Citrus Sinensis ID: 044080

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEKYKADESS
cEEEEHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEEEcccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHcccccEEEEEcccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHcccccEEEEcccccccHHHHHHHcccccccccHHHHHHHHcccccccccEEEEEEEcccccccccccccccccHHHHcccccc
cEEEEEEEHHHHHHHHHcHHHHcccccccccEEEcccccccccccHcEEEEEEEccccccHHHHHHHHHcccccccEEEEEEEEEEccccccHEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHHcEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccccHHHHHHHcccHHHHHHHcHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHcccccEEEEEcccccccHHHHcHHcHHHccccccccHHcccccccccEEEEEEEEccccccccccccEEEccccccccccccc
malfttfittptvmaiykparegtsavthRKLRDLSATREAAGSKDVFRILACfhgpgnvsSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKnglpfinrfrrgewhDRVAGAFQAYSQlgrvsvrpttaiSALSTMDQDICHVAENKRVTMIILPfhkqwrgaddesmenlghgwrgvnqrvlknapcsvgvlvdrgfgsgsptpgptatVAQRICIIFFGGPDDREALElggmmaehpaVKLTVIKFVEkeglesdgvmlrpspsrsgfnrkwsrlrFGFHLKCLREELDETILAEFRSkwngvadyTEKVTSSIVEGVLtlgrsgdydliivgkgrfpsKMIAKLADRQAehaelgpigdilassgqgvvSSVLVVQQHdmahaeetpvaKIVQSDCekykadess
malfttfittptvmaiykparegtsavthrklrdlsatreaagsKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELtersssiimvQRARKNGLPFINRFRRGEWHDRVAGAFQaysqlgrvsVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGlesdgvmlrpspsrsgfnrkwsrlRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGvltlgrsgdydLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMahaeetpvakivQSDCEKYKADESS
MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFgsgsptpgptATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILAssgqgvvssvlvvqqHDMAHAEETPVAKIVQSDCEKYKADESS
**LFTTFITTPTVMAIYKPAR*********************GSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGS*******TATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEG****************FNRKWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQH***************************
MALFTTFITTPTVMAIYKPAREGTSAV********************FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSII************************VAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFH****************GWRGVNQRVLKNAPCSVGVLVDRG*************VAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEG***********************************ELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRF************AEHAELGPIGDILASSGQGVVSSVLVVQ*****************************
MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVAKIVQ************
MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRA**************EWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKE********************KWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAH***********************
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oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEKYKADESS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query419 2.2.26 [Sep-21-2011]
Q9M353842 Cation/H(+) antiporter 20 yes no 0.976 0.485 0.584 1e-140
Q9LUN4800 Cation/H(+) antiporter 19 no no 0.902 0.472 0.415 8e-72
Q9FFR9810 Cation/H(+) antiporter 18 no no 0.871 0.450 0.419 5e-69
Q1HDT3811 Cation/H(+) antiporter 16 no no 0.871 0.450 0.393 5e-67
Q9SIT5821 Cation/H(+) antiporter 15 no no 0.890 0.454 0.393 9e-63
Q9SUQ7820 Cation/H(+) antiporter 17 no no 0.904 0.462 0.361 4e-62
Q8VYD4867 Cation/H(+) antiporter 23 no no 0.854 0.412 0.320 8e-42
Q8L709801 Cation/H(+) antiporter 28 no no 0.868 0.454 0.336 9e-37
Q9SKA9832 Cation/H(+) antiporter 21 no no 0.861 0.433 0.315 4e-36
Q9FFB8822 Cation/H(+) antiporter 3 no no 0.811 0.413 0.283 6e-36
>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1 Back     alignment and function desciption
 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/433 (58%), Positives = 318/433 (73%), Gaps = 24/433 (5%)

Query: 1   MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNV 60
           MALFTTFITTPTVMAIYKPAR      THRKL+DLSA++++  +K+  RILAC HGP NV
Sbjct: 418 MALFTTFITTPTVMAIYKPARG-----THRKLKDLSASQDS--TKEELRILACLHGPANV 470

Query: 61  SSLISLVEATRSTQ-KQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDR 119
           SSLISLVE+ R+T+  +LKLF+MHL+ELTERSSSIIMVQRARKNGLPF++R+R GE H  
Sbjct: 471 SSLISLVESIRTTKILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRHGERHSN 530

Query: 120 VAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWR------- 172
           V G F+AY QLGRV+VRP TA+S L TM +DICH+A+ KRVTMIILPFHK+W        
Sbjct: 531 VIGGFEAYRQLGRVAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSH 590

Query: 173 -----GADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGS--GSPTPGPTATVAQR 225
                G D    EN+GHGWR VNQRVLKNAPCSV VLVDRG GS          + V +R
Sbjct: 591 HHQDGGGDGNVPENVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVER 650

Query: 226 ICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKW 285
           +C+IFFGGPDDRE++ELGG MAEHPAVK+TVI+F+ +E L S  V LRP+PS+ G  + +
Sbjct: 651 VCVIFFGGPDDRESIELGGRMAEHPAVKVTVIRFLVRETLRSTAVTLRPAPSK-GKEKNY 709

Query: 286 SRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIV 345
           + L      +   +ELDE  L +F+SKW  + +Y EK  ++I+E +L++G+S D+DLI+V
Sbjct: 710 AFLTTNVDPEK-EKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSIGQSKDFDLIVV 768

Query: 346 GKGRFPSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVAKI 405
           G+GR PS  +A LA+RQAEH ELGPIGD+LASS   ++ S+LVVQQH+ AH E+  V+KI
Sbjct: 769 GRGRIPSAEVAALAERQAEHPELGPIGDVLASSINHIIPSILVVQQHNKAHVEDITVSKI 828

Query: 406 VQSDCEKYKADES 418
           V         D +
Sbjct: 829 VSESSLSINGDTN 841
Operates as a K(+)/H(+) antiporter that maintains K(+) homeostasis in guard cells and could regulate pH. Plays a critical role in osmoregulation through the control of stomates opening.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1 Back     alignment and function description
>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1 Back     alignment and function description
>sp|Q8L709|CHX28_ARATH Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2 SV=2 Back     alignment and function description
>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2 Back     alignment and function description
>sp|Q9FFB8|CHX3_ARATH Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
147776948 859 hypothetical protein VITISV_023524 [Viti 0.971 0.473 0.690 1e-165
225440302 839 PREDICTED: cation/H(+) antiporter 20-lik 0.971 0.485 0.690 1e-165
297740402 858 unnamed protein product [Vitis vinifera] 0.971 0.474 0.690 1e-165
255573649 847 monovalent cation:proton antiporter, put 0.978 0.484 0.688 1e-163
224090288 833 cation proton exchanger [Populus trichoc 0.968 0.487 0.663 1e-154
449448910 853 PREDICTED: cation/H(+) antiporter 20-lik 0.966 0.474 0.638 1e-147
15231867 842 cation/H(+) antiporter 20 [Arabidopsis t 0.976 0.485 0.584 1e-138
357510413 851 K(+)/H(+) antiporter [Medicago truncatul 0.959 0.472 0.615 1e-138
61658329 838 cation/H+ exchanger [Arabidopsis thalian 0.947 0.473 0.598 1e-138
297820108 842 cation/H+ exchanger [Arabidopsis lyrata 0.949 0.472 0.603 1e-138
>gi|147776948|emb|CAN63422.1| hypothetical protein VITISV_023524 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/423 (69%), Positives = 338/423 (79%), Gaps = 16/423 (3%)

Query: 1   MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNV 60
           MALFTTF+TTP VM IYKP R G  A THR+LRD S+      SK   RILAC HGPGNV
Sbjct: 434 MALFTTFMTTPIVMTIYKPVR-GGPARTHRRLRDFSSVDS---SKYDLRILACVHGPGNV 489

Query: 61  SSLISLVEATRSTQK-QLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDR 119
            SLISL+EATRS +K QLKL++M LVELTERSSSIIMVQRARKNG PFINRFRRG+  DR
Sbjct: 490 PSLISLIEATRSAKKSQLKLYVMRLVELTERSSSIIMVQRARKNGFPFINRFRRGQSDDR 549

Query: 120 VAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESM 179
           V  AF+AY QLGRVSVRPTTAIS+LSTM +DICHVAE KR TM+ILPFHKQW+G   ESM
Sbjct: 550 VEVAFEAYGQLGRVSVRPTTAISSLSTMHEDICHVAEEKRATMVILPFHKQWKGEGYESM 609

Query: 180 ENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSG-SPTPGPTATVAQRICIIFFGGPDDRE 238
           EN+G+GWRGVNQRVLKN+PCSV VLVDRGFGSG   T GPT+TV QRICI+FFGGPDDRE
Sbjct: 610 ENMGNGWRGVNQRVLKNSPCSVAVLVDRGFGSGPQQTRGPTSTVTQRICILFFGGPDDRE 669

Query: 239 ALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCL- 297
           ALELG  MAEHPAVK+TVI+FVEK+G +S  ++LRPSP       K     + F    + 
Sbjct: 670 ALELGARMAEHPAVKVTVIRFVEKDGSDSKDIILRPSP------EKCDEQSYSFSTAAMD 723

Query: 298 ---REELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKM 354
               +ELDE   AEF+S+W G+ +Y EKV S++VEGVL +G+SGDYDL++VGKGRFPS M
Sbjct: 724 RQKEKELDEIATAEFKSRWGGLVEYVEKVASNVVEGVLAIGKSGDYDLVVVGKGRFPSTM 783

Query: 355 IAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVAKIVQSDCEKYK 414
           +A+LA+RQAEHAELGPIGDILASSGQG+VSSVLV+QQHD+AHAEE PV+K+V S      
Sbjct: 784 VAELAERQAEHAELGPIGDILASSGQGIVSSVLVIQQHDIAHAEEVPVSKVVNSKDATSN 843

Query: 415 ADE 417
            D+
Sbjct: 844 GDD 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440302|ref|XP_002269591.1| PREDICTED: cation/H(+) antiporter 20-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740402|emb|CBI30584.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573649|ref|XP_002527747.1| monovalent cation:proton antiporter, putative [Ricinus communis] gi|223532888|gb|EEF34660.1| monovalent cation:proton antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224090288|ref|XP_002308966.1| cation proton exchanger [Populus trichocarpa] gi|222854942|gb|EEE92489.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449448910|ref|XP_004142208.1| PREDICTED: cation/H(+) antiporter 20-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15231867|ref|NP_190940.1| cation/H(+) antiporter 20 [Arabidopsis thaliana] gi|75311818|sp|Q9M353.1|CHX20_ARATH RecName: Full=Cation/H(+) antiporter 20; AltName: Full=Protein CATION/H+ EXCHANGER 20; Short=AtCHX20 gi|7629992|emb|CAB88334.1| putative protein [Arabidopsis thaliana] gi|27311847|gb|AAO00889.1| putative protein [Arabidopsis thaliana] gi|38603806|gb|AAR24648.1| At3g53720 [Arabidopsis thaliana] gi|110742710|dbj|BAE99266.1| hypothetical protein [Arabidopsis thaliana] gi|332645611|gb|AEE79132.1| cation/H(+) antiporter 20 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357510413|ref|XP_003625495.1| K(+)/H(+) antiporter [Medicago truncatula] gi|87240332|gb|ABD32190.1| Sodium/hydrogen exchanger [Medicago truncatula] gi|355500510|gb|AES81713.1| K(+)/H(+) antiporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|61658329|gb|AAX49548.1| cation/H+ exchanger [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820108|ref|XP_002877937.1| cation/H+ exchanger [Arabidopsis lyrata subsp. lyrata] gi|297323775|gb|EFH54196.1| cation/H+ exchanger [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query419
TAIR|locus:2084370842 CHX20 "cation/H+ exchanger 20" 0.971 0.483 0.566 5.2e-120
TAIR|locus:2090462800 CHX19 "cation/H+ exchanger 19" 0.596 0.312 0.518 1.4e-66
TAIR|locus:2160457810 CHX18 "cation/H+ exchanger 18" 0.840 0.434 0.415 7.1e-61
TAIR|locus:2024578811 CHX16 "cation/H+ exchanger 16" 0.630 0.325 0.432 5.8e-59
TAIR|locus:2054152821 CHX15 "cation/hydrogen exchang 0.835 0.426 0.385 2e-56
TAIR|locus:2128484820 CHX17 "cation/H+ exchanger 17" 0.859 0.439 0.358 3.1e-55
TAIR|locus:2083830801 chx28 "cation/hydrogen exchang 0.830 0.434 0.338 5.2e-37
TAIR|locus:2031968867 CHX23 "cation/H+ exchanger 23" 0.825 0.399 0.316 2.3e-36
TAIR|locus:2007392829 CHX14 "cation/hydrogen exchang 0.603 0.305 0.319 4.1e-33
TAIR|locus:2060827831 ATCHX13 [Arabidopsis thaliana 0.596 0.300 0.315 1.3e-30
TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
 Identities = 244/431 (56%), Positives = 305/431 (70%)

Query:     1 MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNV 60
             MALFTTFITTPTVMAIYKPAR GT    HRKL+DLSA++++  +K+  RILAC HGP NV
Sbjct:   418 MALFTTFITTPTVMAIYKPAR-GT----HRKLKDLSASQDS--TKEELRILACLHGPANV 470

Query:    61 SSLISLVEATRSTQ-KQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDR 119
             SSLISLVE+ R+T+  +LKLF+MHL+ELTERSSSIIMVQRARKNGLPF++R+R GE H  
Sbjct:   471 SSLISLVESIRTTKILRLKLFVMHLMELTERSSSIIMVQRARKNGLPFVHRYRHGERHSN 530

Query:   120 VAGAFQAYSQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWR------- 172
             V G F+AY QLGRV+VRP TA+S L TM +DICH+A+ KRVTMIILPFHK+W        
Sbjct:   531 VIGGFEAYRQLGRVAVRPITAVSPLPTMHEDICHMADTKRVTMIILPFHKRWNADHGHSH 590

Query:   173 -----GADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFXXXXXXXXXX--ATVAQR 225
                  G D    EN+GHGWR VNQRVLKNAPCSV VLVDRG             + V +R
Sbjct:   591 HHQDGGGDGNVPENVGHGWRLVNQRVLKNAPCSVAVLVDRGLGSIEAQTLSLDGSNVVER 650

Query:   226 ICIIFFGGPDDREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKW 285
             +C+IFFGGPDDRE++ELGG MAEHPAVK+TVI+F+ +E L S  V LRP+PS+ G  + +
Sbjct:   651 VCVIFFGGPDDRESIELGGRMAEHPAVKVTVIRFLVRETLRSTAVTLRPAPSK-GKEKNY 709

Query:   286 SRLRFGFHLKCLREELDETILAEFRSKWNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIV 345
             + L      +   +ELDE  L +F+SKW  + +Y EK  ++I+E +L++G+S D+DLI+V
Sbjct:   710 AFLTTNVDPE-KEKELDEGALEDFKSKWKEMVEYKEKEPNNIIEEILSIGQSKDFDLIVV 768

Query:   346 GKGRFPSKMIAKLADRQAEHAELGPIGDILAXXXXXXXXXXXXXXXHDMAHAEETPVAKI 405
             G+GR PS  +A LA+RQAEH ELGPIGD+LA               H+ AH E+  V+KI
Sbjct:   769 GRGRIPSAEVAALAERQAEHPELGPIGDVLASSINHIIPSILVVQQHNKAHVEDITVSKI 828

Query:   406 VQSDCEKYKAD 416
             V         D
Sbjct:   829 VSESSLSINGD 839
GO:0006812 "cation transport" evidence=IEA;IC
GO:0009507 "chloroplast" evidence=ISM
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS
GO:0012505 "endomembrane system" evidence=IDA
GO:0030104 "water homeostasis" evidence=IMP
GO:0030007 "cellular potassium ion homeostasis" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IMP
GO:0006885 "regulation of pH" evidence=IMP
TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083830 chx28 "cation/hydrogen exchanger 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021289001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (445 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
PLN03159832 PLN03159, PLN03159, cation/H(+) antiporter 15; Pro 4e-78
cd01988132 cd01988, Na_H_Antiporter_C, The C-terminal domain 0.003
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
 Score =  257 bits (659), Expect = 4e-78
 Identities = 165/410 (40%), Positives = 236/410 (57%), Gaps = 30/410 (7%)

Query: 1   MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNV 60
           +A+  T + TP V  +Y+PAR         K R +  ++  A      R+L C H P NV
Sbjct: 420 VAVAMTALITPVVTVVYRPARRLVG----YKRRTIQRSKHDAE----LRMLVCVHTPRNV 471

Query: 61  SSLISLVEATRSTQKQ-LKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDR 119
            ++I+L+EA+  T++  + ++++HLVELT R+S++++V   RK+G P +NR       D 
Sbjct: 472 PTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNR--TQAQSDH 529

Query: 120 VAGAFQAYSQ-LGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDES 178
           +  AF+ Y Q  G VSV+P TAIS  STM +D+C++AE+KRV++II+PFHKQ     D  
Sbjct: 530 IINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQ--QTVDGG 587

Query: 179 MENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDRE 238
           ME     +RGVNQ VL NAPCSVG+LVDRG  SG+ T   +  V+  + ++FFGGPDDRE
Sbjct: 588 MEATNPAFRGVNQNVLANAPCSVGILVDRGL-SGA-TRLASNQVSHHVAVLFFGGPDDRE 645

Query: 239 ALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLR 298
           AL     M+EHP + LTV++F+  E          P+ S+   +    R+          
Sbjct: 646 ALAYAWRMSEHPGITLTVMRFIPGE-------DAAPTASQPASSPSDPRIPTVETDGKKE 698

Query: 299 EELDETILAEFRSK--WNGVADYTEKVTSSIVEGVLTLGRSGD--YDLIIVGKGR-FPSK 353
            +LDE  + EFR++   N    YTEKV S+  E V  + RS D  +DL IVG+G+   S 
Sbjct: 699 RQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAI-RSMDSAHDLFIVGRGQGMISP 757

Query: 354 MIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDMAHAEETPVA 403
           + A L D  +E  ELG IGD+LASS      SVLVVQQ+     +   + 
Sbjct: 758 LTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGPQPDDLG 806

Length = 832
>gnl|CDD|238946 cd01988, Na_H_Antiporter_C, The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 419
PLN03159832 cation/H(+) antiporter 15; Provisional 100.0
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PRK11175305 universal stress protein UspE; Provisional 99.26
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.16
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 98.17
PF00582140 Usp: Universal stress protein family; InterPro: IP 98.17
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 98.11
cd00293130 USP_Like Usp: Universal stress protein family. The 98.07
cd01987124 USP_OKCHK USP domain is located between the N-term 97.95
PF00582140 Usp: Universal stress protein family; InterPro: IP 97.92
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 97.85
PRK15005144 universal stress protein F; Provisional 97.78
PRK15456142 universal stress protein UspG; Provisional 97.73
cd01987124 USP_OKCHK USP domain is located between the N-term 97.68
PRK15118144 universal stress global response regulator UspA; P 97.67
PRK10116142 universal stress protein UspC; Provisional 97.6
PRK09982142 universal stress protein UspD; Provisional 97.54
PRK09982142 universal stress protein UspD; Provisional 97.53
PRK10116142 universal stress protein UspC; Provisional 97.5
PRK15005144 universal stress protein F; Provisional 97.41
PRK11175305 universal stress protein UspE; Provisional 97.35
cd00293130 USP_Like Usp: Universal stress protein family. The 97.3
PRK15118144 universal stress global response regulator UspA; P 97.15
PRK15456142 universal stress protein UspG; Provisional 97.08
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 95.8
COG0589154 UspA Universal stress protein UspA and related nuc 95.42
PRK12652357 putative monovalent cation/H+ antiporter subunit E 95.38
COG0589154 UspA Universal stress protein UspA and related nuc 89.81
PRK10490 895 sensor protein KdpD; Provisional 88.35
TIGR00930953 2a30 K-Cl cotransporter. 83.09
PRK03359256 putative electron transfer flavoprotein FixA; Revi 82.95
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-91  Score=771.62  Aligned_cols=374  Identities=42%  Similarity=0.641  Sum_probs=319.7

Q ss_pred             CeEEeeechHHHHhhccCCCcccccccccccccccccccccCCCCCceEEEEEecCCCCHHHHHHHHHHhcCCC-CCcEE
Q 044080            1 MALFTTFITTPTVMAIYKPAREGTSAVTHRKLRDLSATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQ-KQLKL   79 (419)
Q Consensus         1 MaLvtTfittPlv~~lY~p~~r~~~~~~rr~i~~~~~~~~~~~~~~elRILvcv~~~~~v~~ll~Lle~~~~t~-~p~~V   79 (419)
                      |++++|++++|++.++|+|+||+ ..||||++|+       .+++.|+|||+|+|+++|+++|++|++++++++ +|++|
T Consensus       420 ~avl~T~i~~Plv~~ly~p~rk~-~~~~~r~i~~-------~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~v  491 (832)
T PLN03159        420 VAVAMTALITPVVTVVYRPARRL-VGYKRRTIQR-------SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI  491 (832)
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhh-cccccccccc-------CCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceE
Confidence            35678999999999999999999 8999999999       688999999999999999999999999999998 99999


Q ss_pred             EEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHhhhc-CceEEEEEEEEccCCChHHHHHHHHHhc
Q 044080           80 FIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQL-GRVSVRPTTAISALSTMDQDICHVAENK  158 (419)
Q Consensus        80 ~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f~~~-~~V~V~~~t~Vsp~~sm~~dIc~~A~~k  158 (419)
                      |+||||||++|++|++++|+.+++..+..++.  ..++|+|++||+.|++. +.|+|+++|+|||+++||+|||++|+|+
T Consensus       492 y~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~--~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~  569 (832)
T PLN03159        492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRT--QAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDK  569 (832)
T ss_pred             EEEEEEeecCCCccceeeeecccccccccccc--cccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhc
Confidence            99999999999999999998765433222221  25589999999999976 5899999999999999999999999999


Q ss_pred             CccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcCCCCCCCCCCCCCccccceEEEEecCCcChHH
Q 044080          159 RVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGPDDRE  238 (419)
Q Consensus       159 ~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDRG~~~~~~~~~~~~~~~~~I~v~F~GG~DDRe  238 (419)
                      +++|||+||||+|+  .||++++.+..+|.+|++||++||||||||||||+++..+.....  ..++|+++|+|||||||
T Consensus       570 ~~slIilpfhk~~~--~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~--~~~~v~~~F~GG~DDRE  645 (832)
T PLN03159        570 RVSLIIIPFHKQQT--VDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQ--VSHHVAVLFFGGPDDRE  645 (832)
T ss_pred             CCCEEEECCCCccC--CCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccc--cceeEEEEecCCcchHH
Confidence            99999999999999  899999888999999999999999999999999987543322222  57899999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCCCcccccccccccccchhhhhhHHHHHHHHHhc--CCCc
Q 044080          239 ALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSGFNRKWSRLRFGFHLKCLREELDETILAEFRSK--WNGV  316 (419)
Q Consensus       239 AL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~i~ef~~~--~~~~  316 (419)
                      ||+||+|||+||+|++||+||+..+........  .....+.+.     .....+..+.|+++|+++++|||.+  .+++
T Consensus       646 ALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~  718 (832)
T PLN03159        646 ALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQ--PASSPSDPR-----IPTVETDGKKERQLDEEYINEFRARNAGNES  718 (832)
T ss_pred             HHHHHHHHhcCCCeEEEEEEEEccccccccccc--ccccccccc-----cccccccchhHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999965432211000  000000000     0000011245788999999999998  5789


Q ss_pred             eEEEEEEcCChHHHHHHhhhcCC-CcEEEEccCCC-CchhhcccccccCCCCccccchhhhhcCCCCceecEEEEeeecC
Q 044080          317 ADYTEKVTSSIVEGVLTLGRSGD-YDLIIVGKGRF-PSKMIAKLADRQAEHAELGPIGDILASSGQGVVSSVLVVQQHDM  394 (419)
Q Consensus       317 V~y~e~~v~~~~e~~~~i~~~~~-~dLviVGR~~~-~s~~~~gl~~~w~e~~eLG~iGd~Las~d~~~~aSvLVvQq~~~  394 (419)
                      |.|+|+.|+|+.|++.+||+|.+ |||+||||+|+ ++++++||++ |+||||||+|||+|||+||.+++||||||||..
T Consensus       719 v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~-w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~  797 (832)
T PLN03159        719 IVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYVG  797 (832)
T ss_pred             eEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccc-cccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence            99999999999999999999986 99999999984 5899999999 999999999999999999999999999999985


Q ss_pred             CC
Q 044080          395 AH  396 (419)
Q Consensus       395 ~~  396 (419)
                      ..
T Consensus       798 ~~  799 (832)
T PLN03159        798 TG  799 (832)
T ss_pred             CC
Confidence            43

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query419
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 57/469 (12%), Positives = 126/469 (26%), Gaps = 137/469 (29%)

Query: 33  RDLS-ATREAAGSKDVFRILACFHGPGNVSSLISLVEATRSTQKQL-KLFIMHLVELTER 90
           +D+    +     +++  I+        VS  + L     S Q+++ + F+    E+   
Sbjct: 36  KDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRI 89

Query: 91  SSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYSQLGRVSVRPTTAI-SALSTMDQ 149
           +   +M     +   P +      E  DR+    Q +++     ++P   +  AL  +  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 150 D---ICH-------------VAENKRVTMIILPFHKQW-----RGADDESMENLGHGWRG 188
               +               V  + +V    + F   W       + +  +E L      
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEML------ 202

Query: 189 VNQRVLKNAPCSVGVLVDRGFGSGSPTPGPTATVAQRICIIFFGGP--------DD---R 237
             Q++L     +     D      S       ++   +  +    P         +    
Sbjct: 203 --QKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 238 EALE--------------------LGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPS 277
           +A                      L      H ++    +     E       +L     
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LL----- 307

Query: 278 RSGFNRKWSRLRFGFHLKCLREELDET------ILAE----FRSKWNGVADYTEKVTSSI 327
                 K+   R     + L  E+  T      I+AE      + W+          ++I
Sbjct: 308 -----LKYLDCRP----QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 328 VEGVLTLGRSGDY-----DLIIVGKG-RFPSKMIAKL-ADRQAEHAELGPIGDILASSGQ 380
           +E  L +    +Y      L +       P+ +++ +  D             ++     
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVV----N 409

Query: 381 GVVSSVLVVQQ--------HDM-----AHAEETPV--AKIVQSDCEKYK 414
            +    LV +Q          +        E        IV    + Y 
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYN 454

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.4
3loq_A294 Universal stress protein; structural genomics, PSI 99.34
3olq_A319 Universal stress protein E; structural genomics, P 99.32
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.21
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.2
3s3t_A146 Nucleotide-binding protein, universal stress PROT 98.24
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 98.15
3fdx_A143 Putative filament protein / universal stress PROT; 98.11
3fg9_A156 Protein of universal stress protein USPA family; A 98.1
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 98.06
3dlo_A155 Universal stress protein; unknown function, struct 98.01
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 97.99
3s3t_A146 Nucleotide-binding protein, universal stress PROT 97.96
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 97.95
2z08_A137 Universal stress protein family; uncharacterized c 97.94
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 97.9
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 97.88
3dlo_A155 Universal stress protein; unknown function, struct 97.84
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 97.83
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 97.83
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 97.8
3tnj_A150 Universal stress protein (USP); structural genomic 97.77
3fg9_A156 Protein of universal stress protein USPA family; A 97.75
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 97.71
3fdx_A143 Putative filament protein / universal stress PROT; 97.71
3tnj_A150 Universal stress protein (USP); structural genomic 97.68
2z08_A137 Universal stress protein family; uncharacterized c 97.65
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 97.6
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 97.57
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 97.57
1q77_A138 Hypothetical protein AQ_178; structural genomics, 97.33
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 97.26
3loq_A 294 Universal stress protein; structural genomics, PSI 97.23
3olq_A 319 Universal stress protein E; structural genomics, P 97.17
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 97.15
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 97.11
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 96.73
1q77_A138 Hypothetical protein AQ_178; structural genomics, 96.68
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 91.07
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=99.40  E-value=2.8e-11  Score=116.62  Aligned_cols=262  Identities=14%  Similarity=0.078  Sum_probs=162.4

Q ss_pred             eEEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHh
Q 044080           48 FRILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAY  127 (419)
Q Consensus        48 lRILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f  127 (419)
                      -|||+|+...+.....+..+..++.. ....++++|.++ +         .+.         +    ...+.+...+   
T Consensus         8 ~~ILv~~D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~-~---------~~~---------~----~~l~~~~~~~---   60 (290)
T 3mt0_A            8 RSILVVIEPDQLEGLALKRAQLIAGV-TQSHLHLLVCEK-R---------RDH---------S----AALNDLAQEL---   60 (290)
T ss_dssp             CEEEEECCSSCSCCHHHHHHHHHHHH-HCCEEEEEEECS-S---------SCC---------H----HHHHHHHHHH---
T ss_pred             ceEEEEeCCCccchHHHHHHHHHHHh-cCCeEEEEEeeC-c---------HHH---------H----HHHHHHHHHH---
Confidence            47999999988888888776666543 345899999987 1         000         0    1122233322   


Q ss_pred             hhcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEEEEcC
Q 044080          128 SQLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGVLVDR  207 (419)
Q Consensus       128 ~~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGIlVDR  207 (419)
                      . ..++.++..+..  ..+..+.|++.|++..+||||+|++....  ..+      ..+.....+|+.++||+|-| |..
T Consensus        61 ~-~~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~--~~~------~~~gs~~~~vl~~~~~PVlv-v~~  128 (290)
T 3mt0_A           61 R-EEGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNP--LKK------AILTPDDWKLLRFAPCPVLM-TKT  128 (290)
T ss_dssp             H-HTTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCT--TST------TSCCHHHHHHHHHCSSCEEE-ECC
T ss_pred             h-hCCCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCc--hhh------cccCHHHHHHHhcCCCCEEE-ecC
Confidence            2 346777765543  35688999999999999999999986543  221      13445677999999999955 442


Q ss_pred             CCCCCCCCCCCCccccceEEEEecCCcC-------hHHHHHHHHHHhcCCCeEEEEEEeeeCCCCccCCcccCCCCCCCC
Q 044080          208 GFGSGSPTPGPTATVAQRICIIFFGGPD-------DREALELGGMMAEHPAVKLTVIKFVEKEGLESDGVMLRPSPSRSG  280 (419)
Q Consensus       208 G~~~~~~~~~~~~~~~~~I~v~F~GG~D-------DReAL~la~rma~~~~v~lTVvr~~~~~~~~~~~~~~~~~~~~~~  280 (419)
                      +.. .         ...+|++++=|.+.       .+.||++|.+|++..+..|+++++.........         .. 
T Consensus       129 ~~~-~---------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---------~~-  188 (290)
T 3mt0_A          129 ARP-W---------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA---------DP-  188 (290)
T ss_dssp             CSC-S---------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------------
T ss_pred             CCC-C---------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc---------Cc-
Confidence            221 0         24689999999888       799999999999999999999999864321100         00 


Q ss_pred             CcccccccccccccchhhhhhHHHHHHHHHhc-CCCceEEEEEEcCChHHHHHHhhhcCCCcEEEEccCCCCchhhcccc
Q 044080          281 FNRKWSRLRFGFHLKCLREELDETILAEFRSK-WNGVADYTEKVTSSIVEGVLTLGRSGDYDLIIVGKGRFPSKMIAKLA  359 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~D~~~i~ef~~~-~~~~V~y~e~~v~~~~e~~~~i~~~~~~dLviVGR~~~~s~~~~gl~  359 (419)
                              ....  .+..++.-.+.++++... +-..+.+ .....++.+.+...-+-.++||+|+|.++. +    ++.
T Consensus       189 --------~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~-~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~-~----~~~  252 (290)
T 3mt0_A          189 --------TFQL--SETIEARYREACRTFQAEYGFSDEQL-HIEEGPADVLIPRTAQKLDAVVTVIGTVAR-T----GLS  252 (290)
T ss_dssp             --------CHHH--HHHHHHHHHHHHHHHHHHHTCCTTTE-EEEESCHHHHHHHHHHHHTCSEEEEECCSS-C----CGG
T ss_pred             --------hhHH--HHHHHHHHHHHHHHHHHHcCCCcceE-EEeccCHHHHHHHHHHhcCCCEEEECCCCC-c----CCc
Confidence                    0000  001112223445555544 2111222 222345555443332224589999998862 1    222


Q ss_pred             cccCCCCccccchhhhhcCCCCceecEEEEeee
Q 044080          360 DRQAEHAELGPIGDILASSGQGVVSSVLVVQQH  392 (419)
Q Consensus       360 ~~w~e~~eLG~iGd~Las~d~~~~aSvLVvQq~  392 (419)
                      +     -=+|-+.+.++..   +..+||||..+
T Consensus       253 ~-----~~~Gsv~~~vl~~---~~~pVLvv~~~  277 (290)
T 3mt0_A          253 G-----ALIGNTAEVVLDT---LESDVLVLKPD  277 (290)
T ss_dssp             G-----CCSCHHHHHHHTT---CSSEEEEECCH
T ss_pred             c-----eecchHHHHHHhc---CCCCEEEECCC
Confidence            2     2388888888865   67899999754
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query419
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 98.46
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 98.21
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 98.17
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 98.13
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 97.95
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 97.88
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 97.84
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 97.62
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 97.59
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 97.29
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 97.07
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 96.03
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=3.4e-07  Score=75.58  Aligned_cols=132  Identities=17%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhcCCCCCcEEEEEEEeeeCCCCchhhHHHHhhhCCCCccccccCCcchHHHHHHHHHhh
Q 044080           49 RILACFHGPGNVSSLISLVEATRSTQKQLKLFIMHLVELTERSSSIIMVQRARKNGLPFINRFRRGEWHDRVAGAFQAYS  128 (419)
Q Consensus        49 RILvcv~~~~~v~~ll~Lle~~~~t~~p~~V~~LhLvELt~R~s~~~~~~~~~~~~~~~~~~~~~~~~~d~I~~af~~f~  128 (419)
                      |||+|+..-++...++..+..++.. ....++++|.++-+......-...+..            ....+.....++.+.
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~~-~~~~l~ll~V~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~   69 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPDYLGEPFFEEAL------------RRRLERAEGVLEEAR   69 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHH-HTCEEEEEEEECCCCTTCCTTHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH-cCCEEEEEEEecCCccccccchhHHHH------------HHHHHHHHHHHHHHH
Confidence            7999998888877788776665533 456899999998543322211011100            022344445555554


Q ss_pred             hcCceEEEEEEEEccCCChHHHHHHHHHhcCccEEEecccCCCCCCCCCCccccCccchhhHHHhhhcCCccEEE
Q 044080          129 QLGRVSVRPTTAISALSTMDQDICHVAENKRVTMIILPFHKQWRGADDESMENLGHGWRGVNQRVLKNAPCSVGV  203 (419)
Q Consensus       129 ~~~~V~V~~~t~Vsp~~sm~~dIc~~A~~k~adLIIlP~hk~~~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVGI  203 (419)
                      +..++........+  .+..+.||+.|++.++|||++|+|.+..  ..+      -.+..+..++++++||+|-|
T Consensus        70 ~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~--~~~------~~~Gs~~~~ll~~~~~pVlv  134 (135)
T d2z3va1          70 ALTGVPKEDALLLE--GVPAEAILQAARAEKADLIVMGTRGLGA--LGS------LFLGSQSQRVVAEAPCPVLL  134 (135)
T ss_dssp             HHHCCCGGGEEEEE--SCHHHHHHHHHHHTTCSEEEEESSCSSS--CBC------SSCBHHHHHHHHHCSSCEEE
T ss_pred             HhcCCCeEEEEEEc--CChHHHHHHHhhhhheeeEEeccCCCCc--ccc------cccCcHHHHHHHhCCCCEEe
Confidence            43333333322222  5778999999999999999999996644  221      13445678999999999955
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure