Citrus Sinensis ID: 044042

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560
MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKVTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSGRKLKSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS
cccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEccccccEEEcccccccccccccEEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEccccccccEEEEcccccccccEEEEEEccEEEccccccccccccccEEccccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEEEcccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHccHHHHHccccccccccccccccccc
MASKLFFLIRAFPillalpffaypscalrnhlqvHSKNRSYCKSMLananptadvytygRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDcnsltdlnVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAesikngvsvplfedtKLSSVLLALVRKGwvgrkkkvtitrhptrtqrlfgkdrhghlplimsdeNRAIYESLsgrklksddggvLVTKIVTVsqdgkakfSTINDaitaapnntdvtdGYFLIYIKEGVYQEYISIAKNKKILMMIGDGigktiitgdrnfvdgwttfnsatfavmapnfvavdisfrntagpskHQAVALRsgadlstfyscsfegyqdslythsqrqfyrecdiygtidFIFGNAAVVLQNCNIylrlpmsgqynvitaqgrtdpnqntgisihnctFRAADELALSNQTVQtylgrpwkeySRTVIMQSFMDslinpsgwqiwtgdFALSTLYYaeydnrgpgsnsanrvtwpgyhvinatdaanftvsnfllgdvwlpqtgvpytgglis
MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLAlvrkgwvgrkkkvtitrhptrtqrlfgkdrhghlplimsdENRAIYESLSgrklksddggVLVTKIVtvsqdgkakfstindaitaapnntdvtDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGdvwlpqtgvpytgglis
MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALvrkgwvgrkkkvTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSGRKLKSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMigdgigktiitgdRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS
****LFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKVTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESL*******DDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGG***
**SKLFFLIRAFPILLALPFFAYPSCAL*NHLQVHSKNRSYC*****************RFSIRKAFSQSRKF********************ALEDCNSLTDLNVDYLSSCFQ************QADDVQTRLSAVLTNQQTCLDGLQAAANSAES******V*LFEDTKLSSVLLALVRKG****************************LPLIMSDENRAIYESL********DGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS
MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKVTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSGRKLKSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS
*ASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVG*************************L****SDE***IYES************VLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTG****
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iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKVTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSGRKLKSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query560 2.2.26 [Sep-21-2011]
Q8RXK7573 Probable pectinesterase/p yes no 0.926 0.905 0.625 0.0
Q9SRX4579 Probable pectinesterase/p no no 0.967 0.936 0.586 0.0
O22256560 Probable pectinesterase/p no no 0.983 0.983 0.571 1e-180
Q94CB1619 Probable pectinesterase/p no no 0.917 0.830 0.483 1e-142
Q9FF77624 Probable pectinesterase/p no no 0.908 0.815 0.464 1e-137
O04887510 Pectinesterase 2 OS=Citru no no 0.737 0.809 0.481 1e-113
Q43062522 Pectinesterase/pectineste N/A no 0.75 0.804 0.467 1e-109
Q84R10519 Probable pectinesterase/p no no 0.769 0.830 0.455 1e-108
O48711547 Probable pectinesterase/p no no 0.782 0.800 0.456 1e-107
P83947545 Pectinesterase/pectineste N/A no 0.908 0.933 0.397 1e-107
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function desciption
 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/532 (62%), Positives = 408/532 (76%), Gaps = 13/532 (2%)

Query: 41  YCKSMLANANPTADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTL-STAAIRALEDCN 99
           +CKS+    +   DV  YGRFS+RK+ +QSRKF   ID YLKR + L S +A+ AL+DC 
Sbjct: 43  FCKSVFPQTSQ-GDVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCR 101

Query: 100 SLTDLNVDYLSSCFQTLN--TTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAE 157
            L  L  DYL + F+T+N  T+ + L   +AD++QT LSA LTN+QTCLDG+  AA+S+ 
Sbjct: 102 YLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSW 161

Query: 158 SIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKVTIT---RHPTRTQ---RLFGKDRHG 211
           +I+NGV++PL  DTKL SV LAL  KGWV +KKK   +    HP  T    + F   R+G
Sbjct: 162 TIRNGVALPLINDTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNG 221

Query: 212 HLPLIMSDENRAIYESLSGRKLKSDDGGV---LVTKIVTVSQDGKAKFSTINDAITAAPN 268
            LPL M++  RA+YESLS RKL  DD  V   LV+ IVTV+Q+G   F+TI +A+ +APN
Sbjct: 222 ALPLKMTEHTRAVYESLSRRKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPN 281

Query: 269 NTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSAT 328
            TD T GYF+IY+  GVY+E + IAKNK+ LMMIGDGI +T++TG+RN VDGWTTFNSAT
Sbjct: 282 KTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSAT 341

Query: 329 FAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYR 388
           FAV +PNFVAV+++FRNTAGP KHQAVA+RS ADLS FYSCSFE YQD+LYTHS RQFYR
Sbjct: 342 FAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYR 401

Query: 389 ECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRA 448
           ECDIYGT+DFIFGNAAVV Q+CN+Y R PM  Q+N ITAQGRTDPNQNTGISIHNCT + 
Sbjct: 402 ECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKP 461

Query: 449 ADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDN 508
           AD+L  SN TV+TYLGRPWKEYSRTV MQS++D ++ P GW+ W GDFALSTLYYAEY+N
Sbjct: 462 ADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNN 521

Query: 509 RGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS 560
            G GS++ +RV WPGYHVIN+TDA NFTV NFLLGD W+ Q+GVPY  GL+S
Sbjct: 522 TGSGSSTTDRVVWPGYHVINSTDANNFTVENFLLGDGWMVQSGVPYISGLLS 573
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
224128446560 predicted protein [Populus trichocarpa] 0.978 0.978 0.659 0.0
255564230566 Pectinesterase-2 precursor, putative [Ri 0.916 0.906 0.697 0.0
224068368558 predicted protein [Populus trichocarpa] 0.980 0.983 0.653 0.0
359479963556 PREDICTED: probable pectinesterase/pecti 0.960 0.967 0.661 0.0
356505590556 PREDICTED: probable pectinesterase/pecti 0.912 0.919 0.685 0.0
356572750555 PREDICTED: probable pectinesterase/pecti 0.912 0.920 0.681 0.0
356503911615 PREDICTED: LOW QUALITY PROTEIN: probable 0.964 0.878 0.647 0.0
356536715559 PREDICTED: probable pectinesterase/pecti 0.976 0.978 0.645 0.0
356570974610 PREDICTED: probable pectinesterase/pecti 0.964 0.885 0.642 0.0
356500319553 PREDICTED: probable pectinesterase/pecti 0.912 0.924 0.667 0.0
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/566 (65%), Positives = 448/566 (79%), Gaps = 18/566 (3%)

Query: 3   SKLFFLIRAFPILLALPFFAYPSCA--------LRNHLQVHSKNRSYCKSMLANANPTAD 54
           SKL  L+ A  ++  LPF A PS A            L   + + S+CKS+L     + +
Sbjct: 4   SKLISLV-ALAVVF-LPFLASPSLADVPSSDPVSPGTLCKDTPDPSFCKSVLPVQ--STN 59

Query: 55  VYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTLSTAAIRALEDCNSLTDLNVDYLSSCFQ 114
           VY   R  +RK+ SQSRKFL+L++ YL RRSTLS AAIRALEDC  L +LN+++L S FQ
Sbjct: 60  VYDSARLCVRKSLSQSRKFLNLVNEYLSRRSTLSVAAIRALEDCQFLANLNMEFLLSSFQ 119

Query: 115 TLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLS 174
           T+N T + LP++QAD+VQT LSA+LTNQQTCLDGLQA + SA S+ N +SVPL  DTKL 
Sbjct: 120 TVNATSKTLPSLQADNVQTLLSAILTNQQTCLDGLQATS-SASSVSNDLSVPLSNDTKLY 178

Query: 175 SVLLALVRKGWVGRKKKVTITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSGRKL- 233
           SV LA   +GWV +KK+ + T  P   Q  F   RHG LP+ MS   RAIYES+S RKL 
Sbjct: 179 SVSLAFFTEGWVPKKKRGS-TWQPKSKQFAF---RHGRLPMKMSARTRAIYESVSTRKLL 234

Query: 234 KSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIA 293
           ++ +  + V+ IVTVSQDG+  F+TINDA+ AAPNNTD ++GYF+IY+  G+Y+EY+SIA
Sbjct: 235 QTVNNDIEVSDIVTVSQDGQGNFTTINDAVAAAPNNTDGSNGYFMIYVTAGIYEEYVSIA 294

Query: 294 KNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQ 353
           KNKK LMM+GDGI +T+ITG+R+ VDGWTTFNSATFAV+APNFVAV+I+FRNTAG  KHQ
Sbjct: 295 KNKKYLMMVGDGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFRNTAGAVKHQ 354

Query: 354 AVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIY 413
           AVA+RSGADLS FY CSFEGYQD+LYTHS RQFYRECDIYGT+DFIFGNAAVVLQNCN+Y
Sbjct: 355 AVAVRSGADLSAFYGCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLY 414

Query: 414 LRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRT 473
            RLPMSGQ+N ITAQGRTDPNQNTG SIHNC  +AAD+LA SN TVQTYLGRPWK+YSRT
Sbjct: 415 PRLPMSGQFNAITAQGRTDPNQNTGTSIHNCNIKAADDLASSNATVQTYLGRPWKQYSRT 474

Query: 474 VIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAA 533
           V MQSFMD LINP+GWQIW+GDFAL+T YYAEY+N GPGS++ NRVTWPG+HVINATDA 
Sbjct: 475 VYMQSFMDGLINPAGWQIWSGDFALNTSYYAEYNNTGPGSDTTNRVTWPGFHVINATDAV 534

Query: 534 NFTVSNFLLGDVWLPQTGVPYTGGLI 559
           NFTVS+FLLG+ WLPQT VP++ GLI
Sbjct: 535 NFTVSSFLLGNDWLPQTAVPFSSGLI 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479963|ref|XP_002268492.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356570974|ref|XP_003553657.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356500319|ref|XP_003518980.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query560
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.996 0.973 0.572 5.2e-168
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.983 0.983 0.548 8.4e-161
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.769 0.744 0.618 7.5e-144
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.916 0.828 0.462 1.7e-121
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.908 0.815 0.440 1.3e-118
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 0.553 0.566 0.533 6e-99
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.6 0.567 0.504 9.9e-95
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.580 0.616 0.516 1.6e-94
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.553 0.528 0.517 2.3e-93
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.605 0.608 0.498 4.8e-93
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
 Identities = 329/575 (57%), Positives = 401/575 (69%)

Query:     1 MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNR---SYCKSMLANANPTADVYT 57
             M S   FL+  F  L  L F A  +    N      K      +CKS+    +   DV  
Sbjct:     1 MLSLKLFLVTLFLSLQTL-FIASQTLLPSNSSSTICKTTPDPKFCKSVFPQTSQ-GDVRE 58

Query:    58 YGRFSIRKAFSQSRKFLHLIDTYLKRRSTL-STAAIRALEDCNSLTDLNVDYLSSCFQTL 116
             YGRFS+RK+ +QSRKF   ID YLKR + L S +A+ AL+DC  L  L  DYL + F+T+
Sbjct:    59 YGRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASLTTDYLITSFETV 118

Query:   117 N--TTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDTKLS 174
             N  T+ + L   +AD++QT LSA LTN+QTCLDG+  AA+S+ +I+NGV++PL  DTKL 
Sbjct:   119 NITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLINDTKLF 178

Query:   175 SVLLALXXXXXXXXXXXXTIT---RHPTRTQ---RLFGKDRHGHLPLIMSDENRAIYESL 228
             SV LAL              +    HP  T    + F   R+G LPL M++  RA+YESL
Sbjct:   179 SVSLALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLKMTEHTRAVYESL 238

Query:   229 SGRKLKSDDGGV---LVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGV 285
             S RKL  DD  V   LV+ IVTV+Q+G   F+TI +A+ +APN TD T GYF+IY+  GV
Sbjct:   239 SRRKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGV 298

Query:   286 YQEYISIAKNKKILMMXXXXXXXXXXXXXRNFVDGWTTFNSATFAVMAPNFVAVDISFRN 345
             Y+E + IAKNK+ LMM             RN VDGWTTFNSATFAV +PNFVAV+++FRN
Sbjct:   299 YEENVVIAKNKRYLMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRN 358

Query:   346 TAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAV 405
             TAGP KHQAVA+RS ADLS FYSCSFE YQD+LYTHS RQFYRECDIYGT+DFIFGNAAV
Sbjct:   359 TAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 418

Query:   406 VLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGR 465
             V Q+CN+Y R PM  Q+N ITAQGRTDPNQNTGISIHNCT + AD+L  SN TV+TYLGR
Sbjct:   419 VFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGR 478

Query:   466 PWKEYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYH 525
             PWKEYSRTV MQS++D ++ P GW+ W GDFALSTLYYAEY+N G GS++ +RV WPGYH
Sbjct:   479 PWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYH 538

Query:   526 VINATDAANFTVSNFLLGDVWLPQTGVPYTGGLIS 560
             VIN+TDA NFTV NFLLGD W+ Q+GVPY  GL+S
Sbjct:   539 VINSTDANNFTVENFLLGDGWMVQSGVPYISGLLS 573
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0009741 "response to brassinosteroid stimulus" evidence=IEP
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RXK7PME41_ARATH3, ., 1, ., 1, ., 1, 10.62590.92670.9057yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-158
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-158
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-151
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-151
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-149
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-147
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-146
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-145
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-144
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-142
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-140
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-133
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-126
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-121
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-120
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-117
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-111
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-109
PLN02197588 PLN02197, PLN02197, pectinesterase 5e-82
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-64
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 8e-62
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-60
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-56
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 9e-55
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 9e-53
PLN02304379 PLN02304, PLN02304, probable pectinesterase 2e-51
PLN02671359 PLN02671, PLN02671, pectinesterase 3e-47
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-44
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-41
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 7e-33
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-16
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 8e-14
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 9e-14
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 0.003
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  879 bits (2272), Expect = 0.0
 Identities = 380/571 (66%), Positives = 450/571 (78%), Gaps = 16/571 (2%)

Query: 1   MASKLFFLIRAFPILLALPFFAYPSCALRNHLQVHSKNR--------SYCKSMLANANPT 52
           M+SKL  L      LL L FF+  S +        S +         S+CKS+L + N  
Sbjct: 1   MSSKLILLTTLA--LLLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPH-NQP 57

Query: 53  ADVYTYGRFSIRKAFSQSRKFLHLIDTYLKRRSTL-STAAIRALEDCNSLTDLNVDYLSS 111
            +VY YGRFS+RK+ SQSRKFL L+D YLKR STL S +AIRALEDC  L  LN+D+L S
Sbjct: 58  GNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLS 117

Query: 112 CFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAAANSAESIKNGVSVPLFEDT 171
            F+T+N++ + L   QADDVQT LSA+LTNQQTCLDGLQAA+ SA S++NG++VPL  DT
Sbjct: 118 SFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAAS-SAWSVRNGLAVPLSNDT 176

Query: 172 KLSSVLLALVRKGWVGRKKKVT-ITRHPTRTQRLFGKDRHGHLPLIMSDENRAIYESLSG 230
           KL SV LAL  KGWV +KKK    T+     +      R+G LPL M+++ RA+YES+S 
Sbjct: 177 KLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAF-RNGRLPLKMTEKTRAVYESVSR 235

Query: 231 RK-LKSDDGGVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEY 289
           RK L  D   VLV+ IVTV+Q+G   F+TINDA+ AAPNNTD ++GYF+IY+  GVY+EY
Sbjct: 236 RKLLDGDANAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEY 295

Query: 290 ISIAKNKKILMMIGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGP 349
           +SI KNKK LMMIGDGI +T+ITG+R+ VDGWTTFNSATFAV+  NFVAV+I+FRNTAGP
Sbjct: 296 VSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGP 355

Query: 350 SKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQN 409
           +KHQAVALRSGADLSTFYSCSFE YQD+LYTHS RQFYRECDIYGT+DFIFGNAAVV QN
Sbjct: 356 AKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQN 415

Query: 410 CNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKE 469
           CN+Y RLPM GQ+N ITAQGRTDPNQNTG SI NCT +AAD+LA SN TV+TYLGRPWKE
Sbjct: 416 CNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKE 475

Query: 470 YSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINA 529
           YSRTV+MQS++D LI+P+GW  W+GDFALSTLYYAEY+N GPGS++ NRVTWPGYHVINA
Sbjct: 476 YSRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINA 535

Query: 530 TDAANFTVSNFLLGDVWLPQTGVPYTGGLIS 560
           TDAANFTVSNFLLGD WLPQTGVP+T GLIS
Sbjct: 536 TDAANFTVSNFLLGDGWLPQTGVPFTSGLIS 566

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 560
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02197588 pectinesterase 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.93
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.93
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.89
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.37
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.71
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.66
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.57
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.09
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.71
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.97
KOG1777 625 consensus Putative Zn-finger protein [General func 96.94
PLN02682369 pectinesterase family protein 96.5
PRK10531422 acyl-CoA thioesterase; Provisional 96.5
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.44
PLN02773317 pectinesterase 96.29
PLN02218431 polygalacturonase ADPG 96.2
PLN02480343 Probable pectinesterase 96.15
PLN02793443 Probable polygalacturonase 95.97
PLN03003456 Probable polygalacturonase At3g15720 95.68
PLN02497331 probable pectinesterase 95.66
PLN02176340 putative pectinesterase 95.57
PLN02634359 probable pectinesterase 95.55
PLN02665366 pectinesterase family protein 95.38
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.3
PLN02432293 putative pectinesterase 95.24
PLN02671359 pectinesterase 95.22
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.15
PLN03010409 polygalacturonase 94.96
PLN02304379 probable pectinesterase 94.95
smart00656190 Amb_all Amb_all domain. 94.62
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.42
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.28
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 94.26
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.1
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.09
PLN02916502 pectinesterase family protein 93.97
PLN02197588 pectinesterase 93.9
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.86
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.84
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.82
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.75
PLN02155394 polygalacturonase 93.62
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.61
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.57
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.49
PLN02301548 pectinesterase/pectinesterase inhibitor 93.21
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.18
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.14
PLN02314586 pectinesterase 93.04
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.74
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 92.56
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 92.5
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.06
PLN02468565 putative pectinesterase/pectinesterase inhibitor 92.05
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.75
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.7
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 91.06
PLN02170529 probable pectinesterase/pectinesterase inhibitor 90.04
PLN02188404 polygalacturonase/glycoside hydrolase family prote 88.74
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 86.97
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 86.96
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 86.69
smart00722146 CASH Domain present in carbohydrate binding protei 84.6
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 83.1
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.1e-145  Score=1191.60  Aligned_cols=554  Identities=68%  Similarity=1.086  Sum_probs=482.9

Q ss_pred             CcchhhHHHHHHHHHHHhhhcccc---cchh----hcccCCCCCChhcHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 044042            1 MASKLFFLIRAFPILLALPFFAYP---SCAL----RNHLQVHSKNRSYCKSMLANANPTADVYTYGRFSIRKAFSQSRKF   73 (560)
Q Consensus         1 ma~~~~~~~~~~~~~l~~~~~~~~---~~~~----~~~~C~~T~yp~lC~ssL~~~~~~~dp~~l~~~al~~a~~~a~~a   73 (560)
                      ||+++..+.++.. ||||+|..+.   +...    |+.+|++|+||++|+++|++. ...+|.+|++++|+++++++.++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~C~~T~YP~~C~ssLs~s-~~~d~~~l~~aaL~~tl~~a~~a   78 (566)
T PLN02713          1 MSSKLILLTTLAL-LLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPHN-QPGNVYDYGRFSVRKSLSQSRKF   78 (566)
T ss_pred             CchhHHHHHHHHH-HHHHhcchhhhcCCCcCCCCCCccccCCCCChHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence            8888877765443 3333333222   1111    789999999999999999863 35689999999999999999999


Q ss_pred             HHHHHHHHhhcCC-CCHHHHHHHHHHHHhHHHHHHHHHHHHHHhccccCCCCccChhhHHHHHHHhhhhhHHHHHhhhhh
Q 044042           74 LHLIDTYLKRRST-LSTAAIRALEDCNSLTDLNVDYLSSCFQTLNTTREILPAMQADDVQTRLSAVLTNQQTCLDGLQAA  152 (560)
Q Consensus        74 ~~~i~~ll~~~~~-~~~~~k~AL~DC~el~~davd~L~~S~~~l~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~e~  152 (560)
                      ...++++....+. +++++++||+||+|||++++|+|++|+.+|...+...+.++++|+|||||||||||+||+|||++.
T Consensus        79 ~~~vs~L~~~~~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~  158 (566)
T PLN02713         79 LSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAA  158 (566)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhcc
Confidence            9999988654322 388999999999999999999999999999854433346789999999999999999999999876


Q ss_pred             cccchhhcccccccchhhHHHHHHHHHhhhcccccccccc-cccC--CCcccccccCCCCCCCCCceeccchhhhhhccc
Q 044042          153 ANSAESIKNGVSVPLFEDTKLSSVLLALVRKGWVGRKKKV-TITR--HPTRTQRLFGKDRHGHLPLIMSDENRAIYESLS  229 (560)
Q Consensus       153 ~~~~~~~~~~l~~~~~~v~~L~SNALAiv~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~P~w~~~~~~~~~~~~~  229 (560)
                       +....+++.|...+.++++|+||||||++..+....... ...+  +..|++++.   .+++||+||++.||+++++..
T Consensus       159 -~~~~~~k~~v~~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~P~w~~~~d~~~~~~~~  234 (566)
T PLN02713        159 -SSAWSVRNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAF---RNGRLPLKMTEKTRAVYESVS  234 (566)
T ss_pred             -ccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccchhcc---ccCCCCcCccccccccccccc
Confidence             433356677888899999999999999996322211110 0000  112334442   235799999999999999989


Q ss_pred             ccccccCCC-CceeeeEEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEeCcEEeEEEEEeecCCceEEEecCCCc
Q 044042          230 GRKLKSDDG-GVLVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGK  308 (560)
Q Consensus       230 ~R~ll~~~~-~~~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~g~~~  308 (560)
                      +||||+... ...+..+++|++||+|+|+|||+||+++|.+...+++|++||||||+|+|+|+|+++|++|+|+|+|+++
T Consensus       235 ~R~ll~~~~~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~  314 (566)
T PLN02713        235 RRKLLDGDANAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQ  314 (566)
T ss_pred             cchhhcCccccccCCceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEecCCCC
Confidence            999997532 2233457999999999999999999999987433467999999999999999999999999999999999


Q ss_pred             eEEeccccccCCccccccceEEEEeCcEEEEEeeEeeCCCCCCCceeeeecCCCeEEEEEceeccccceeeecCcceeee
Q 044042          309 TIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYR  388 (560)
Q Consensus       309 tiI~~~~~~~~g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~  388 (560)
                      |||+|+++..+|++|++||||.|.|++|+++||||+|++|+.++||||||+.+|+++||||+|+|||||||+|.+||||+
T Consensus       315 TiIt~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~  394 (566)
T PLN02713        315 TVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYR  394 (566)
T ss_pred             cEEEcCCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEcceeeeeccceEEEeeeEEEEecCCCCCceEEEecCCCCCCCCceEEEeeeEEeeccccccccCcceEEeeccCC
Q 044042          389 ECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWK  468 (560)
Q Consensus       389 ~c~I~G~vDfIfG~~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~  468 (560)
                      +|+|+|+||||||+|++|||||+|++|+|++++.|+||||||+++++++||||+||+|++++++.+.....++||||||+
T Consensus       395 ~C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~  474 (566)
T PLN02713        395 ECDIYGTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWK  474 (566)
T ss_pred             eeEEecccceecccceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCC
Confidence            99999999999999999999999999999888899999999999999999999999999998877665667899999999


Q ss_pred             CCCcEEEeccCCCCccCCCCCcCCCCCCCCcccEEEEecccCCCCCCCCcccCCCcccCCHHHHcccchhccccCCCCcC
Q 044042          469 EYSRTVIMQSFMDSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVINATDAANFTVSNFLLGDVWLP  548 (560)
Q Consensus       469 ~~s~~v~~~s~~~~~i~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~ea~~~t~~~~~~g~~W~p  548 (560)
                      +|||||||+|+|+++|+|+||.+|++++.++|+||+||+|+||||++++||+|+|+|+|+.+||.+||+++||+|++|+|
T Consensus       475 ~ysr~V~~~s~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~g~~~l~~~ea~~ft~~~fi~g~~Wl~  554 (566)
T PLN02713        475 EYSRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLLGDGWLP  554 (566)
T ss_pred             CcceEEEEecccCCeecccccCCCCCCCCCCceEEEEecccCCCCCcCCCccccceeecCHHHhhhccHhheeCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCC
Q 044042          549 QTGVPYTGGLIS  560 (560)
Q Consensus       549 ~~~~p~~~~~~~  560 (560)
                      .+||||++||++
T Consensus       555 ~~gvp~~~gl~~  566 (566)
T PLN02713        555 QTGVPFTSGLIS  566 (566)
T ss_pred             CCCCCcccccCC
Confidence            999999999974

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-90
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-89
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-20
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-20
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 2e-19
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-19
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  330 bits (847), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/314 (51%), Positives = 209/314 (66%), Gaps = 4/314 (1%)
Query: 246 VTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMXXXX 305
           V V+ DG   + T+++A+ AAP ++      ++I IK GVY+E + + K KK +M     
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTR---YVIRIKAGVYRENVDVPKKKKNIMFLGDG 65
Query: 306 XXXXXXXXXRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLST 365
                    +N  DG TTFNSAT A +   F+A DI+F+NTAG +KHQAVALR G+DLS 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125
Query: 366 FYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVI 425
           FY C    YQDSLY HS RQF+  C I GT+DFIFGNAAVVLQ+C+I+ R P SGQ N++
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185
Query: 426 TAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLIN 485
           TAQGRTDPNQNTGI I      A  +L     +  TYLGRPWKEYSRTV+MQS + ++IN
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245
Query: 486 PSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVI-NATDAANFTVSNFLLGD 544
           P+GW  W G+FAL TLYY EY N G G+ ++ RVTW G+ VI ++T+A  FT  +F+ G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 545 VWLPQTGVPYTGGL 558
            WL  T  P++ GL
Sbjct: 306 SWLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query560
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-171
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-171
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-127
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-122
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-103
1x91_A153 Invertase/pectin methylesterase inhibitor family p 1e-18
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-16
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  486 bits (1254), Expect = e-171
 Identities = 170/318 (53%), Positives = 218/318 (68%), Gaps = 4/318 (1%)

Query: 242 VTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMM 301
           V   V V+ DG   + T+++A+ AAP ++      ++I IK GVY+E + + K KK +M 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPEDSK---TRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 302 IGDGIGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGA 361
           +GDG   TIIT  +N  DG TTFNSAT A +   F+A DI+F+NTAG +KHQAVALR G+
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGS 121

Query: 362 DLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQ 421
           DLS FY C    YQDSLY HS RQF+  C I GT+DFIFGNAAVVLQ+C+I+ R P SGQ
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ 181

Query: 422 YNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMD 481
            N++TAQGRTDPNQNTGI I      A  +L     +  TYLGRPWKEYSRTV+MQS + 
Sbjct: 182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT 241

Query: 482 SLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVI-NATDAANFTVSNF 540
           ++INP+GW  W G+FAL TLYY EY N G G+ ++ RVTW G+ VI ++T+A  FT  +F
Sbjct: 242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSF 301

Query: 541 LLGDVWLPQTGVPYTGGL 558
           + G  WL  T  P++ GL
Sbjct: 302 IAGGSWLKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.95
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.95
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.94
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.45
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.67
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.31
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.01
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.59
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.5
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.36
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.35
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.32
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.24
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.17
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.17
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.14
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.13
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.06
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.04
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.04
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.03
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.77
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.74
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.71
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.66
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.57
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.35
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.14
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.9
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.83
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.81
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.73
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.39
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.38
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.23
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.06
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.91
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.12
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 89.61
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 89.02
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 88.42
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 88.3
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 87.77
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 86.65
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 84.74
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 84.1
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 82.84
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 81.95
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 81.7
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 81.69
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 81.3
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1e-96  Score=761.90  Aligned_cols=314  Identities=53%  Similarity=0.928  Sum_probs=301.0

Q ss_pred             eeEEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEeCcEEeEEEEEeecCCceEEEecCCCceEEeccccccCCcc
Q 044042          243 TKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDGWT  322 (560)
Q Consensus       243 ~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~~  322 (560)
                      +++++|++||+|+|+|||+||++||++   +++|++|+|+||+|+|+|.|++.|++|||+|+|+++|+|+++.+..+|.+
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK---SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC---CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            468999999999999999999999998   57899999999999999999998999999999999999999998889999


Q ss_pred             ccccceEEEEeCcEEEEEeeEeeCCCCCCCceeeeecCCCeEEEEEceeccccceeeecCcceeeeccEEEcceeeeecc
Q 044042          323 TFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGN  402 (560)
Q Consensus       323 t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIfG~  402 (560)
                      |++++||.|.|++|+++||||+|++|+.++|||||++.+|+++|+||+|+|||||||+|.+||||++|+|+|+||||||+
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~  158 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGN  158 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEEC
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCC
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeeEEEEecCCCCCceEEEecCCCCCCCCceEEEeeeEEeeccccccccCcceEEeeccCCCCCcEEEeccCCCC
Q 044042          403 AAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDS  482 (560)
Q Consensus       403 ~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~~~  482 (560)
                      ++++||+|+|+++++.+++.++||||||+++.+++||||+||+|++++++.+.....++||||||++|||+|||+|+|++
T Consensus       159 ~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~  238 (317)
T 1xg2_A          159 AAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGG  238 (317)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCC
Confidence            99999999999999887888999999999999999999999999999887655455689999999999999999999999


Q ss_pred             ccCCCCCcCCCCCCCCcccEEEEecccCCCCCCCCcccCCCcccCC-HHHHcccchhccccCCCCcCCCCCCcCCCCC
Q 044042          483 LINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVIN-ATDAANFTVSNFLLGDVWLPQTGVPYTGGLI  559 (560)
Q Consensus       483 ~i~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~-~~ea~~~t~~~~~~g~~W~p~~~~p~~~~~~  559 (560)
                      +|+|+||.+|+++++++|++|+||+|+||||++++||+|+++|+|+ ++||++|++.+||+|++|+|.+||||.+||.
T Consensus       239 ~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          239 LINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             cccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            9999999999999999999999999999999999999999988886 5899999999999999999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 560
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-144
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-87
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 4e-17
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-13
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 4e-05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  416 bits (1071), Expect = e-144
 Identities = 169/314 (53%), Positives = 217/314 (69%), Gaps = 4/314 (1%)

Query: 246 VTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDG 305
           V V+ DG   + T+++A+ AAP ++      ++I IK GVY+E + + K KK +M +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSK---TRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 306 IGKTIITGDRNFVDGWTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLST 365
              TIIT  +N  DG TTFNSAT A +   F+A DI+F+NTAG +KHQAVALR G+DLS 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125

Query: 366 FYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIFGNAAVVLQNCNIYLRLPMSGQYNVI 425
           FY C    YQDSLY HS RQF+  C I GT+DFIFGNAAVVLQ+C+I+ R P SGQ N++
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185

Query: 426 TAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFMDSLIN 485
           TAQGRTDPNQNTGI I      A  +L     +  TYLGRPWKEYSRTV+MQS + ++IN
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245

Query: 486 PSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYHVI-NATDAANFTVSNFLLGD 544
           P+GW  W G+FAL TLYY EY N G G+ ++ RVTW G+ VI ++T+A  FT  +F+ G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305

Query: 545 VWLPQTGVPYTGGL 558
            WL  T  P++ GL
Sbjct: 306 SWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query560
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.93
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.98
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.7
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.88
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.96
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.71
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.63
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.48
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.05
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.88
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.84
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.82
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.63
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.6
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.71
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.69
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.59
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.42
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 89.64
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 89.52
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 80.59
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.3e-99  Score=778.33  Aligned_cols=315  Identities=53%  Similarity=0.920  Sum_probs=302.9

Q ss_pred             eeeeEEEEcCCCCCCcccHHHHHHhCCCCCCCCCceEEEEEeCcEEeEEEEEeecCCceEEEecCCCceEEeccccccCC
Q 044042          241 LVTKIVTVSQDGKAKFSTINDAITAAPNNTDVTDGYFLIYIKEGVYQEYISIAKNKKILMMIGDGIGKTIITGDRNFVDG  320 (560)
Q Consensus       241 ~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~I~~~~~~itl~G~g~~~tiI~~~~~~~~g  320 (560)
                      .++++++|++||+|+|+|||+||+++|.+   +..|++|+|+||+|+|+|.|++.|++|+|+|+|++.|+|+++.+..++
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC---CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            36789999999999999999999999998   678999999999999999999999999999999999999999999999


Q ss_pred             ccccccceEEEEeCcEEEEEeeEeeCCCCCCCceeeeecCCCeEEEEEceeccccceeeecCcceeeeccEEEcceeeee
Q 044042          321 WTTFNSATFAVMAPNFVAVDISFRNTAGPSKHQAVALRSGADLSTFYSCSFEGYQDSLYTHSQRQFYRECDIYGTIDFIF  400 (560)
Q Consensus       321 ~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTL~~~~~r~~~~~c~I~G~vDfIf  400 (560)
                      .+|+.++||.|.+++|+++||||+|++|+.++|||||++.+||++||||+|+|||||||++.+||||++|+|+|+|||||
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIf  160 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF  160 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEE
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEe
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEeeeEEEEecCCCCCceEEEecCCCCCCCCceEEEeeeEEeeccccccccCcceEEeeccCCCCCcEEEeccCC
Q 044042          401 GNAAVVLQNCNIYLRLPMSGQYNVITAQGRTDPNQNTGISIHNCTFRAADELALSNQTVQTYLGRPWKEYSRTVIMQSFM  480 (560)
Q Consensus       401 G~~~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~  480 (560)
                      |+++++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.+.....++||||||++|+|+||++|+|
T Consensus       161 G~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l  240 (319)
T d1gq8a_         161 GNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI  240 (319)
T ss_dssp             ESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEE
T ss_pred             cCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccc
Confidence            99999999999999998888889999999999999999999999999999876665667899999999999999999999


Q ss_pred             CCccCCCCCcCCCCCCCCcccEEEEecccCCCCCCCCcccCCCcc-cCCHHHHcccchhccccCCCCcCCCCCCcCCCC
Q 044042          481 DSLINPSGWQIWTGDFALSTLYYAEYDNRGPGSNSANRVTWPGYH-VINATDAANFTVSNFLLGDVWLPQTGVPYTGGL  558 (560)
Q Consensus       481 ~~~i~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~-~l~~~ea~~~t~~~~~~g~~W~p~~~~p~~~~~  558 (560)
                      +++|.|+||.+|++.+++++++|+||+|+|||+++++||+|++++ +|+++||.+|++++||+|++|+|.+||||.+||
T Consensus       241 ~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999999999999999999999999999999999999864 678999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure