

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888877

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.26  E-value=1.7e-12  Score=86.48  Aligned_cols=42  Identities=29%  Similarity=0.565  Sum_probs=36.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888877

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=86.48  Aligned_cols=42  Identities=21%  Similarity=0.565  Sum_probs=33.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            666 7788888888 88888888888888888888888888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=1.8e-12  Score=86.26  Aligned_cols=42  Identities=26%  Similarity=0.638  Sum_probs=34.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888776

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=86.29  Aligned_cols=43  Identities=21%  Similarity=0.583  Sum_probs=36.0

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            3677 8888888888 88888888888888888888888888877

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=1.8e-13  Score=100.16  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             CccccchhhhhcCCCcccCCCCCccccccccCCCcccchhhcccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccC
Q 044007          247 SSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCG  325 (378)
Q Consensus       247 ~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g  325 (378)
                      ..|..| ++.|.++++|.|++|++.|.....          +..       +++|.|+.|+ +.|.....|..|++ |+|
T Consensus         4 ~~l~~H-~~~h~~~~~~~C~~C~k~f~~~~~----------l~~-------~~~~~C~~C~-~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A            4 GSSGKR-QKIHLGDRSQKCSKCGIIFIRRST----------LSR-------RKTPMCEKCR-KDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             CSCCCC-CCCCCCCSEEECSSSCCEEECCCC----------CCC-------SSSCCCHHHH-HTCSCCCSSCCCSSCCCC
T ss_pred             hhHHHH-HHHhCCCCCeeCCcccchhCCHHH----------hCc-------CCCCCCCCCC-hhhcCHHHHHHHHHhhcC
Confidence            345555 456777788888888888887776          332       6788888888 88888888888888 888


Q ss_pred             CCCeecc-C
Q 044007          326 DLKWQCS-C  333 (378)
Q Consensus       326 ~kp~~C~-C  333 (378)
                      ++||.|+ |
T Consensus        65 ~~~~~C~~C   73 (73)
T 2ctu_A           65 KKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCC
T ss_pred             CCCCCCCCC
Confidence            8888887 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=86.15  Aligned_cols=42  Identities=29%  Similarity=0.604  Sum_probs=35.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=85.93  Aligned_cols=42  Identities=26%  Similarity=0.566  Sum_probs=35.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.9e-12  Score=86.24  Aligned_cols=43  Identities=21%  Similarity=0.586  Sum_probs=36.4

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            3677 8888888888 88888888888888888888888888877

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=86.11  Aligned_cols=43  Identities=23%  Similarity=0.475  Sum_probs=35.6

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3677 8888888888 88888888888888888888888888877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=86.41  Aligned_cols=42  Identities=21%  Similarity=0.530  Sum_probs=34.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            667 7888888888 88888888888888888888888888776

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.1e-12  Score=85.96  Aligned_cols=43  Identities=26%  Similarity=0.614  Sum_probs=35.3

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      .|++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.3e-12  Score=85.74  Aligned_cols=43  Identities=19%  Similarity=0.514  Sum_probs=35.9

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3677 8888888888 88888888888888888888888888876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.5e-12  Score=86.70  Aligned_cols=42  Identities=26%  Similarity=0.590  Sum_probs=32.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566 7777777777 77777777777777777777777777776

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=86.20  Aligned_cols=42  Identities=21%  Similarity=0.570  Sum_probs=34.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=86.28  Aligned_cols=42  Identities=24%  Similarity=0.576  Sum_probs=34.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            666 7888888888 88888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.3e-12  Score=85.79  Aligned_cols=43  Identities=19%  Similarity=0.518  Sum_probs=34.9

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      .|++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2e-12  Score=86.16  Aligned_cols=42  Identities=17%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            566 7777788887 88888888888888888888888888776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.25  E-value=1.6e-12  Score=86.53  Aligned_cols=42  Identities=29%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            666 7777777777 77778777778788777777778877776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2e-12  Score=86.09  Aligned_cols=42  Identities=24%  Similarity=0.479  Sum_probs=33.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566 7788888888 88888888888888888888888888776

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=86.05  Aligned_cols=43  Identities=19%  Similarity=0.480  Sum_probs=34.7

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      .|++ |++++||.|+ |++.|.+...|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888776

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-12  Score=86.31  Aligned_cols=42  Identities=26%  Similarity=0.569  Sum_probs=32.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            666 7777777777 77777777777777777777777777776

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.5e-12  Score=85.50  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=34.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.9e-12  Score=86.15  Aligned_cols=42  Identities=21%  Similarity=0.506  Sum_probs=33.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            566 7788888888 88888888888888888888888888776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.2e-12  Score=85.90  Aligned_cols=42  Identities=29%  Similarity=0.552  Sum_probs=33.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            566 7788888888 88888888888888888888888888776

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.2e-12  Score=85.83  Aligned_cols=42  Identities=24%  Similarity=0.529  Sum_probs=33.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            666 7777888888 88888888888888888888888888776

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.5e-12  Score=85.71  Aligned_cols=42  Identities=21%  Similarity=0.508  Sum_probs=35.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566 8888888888 88888888888888888888888888877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.9e-12  Score=86.18  Aligned_cols=42  Identities=21%  Similarity=0.551  Sum_probs=35.9

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888877

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.8e-12  Score=85.35  Aligned_cols=42  Identities=19%  Similarity=0.456  Sum_probs=34.8

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            566 8888888888 88888888888888888888888888877

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3e-12  Score=85.21  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=35.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567 8888888888 88888888888888888888888888877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.6e-12  Score=85.46  Aligned_cols=43  Identities=21%  Similarity=0.419  Sum_probs=35.7

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      .|++ |++++||.|+ |++.|.++..|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3667 8888888888 88888888888888888888888888877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.24  E-value=2.4e-12  Score=85.63  Aligned_cols=42  Identities=21%  Similarity=0.514  Sum_probs=33.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            667 7788888888 88888888888888888888888888776

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-12  Score=85.58  Aligned_cols=42  Identities=19%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.+...|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            666 7777888888 88888888888888888888888888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.3e-12  Score=85.68  Aligned_cols=42  Identities=26%  Similarity=0.603  Sum_probs=33.3

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            666 7778888888 88888888888888888888888888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3e-12  Score=85.11  Aligned_cols=42  Identities=21%  Similarity=0.533  Sum_probs=33.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.+...|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            666 7777778887 88888888888888888888888888776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-12  Score=85.70  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            666 7777777777 77777777777778777777777877776

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.8e-12  Score=85.38  Aligned_cols=42  Identities=29%  Similarity=0.559  Sum_probs=35.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.8e-12  Score=85.32  Aligned_cols=43  Identities=21%  Similarity=0.575  Sum_probs=34.3

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      .|++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3667 7888888888 88888888888888888888888888776

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.3e-12  Score=85.75  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            566 7777777777 77777777777778777777777877776

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.4e-12  Score=85.02  Aligned_cols=42  Identities=19%  Similarity=0.399  Sum_probs=35.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            566 8888888888 88888888888888888888888888877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.23  E-value=3.5e-12  Score=84.91  Aligned_cols=42  Identities=24%  Similarity=0.433  Sum_probs=34.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566 8888888888 88888888888888888888888888876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.2e-12  Score=85.05  Aligned_cols=42  Identities=21%  Similarity=0.605  Sum_probs=33.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            666 7778888888 88888888888888888888888888765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.22  E-value=2.8e-13  Score=96.77  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=37.6

Q ss_pred             HHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhh
Q 044007          318 RTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGT  374 (378)
Q Consensus       318 ~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H  374 (378)
                      ..|++ |+|++||.|+ |++.|.+...|.   ++|++++||.|+.||+.|....++..|
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            34666 7777777777 777777766665   677777777777777777776666544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.22  E-value=9.3e-12  Score=91.11  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=38.2

Q ss_pred             ccCCCCeecc---CCCccCChHHHHHHHHHhcCCCCcccCc--chhccCChhhhhhhhcCC
Q 044007          323 HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTPAVNVN--STNMYGQKGAATGTNAIT  378 (378)
Q Consensus       323 H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~kpy~C~~--C~k~F~~~~~L~~H~rv~  378 (378)
                      +.+.++|.|.   |++.|.+...|..|+++|++++||.|.+  |++.|..+..|.+|+|+|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3455666663   7777777777777777777777777754  777777777777777664

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.2e-12  Score=84.09  Aligned_cols=42  Identities=21%  Similarity=0.566  Sum_probs=35.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            667 8888888888 88888888888888888888888888765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.2e-12  Score=85.89  Aligned_cols=42  Identities=19%  Similarity=0.543  Sum_probs=34.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            667 7888888888 88888888888888888888888888776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5e-12  Score=84.40  Aligned_cols=42  Identities=21%  Similarity=0.506  Sum_probs=38.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHH-HhcCCCCcccCcc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVA-LFVGHTPAVNVNS  361 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~kpy~C~~C  361 (378)
                      |++ |++++||.|. |++.|.++..|..|++ +|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            677 9999999999 9999999999999998 9999999999887

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.1e-11  Score=82.44  Aligned_cols=41  Identities=24%  Similarity=0.522  Sum_probs=32.9

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            667 7888888888 8888888888888888888888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.16  E-value=1.2e-11  Score=80.53  Aligned_cols=40  Identities=30%  Similarity=0.651  Sum_probs=30.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            456 7777777777 777777777777777777777777774

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.16  E-value=1.2e-11  Score=82.27  Aligned_cols=41  Identities=24%  Similarity=0.575  Sum_probs=34.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            667 8888888888 8888888888888888888888888864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=1.9e-11  Score=80.85  Aligned_cols=40  Identities=30%  Similarity=0.557  Sum_probs=36.0

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcch
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNST  362 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~  362 (378)
                      |++++||.|. |++.|.++..|..|+++|++++||.|+.||
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            7888999999 999999999999999999999999999886

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=81.86  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=34.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            667 8888888888 8888888888888888888888888864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.4e-11  Score=81.78  Aligned_cols=41  Identities=22%  Similarity=0.551  Sum_probs=34.9

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            677 8888888888 8888888888888888888888888864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=81.59  Aligned_cols=41  Identities=22%  Similarity=0.519  Sum_probs=32.8

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            667 7888888888 8888888888888888888888888864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=82.16  Aligned_cols=41  Identities=29%  Similarity=0.658  Sum_probs=30.3

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=1.6e-11  Score=82.59  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchh
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTN  363 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k  363 (378)
                      |.++++|.|. |++.|.+...|..|+++|++++||.|++|+|
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            6677888888 8888888888888888888888888888875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.9e-11  Score=79.45  Aligned_cols=40  Identities=20%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456 7778888888 888888888888888888888888773

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.4e-11  Score=81.83  Aligned_cols=41  Identities=22%  Similarity=0.612  Sum_probs=30.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777763

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=81.50  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566 7777888888 888888888888888888888888876

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.6e-11  Score=81.54  Aligned_cols=41  Identities=27%  Similarity=0.561  Sum_probs=30.9

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=81.57  Aligned_cols=41  Identities=27%  Similarity=0.566  Sum_probs=30.3

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=81.77  Aligned_cols=41  Identities=20%  Similarity=0.459  Sum_probs=33.5

Q ss_pred             Hh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          321 EK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       321 ~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      ++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45 7788888888 88888888888888888888888888877

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=81.30  Aligned_cols=41  Identities=27%  Similarity=0.602  Sum_probs=32.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            666 7778888888 8888888888888888888888888763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.7e-11  Score=81.58  Aligned_cols=41  Identities=24%  Similarity=0.590  Sum_probs=30.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=81.77  Aligned_cols=41  Identities=29%  Similarity=0.595  Sum_probs=30.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.7e-11  Score=81.44  Aligned_cols=41  Identities=24%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            666 7788888888 8888888888888888888888888764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.13  E-value=8e-12  Score=86.34  Aligned_cols=49  Identities=16%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             ccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcc
Q 044007          309 KQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAV  357 (378)
Q Consensus       309 k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~  357 (378)
                      |.|.....|..|++ |++++||.|. |++.|.+...|..|+++|+|++||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            67888888888888 8888888888 9999988888989988888888874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.1e-11  Score=81.03  Aligned_cols=41  Identities=22%  Similarity=0.493  Sum_probs=33.3

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566 8888888888 8888888888888888888888888864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=81.37  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      +|++ |++++||.|. |++.|.++..|..|+++|++++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677 8888888888 8888888888888888888888888863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=81.60  Aligned_cols=41  Identities=22%  Similarity=0.593  Sum_probs=31.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.7e-11  Score=81.50  Aligned_cols=41  Identities=27%  Similarity=0.471  Sum_probs=34.9

Q ss_pred             Hh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          321 EK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       321 ~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      ++ |++++||.|. |++.|.++..|..|+++|++++||.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35 8888888888 88888888888888888888888888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.9e-11  Score=80.35  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             ccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          289 KNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       289 ~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      ++|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         1 ~~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECG-KNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSC-CEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccC-cccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3688999999999999999 99999999999999 9999999998 7

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=81.35  Aligned_cols=41  Identities=24%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            566 7777777777 7777777777777777777777777763

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=81.33  Aligned_cols=41  Identities=24%  Similarity=0.552  Sum_probs=30.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            566 7777777777 7777777777777777777777777753

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.4e-11  Score=79.83  Aligned_cols=40  Identities=23%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777774

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=81.68  Aligned_cols=41  Identities=22%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            556 7777777777 7777777777777777777777777763

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=81.04  Aligned_cols=40  Identities=23%  Similarity=0.575  Sum_probs=30.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777775

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.5e-11  Score=80.68  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=32.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            666 7788888888 888888888888888888888888876

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.2e-11  Score=80.90  Aligned_cols=40  Identities=25%  Similarity=0.609  Sum_probs=30.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.2e-11  Score=79.98  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            555 6666666666 666666666666666666666666663

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.8e-11  Score=79.15  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=41.2

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCG-KAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSC-CEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCC-hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.11  E-value=4.6e-11  Score=79.36  Aligned_cols=43  Identities=30%  Similarity=0.436  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|++++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECG-KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSC-CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.11  E-value=4.7e-11  Score=79.27  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECD-MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSC-CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCC-cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=4.4e-11  Score=79.46  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=41.2

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECG-RGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSC-CEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCC-CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=80.30  Aligned_cols=40  Identities=30%  Similarity=0.618  Sum_probs=25.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455 6666666666 666666666666666666666666663

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=79.20  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |+|++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICG-KSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSC-CEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.10  E-value=4.9e-11  Score=79.17  Aligned_cols=43  Identities=33%  Similarity=0.427  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECG-KVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSC-CEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCc-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.10  E-value=4.6e-11  Score=79.26  Aligned_cols=43  Identities=30%  Similarity=0.381  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |+|++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCA-KTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSS-CEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.2e-11  Score=79.05  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCG-KAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSC-CEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcC-CccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.1e-11  Score=79.24  Aligned_cols=39  Identities=26%  Similarity=0.618  Sum_probs=29.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            456 7777777777 77777777777777777777777776

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.4e-11  Score=78.98  Aligned_cols=43  Identities=28%  Similarity=0.368  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECG-KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTC-CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCC-CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.3e-11  Score=79.00  Aligned_cols=43  Identities=23%  Similarity=0.269  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICG-KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSC-CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=79.26  Aligned_cols=43  Identities=28%  Similarity=0.394  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECG-KAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSC-CEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=78.87  Aligned_cols=43  Identities=33%  Similarity=0.459  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECG-KSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTT-BCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCC-CccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.10  E-value=3.2e-11  Score=78.35  Aligned_cols=39  Identities=21%  Similarity=0.487  Sum_probs=30.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            456 7777888887 88888888888888888888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.2e-11  Score=79.06  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECG-KAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSC-CEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCC-hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.1e-11  Score=79.38  Aligned_cols=40  Identities=18%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            566 7777777777 777777777777777777777777773

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.7e-11  Score=78.81  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECG-KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTC-CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.8e-11  Score=79.21  Aligned_cols=43  Identities=35%  Similarity=0.491  Sum_probs=41.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|...+.|..|++ |+|++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECG-KAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSC-CEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.2e-11  Score=79.01  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTT-EECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcC-hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.5e-11  Score=80.66  Aligned_cols=40  Identities=25%  Similarity=0.589  Sum_probs=32.3

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |.+++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667 7888888888 888888888888888888888888876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.2e-11  Score=79.08  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECG-KAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSC-CEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCC-cccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.2e-11  Score=79.30  Aligned_cols=40  Identities=18%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            556 6677777777 777777777777777777777777663

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.2e-11  Score=79.01  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|+++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECG-KSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSC-CEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCC-hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.7e-11  Score=78.46  Aligned_cols=43  Identities=33%  Similarity=0.454  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCG-KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSC-CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccC-hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=5.9e-11  Score=78.74  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECG-KNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTC-CEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.9e-11  Score=78.78  Aligned_cols=43  Identities=28%  Similarity=0.352  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|++++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECG-KVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTC-CEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6e-11  Score=78.75  Aligned_cols=43  Identities=28%  Similarity=0.369  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECG-KVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSC-CEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCC-chhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=7.1e-11  Score=78.44  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=40.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCG-KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSC-CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.9e-11  Score=78.78  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=41.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECG-KAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSC-CEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCC-CeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5.9e-11  Score=78.01  Aligned_cols=42  Identities=29%  Similarity=0.301  Sum_probs=40.0

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      |++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCE-KAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSS-CEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCC-cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999 99999999999999 9999999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.6e-11  Score=78.90  Aligned_cols=43  Identities=26%  Similarity=0.441  Sum_probs=41.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECG-KRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTT-EEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999998 7

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.1e-11  Score=80.21  Aligned_cols=40  Identities=23%  Similarity=0.506  Sum_probs=29.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455 7777777777 777777777777777777777777775

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.9e-11  Score=78.78  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECG-KVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSC-CEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCC-CccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=3.9e-11  Score=92.48  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=55.6

Q ss_pred             CcccCCCCCccccccccCCCcccchhhccccccc-ccCCCc--------eecCCCCCccCCCHHHHHHHHh-ccCCCCee
Q 044007          261 RKYSCPQEGCRWNKKHAKFQPLKSMICAKNHYKR-SHCPKM--------YVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQ  330 (378)
Q Consensus       261 k~~~C~~C~k~F~~~~~~~k~~~c~~c~~~H~~~-h~~~k~--------~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~  330 (378)
                      ..|.|+.|++.|.....          |..|++. |.++++        |.|+.|+ +.|.....|..|++ |+|++||.
T Consensus        24 ~~~~C~~C~k~f~~~~~----------L~~H~~~~H~~~~~~~~~~c~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHE----------LVTHVTMEHVGGPEQNNHVCYWEECPREG-KSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSSSCCCCCCCCSSHHH----------HHHHHHHTTTCCTTCSCCCCCCTTCSSTT-CCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CCCcccccccccCCHHH----------HHHHHHHhccCCCCCCccceeccCCCCCC-cccCCHHHHHHHHHhcCCCCCCC
Confidence            45789999999999888          8889887 777777        9999999 99999999999999 99999999


Q ss_pred             cc
Q 044007          331 CS  332 (378)
Q Consensus       331 C~  332 (378)
                      |+
T Consensus        93 C~   94 (95)
T 2ej4_A           93 SS   94 (95)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.08  E-value=8.2e-11  Score=85.98  Aligned_cols=56  Identities=29%  Similarity=0.617  Sum_probs=51.7

Q ss_pred             cccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCCCeec--c-CCCccCChHHHHHHHHHh
Q 044007          294 RSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQC--S-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       294 ~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H  350 (378)
                      .....++|.|..  |+ +.|.....|..|++ |++++||.|  . |++.|.++..|..|+++|
T Consensus        11 ~~~~~~~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCG-KTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTC-CEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CccccCceeCCCCCCc-cccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            445568999988  99 99999999999999 999999999  6 999999999999999886

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.6e-11  Score=78.88  Aligned_cols=43  Identities=28%  Similarity=0.429  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCG-KAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTC-CEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.9e-11  Score=78.39  Aligned_cols=43  Identities=30%  Similarity=0.437  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|+++++|.|+.|+ +.|.....|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECG-KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTC-CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCC-CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.4e-11  Score=78.28  Aligned_cols=43  Identities=26%  Similarity=0.328  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCG-KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTC-CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCC-ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=3.1e-11  Score=80.24  Aligned_cols=41  Identities=17%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcC-CCCcccCc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVG-HTPAVNVN  360 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~-~kpy~C~~  360 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++ ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566 7788888888 88888888888888888888 88888763

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=8.1e-11  Score=78.17  Aligned_cols=43  Identities=30%  Similarity=0.347  Sum_probs=40.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECG-KAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSC-CBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccC-hhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.1e-11  Score=78.37  Aligned_cols=43  Identities=30%  Similarity=0.392  Sum_probs=40.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECG-KGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSC-CEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCcc-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=2.8e-11  Score=78.70  Aligned_cols=39  Identities=26%  Similarity=0.615  Sum_probs=27.4

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|. |++.|.++..|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            455 6677777777 77777777777777777777777766

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.2e-11  Score=79.12  Aligned_cols=39  Identities=28%  Similarity=0.689  Sum_probs=25.6

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            455 6666666666 66666666666666666666666665

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.07  E-value=7.5e-11  Score=78.20  Aligned_cols=43  Identities=30%  Similarity=0.395  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECG-KSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSC-CEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccc-cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=6.2e-11  Score=78.61  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=41.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|...+.|..|++ |+|++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECG-KAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSC-CEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCC-CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=5.1e-11  Score=78.36  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            456 7777777777 777777777777777777777777774

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=79.92  Aligned_cols=40  Identities=28%  Similarity=0.617  Sum_probs=28.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++ |++++||.|+ |++.|.++..|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            556 7777777777 777777777777777777777777775

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.1e-11  Score=79.08  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|+++|++++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSC-CEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCC-chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.06  E-value=7e-11  Score=78.46  Aligned_cols=43  Identities=30%  Similarity=0.376  Sum_probs=40.5

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECG-KGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSC-CCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.5e-11  Score=79.93  Aligned_cols=41  Identities=24%  Similarity=0.453  Sum_probs=32.6

Q ss_pred             HHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          319 THEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       319 ~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      .|++ |++++||.|. |++.|.+...|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3667 7888888888 888888888888888888888888875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.6e-11  Score=78.25  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=40.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCG-KGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTT-EEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCC-CccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.1e-11  Score=78.21  Aligned_cols=43  Identities=26%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECG-KAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTT-BCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999 99999999999999 9999999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.06  E-value=1e-10  Score=77.66  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=40.6

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|. |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCE-KSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSS-CEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999 99999999999999 9999999998 7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.3e-11  Score=78.32  Aligned_cols=43  Identities=30%  Similarity=0.397  Sum_probs=41.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECG-KTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTT-EEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCC-cccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=9.6e-11  Score=77.74  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=40.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.+++||.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECG-KGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSC-CEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-CcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 7

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=9.4e-11  Score=77.78  Aligned_cols=43  Identities=33%  Similarity=0.420  Sum_probs=40.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|+++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECG-KAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSC-CEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCC-chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999998 5

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=8.1e-11  Score=84.68  Aligned_cols=57  Identities=23%  Similarity=0.540  Sum_probs=40.7

Q ss_pred             CCCceecCCCCCccCCCHHHHHHHHhccCCCCeecc--CCCccCChHHHHHHHHHhcCCCC
Q 044007          297 CPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS--CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       297 ~~k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~--C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      +++||.|+.|+ +.|. .+.|..|++-++++||.|+  |++.|..+..|..|+++|...+|
T Consensus         7 ~~~~~~C~~C~-k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCT-KEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSC-CEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccC-CccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            34677777777 7777 7777777665667777776  77777777777777777766554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=9.7e-11  Score=77.71  Aligned_cols=43  Identities=21%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECG-EIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTC-CEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccC-hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999 99999999999999 9999999998 7

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5.9e-11  Score=78.80  Aligned_cols=43  Identities=21%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      +|++.|+++++|.|+.|+ +.|...+.|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECG-KSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTC-CEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578889999999999999 99999999999999 9999999998 7

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.4e-10  Score=75.85  Aligned_cols=38  Identities=18%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++++||.|. |++.|.++..|..|+++|++++||.|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            7888899999 9999999999999999999999998864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=77.35  Aligned_cols=40  Identities=23%  Similarity=0.512  Sum_probs=33.2

Q ss_pred             Hh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          321 EK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       321 ~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      ++ |++++||.|. |++.|.++..|..|+++|++++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            45 7888888888 8888888888888888888888888864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=8.1e-11  Score=77.42  Aligned_cols=39  Identities=23%  Similarity=0.486  Sum_probs=26.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            555 6666677776 77777777777777777777676665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=77.22  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|+++|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECG-KGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSC-CEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccC-chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            377889999999999999 99999999999999 9999999998 7

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=4.4e-11  Score=78.61  Aligned_cols=39  Identities=18%  Similarity=0.411  Sum_probs=29.2

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++ |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            566 7777777777 77777777777777777777777776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=7.5e-11  Score=77.94  Aligned_cols=38  Identities=24%  Similarity=0.604  Sum_probs=31.0

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      |++++||.|. |++.|.+...|..|+++|++++||.|++
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            7788888888 8888888888888888888888888863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=76.45  Aligned_cols=43  Identities=26%  Similarity=0.351  Sum_probs=40.6

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECG-KAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSC-CEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCC-chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999998 5

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.01  E-value=2.3e-10  Score=78.85  Aligned_cols=46  Identities=28%  Similarity=0.464  Sum_probs=41.6

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh--ccCCCCeecc-CCCccCCh
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK--HCGDLKWQCS-CGTTFSRK  340 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H~g~kp~~C~-C~k~F~~~  340 (378)
                      .|.+++||.|+.|+ +.|.....|..|++  |.+++||.|. |++.|.++
T Consensus         6 ~~~~~k~~~C~~C~-k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            6 SGSVGKPYICQSCG-KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCSSCCEECSSSC-CEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCeECCCCC-cccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            46678999999999 99999999999985  9999999999 99999863

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.00  E-value=2.4e-10  Score=74.14  Aligned_cols=41  Identities=24%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      |++.|.++++|.|+.|+ +.|...+.|..|++ |+|++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECG-KAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSC-CEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcC-hhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67788999999999999 99999999999999 9999999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.00  E-value=5.6e-11  Score=84.62  Aligned_cols=53  Identities=17%  Similarity=0.355  Sum_probs=47.2

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHH
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLM  344 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~  344 (378)
                      |..|++.|.+++||.|+.|+ +.|.....|.   + |+|++||.|. |++.|.....+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~-k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCS-STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSC-CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCC-chhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            56788999999999999999 9999998886   7 9999999999 999998776543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.6e-10  Score=75.62  Aligned_cols=42  Identities=31%  Similarity=0.450  Sum_probs=40.1

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCS-KAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSC-CEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999996

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.8e-10  Score=75.45  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECG-KRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSC-CCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCC-cccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999996

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=75.49  Aligned_cols=42  Identities=26%  Similarity=0.421  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.+++||+|+.|+ +.|...+.|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECG-KAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSC-CEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.7e-10  Score=75.58  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECG-KAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSC-CEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCC-CccCCHHHHHHHHHhcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.2e-10  Score=75.12  Aligned_cols=42  Identities=29%  Similarity=0.382  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSC-CBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCC-cccCCHHHHHHHHHhhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.2e-10  Score=74.29  Aligned_cols=42  Identities=29%  Similarity=0.413  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECG-KAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTC-CCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCC-CccCCHHHHHHHhhhcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999995

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.4e-10  Score=75.01  Aligned_cols=42  Identities=24%  Similarity=0.423  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECG-KVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTC-CBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.2e-10  Score=75.13  Aligned_cols=42  Identities=31%  Similarity=0.456  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECG-KAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSC-CCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999996

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.5e-10  Score=73.71  Aligned_cols=36  Identities=28%  Similarity=0.658  Sum_probs=27.9

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCccc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVN  358 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C  358 (378)
                      |++++||.|. |++.|.+...|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6777777777 77777777777777777777777776

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.97  E-value=3e-10  Score=75.34  Aligned_cols=42  Identities=31%  Similarity=0.489  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECG-KSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSS-CEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=74.98  Aligned_cols=42  Identities=33%  Similarity=0.492  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCG-KEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSC-CBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=74.94  Aligned_cols=42  Identities=26%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECG-KAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSC-CEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCC-cccCCHHHHHHHHhHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=74.35  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|...+.|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQ-ATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTC-CEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCcCCC
Confidence            588899999999999999 99999999999999 9999999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.7e-10  Score=74.76  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCG-KSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSC-CCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999996

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=74.09  Aligned_cols=42  Identities=26%  Similarity=0.469  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQ-KAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTC-CEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCC-cccCCHhHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999995

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.3e-10  Score=75.04  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECG-KAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSC-CEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccC-ChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=74.93  Aligned_cols=42  Identities=31%  Similarity=0.456  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECG-KAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTT-CCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999996

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.5e-10  Score=74.90  Aligned_cols=42  Identities=29%  Similarity=0.463  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|+++|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECG-KSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSC-CEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCC-hhhCChHHHHHHHHhcCCCCCcCCC
Confidence            478899999999999999 99999999999999 9999999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.4e-10  Score=74.98  Aligned_cols=42  Identities=29%  Similarity=0.393  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECG-KVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSC-CCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCC-cccCChhHHHHHhHhcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999995

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.2e-10  Score=75.22  Aligned_cols=42  Identities=29%  Similarity=0.439  Sum_probs=40.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCG-KAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSC-CEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccC-CccCCHhHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999996

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.2e-10  Score=76.60  Aligned_cols=39  Identities=31%  Similarity=0.571  Sum_probs=24.9

Q ss_pred             ccCCCCeecc---CCCccCChHHHHHHHHHhcCCCCcccCcc
Q 044007          323 HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTPAVNVNS  361 (378)
Q Consensus       323 H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~kpy~C~~C  361 (378)
                      |++++||.|.   |++.|.++..|..|+++|++++||.|..|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5666666662   66666666666666666666666666655

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.2e-10  Score=72.89  Aligned_cols=41  Identities=27%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      |+++|.+++||.|+.|+ +.|...+.|..|++ |++++||.|.
T Consensus         1 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECK-ETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTC-CBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCC-CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67789999999999999 99999999999999 9999999984

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=74.72  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQ-KAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSC-CEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999995

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.5e-10  Score=74.10  Aligned_cols=42  Identities=26%  Similarity=0.384  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECG-KVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTT-EECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCC-CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999995

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=74.59  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECG-KAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSC-CEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCC-CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.2e-10  Score=75.19  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCG-KAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTT-EEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999996

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.3e-10  Score=74.58  Aligned_cols=42  Identities=29%  Similarity=0.477  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECR-KTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSC-CCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.9e-10  Score=73.70  Aligned_cols=41  Identities=29%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      +|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCG-KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTT-CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCcc-chhCCHHHHHHHHHHhCCCCCCCC
Confidence            478889999999999999 99999999999999 999999988

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.8e-10  Score=74.52  Aligned_cols=43  Identities=26%  Similarity=0.303  Sum_probs=40.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh--ccCCCCeecc-C
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK--HCGDLKWQCS-C  333 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~--H~g~kp~~C~-C  333 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++  |++++||.|. |
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECG-KAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSC-CCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccC-chhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            478899999999999999 99999999999987  9999999998 7

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=3.6e-10  Score=74.10  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCD-RVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSS-CEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCC-chhCCHHHHHHHhHhcCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999984

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.6e-10  Score=74.43  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=39.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECK-KTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTC-CBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccC-cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.8e-10  Score=74.26  Aligned_cols=42  Identities=29%  Similarity=0.393  Sum_probs=39.2

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      ++++|.++++|.|+.|+ +.|.....|..|++ |++++||.|. |
T Consensus         3 ~~~~h~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCH-KSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSC-CEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccC-cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45678899999999999 99999999999999 9999999998 7

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.1e-10  Score=74.56  Aligned_cols=42  Identities=29%  Similarity=0.426  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECG-KAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTC-CEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCC-CCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.7e-10  Score=73.20  Aligned_cols=41  Identities=27%  Similarity=0.402  Sum_probs=38.7

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      .|+++|.+++||.|+.|+ +.|.....|..|++ |++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCG-ARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTC-CEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcC-hhhCCHHHHHHHHHHcCCCCCCCC
Confidence            377889999999999999 99999999999999 999999998

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.6e-10  Score=74.32  Aligned_cols=42  Identities=36%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCG-KAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTT-EECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.1e-10  Score=74.24  Aligned_cols=42  Identities=31%  Similarity=0.426  Sum_probs=39.3

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCG-KAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSC-CBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCC-cccCcHHHHHHHHHhcCCCCCCCCC
Confidence            377889999999999999 99999999999999 9999999996

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.2e-10  Score=74.15  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=39.3

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCR-KAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTC-CBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcC-chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            477889999999999999 99999999999999 9999999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=5.1e-10  Score=72.60  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=38.0

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      |++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICG-TRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSC-CCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCC-CccCCHHHHHHHHHhcCCCCCCCC
Confidence            67889999999999999 99999999999999 999999988

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.3e-11  Score=89.42  Aligned_cols=64  Identities=23%  Similarity=0.479  Sum_probs=48.9

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHhccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEKHCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      +..|++.+.+++|+.|..|+ +.|. ...|..|+.|++++||.|+ |++.|.+ ..|..|+++|.+++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~-~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCD-LELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSC-CEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             HHhhCcccCCCcccCCcccC-hHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            66777777777888888888 7774 7788888777888888888 8887764 67778888877653

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.92  E-value=6.4e-10  Score=72.02  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=38.0

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      |++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~-k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCG-KSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSC-CEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCC-cccCCHHHHHHHhhhcCCCCCCCC
Confidence            67788999999999999 99999999999999 999999998

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.8e-10  Score=74.32  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECG-KGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSC-CCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999 99999999999999 9999999996

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=7e-10  Score=73.13  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=38.2

Q ss_pred             ccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CC
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CG  334 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~  334 (378)
                      ..|.+++||.|+.|+ +.|.....|..|++ |+++++|.|+ ||
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCG-LRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTT-EECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCC-cccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            357788999999999 99999999999999 9999999999 97

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=7.3e-10  Score=74.24  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=37.6

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGT  335 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k  335 (378)
                      .+..+++|.|++|+ +.|.....|..|++ |++++||.|. |+|
T Consensus         6 ~~~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICG-KIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTT-EEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCC-cccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            45667899999999 99999999999999 9999999999 986

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.2e-10  Score=74.55  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|++++||.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECG-MNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSC-CEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccC-hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999 99999999999999 9999999996

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.8e-10  Score=73.92  Aligned_cols=41  Identities=27%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             cccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          292 YKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       292 ~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      ++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+ |
T Consensus         4 ~~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECG-KSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSC-CCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCC-cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5678889999999999 99999999999999 9999999998 7

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=8.8e-10  Score=72.29  Aligned_cols=41  Identities=22%  Similarity=0.290  Sum_probs=38.8

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      |++.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         3 h~~~h~~~~~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECG-KIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTC-CCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCC-cccCCHHHHHHHHHHHCCCCCCCCC
Confidence            67889999999999999 99999999999999 9999999995

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=3.7e-10  Score=74.05  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=39.6

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++++||.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECG-KAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTT-EEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccC-cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999 99999999999999 9999999984

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.88  E-value=1.1e-09  Score=75.41  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             cccccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCee
Q 044007          288 AKNHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQ  330 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~  330 (378)
                      +..|++.|.++++|.|+.|+ +.|...+.|..|++ |+|++||.
T Consensus        12 l~~h~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           12 TEKPRSRSQSEQPATCPICY-AVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCHHHHTSSCCEECTTTC-CEESSHHHHHHHHHHHTTTSCCC
T ss_pred             hhhHHHhcCCCCCccCCCCC-cccCCHHHHHHHHHHhccCCCCC
Confidence            88899999999999999999 99999999999999 99999984

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=8.4e-10  Score=73.12  Aligned_cols=42  Identities=26%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccC-CCCeecc
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCG-DLKWQCS  332 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g-~kp~~C~  332 (378)
                      .|++.|.+++||.|+.|+ +.|.....|..|++ |++ ++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCE-KTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSC-CEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCC-CcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            478889999999999999 99999999999999 999 9999985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.3e-09  Score=71.50  Aligned_cols=41  Identities=29%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      .|++.|.+++||.|+.|+ +.|...+.|..|++ |++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECG-KAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSC-CEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCC-cccCchHHHHHHHhHhcCCCCCCC
Confidence            478899999999999999 99999999999999 999999987

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.1e-10  Score=89.32  Aligned_cols=58  Identities=16%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcC
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      .|.+.|.+++||.|+.|+ +.|.....|..|++ |++++||.|. |.+    ...|..|.++|.|
T Consensus        15 ~~~~~H~~~kpy~C~~C~-k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCD-SKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCCSCCCCSCEECSSSC-CEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCC-CEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            345667888899999999 89999999999988 9888999887 664    3455667788876

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.86  E-value=1.4e-09  Score=69.34  Aligned_cols=37  Identities=19%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |++++||.|. |++.|.+...|..|+++|++++||.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            6788899999 999999999999999999999988763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=6.4e-10  Score=82.40  Aligned_cols=60  Identities=18%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             HHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcC
Q 044007          315 SDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       315 ~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      ..|..|++ |++++||.|. |++.| ....|..|+ .|.+++||.|+.|++.|. ...|..|.++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             hHHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            35677888 9999999999 99999 589999999 899999999999999988 5999999875

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.85  E-value=1.7e-09  Score=77.63  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=24.0

Q ss_pred             ccCCCCeec--c-CCCccCChHHHHHHH-HHhcCCCCcccC
Q 044007          323 HCGDLKWQC--S-CGTTFSRKDKLMGHV-ALFVGHTPAVNV  359 (378)
Q Consensus       323 H~g~kp~~C--~-C~k~F~~~~~L~~H~-~~H~~~kpy~C~  359 (378)
                      ++|+|||+|  + |+++|.+++.|..|+ ++|+++|||.|.
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            456666666  3 666666666666665 566666666664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.1e-09  Score=71.24  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=38.0

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      .++.|+++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCG-KFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSC-CCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCC-CeeCChHHHHHHHHHhCCCCCCCCC
Confidence            35678899999999999 99999999999999 9999999996

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2.5e-09  Score=71.30  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=39.1

Q ss_pred             ccccccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCeecc-C
Q 044007          291 HYKRSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQCS-C  333 (378)
Q Consensus       291 H~~~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C  333 (378)
                      |.+.|.++++|.|.  .|+ +.|.....|..|++ |++++||.|. |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCG-WRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCC-CEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCC-CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55778899999998  899 99999999999999 9999999998 7

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2.2e-09  Score=70.70  Aligned_cols=41  Identities=27%  Similarity=0.475  Sum_probs=37.8

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +.+.|.++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~-k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCG-KSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTT-EEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCC-CccCChHHHHHHHHHhCCCCCCCCC
Confidence            45678899999999999 99999999999999 9999999985

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=4.2e-10  Score=86.15  Aligned_cols=54  Identities=9%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             Hh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          321 EK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       321 ~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      .+ |++++||.|. |++.|.+...|..|+++|++++||.|..|.    .+..|..|.|++
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~   72 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYA   72 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccc
Confidence            45 8999999999 999999999999999999999999997654    556666666653

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.2e-09  Score=68.33  Aligned_cols=38  Identities=29%  Similarity=0.520  Sum_probs=35.5

Q ss_pred             ccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      +.|.+++||.|+.|+ +.|.....|..|++ |++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECG-KSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSC-CEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCC-CCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467889999999999 99999999999999 999999998

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=3.6e-09  Score=69.02  Aligned_cols=39  Identities=23%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             ccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      +.|+++++|.|+.|+ +.|.....|..|++ |++++||.|+
T Consensus         3 ~~h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECD-CRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSC-CCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCC-CeeCChHHHHHHHHhhCCCCCccCC
Confidence            467889999999999 99999999999999 9999999985

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.5e-09  Score=65.85  Aligned_cols=33  Identities=15%  Similarity=0.371  Sum_probs=25.8

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      |++++||.|. |++.|.++..|..|+++|++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            7777788887 88888888888888888877765

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.68  E-value=7.3e-09  Score=64.88  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=19.0

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      |++ |++++||.|+ |++.|.+...|..|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            444 5555555555 55555555555555555554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.68  E-value=1.3e-08  Score=62.73  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=24.7

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      |++++||.|. |++.|.++..|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677777777 77777777777777777777664

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.66  E-value=1.5e-08  Score=62.54  Aligned_cols=33  Identities=18%  Similarity=0.441  Sum_probs=23.8

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      |++++||.|. |++.|.+...|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5667777777 77777777777777777777664

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.66  E-value=1.6e-08  Score=61.85  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=23.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCCcc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTPAV  357 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~  357 (378)
                      +||.|. |++.|.+...|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            467777 7777777777777777777777775

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.58  E-value=2.7e-08  Score=63.18  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             ccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          295 SHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       295 h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      |.+++||.|+.|+ +.|...+.|..|++ |++++||.+
T Consensus         1 h~~~k~~~C~~C~-k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCK-REFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTC-CEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCC-cccCCHHHHHHHHHHcCCCcccee
Confidence            4578999999999 99999999999999 999999976

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=3.8e-08  Score=61.95  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=23.4

Q ss_pred             ccCCCCeecc---CCCccCChHHHHHHHHHhcCCCCc
Q 044007          323 HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       323 H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                      |+|++||.|.   |++.|.+...|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4566677776   777777777777777777776665

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=4.5e-08  Score=70.29  Aligned_cols=40  Identities=25%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             cccccCCCceecCC--CCCccCCCHHHHHHHH-h-ccCCCCeecc
Q 044007          292 YKRSHCPKMYVCKR--CNRKQFSVLSDLRTHE-K-HCGDLKWQCS  332 (378)
Q Consensus       292 ~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~-~-H~g~kp~~C~  332 (378)
                      +....++|||+|..  |+ |.|...++|..|+ + |+++|||.|.
T Consensus        19 ~~~~sGEKPYkC~~~~Cg-KaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           19 PTRYSPYRPYRCVHQGCF-AAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             SSSSCSSCSCBCCSTTCC-CBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cccccCCCCeECCCCCcC-hhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            34678899999975  99 9999999999997 6 9999999994

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=7.1e-08  Score=59.75  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |.+++||.|. |++.|.+...|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            6677777777 7777777777777777777653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=5.9e-08  Score=60.59  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             ccccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      +.|.+++||.|+.|+ +.|.....|..|++ |++++|
T Consensus         2 ~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCE-KSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTT-EECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCC-CccCCHHHHHHHHHHHcCCCC
Confidence            567889999999999 99999999999999 999886

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=6.1e-08  Score=60.57  Aligned_cols=32  Identities=19%  Similarity=0.372  Sum_probs=24.0

Q ss_pred             ccCCCCeecc-CCCccCCh-HHHHHHHHHhcCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRK-DKLMGHVALFVGHT  354 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~-~~L~~H~~~H~~~k  354 (378)
                      |++++||.|+ |++.|.+. ..|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            6777777777 77777777 77777777777654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=6.9e-08  Score=59.91  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |++++||.|. |++.|.+...|..|+++|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            5566666666 666666666666666666654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=9.1e-08  Score=59.35  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |.+++||.|. |++.|.+...|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            6677777777 7777777777777777776653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=1.1e-07  Score=58.93  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=23.5

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |.+++||.|. |++.|.++..|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5677777777 7777777777777777777654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.47  E-value=1.1e-07  Score=59.39  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             ccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCC
Q 044007          291 HYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       291 H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      |++.|.+++||.|+.|+ +.|.....|..|++ |+|+
T Consensus         2 H~~~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCD-RSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTC-CCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCC-cccCcHHHHHHHHHHhccC
Confidence            77889999999999999 99999999999999 9875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.45  E-value=1.1e-07  Score=58.06  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCCeec
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQC  331 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C  331 (378)
                      +||.|+.|+ +.|...+.|..|++ |+|++||.+
T Consensus         1 kp~~C~~C~-k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECP-KRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSC-CCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCC-chhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999 99999999999999 999999863

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=6.9e-08  Score=60.53  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=19.4

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHH-HHHhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGH-VALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H-~~~H~~~  353 (378)
                      |++++||.|. |++.|.++..|..| +++|+++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            5666666666 66666666666666 5666553

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=60.05  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=18.5

Q ss_pred             ccCCCCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      ++|++||.|+   |+++|.+++.|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4556666663   666666666666666666554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=1.5e-07  Score=58.38  Aligned_cols=32  Identities=19%  Similarity=0.461  Sum_probs=23.8

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |.+++||.|. |++.|.+...|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            5667777777 7777777777777777777653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.43  E-value=1.4e-07  Score=57.83  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=30.6

Q ss_pred             ccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          295 SHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       295 h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      |.++++|.|+.|+ +.|...+.|..|++ |++++|
T Consensus         2 h~~~k~~~C~~C~-k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCL-KKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSC-CEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCc-chhCCHHHHHHHHHHHcCCCC
Confidence            6778999999999 99999999999999 999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.41  E-value=1.8e-07  Score=57.48  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=31.0

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      .|.+++||.|+.|+ +.|...+.|..|++ |++++|
T Consensus         1 ~H~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICL-SAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSC-CEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCC-cccCCHHHHHHHHHHcCCCCC
Confidence            36788999999999 99999999999999 999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.39  E-value=1e-07  Score=59.75  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                      +.|++||.|. |+++|.+++.|..|+       ||.|..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~~   34 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCSH   34 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTSTT
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECcC
Confidence            4567777777 777777777777776       666653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.37  E-value=1.6e-07  Score=62.70  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=25.9

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHH-HhcCCCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVA-LFVGHTP  355 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~kp  355 (378)
                      |+|++||.|. |++.|.++..|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            6788888888 8888888888888888 8887654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.34  E-value=1.1e-07  Score=63.47  Aligned_cols=30  Identities=10%  Similarity=-0.127  Sum_probs=27.7

Q ss_pred             HhcCCCCcccCcchhccCChhhhhhhhc-CC
Q 044007          349 LFVGHTPAVNVNSTNMYGQKGAATGTNA-IT  378 (378)
Q Consensus       349 ~H~~~kpy~C~~C~k~F~~~~~L~~H~r-v~  378 (378)
                      +|++++||.|.+|++.|..+..|.+|+| +|
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H   31 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSH   31 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSS
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhc
Confidence            5899999999999999999999999998 65

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.33  E-value=7.6e-08  Score=63.95  Aligned_cols=31  Identities=23%  Similarity=0.578  Sum_probs=17.5

Q ss_pred             ccCCCCeec--c-CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |+|++||.|  + |++.|.++..|..|+++|+|+
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            555555555  3 555555555555555555554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.30  E-value=2.3e-08  Score=60.68  Aligned_cols=30  Identities=23%  Similarity=0.431  Sum_probs=18.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCCc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                      +||.|. |++.|.+...|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            356666 666666666666666666666655

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=3.9e-07  Score=57.12  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             ccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCCCee
Q 044007          295 SHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDLKWQ  330 (378)
Q Consensus       295 h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~kp~~  330 (378)
                      |++++||.|+  .|+ +.|...+.|..|++ |++++||.
T Consensus         1 H~~~k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCG-QRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTC-CEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCC-cccCCHHHHHHHHHHhCCCCCCC
Confidence            4678999999  599 99999999999999 99999873

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.28  E-value=5.1e-07  Score=56.43  Aligned_cols=31  Identities=19%  Similarity=0.518  Sum_probs=18.1

Q ss_pred             ccCCCCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |++++||.|.   |++.|.++..|..|+++|+|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            4555566663   666666666666666666554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=8.1e-07  Score=63.74  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=26.0

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCcch
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNST  362 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~  362 (378)
                      |.+++||.|. |++.|.++..|..|+++|+++. ..|.+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            5667777777 7777777777777777777653 2344433

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.24  E-value=6.5e-07  Score=52.43  Aligned_cols=28  Identities=29%  Similarity=0.535  Sum_probs=18.3

Q ss_pred             CCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          326 DLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       326 ~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      ++||.|. |++.|.+...|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            3566666 666666666666666666654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=6.6e-07  Score=55.31  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.+++||.|+.|+ +.|...+.|..|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICE-RKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSC-CEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCC-CccCCHHHHHHHHHHhcCCC
Confidence            46778999999999 99999999999999 98874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=6.6e-07  Score=56.79  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             cccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .++++|||+|+.  |+ +.|..++.|..|++ |+|+.
T Consensus         3 ~~~gekp~~C~~~~C~-k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCD-YSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCC-CEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCC-CccCCHHHHHHHHHhcCCCC
Confidence            356789999986  99 99999999999999 99863

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=5.9e-07  Score=56.10  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=30.1

Q ss_pred             ccccCCCceecCCCCCccCCCHHHHHHH-Hh-ccCC
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVLSDLRTH-EK-HCGD  326 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~~~L~~H-~~-H~g~  326 (378)
                      +.|.+++||+|+.|+ +.|...+.|..| ++ |+++
T Consensus         2 ~~H~~~k~~~C~~C~-k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCH-YSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSS-CEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCC-cccCCHHHHHHHHHHHccCc
Confidence            568889999999999 999999999999 88 9875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=7.6e-07  Score=54.91  Aligned_cols=33  Identities=24%  Similarity=0.540  Sum_probs=30.1

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.+++||.|+.|+ +.|.....|..|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCS-YASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSS-CEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCC-cccCCHHHHHHHHHHccCCC
Confidence            46788999999999 99999999999999 99874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=8.6e-07  Score=54.75  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.+++||+|+.|+ +.|...+.|..|++ |++++
T Consensus         3 ~h~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCE-YATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSS-CEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCC-chhCCHHHHHHHHHHhccCC
Confidence            46788999999999 99999999999999 98874

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=6.3e-07  Score=55.77  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             ccccCCCceecCCCCCccCCCH-HHHHHHHh-ccCCC
Q 044007          293 KRSHCPKMYVCKRCNRKQFSVL-SDLRTHEK-HCGDL  327 (378)
Q Consensus       293 ~~h~~~k~~~C~~C~~k~F~~~-~~L~~H~~-H~g~k  327 (378)
                      +.|.+++||.|+.|+ +.|... +.|..|++ |++++
T Consensus         2 ~~h~~~k~~~C~~C~-k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCD-FYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSS-CEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCC-hhhccCHHHHHHHHHhcCCCC
Confidence            357788999999999 999999 99999999 98875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.19  E-value=7.7e-07  Score=51.86  Aligned_cols=27  Identities=33%  Similarity=0.666  Sum_probs=17.1

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +||.|. |++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            356666 666666666666666666654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.19  E-value=1.1e-06  Score=51.09  Aligned_cols=27  Identities=22%  Similarity=0.551  Sum_probs=18.1

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +||.|. |++.|.+...|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            356666 777777777777777666665

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.19  E-value=4.5e-07  Score=56.83  Aligned_cols=27  Identities=4%  Similarity=0.043  Sum_probs=25.0

Q ss_pred             hcCCCCcccCcchhccCChhhhhhhhc
Q 044007          350 FVGHTPAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       350 H~~~kpy~C~~C~k~F~~~~~L~~H~r  376 (378)
                      +.|+|||.|+.|||+|.+++.|++|+.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~p   29 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCC
Confidence            568999999999999999999999973

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.17  E-value=5.3e-07  Score=52.04  Aligned_cols=26  Identities=4%  Similarity=-0.225  Sum_probs=18.6

Q ss_pred             CCCcccCcchhccCChhhhhhhhcCC
Q 044007          353 HTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       353 ~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      ++||.|+.||+.|.+++.|.+|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            36777777777777777777777664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.17  E-value=1.1e-06  Score=51.07  Aligned_cols=28  Identities=25%  Similarity=0.622  Sum_probs=19.1

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      +||.|. |++.|.+...|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            466777 7777777777777777776653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.3e-06  Score=53.81  Aligned_cols=33  Identities=27%  Similarity=0.522  Sum_probs=29.8

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.++++|.|+.|+ +.|.....|..|++ |++++
T Consensus         3 ~h~~~~~~~C~~C~-k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCG-KKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTC-CBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCC-CCcCchHHHHHHHHHhcCCC
Confidence            46678999999999 99999999999999 99875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.14  E-value=1.4e-06  Score=50.97  Aligned_cols=29  Identities=17%  Similarity=0.324  Sum_probs=19.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHTP  355 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~kp  355 (378)
                      +||.|. |++.|.+...|..|+++|++++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            356677 77777777777777777766543

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.13  E-value=1.2e-06  Score=50.71  Aligned_cols=28  Identities=18%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      +||.|. |++.|.+...|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            466777 7777777777777777776653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.7e-06  Score=53.34  Aligned_cols=33  Identities=27%  Similarity=0.618  Sum_probs=29.4

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.+++||.|+.|+ +.|.....|..|++ |++++
T Consensus         3 ~~~~~k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCN-KVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTC-CEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCC-ceeCCHHHHHHHHHHhCCCC
Confidence            35678999999999 99999999999999 99874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.10  E-value=1.4e-07  Score=57.00  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCCe
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKW  329 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~  329 (378)
                      +||.|+.|+ +.|...+.|..|++ |++++||
T Consensus         1 kp~~C~~C~-k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACP-KRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSC-TTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCC-cccCCHHHHHHHHHHHccCCCC
Confidence            467777777 77777777777777 7777765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.5e-06  Score=50.23  Aligned_cols=25  Identities=32%  Similarity=0.680  Sum_probs=11.5

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      +||.|. |++.|.+...|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            344444 4444444444444444443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=1.9e-06  Score=49.43  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=12.1

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHh
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      +||.|. |++.|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            445555 555555555555555444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=2.3e-06  Score=49.01  Aligned_cols=27  Identities=22%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CCceecccccccccCHHHHHHHHHHhC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      +++|.|++||+.|.....|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999999884

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.33  E-value=5.3e-07  Score=52.99  Aligned_cols=27  Identities=26%  Similarity=0.584  Sum_probs=15.9

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +||.|. |++.|.+...|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            455666 666666666666666665554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.32  E-value=5.4e-07  Score=52.66  Aligned_cols=26  Identities=35%  Similarity=0.791  Sum_probs=15.1

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      ||.|. |++.|.+...|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            55555 555665555555565555554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.04  E-value=3.2e-06  Score=49.02  Aligned_cols=28  Identities=36%  Similarity=0.826  Sum_probs=26.1

Q ss_pred             CceecccccccccCHHHHHHHHHHhCCC
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      ++|.|++|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.04  E-value=1.6e-06  Score=49.89  Aligned_cols=24  Identities=13%  Similarity=0.384  Sum_probs=14.7

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHh
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      +||.|. |++.|.+...|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            556666 666666666666666555

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.04  E-value=2.7e-06  Score=52.97  Aligned_cols=33  Identities=30%  Similarity=0.552  Sum_probs=29.5

Q ss_pred             cccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCC
Q 044007          294 RSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       294 ~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .|.+++||.|.+  |+ +.|...+.|..|++ |+|++
T Consensus         2 ~~~~~k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCG-KVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCC-CEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCC-CccCCHHHHHHHHHhcCCCC
Confidence            467889999985  99 99999999999999 99875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.03  E-value=1.6e-06  Score=57.39  Aligned_cols=38  Identities=26%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             ccccccccCCCceecC--CCCCccCCCHHHHHHHHh-ccCCC
Q 044007          289 KNHYKRSHCPKMYVCK--RCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       289 ~~H~~~h~~~k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      ..|+..|.+++||.|+  .|+ +.|...+.|..|++ |+|++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~-k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCT-KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCC-CEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCC-CccCCHHHHHHHHHHccCCC
Confidence            3455678999999996  799 99999999999999 99875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.03  E-value=2.2e-06  Score=49.45  Aligned_cols=28  Identities=32%  Similarity=0.616  Sum_probs=25.5

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      +++|.|.+|++.|.....|..|++.|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3689999999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.28  E-value=6.9e-07  Score=50.85  Aligned_cols=25  Identities=12%  Similarity=0.029  Sum_probs=19.1

Q ss_pred             CCcccCcchhccCChhhhhhhhcCC
Q 044007          354 TPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       354 kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      +||.|++||+.|.+...|..|+|++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5777888888888888888887764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.01  E-value=3.6e-06  Score=49.07  Aligned_cols=29  Identities=31%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      ++||.|+.|+ +.|.....|..|++ |+|++
T Consensus         1 ~k~~~C~~C~-~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCG-RSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTC-CEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCC-cccCCHHHHHHHHHHhccCC
Confidence            4789999999 99999999999999 98874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.99  E-value=3.4e-06  Score=48.99  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=25.7

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +||.|+.|+ +.|...+.|..|++ |+|++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECP-KRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSS-CEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCC-chhCCHHHHHHHHHHhcCCC
Confidence            589999999 99999999999999 98874

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=2.8e-06  Score=48.53  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=12.4

Q ss_pred             eecc-CCCccCChHHHHHHHHHhcC
Q 044007          329 WQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      |.|. |++.|.+...|..|+++|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            4555 55555555555555555543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.98  E-value=2.5e-06  Score=48.68  Aligned_cols=27  Identities=26%  Similarity=0.552  Sum_probs=23.9

Q ss_pred             ceecccccccccCHHHHHHHHHHhCCC
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +|+|.+||+.|.....|..|++.|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            589999999999999999999999864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.95  E-value=3e-06  Score=49.64  Aligned_cols=26  Identities=31%  Similarity=0.837  Sum_probs=14.0

Q ss_pred             Ceecc-CCCccCChHHHHHH-HHHhcCC
Q 044007          328 KWQCS-CGTTFSRKDKLMGH-VALFVGH  353 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H-~~~H~~~  353 (378)
                      ||.|. |++.|.+...|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            45555 55555555555555 3555544

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.92  E-value=5.4e-06  Score=47.94  Aligned_cols=28  Identities=32%  Similarity=0.737  Sum_probs=25.9

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +||.|+.|+ +.|.....|..|++ |+|++
T Consensus         1 ~~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECG-KQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTS-CEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCC-CccCChhHHHHHHHHhcCCC
Confidence            589999999 99999999999999 99875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.92  E-value=6.5e-06  Score=58.96  Aligned_cols=32  Identities=34%  Similarity=0.512  Sum_probs=29.9

Q ss_pred             cCCCCceecccccccccCHHHHHHHHHHhCCC
Q 044007          200 LLAKYTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       200 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +..+++|+|.+|+|.|.++..|..|+++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            55678999999999999999999999999987

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.90  E-value=5.7e-06  Score=48.17  Aligned_cols=29  Identities=34%  Similarity=0.515  Sum_probs=26.2

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLK  328 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp  328 (378)
                      ++|.|+.|+ +.|...+.|..|++ |+++++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCE-FRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSS-CCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCC-CccCCHHHHHHHHHHHccCCC
Confidence            579999999 99999999999999 988764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.89  E-value=8.4e-06  Score=48.27  Aligned_cols=26  Identities=31%  Similarity=0.875  Sum_probs=14.6

Q ss_pred             ceecC--CCCCccCCCHHHHHHHHh-ccCC
Q 044007          300 MYVCK--RCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       300 ~~~C~--~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      ||.|+  .|+ +.|...+.|..|++ |+|+
T Consensus         2 p~~C~~~~C~-k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCG-KRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCC-CBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCC-cccCCHhHHHHHHHHhcCC
Confidence            45554  555 55555555555555 5554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.87  E-value=6.9e-06  Score=49.00  Aligned_cols=29  Identities=28%  Similarity=0.574  Sum_probs=26.7

Q ss_pred             CCceecc--cccccccCHHHHHHHHHHhCCC
Q 044007          203 KYTHYCQ--VCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       203 ~~~~~C~--~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +++|.|.  .||+.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3689999  8999999999999999999876

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.87  E-value=8.6e-06  Score=48.55  Aligned_cols=27  Identities=37%  Similarity=0.684  Sum_probs=14.8

Q ss_pred             CceecC--CCCCccCCCHHHHHHHHh-ccCC
Q 044007          299 KMYVCK--RCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       299 k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      +||.|+  .|+ +.|...+.|..|++ |+|+
T Consensus         2 k~~~C~~~~C~-k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCD-KAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCC-CCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCC-CccCCHHHHHHHHHHccCC
Confidence            455555  555 55555555555555 5544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.86  E-value=6.7e-06  Score=48.71  Aligned_cols=28  Identities=39%  Similarity=0.761  Sum_probs=25.9

Q ss_pred             Cceecc--cccccccCHHHHHHHHHHhCCC
Q 044007          204 YTHYCQ--VCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       204 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      ++|.|+  .||+.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            479998  9999999999999999999886

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.86  E-value=6.3e-06  Score=47.56  Aligned_cols=28  Identities=36%  Similarity=0.684  Sum_probs=25.5

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +||.|+.|+ +.|...+.|..|++ |++++
T Consensus         1 k~~~C~~C~-~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCD-KKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCC-CCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCC-cccCCHHHHHHHHHHhccCC
Confidence            589999999 99999999999999 98874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.07  E-value=2.1e-06  Score=48.76  Aligned_cols=26  Identities=35%  Similarity=0.705  Sum_probs=23.8

Q ss_pred             CceecccccccccCHHHHHHHHHHhC
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      ++|.|++||+.|.....|..|++.|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999874

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.05  E-value=2.3e-06  Score=49.84  Aligned_cols=28  Identities=36%  Similarity=0.619  Sum_probs=24.3

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +||.|+.|+ +.|...+.|..|++ |++++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCG-KAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            578999999 99999999999998 88764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.00  E-value=2.9e-06  Score=49.66  Aligned_cols=28  Identities=39%  Similarity=0.802  Sum_probs=24.5

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +||.|+.|+ +.|...+.|..|++ |++++
T Consensus         2 k~~~C~~C~-k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQ-RQFADPGALQRHVRIHTGEK   30 (30)
Confidence            689999999 99999999999998 88764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.73  E-value=1.4e-05  Score=46.66  Aligned_cols=28  Identities=43%  Similarity=0.814  Sum_probs=24.9

Q ss_pred             CceecCCCCCccCCCHHHHHHH-Hh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTH-EK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H-~~-H~g~k  327 (378)
                      +||.|+.|+ +.|...+.|..| ++ |+|++
T Consensus         1 k~~~C~~C~-k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCN-RAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTC-CBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccC-cccCChHHHHHHHHHHccCCC
Confidence            579999999 999999999999 67 98874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.67  E-value=2.2e-05  Score=45.28  Aligned_cols=27  Identities=26%  Similarity=0.614  Sum_probs=24.7

Q ss_pred             Cceecc--cccccccCHHHHHHHHHHhCC
Q 044007          204 YTHYCQ--VCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       204 ~~~~C~--~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      ++|.|.  .|++.|.....|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            468999  999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.54  E-value=4e-05  Score=54.43  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=26.8

Q ss_pred             CCCCccCCCHHHHHHHHh--ccCCC------Ceecc---CCCccCChHHHHHHHHH
Q 044007          305 RCNRKQFSVLSDLRTHEK--HCGDL------KWQCS---CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       305 ~C~~k~F~~~~~L~~H~~--H~g~k------p~~C~---C~k~F~~~~~L~~H~~~  349 (378)
                      .|+ +.|.+...|..|+.  |.|.+      +|.|.   |++.+.....|..|+++
T Consensus         8 ~C~-~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            8 ECP-ESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             TCC-CCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCC-CcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            366 66666666666653  65544      56664   66666666666666654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.41  E-value=7.7e-05  Score=42.83  Aligned_cols=26  Identities=38%  Similarity=0.875  Sum_probs=19.4

Q ss_pred             CceecC--CCCCccCCCHHHHHHHHh-ccC
Q 044007          299 KMYVCK--RCNRKQFSVLSDLRTHEK-HCG  325 (378)
Q Consensus       299 k~~~C~--~C~~k~F~~~~~L~~H~~-H~g  325 (378)
                      ++|.|+  .|+ +.|...+.|..|++ |+|
T Consensus         1 k~~~C~~~~C~-k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCG-RSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTC-EEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCc-CccCCHHHHHHHHHHhCC
Confidence            467777  888 77888878877777 754

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.0004  Score=49.18  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             eecc---CCCccCChHHHHHHH-HHhcCCC------CcccC--cchhccCChhhhhhhhcC
Q 044007          329 WQCS---CGTTFSRKDKLMGHV-ALFVGHT------PAVNV--NSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       329 ~~C~---C~k~F~~~~~L~~H~-~~H~~~k------py~C~--~C~k~F~~~~~L~~H~rv  377 (378)
                      |.|.   |++.|.+...|..|+ +.|.+.+      +|.|.  .|+..+.....|..|.|+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            4565   999999999999999 6898776      89996  899999999999999886

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.63  E-value=0.0047  Score=52.40  Aligned_cols=55  Identities=15%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCc
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                      ++..|+.|+ ..+ .+..|..|+. ....++-.|+ |+..|.. ..|..|..+++|+.+|
T Consensus       109 ~~v~C~~C~-~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQ-RPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             SEEECTTTC-CEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             eeeECCCCC-hHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            567788888 555 5667888886 7777778888 8877754 4667888888877654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.61  E-value=0.00047  Score=55.23  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=24.7

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      |+|++||.|. |++.|.+...|..|+++..
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            8888888888 8888888888888887774

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.41  E-value=0.00043  Score=56.15  Aligned_cols=72  Identities=11%  Similarity=0.060  Sum_probs=40.9

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh---ccCC-CCeeccC-------CCccCChHHHHHHHHHhcCCCCcccCcchhccCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK---HCGD-LKWQCSC-------GTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQ  367 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~---H~g~-kp~~C~C-------~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~  367 (378)
                      +++.|.+|+ ..|.+.+.+..|..   |... +.|.+.+       ++.|....    +...+.+.+.|.|.+|++.|.+
T Consensus        31 ~~~~C~~C~-v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           31 SDTQCKVCS-AVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             CSSEETTTT-EECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSS
T ss_pred             CCCcCcCCC-CEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCC
Confidence            456777777 77777777777763   5432 3343332       22222111    2223445566777777777777


Q ss_pred             hhhhhhhh
Q 044007          368 KGAATGTN  375 (378)
Q Consensus       368 ~~~L~~H~  375 (378)
                      ...|..|.
T Consensus       106 ~~~~~~H~  113 (127)
T 1zu1_A          106 PVVAESHY  113 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776664

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.97  E-value=0.0015  Score=52.36  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=26.4

Q ss_pred             cccccCCCceecCCCCCccCCCHHHHHHHHh-cc
Q 044007          292 YKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HC  324 (378)
Q Consensus       292 ~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~  324 (378)
                      -.-|+|+++|.|..|+ +.|.+.+.|..|++ ..
T Consensus        42 ded~tGekpfyC~~C~-K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           42 DPDLPGGGLHRCLACA-RYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             CSSSGGGGCSEETTTT-EECSSHHHHHHHTTCHH
T ss_pred             cccCCCCcceEcccCc-chhCCHHHHHHHHhhhh
Confidence            3467788999999999 99999999999876 53

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.86  E-value=0.0057  Score=51.85  Aligned_cols=139  Identities=15%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             CceecccccccccCHHHHHHHHHHhCCCCccccCCCCcccCCCCccccchhhhhcCCCcccCCCCCccccccccCCCccc
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALTNPLKKNGSSMGNNNESAIKIARKYSCPQEGCRWNKKHAKFQPLK  283 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~c~~~~~~~~~l~~h~~~~h~~~k~~~C~~C~k~F~~~~~~~k~~~  283 (378)
                      ..+.|.+|...|...               ..+ .|+..|-..- +.....     .....||.|...+......     
T Consensus        17 ~~~~C~IC~~~~~~p---------------v~~-~CgH~fC~~C-i~~~~~-----~~~~~CP~Cr~~~~~~~~~-----   69 (170)
T 3hcs_A           17 SKYECPICLMALREA---------------VQT-PCGHRFCKAC-IIKSIR-----DAGHKCPVDNEILLENQLF-----   69 (170)
T ss_dssp             GGGBCTTTCSBCSSE---------------EEC-TTSCEEEHHH-HHHHHH-----HHCSBCTTTCCBCCGGGCE-----
T ss_pred             CCCCCCCCChhhcCc---------------EEC-CCCCHHHHHH-HHHHHH-----hCCCCCCCCccCcchhhhh-----
Confidence            358899999888642               222 3666654321 111100     1234899998877553210     


Q ss_pred             chhhcccccccccCCCceec--CCCCCccCCCHHHHHHHHhccCCCCeecc-CCCccCChHHHHHHHHHhcCCCCcccCc
Q 044007          284 SMICAKNHYKRSHCPKMYVC--KRCNRKQFSVLSDLRTHEKHCGDLKWQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVN  360 (378)
Q Consensus       284 c~~c~~~H~~~h~~~k~~~C--~~C~~k~F~~~~~L~~H~~H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~  360 (378)
                          ....+......-...|  ..|+ ..+ ....|..|+....-++..|+ |+..+ .+..|..|+...-..++-.|+.
T Consensus        70 ----~~~~~~~~i~~l~v~C~n~GC~-~~~-~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~  142 (170)
T 3hcs_A           70 ----PDNFAKREILSLMVKCPNEGCL-HKM-ELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDN  142 (170)
T ss_dssp             ----ECHHHHHHHHTSEEECCSTTCC-CEE-EGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTT
T ss_pred             ----hhHHHHHHHhhcccCCCCCCCC-cee-cHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCC
Confidence                0001111222345667  5787 544 45678888776666789999 99988 5667899998777888999999


Q ss_pred             chhccCChhhhhhhhcC
Q 044007          361 STNMYGQKGAATGTNAI  377 (378)
Q Consensus       361 C~k~F~~~~~L~~H~rv  377 (378)
                      |+..|. ...|..|..+
T Consensus       143 C~~~~~-~~~l~~H~~~  158 (170)
T 3hcs_A          143 CAASMA-FEDKEIHDQN  158 (170)
T ss_dssp             TCCEEE-GGGHHHHHTT
T ss_pred             CCCccC-HHHHHhHHHh
Confidence            999874 5677888765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.39  E-value=0.012  Score=47.43  Aligned_cols=28  Identities=21%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             CCceecccccccccCHHHHHHHH--HHhCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHM--RAHGD  230 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~--~~H~~  230 (378)
                      .+++.|.+|+..|.+...+..|.  +.|..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~   59 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHAN   59 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHH
Confidence            35689999999999999999998  56653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.19  E-value=0.0075  Score=39.06  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=16.7

Q ss_pred             CCeecc-CCCccCChHHHHHHHH
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVA  348 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~  348 (378)
                      -+|.|+ |+..|.....|+.||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            457777 7777777777777776

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.37  E-value=0.031  Score=36.21  Aligned_cols=28  Identities=39%  Similarity=0.751  Sum_probs=24.0

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      .+|.|+.|+ ..|.....|+.||+ -.++.
T Consensus        11 ~~~~CPrCn-~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCN-AQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTC-CCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCccc-ccccchHHHHhhhhhcCcch
Confidence            679999999 99999999999998 55543

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=88.77  E-value=0.18  Score=36.55  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             eecc-CCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhh
Q 044007          329 WQCS-CGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGT  374 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H  374 (378)
                      |.|. ||-++ .+..|..|...-.+-..|.|-+|++.|.. ...+.|
T Consensus        11 F~C~~Cgd~l-KK~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           11 FTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEESSSCCEE-ETTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTC
T ss_pred             EEcCCCCCee-ecccchhHHhhCCCCCcEEecccCCeeCC-CCEeCE
Confidence            5555 66543 23355566544444445666666666653 444444

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.44  E-value=1.3  Score=26.63  Aligned_cols=19  Identities=26%  Similarity=0.707  Sum_probs=10.8

Q ss_pred             eecc-CCCccCChHHHHHHH
Q 044007          329 WQCS-CGTTFSRKDKLMGHV  347 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~  347 (378)
                      |.|+ |-+.|.+...|..|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHH
Confidence            5555 555555555555554

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.12  E-value=1.4  Score=26.45  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             ceecccccccccCHHHHHHHHHH-hC
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA-HG  229 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~-H~  229 (378)
                      .|.|++|-+.|.+...|..|... |.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            48999999999999999999854 43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d2dmda2	26	g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {H	4e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	6e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	8e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.003
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.003

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 3e-04
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAHGDE 231
           + C  C K F++   L MH + + D 
Sbjct: 9   YACSHCDKTFRQKQLLDMHFKRYHDP 34

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 4e-04
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 206 HYCQVCGKGFKRDANLRMHMRAH 228
           H C+VCGK F R   L+ HMR H
Sbjct: 2   HKCEVCGKCFSRKDKLKTHMRCH 24

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C+VC + F R  +L+ H R+H
Sbjct: 5   CEVCTRAFARQEHLKRHYRSH 25

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (80), Expect = 8e-04
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 208 CQVCGKGFKRDANLRMHMRAHGDE 231
           C  CGK F R + L  H R H  E
Sbjct: 10  CVECGKAFSRSSILVQHQRVHTGE 33

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C++C + F R  +L  H+R H
Sbjct: 6   CRICMRNFSRSDHLTTHIRTH 26

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 204 YTHYCQVCGKGFKRDANLRMHMRAH 228
             + C VCGK FK   +L  HM+ H
Sbjct: 29  RPYGCGVCGKKFKMKHHLVGHMKIH 53

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 208 CQVCGKGFKRDANLRMHMRAH 228
           C  C K F R  +L  H++ H
Sbjct: 5   CPECPKRFMRSDHLSKHIKTH 25

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.59
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.2
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.16
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.07
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.06
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.05
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.05
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.05
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.03
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.99
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.95
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.94
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.94
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.88
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.81
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.75
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.75
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.7
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.69
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.67
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.66
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.65
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.57
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.55
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.41
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.38
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.38
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.37
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.29
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.11
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.04
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.79
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.7
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.69
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.58
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.5
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.48
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.48
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.45
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.43
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.39
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.39
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.38
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.27
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.21
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.17
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.0
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.99
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.98
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.95
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.95
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.89
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.85
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.78
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.76
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.71
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.54
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.29
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.25
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.23
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.21
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.06
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.03
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.0
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.93
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.76
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.55
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.43
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.38
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.15
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.07
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.93
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.89
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.63
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.44
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.8
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.98
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.86
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.62
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.58
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.53
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.69
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	91.11
d1y0jb1	36	U-shaped transcription factor, different fingers {	90.68
d1y0jb1	36	U-shaped transcription factor, different fingers {	88.25
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.99
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	87.69
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.37
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.71
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.96
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	84.77
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	84.45
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	82.93
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.45
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	81.25
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.25
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	80.99
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.82

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-18  Score=115.42  Aligned_cols=53  Identities=23%  Similarity=0.410  Sum_probs=40.7

Q ss_pred             CCCeeccCCCccCChHHHHHHHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          326 DLKWQCSCGTTFSRKDKLMGHVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       326 ~kp~~C~C~k~F~~~~~L~~H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      ||||.|+||++|.++..|..|+++|+|++||.|.+||+.|.+.+.|.+|+|+|
T Consensus         1 EK~y~C~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECTTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCCCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            56777777777777777777777777777777777777777777777777765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=106.59  Aligned_cols=51  Identities=35%  Similarity=0.770  Sum_probs=49.4

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCCCCeecc-CCCccCChHHHHHHHHHh
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      ||||+|+ || +.|.....|..|++ |+|++||.|. ||++|.+...|..|+++|
T Consensus         1 EK~y~C~-Cg-k~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CG-KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TS-CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CC-CeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 99 99999999999999 9999999999 999999999999999988

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.5e-13  Score=82.79  Aligned_cols=36  Identities=31%  Similarity=0.581  Sum_probs=31.0

Q ss_pred             CCCCeecc-CCCccCChHHHHHHHH-HhcCCCCcccCc
Q 044007          325 GDLKWQCS-CGTTFSRKDKLMGHVA-LFVGHTPAVNVN  360 (378)
Q Consensus       325 g~kp~~C~-C~k~F~~~~~L~~H~~-~H~~~kpy~C~~  360 (378)
                      .+|||.|. ||++|.+++.|..|++ +|+|+|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            47899999 9999999999999975 799999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.3e-12  Score=81.78  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |++ |+++|||.|+ |||+|.+.+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            455 6666666666 666666666666666666654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8e-12  Score=74.98  Aligned_cols=31  Identities=35%  Similarity=0.803  Sum_probs=23.5

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |+|+|||.|. ||++|.+++.|..|+++|+||
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            6777777777 777777777777777777775

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.6e-12  Score=80.74  Aligned_cols=32  Identities=31%  Similarity=0.563  Sum_probs=17.7

Q ss_pred             HHh-ccCCCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          320 HEK-HCGDLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       320 H~~-H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      |.| |+|+|||.|. |+++|.+++.|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            345 5555555555 5555555555555555554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-11  Score=75.39  Aligned_cols=35  Identities=34%  Similarity=0.673  Sum_probs=32.3

Q ss_pred             CCCceecCCCCCccCCCHHHHHHHHh--ccCCCCeecc
Q 044007          297 CPKMYVCKRCNRKQFSVLSDLRTHEK--HCGDLKWQCS  332 (378)
Q Consensus       297 ~~k~~~C~~C~~k~F~~~~~L~~H~~--H~g~kp~~C~  332 (378)
                      .+|||+|+.|| |.|...++|.+|++  |+|+|||.|+
T Consensus         2 ~~Kpy~C~~Cg-k~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCG-KGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSC-CEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCC-CCcCChHHhhccCcCccCCCcCcCCc
Confidence            36899999999 99999999999975  9999999995

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.8e-12  Score=76.78  Aligned_cols=31  Identities=32%  Similarity=0.617  Sum_probs=26.1

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |+|+|||.|. ||++|.+++.|..|+++|+++
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            8888888888 888888888888888888765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-11  Score=74.46  Aligned_cols=30  Identities=10%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             HhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          349 LFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       349 ~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      +|+|+|||.|.+|||+|.+++.|.+|+|+|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~H   30 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH   30 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhcccc
Confidence            699999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=2.2e-11  Score=75.51  Aligned_cols=33  Identities=6%  Similarity=-0.036  Sum_probs=24.5

Q ss_pred             HHHHhcCCCCcccCcchhccCChhhhhhhhcCC
Q 044007          346 HVALFVGHTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       346 H~~~H~~~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      |.|+|+|||||.|++|+++|.+++.|++|+|+|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            567777777777777777777777777777754

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.6e-11  Score=73.46  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=16.4

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh-ccC
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCG  325 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g  325 (378)
                      +|+++|||+|+.|| +.|...+.|..|++ |++
T Consensus         2 ~HTgekPy~C~~C~-k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCD-KTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSS-CEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCC-CCcCCHhHHHHhCcccCC
Confidence            44555555555555 55555555555555 444

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.9e-11  Score=74.37  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=34.5

Q ss_pred             cccccccCCCceecCCCCCccCCCHHHHHHHHh-ccCC
Q 044007          290 NHYKRSHCPKMYVCKRCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       290 ~H~~~h~~~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      +|+++|+++|||+|+.|| |.|...++|..|++ |+||
T Consensus         2 rH~~~Ht~ekpy~C~~Cg-K~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECG-KSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSC-CBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCC-ceeeCHHHHHHhCccCCCC
Confidence            588999999999999999 99999999999999 9997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.6e-11  Score=74.64  Aligned_cols=31  Identities=19%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |+|+|||.|. |++.|.++..|..|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            6788888888 888888888888888888764

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=6.1e-11  Score=72.02  Aligned_cols=28  Identities=14%  Similarity=0.135  Sum_probs=14.0

Q ss_pred             hcCCCCcccCcchhccCChhhhhhhhcC
Q 044007          350 FVGHTPAVNVNSTNMYGQKGAATGTNAI  377 (378)
Q Consensus       350 H~~~kpy~C~~C~k~F~~~~~L~~H~rv  377 (378)
                      |+|+|||+|.+|+|.|+++++|++|+|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc
Confidence            3445555555555555555555555544

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.99  E-value=1.1e-10  Score=67.88  Aligned_cols=28  Identities=21%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |||.|+ |+++|.+++.|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            567777 7777777777777777777764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.1e-10  Score=67.08  Aligned_cols=27  Identities=37%  Similarity=0.733  Sum_probs=20.9

Q ss_pred             CCCeecc-CCCccCChHHHHHHHHHhcC
Q 044007          326 DLKWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       326 ~kp~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      ||||.|+ |+++|.+++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5777777 77777777777777777776

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-10  Score=66.69  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=21.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |||.|. |+++|.+++.|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            577777 7777777777777777777765

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.8e-11  Score=72.90  Aligned_cols=27  Identities=22%  Similarity=0.656  Sum_probs=20.0

Q ss_pred             ccCCCCeecc-CCCccCChHHHHHHHHH
Q 044007          323 HCGDLKWQCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       323 H~g~kp~~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      |+|||||.|+ |+++|.+++.|..|++.
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHccc
Confidence            7777777777 77777777777777643

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-10  Score=70.03  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             eecc---CCCccCChHHHHHHHHHhcCCCCcccC
Q 044007          329 WQCS---CGTTFSRKDKLMGHVALFVGHTPAVNV  359 (378)
Q Consensus       329 ~~C~---C~k~F~~~~~L~~H~~~H~~~kpy~C~  359 (378)
                      |.|+   |+++|.+++.|.+|+++|+|+|||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            6775   899999999999999999999999886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=1e-10  Score=76.28  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=17.7

Q ss_pred             HHhccCCCCeec--c-CCCccCChHHHHHHHHHhcCCC
Q 044007          320 HEKHCGDLKWQC--S-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       320 H~~H~g~kp~~C--~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |++|+|++||.|  + |+++|.+++.|..|+++|+|+|
T Consensus        10 h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhhccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            333555555555  2 5555555555555555555543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=3.9e-10  Score=64.74  Aligned_cols=28  Identities=29%  Similarity=0.715  Sum_probs=26.7

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      ++||+|++|+|.|.++++|..||++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.7e-10  Score=68.36  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=14.4

Q ss_pred             cccCCCceecCCCCCccCCCHHHHHHHHh
Q 044007          294 RSHCPKMYVCKRCNRKQFSVLSDLRTHEK  322 (378)
Q Consensus       294 ~h~~~k~~~C~~C~~k~F~~~~~L~~H~~  322 (378)
                      +|+|+|||+|+.|+ +.|..+++|+.|++
T Consensus         2 ~HTgekP~~C~~C~-k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           2 THSGEKPYECYICH-ARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCSCCCSEECTTTC-CEESCHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCc-ccccchHHHHHHcc
Confidence            44555555555555 55555555555543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.81  E-value=1.1e-09  Score=63.58  Aligned_cols=28  Identities=25%  Similarity=0.704  Sum_probs=26.8

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      |||.|++|+ +.|...+.|.+|++ |+|||
T Consensus         1 kp~~C~~C~-k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCT-RAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTC-CCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCC-CCCCCchHcccccCcccCCC
Confidence            699999999 99999999999999 99986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.9e-09  Score=60.28  Aligned_cols=25  Identities=28%  Similarity=0.740  Sum_probs=14.7

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      |||+|. |||+|.+++.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            455665 6666666666666666553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2e-09  Score=62.29  Aligned_cols=28  Identities=32%  Similarity=0.581  Sum_probs=26.7

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      |||.|++|| |.|.+++.|.+|++ |+|+|
T Consensus         1 Kpy~C~~C~-k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECP-KRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTT-CCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCC-CeecchHHhhhhcCccCCcC
Confidence            699999999 99999999999999 99986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.4e-09  Score=62.35  Aligned_cols=28  Identities=32%  Similarity=0.731  Sum_probs=19.9

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcCCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      |||.|+   |+++|.+.+.|..|+++|+|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            567773   7777777777777777777764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.4e-09  Score=61.34  Aligned_cols=27  Identities=37%  Similarity=0.717  Sum_probs=20.3

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |||.|+   |+++|.+++.|..|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            577774   777777777777777777775

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.3e-09  Score=64.19  Aligned_cols=31  Identities=29%  Similarity=0.745  Sum_probs=28.9

Q ss_pred             eecCC--CCCccCCCHHHHHHHHh-ccCCCCeecc
Q 044007          301 YVCKR--CNRKQFSVLSDLRTHEK-HCGDLKWQCS  332 (378)
Q Consensus       301 ~~C~~--C~~k~F~~~~~L~~H~~-H~g~kp~~C~  332 (378)
                      |.|+.  |+ +.|.+++.|++|++ |+|++||.|+
T Consensus         2 f~C~~~~C~-k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACG-KSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTC-CEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCC-CeeCChhHhccccCeeCCCCCEeCC
Confidence            78876  99 99999999999999 9999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.5e-09  Score=60.50  Aligned_cols=27  Identities=26%  Similarity=0.618  Sum_probs=16.9

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      |||.|+   |+++|.+++.|..|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            456663   666666666666666666664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.7e-09  Score=58.63  Aligned_cols=26  Identities=35%  Similarity=0.629  Sum_probs=24.7

Q ss_pred             CceecccccccccCHHHHHHHHHHhC
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      +||+|.+|||.|...++|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999984

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=4e-09  Score=68.51  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             cccccccccCCCceecCC--CCCccCCCHHHHHHHHh-ccCCC
Q 044007          288 AKNHYKRSHCPKMYVCKR--CNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       288 ~~~H~~~h~~~k~~~C~~--C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      +..|+ .|.+++||+|++  |+ +.|...+.|+.|++ |+|+|
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~-k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCT-KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCC-CEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCC-ccccCchHHHhhcccccCCC
Confidence            55566 499999999987  99 99999999999999 99986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.7e-08  Score=58.74  Aligned_cols=28  Identities=39%  Similarity=0.793  Sum_probs=26.6

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhCCC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +||.|++  |||.|.+.++|++|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899999  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-08  Score=59.03  Aligned_cols=28  Identities=43%  Similarity=0.791  Sum_probs=26.3

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhCCC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +||+|++  |||.|.+.++|++|||+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899988  999999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.8e-08  Score=52.77  Aligned_cols=26  Identities=50%  Similarity=1.016  Sum_probs=24.4

Q ss_pred             ceecccccccccCHHHHHHHHHHhCC
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      |++|++|+|-|+++..|++|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            57899999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3.5e-08  Score=56.82  Aligned_cols=26  Identities=31%  Similarity=0.751  Sum_probs=18.0

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~  352 (378)
                      |||.|+   |+++|.+.+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            467774   77777777777777777765

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.9e-08  Score=51.82  Aligned_cols=25  Identities=48%  Similarity=0.906  Sum_probs=16.4

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      |++|+ |++.|++++.|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            45666 66666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9.7e-08  Score=55.96  Aligned_cols=28  Identities=29%  Similarity=0.820  Sum_probs=25.8

Q ss_pred             CceecC--CCCCccCCCHHHHHHHHh-ccCCC
Q 044007          299 KMYVCK--RCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       299 k~~~C~--~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      |||.|+  .|+ |.|...++|++|++ |+|+|
T Consensus         1 kpf~C~~~~C~-k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCG-KRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCC-CBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCC-cCcCChhHhhhhcCcccccC
Confidence            689995  699 99999999999999 99986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=9.5e-08  Score=56.31  Aligned_cols=27  Identities=26%  Similarity=0.591  Sum_probs=18.0

Q ss_pred             CCCeecc---CCCccCChHHHHHHHHHhcC
Q 044007          326 DLKWQCS---CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       326 ~kp~~C~---C~k~F~~~~~L~~H~~~H~~  352 (378)
                      |+||.|+   |+++|++.+.|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            4666664   77777777777777776654

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.5e-08  Score=57.72  Aligned_cols=26  Identities=4%  Similarity=-0.011  Sum_probs=24.5

Q ss_pred             CCCcccCc--chhccCChhhhhhhhcCC
Q 044007          353 HTPAVNVN--STNMYGQKGAATGTNAIT  378 (378)
Q Consensus       353 ~kpy~C~~--C~k~F~~~~~L~~H~rv~  378 (378)
                      ||||.|++  |+|+|++.+.|++|+|+|
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~H   28 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhc
Confidence            69999988  999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=6.2e-08  Score=53.16  Aligned_cols=26  Identities=8%  Similarity=0.074  Sum_probs=17.0

Q ss_pred             CCCcccCcchhccCChhhhhhhhcCC
Q 044007          353 HTPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       353 ~kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      ||||.|++||+.|.+....++|.+||
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            46666666666666666666666654

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-07  Score=54.15  Aligned_cols=25  Identities=20%  Similarity=0.586  Sum_probs=14.9

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhc
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~  351 (378)
                      |||.|+   |||+|++.++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            456664   6666666666666666653

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.5e-07  Score=54.06  Aligned_cols=27  Identities=37%  Similarity=0.720  Sum_probs=25.2

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhCC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  230 (378)
                      +||.|++  |+|.|.+.++|++|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899988  99999999999999999976

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.9e-07  Score=51.73  Aligned_cols=26  Identities=31%  Similarity=0.668  Sum_probs=24.3

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~  229 (378)
                      +||.|+.  |||.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899988  9999999999999999995

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.3e-07  Score=50.28  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCCCc
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHTPA  356 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~kpy  356 (378)
                      ...|+ |||.|.....|.+|...|+|||||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34566 666666666666666666666665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.4e-06  Score=47.74  Aligned_cols=26  Identities=27%  Similarity=0.740  Sum_probs=21.6

Q ss_pred             CCCeecc-CCCccCChHHHHHHHHHhc
Q 044007          326 DLKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       326 ~kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      |+||.|. ||+.|.+++...+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            5788888 8888888888888888884

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.2e-06  Score=47.52  Aligned_cols=31  Identities=29%  Similarity=0.593  Sum_probs=28.2

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh-ccCCCCee
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK-HCGDLKWQ  330 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~-H~g~kp~~  330 (378)
                      |...|+.|| |.|.....|.+|.. |+|||||.
T Consensus         4 k~~~ce~cg-k~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICG-KIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTT-EEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHH-HHHHHHHHHHhhhcccCCCCCCC
Confidence            567899999 99999999999998 99999983

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7e-06  Score=45.52  Aligned_cols=29  Identities=34%  Similarity=0.717  Sum_probs=27.2

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      ++||.|++|+..|+++..+.-|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=6.2e-06  Score=45.73  Aligned_cols=28  Identities=36%  Similarity=0.746  Sum_probs=21.3

Q ss_pred             CCCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          326 DLKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       326 ~kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +|||.|+ |+..|++++-+..|+|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            5777888 888888888777788777663

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.6e-06  Score=44.88  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=15.4

Q ss_pred             CCCeecc-CCCccCChHHHHHHHHHhcC
Q 044007          326 DLKWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       326 ~kp~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      ++||+|. |...-..++.|..|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3555555 55555555555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=9.5e-06  Score=43.74  Aligned_cols=25  Identities=32%  Similarity=0.705  Sum_probs=16.3

Q ss_pred             eecc-CCCccCChHHHHHHHHHhcCC
Q 044007          329 WQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +.|. |||+|...+.|++|+.+|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            4566 666666666666666666664

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.4e-05  Score=43.30  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=25.8

Q ss_pred             CCceecCCCCCccCCCHHHHHHHHh-ccCC
Q 044007          298 PKMYVCKRCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       298 ~k~~~C~~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      ++||+|..|. ..-...+.|..|+| |+|+
T Consensus         1 erpfkcqlcs-y~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICP-YASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSS-CEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecc-cccCCchheEEeeecccCc
Confidence            4799999999 99999999999999 9984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.7e-05  Score=42.72  Aligned_cols=27  Identities=37%  Similarity=0.749  Sum_probs=24.8

Q ss_pred             ceecccccccccCHHHHHHHHHHhCCC
Q 044007          205 THYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      .+.|.+|||.|...+.|++|...|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=3.9e-05  Score=40.69  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=15.9

Q ss_pred             ecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          330 QCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       330 ~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      .|+ |.++|.++.-|+.|-|.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            366 6666666666666666666654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.1e-05  Score=43.42  Aligned_cols=25  Identities=8%  Similarity=-0.029  Sum_probs=13.0

Q ss_pred             CCcccCcchhccCChhhhhhhhcCC
Q 044007          354 TPAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       354 kpy~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      |||+|..|+..-...++|++|.|||
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            4555555555555555555555543

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4e-05  Score=41.70  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=16.4

Q ss_pred             eecCCCCCccCCCHHHHHHHHh-ccCCC
Q 044007          301 YVCKRCNRKQFSVLSDLRTHEK-HCGDL  327 (378)
Q Consensus       301 ~~C~~C~~k~F~~~~~L~~H~~-H~g~k  327 (378)
                      |.|+.|| ......+.|+.|+| |++++
T Consensus         2 YvC~~Cg-~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECG-IRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTC-CBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccC-cccCCHHHHHHHHHHhcCCC
Confidence            5666666 66666666666666 66653

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=4.8e-05  Score=40.34  Aligned_cols=25  Identities=36%  Similarity=0.632  Sum_probs=24.0

Q ss_pred             ecccccccccCHHHHHHHHHHhCCC
Q 044007          207 YCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       207 ~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +|+.|.|.|.++..|+.|-|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999999997

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.43  E-value=2.5e-05  Score=40.81  Aligned_cols=23  Identities=9%  Similarity=-0.022  Sum_probs=16.9

Q ss_pred             cccCcchhccCChhhhhhhhcCC
Q 044007          356 AVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      |+|..|..+|..++.|.+|+|||
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            66777777777777777777765

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=5.6e-05  Score=41.82  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=8.4

Q ss_pred             CCCccCChHHHHHHHHH
Q 044007          333 CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       333 C~k~F~~~~~L~~H~~~  349 (378)
                      |+|+++..++|+.|++.
T Consensus        10 C~K~YtdPSSLRKH~k~   26 (29)
T d2glia5          10 CTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHh
Confidence            44555555555555443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=6.4e-05  Score=40.31  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhc
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      +||+|. |...-...++|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            688888 8888888888888888875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.1e-05  Score=40.69  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=24.8

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcCCC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVGHT  354 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~~k  354 (378)
                      .|.|+ ||....-.+-|+.|+|.|++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHHhcCCC
Confidence            38899 9999999999999999999874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00014  Score=39.49  Aligned_cols=29  Identities=38%  Similarity=0.770  Sum_probs=26.7

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +..|.|..|...|+++-.|+.||..|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45799999999999999999999999985

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.21  E-value=0.00012  Score=39.67  Aligned_cols=24  Identities=29%  Similarity=0.683  Sum_probs=17.7

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHh
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H  350 (378)
                      .||+|+   |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            467775   777777777777777776

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=39.98  Aligned_cols=27  Identities=37%  Similarity=0.640  Sum_probs=17.7

Q ss_pred             CceecCCCCCccCCCHHHHHHHHh--ccCC
Q 044007          299 KMYVCKRCNRKQFSVLSDLRTHEK--HCGD  326 (378)
Q Consensus       299 k~~~C~~C~~k~F~~~~~L~~H~~--H~g~  326 (378)
                      |||.|..|. .+....++|+.|++  |..+
T Consensus         1 kpy~cqyc~-yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCE-FRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSS-CCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccc-cccccchhhhhhhhcccccC
Confidence            467777777 66666677777766  5544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00016  Score=39.98  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=24.2

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhCC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~  230 (378)
                      +||.|.+  |+|.+...+.|+.||+.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899988  99999999999999998764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00011  Score=40.96  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             CCeecc---CCCccCChHHHHHHH-HHhcCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHV-ALFVGH  353 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~-~~H~~~  353 (378)
                      |||.|+   |.|+|+..+.-..|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            577775   788888777777776 777643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.99  E-value=0.00024  Score=42.21  Aligned_cols=27  Identities=26%  Similarity=0.568  Sum_probs=18.6

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +.|.|. |++.|.+...|-.||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            457777 777777777777777777544

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.98  E-value=0.0002  Score=37.32  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=14.0

Q ss_pred             eecc-CCCccCChHHHHHHHHHh
Q 044007          329 WQCS-CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~H  350 (378)
                      |+|- |.++|..++.|.+|+|+|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            4566 666666666666666665

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00014  Score=43.55  Aligned_cols=22  Identities=27%  Similarity=0.718  Sum_probs=12.0

Q ss_pred             CCCCeecc-CCCccCChHHHHHH
Q 044007          325 GDLKWQCS-CGTTFSRKDKLMGH  346 (378)
Q Consensus       325 g~kp~~C~-C~k~F~~~~~L~~H  346 (378)
                      |-|||.|. |+|.|...+++.+|
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHh
Confidence            44555555 55555555555554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.95  E-value=0.0002  Score=39.94  Aligned_cols=25  Identities=32%  Similarity=0.873  Sum_probs=18.7

Q ss_pred             Ceecc-CCCccCChHHHHHHH-HHhcC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHV-ALFVG  352 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~-~~H~~  352 (378)
                      ||.|. |++.|.+++.|.+|. ++|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            67777 888888888777776 56665

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.89  E-value=0.00029  Score=38.30  Aligned_cols=27  Identities=22%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +||.|.   |.|.|.+...|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            578885   888888888888888888875

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00033  Score=41.86  Aligned_cols=25  Identities=8%  Similarity=-0.028  Sum_probs=17.9

Q ss_pred             cCCCCcccCcchhccCChhhhhhhh
Q 044007          351 VGHTPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       351 ~~~kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                      +|-|||.|.+|+|+|--+.++.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            4667777777777777777777764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00042  Score=37.57  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=21.6

Q ss_pred             ceecccccccccCHHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      ||.|..|...|+++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68999999999999999999975

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0004  Score=36.12  Aligned_cols=20  Identities=35%  Similarity=0.881  Sum_probs=13.3

Q ss_pred             Ceecc-CCCccCChHHHHHHH
Q 044007          328 KWQCS-CGTTFSRKDKLMGHV  347 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~  347 (378)
                      ||+|. |...|.++..|..||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            56666 666666666666665

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.71  E-value=0.00057  Score=40.55  Aligned_cols=29  Identities=24%  Similarity=0.523  Sum_probs=26.6

Q ss_pred             CCceecccccccccCHHHHHHHHHHhCCC
Q 044007          203 KYTHYCQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       203 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      .+.|+|.+|++.|.+-..|=-||+.|..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcch
Confidence            46799999999999999999999999766

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00031  Score=38.15  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=13.9

Q ss_pred             CcccCcchhccCChhhhhhhhc
Q 044007          355 PAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~r  376 (378)
                      ||.|..|.-.|..+++|.+|+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            5666666666666666666653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.29  E-value=0.0017  Score=35.00  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=22.3

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHh
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAH  228 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H  228 (378)
                      .||+|+.  |++.|...+.|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4789965  999999999999998877

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=37.97  Aligned_cols=20  Identities=20%  Similarity=0.223  Sum_probs=15.8

Q ss_pred             CCccCChHHHHHHHHHhcCC
Q 044007          334 GTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       334 ~k~F~~~~~L~~H~~~H~~~  353 (378)
                      ++.|..+..|..|+|+|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            35588888888888888876

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.23  E-value=0.0011  Score=35.97  Aligned_cols=28  Identities=32%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             Cceeccc--ccccccCHHHHHHHHHHhCCC
Q 044007          204 YTHYCQV--CGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       204 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      +||.|..  |.|+|.+...|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677854  999999999999999999875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0021  Score=34.71  Aligned_cols=27  Identities=33%  Similarity=0.614  Sum_probs=17.6

Q ss_pred             CCeecc-CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS-CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~-C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      .-|.|. |...|.++-.|..||-.|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            446666 666666666666666666664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0021  Score=37.75  Aligned_cols=27  Identities=30%  Similarity=0.614  Sum_probs=23.5

Q ss_pred             CCCCeecc---CCCccCChHHHHHHHHHhc
Q 044007          325 GDLKWQCS---CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       325 g~kp~~C~---C~k~F~~~~~L~~H~~~H~  351 (378)
                      .+|||.|.   |+.+|.+.+.|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47899994   9999999999999998885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0011  Score=35.26  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=15.8

Q ss_pred             CcccCcchhccCChhhhhhhhc
Q 044007          355 PAVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~r  376 (378)
                      ||.|..|||.|-++.+|-.|.+
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6777777777777777777653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0023  Score=34.76  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             CceecccccccccCHHHHHHHHHHhCC
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      +||.|..|.......++|+.|+++-++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            589999999999999999999976443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.00  E-value=0.0021  Score=35.70  Aligned_cols=26  Identities=35%  Similarity=0.695  Sum_probs=23.4

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh--ccCC
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK--HCGD  326 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~--H~g~  326 (378)
                      ||.|.+|+ +.|+++..|.+|..  |.|.
T Consensus         1 Pf~C~~C~-R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCN-RAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTC-CEESSHHHHHHHHTTTSCCS
T ss_pred             Cccccccc-chhhHHHHHHHHHHHHhcCc
Confidence            79999999 99999999999987  8763

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0012  Score=34.30  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=20.7

Q ss_pred             CCcccCcchhccCChhhhhhhh
Q 044007          354 TPAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       354 kpy~C~~C~k~F~~~~~L~~H~  375 (378)
                      .||+|..|.+.|-++..|..|+
T Consensus         1 mpykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHH
Confidence            4899999999999999999997

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0036  Score=33.93  Aligned_cols=21  Identities=19%  Similarity=0.562  Sum_probs=10.9

Q ss_pred             Ceecc-CCCccCChHHHHHHHH
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVA  348 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~  348 (378)
                      ||+|. |...-++.++|..|++
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHH
Confidence            45555 5555555555555553

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.55  E-value=0.0043  Score=34.15  Aligned_cols=27  Identities=30%  Similarity=0.747  Sum_probs=23.8

Q ss_pred             CCeecc---CCCccCChHHHHHHHHHhcCC
Q 044007          327 LKWQCS---CGTTFSRKDKLMGHVALFVGH  353 (378)
Q Consensus       327 kp~~C~---C~k~F~~~~~L~~H~~~H~~~  353 (378)
                      +.|.|.   |+..|...+.|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            568886   999999999999999999986

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0021  Score=36.50  Aligned_cols=21  Identities=5%  Similarity=0.099  Sum_probs=16.8

Q ss_pred             CcccCcchhccCChhhhhhhh
Q 044007          355 PAVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~  375 (378)
                      .|.|..|||.|+++.++.+|.
T Consensus         4 afvcskcgktftrrntm~rha   24 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHA   24 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHh
Confidence            478888888888888888874

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0023  Score=35.56  Aligned_cols=26  Identities=42%  Similarity=0.843  Sum_probs=19.7

Q ss_pred             CceecCC--CCCccCCCHHHHHHHH-h-ccC
Q 044007          299 KMYVCKR--CNRKQFSVLSDLRTHE-K-HCG  325 (378)
Q Consensus       299 k~~~C~~--C~~k~F~~~~~L~~H~-~-H~g  325 (378)
                      |||.|+.  |. |.|+..++--.|+ | |..
T Consensus         1 kPY~C~~~gC~-KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCS-KAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCC-CEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChh-hhhcchhhhhhhccccccC
Confidence            5788865  88 8888888888886 5 754

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0067  Score=32.38  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=17.3

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhc
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~  351 (378)
                      |-+|+ |.++.+++..|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            45677 7777777777777777774

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.07  E-value=0.0021  Score=33.47  Aligned_cols=20  Identities=10%  Similarity=-0.092  Sum_probs=10.6

Q ss_pred             cccCcchhccCChhhhhhhh
Q 044007          356 AVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~  375 (378)
                      |+|++|-|.|+++.++..|-
T Consensus         2 ypcp~cfkeftrkdnm~ahv   21 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHV   21 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEE
Confidence            45555555555555555553

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0086  Score=32.40  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             CceecccccccccCHHHHHHHHHHh
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAH  228 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H  228 (378)
                      +||+|..|...-++.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            4799999999999999999999653

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0036  Score=33.45  Aligned_cols=24  Identities=17%  Similarity=0.097  Sum_probs=22.5

Q ss_pred             CcccCcchhccCChhhhhhhhcCC
Q 044007          355 PAVNVNSTNMYGQKGAATGTNAIT  378 (378)
Q Consensus       355 py~C~~C~k~F~~~~~L~~H~rv~  378 (378)
                      |-+|++|..+..++..|+-|.|||
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            668999999999999999999986

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0098  Score=31.50  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             ceecccccccccCHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMR  226 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~  226 (378)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999999964

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.44  E-value=0.014  Score=30.24  Aligned_cols=21  Identities=38%  Similarity=0.928  Sum_probs=18.5

Q ss_pred             eecc-CCCccCChHHHHHHHHH
Q 044007          329 WQCS-CGTTFSRKDKLMGHVAL  349 (378)
Q Consensus       329 ~~C~-C~k~F~~~~~L~~H~~~  349 (378)
                      |.|+ |-+.|++++++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899 99999999999999865

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.02  Score=30.36  Aligned_cols=21  Identities=29%  Similarity=0.646  Sum_probs=14.6

Q ss_pred             eecCCCCCccCCCHHHHHHHHh
Q 044007          301 YVCKRCNRKQFSVLSDLRTHEK  322 (378)
Q Consensus       301 ~~C~~C~~k~F~~~~~L~~H~~  322 (378)
                      |.|+.|+ -...++++|+.|++
T Consensus         3 ~qcphc~-tiiarksdlrvhlr   23 (28)
T d2ct1a1           3 FHCPHCD-TVIARKSDLGVHLR   23 (28)
T ss_dssp             EECSSSS-CEESSHHHHHHHHH
T ss_pred             ccCCcch-hheeehhhhhHHhh
Confidence            5677777 66677777777766

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.049  Score=28.84  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=21.3

Q ss_pred             ceecccccccccCHHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      .|.|+.|+....+++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            48999999999999999999975

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.033  Score=34.20  Aligned_cols=27  Identities=37%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             CceecccccccccCHHHHHHHHHHhCC
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMRAHGD  230 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~~H~~  230 (378)
                      ..|.|-.|||.|.....|+.|-..|.-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            357899999999999999999988864

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.044  Score=30.93  Aligned_cols=25  Identities=36%  Similarity=0.854  Sum_probs=17.4

Q ss_pred             Ceecc-CCCccCChHHHHHHHHHhcC
Q 044007          328 KWQCS-CGTTFSRKDKLMGHVALFVG  352 (378)
Q Consensus       328 p~~C~-C~k~F~~~~~L~~H~~~H~~  352 (378)
                      .|.|. |||.|.++..+.+|-.-.+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46777 77777777777777655544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.025  Score=32.29  Aligned_cols=24  Identities=38%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             cccccccccCHHHHHHHHHHhCCC
Q 044007          208 CQVCGKGFKRDANLRMHMRAHGDE  231 (378)
Q Consensus       208 C~~C~k~F~~~~~L~~H~~~H~~~  231 (378)
                      |.-=++.|.....|..|||.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            444467899999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.051  Score=31.71  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=24.9

Q ss_pred             CCCceec--ccccccccCHHHHHHHHHHhC
Q 044007          202 AKYTHYC--QVCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       202 ~~~~~~C--~~C~k~F~~~~~L~~H~~~H~  229 (378)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3789999  669999999999999998885

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.69  E-value=0.065  Score=28.14  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=15.1

Q ss_pred             eecc---CCCccCChHHHHHHHHHhc
Q 044007          329 WQCS---CGTTFSRKDKLMGHVALFV  351 (378)
Q Consensus       329 ~~C~---C~k~F~~~~~L~~H~~~H~  351 (378)
                      |.|.   |+++|+....|+.|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            4553   7777777777777766664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.062  Score=32.95  Aligned_cols=24  Identities=38%  Similarity=0.686  Sum_probs=19.5

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh-cc
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK-HC  324 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~-H~  324 (378)
                      -|.|..|+ |.|.....|+.|.. |-
T Consensus         6 l~pCG~Cg-K~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCG-KVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTC-CCCSCHHHHHHHHHHHT
T ss_pred             eeeccccc-cccCCHHHHhHhHHhcC
Confidence            57888888 88888888888887 53

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.68  E-value=0.054  Score=30.24  Aligned_cols=20  Identities=0%  Similarity=-0.004  Sum_probs=10.2

Q ss_pred             cccCcchhccCChhhhhhhh
Q 044007          356 AVNVNSTNMYGQKGAATGTN  375 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~  375 (378)
                      |.|.-||-+|.+.++|..|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            44555555555555555543

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.25  E-value=0.15  Score=28.33  Aligned_cols=26  Identities=31%  Similarity=0.582  Sum_probs=22.5

Q ss_pred             cCCCCceecccccccccCHHHHHHHH
Q 044007          200 LLAKYTHYCQVCGKGFKRDANLRMHM  225 (378)
Q Consensus       200 ~~~~~~~~C~~C~k~F~~~~~L~~H~  225 (378)
                      ++..-.|.|.-||-.|.+.+.|..|+
T Consensus         3 llkparf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCSCCCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cccccceeccccceeecChhHHHhhh
Confidence            34556799999999999999999996

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.16  Score=27.00  Aligned_cols=18  Identities=17%  Similarity=0.425  Sum_probs=13.0

Q ss_pred             CCCccCChHHHHHHHHHh
Q 044007          333 CGTTFSRKDKLMGHVALF  350 (378)
Q Consensus       333 C~k~F~~~~~L~~H~~~H  350 (378)
                      |+|.|...+.++.|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            777777777777777666

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.69  E-value=0.063  Score=36.18  Aligned_cols=23  Identities=35%  Similarity=0.688  Sum_probs=20.9

Q ss_pred             CceecccccccccCHHHHHHHHH
Q 044007          204 YTHYCQVCGKGFKRDANLRMHMR  226 (378)
Q Consensus       204 ~~~~C~~C~k~F~~~~~L~~H~~  226 (378)
                      ..|.|..|+|.|.+...|..|++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTT
T ss_pred             CEEecccccCccCCHHHHHHHHc
Confidence            45899999999999999999974

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.37  E-value=0.25  Score=26.44  Aligned_cols=23  Identities=22%  Similarity=0.670  Sum_probs=16.6

Q ss_pred             Ceecc---CCCccCChHHHHHHH-HHh
Q 044007          328 KWQCS---CGTTFSRKDKLMGHV-ALF  350 (378)
Q Consensus       328 p~~C~---C~k~F~~~~~L~~H~-~~H  350 (378)
                      .|.|+   |...|..+.+++.|. |.|
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhc
Confidence            46775   888888888888887 444

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.71  E-value=0.24  Score=25.91  Aligned_cols=23  Identities=39%  Similarity=0.884  Sum_probs=19.9

Q ss_pred             eec--CCCCCccCCCHHHHHHHHh-cc
Q 044007          301 YVC--KRCNRKQFSVLSDLRTHEK-HC  324 (378)
Q Consensus       301 ~~C--~~C~~k~F~~~~~L~~H~~-H~  324 (378)
                      |.|  +.|+ |.|.....|+.|+. |+
T Consensus         2 yvchfe~c~-kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCG-KAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCC-CEESSHHHHHHHHHHHH
T ss_pred             eEEEecCch-HHHhhccceEEEeeccc
Confidence            667  5799 99999999999998 75

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.96  E-value=0.25  Score=26.91  Aligned_cols=27  Identities=30%  Similarity=0.706  Sum_probs=23.0

Q ss_pred             Cceec--CCCCCccCCCHHHHHHHHh-ccCC
Q 044007          299 KMYVC--KRCNRKQFSVLSDLRTHEK-HCGD  326 (378)
Q Consensus       299 k~~~C--~~C~~k~F~~~~~L~~H~~-H~g~  326 (378)
                      |.|.|  +.|+ -.|....-|..|+- |+||
T Consensus         2 k~~iCsf~dC~-A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCG-AAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGC-CEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcc-hhhccchhhhHHhhhhcCC
Confidence            45778  5699 89999999999998 9986

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.77  E-value=0.47  Score=25.31  Aligned_cols=22  Identities=32%  Similarity=0.791  Sum_probs=15.8

Q ss_pred             ceecCCCCCccCCCHHHHHHHHh
Q 044007          300 MYVCKRCNRKQFSVLSDLRTHEK  322 (378)
Q Consensus       300 ~~~C~~C~~k~F~~~~~L~~H~~  322 (378)
                      .|.|..|| |...+...++.|..
T Consensus         2 ~ftc~hcg-kqlks~~gmkyhvm   23 (30)
T d2ctda2           2 MFTCHHCG-KQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCCSSSC-CCCSSHHHHHHHHH
T ss_pred             ceechhHH-HHHhhccCceEEEe
Confidence            46777777 77777777777765

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.45  E-value=0.55  Score=25.04  Aligned_cols=23  Identities=30%  Similarity=0.657  Sum_probs=20.3

Q ss_pred             ceecccccccccCHHHHHHHHHH
Q 044007          205 THYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       205 ~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      .|.|..|||..++...++-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999999999999654

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.93  E-value=0.15  Score=28.71  Aligned_cols=23  Identities=9%  Similarity=0.034  Sum_probs=16.8

Q ss_pred             CCCCcccCcchhccCChhhhhhh
Q 044007          352 GHTPAVNVNSTNMYGQKGAATGT  374 (378)
Q Consensus       352 ~~kpy~C~~C~k~F~~~~~L~~H  374 (378)
                      |+..|+|.+|.+.|+..+++.+|
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRH   27 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRH   27 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHH
Confidence            45567888888888877777665

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=0.42  Score=25.28  Aligned_cols=20  Identities=35%  Similarity=0.798  Sum_probs=18.2

Q ss_pred             cccccccCHHHHHHHHHHhC
Q 044007          210 VCGKGFKRDANLRMHMRAHG  229 (378)
Q Consensus       210 ~C~k~F~~~~~L~~H~~~H~  229 (378)
                      -|+|.|+..+.++.|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            49999999999999998885

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.25  E-value=0.53  Score=26.43  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=23.6

Q ss_pred             CCCceecccccccccCHHHHHHHHH-HhC
Q 044007          202 AKYTHYCQVCGKGFKRDANLRMHMR-AHG  229 (378)
Q Consensus       202 ~~~~~~C~~C~k~F~~~~~L~~H~~-~H~  229 (378)
                      ++..|.|.+|.+.+...+++-+|.. .|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            4567999999999999999999975 454

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.2  Score=33.65  Aligned_cols=21  Identities=0%  Similarity=-0.129  Sum_probs=12.8

Q ss_pred             cccCcchhccCChhhhhhhhc
Q 044007          356 AVNVNSTNMYGQKGAATGTNA  376 (378)
Q Consensus       356 y~C~~C~k~F~~~~~L~~H~r  376 (378)
                      |.|..|+|.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            566666666666666665553

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.99  E-value=1.1  Score=27.17  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             CCCCceecccccccccCHHHHHHHHHH
Q 044007          201 LAKYTHYCQVCGKGFKRDANLRMHMRA  227 (378)
Q Consensus       201 ~~~~~~~C~~C~k~F~~~~~L~~H~~~  227 (378)
                      ..+.+-.|++|+...++..+|++|+..
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999854

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.82  E-value=0.31  Score=26.07  Aligned_cols=22  Identities=5%  Similarity=-0.144  Sum_probs=18.4

Q ss_pred             CCccc--CcchhccCChhhhhhhh
Q 044007          354 TPAVN--VNSTNMYGQKGAATGTN  375 (378)
Q Consensus       354 kpy~C--~~C~k~F~~~~~L~~H~  375 (378)
                      |.|.|  +.|+-+|+.+.++++|-
T Consensus         1 knf~cdsd~cdl~fttkanmkkhf   24 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHF   24 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHH
Confidence            35788  46999999999999983